dvi_4924

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:1810146-1810396 +	dvi_4924	AGCCGAGTGTCGTCGT-----------CTGAGATCTGGAATT--ACGC-TCCCGATTGGCGCGCGCTCAGATTCTTGGTATAAATGCTG--AAAGAGC----TTTCCGGTCAGATCATTTG--CGGAAT-------AGGCAAC---ATGGAATTACGAGCTATACTTGGATTGAGCTGG------------C------------------TTTGTATCGGTAACTAAACTGATTTGCATTCTTGCT--------TTTTTAATTTACATCAGCTT----TC--------------------GATTTCGCCTCCAGCAGTTGATGCACAAAGCACTTACGA-T----------------GGAAG
droMoj3	scaffold_6496:13684472-13684733 -		AATCGAATGTTGTCGTGGTCGTCGTCGTTG-----GGGAAAT--TTTC-TGCCGATTGA----------GAATGC--ATATAAATAGTG--GAGGAGC----TCAATGTTGATAGCATTCGATTGAAAT-------TGGCTGTGCAATGGGTTCACAAGGTATACTTGGATTGAGCTGC---GCTCTCTTGCTGTGTGCAGGTAAATGGA--------TG-AAACTAATCAACACGAAATTCAACT--------CTCTAAACATATATATTATA----T--------------------------TGGCTTTAGTGATTAGCGCACAGCAGACCTACGA-T----------------GGACG
droGri2	scaffold_15112:3903476-3903761 +		AGCTGCTTATCATCGG-----------CTGAAA---GGATTTGTACGATTCCCAGCTC-CA--------AGCAC----TATAAATACTGTGGCGGAGTCAGTACTTC--TGACAGTTTAAGATTCACATTCGAGTCGGACAACAAGATGAGATCGCAGCCAATACTTGGACTGAGCGCAGTGGTGCTCCTGC------------------TTTGTGCTGGTAAATATTCTTATATATACATAT------------ATTCTATTTTTAAACTTCGCCAATTGACCTCTGATTGTATTGATTATGAGCAGCATCAGCAGTAAATGCTCAGAAGACATATGA-T----------------GGACG
droWil2	scf2_1100000004943:4738490-4738543 +		TATACTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCTGC------------C------------------TTTTTAATTGTAAAGAAACTGATTTGAACCTTT-------------------------------------------------------------------------------------------------------------------AATT
dp5	3:2953371-2953417 +		TTCCGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCACGCAGCGGTAAGTGCACAGACTAGTTATGA-C----------------GGG-A
droPer2	scaffold_52:118813-118875 +		TACGCACTG------------------------------------------------------------------------------------------------------------------------------------------TGGAAGTACGAGCCATGTTGGCATTGTGTTGC------------C------------------AATTTGTATGAAAGTA-----------------------------------------------------------------------------------------------------------------------------------AACTG
droAna3	scaffold_12911:1875365-1875420 +		TGTTTCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCAATGGTTCTGAAGTTATACT--------TTTTTAATTTATAAAGGTTT----T----------------------------------------------------------------------------------C
droBip1	scf7180000396547:1490664-1490701 +		CTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCGCAGATGGGCAGCAGAATTATGA-C----------------GGACA
droKik1	scf7180000302733:23985-24056 -		TAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAGTTGGTATTCTTACC--------TCTGCGATCGACTGCAG--------------------------------------------------TCCACGATAGGGCTTCAGTT------------GGTTAACGC
droFic1	scf7180000454039:106926-107026 +		CTCTGTGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAAATGAATTTGTTTTTATATATTTTAATCAAATTTCTTAACAAATAT-----------------------------------CATCCTTTCAGTTGCGGAAGCGCAACAAACCTACGA-T----------------GGTCG
droEle1	scf7180000491104:1216333-1216411 -		GCTTTGAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAATAAATTTATTGAAATCATTGTA--------CTTTTAATTTTTAGAAACCG----TT--------------------GAATTCGCCATCGACAGC-------------------------------------------T
droRho1	scf7180000779900:546071-546119 +		ATCAGCCTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATCACCTTCAGCAGT------TCATTGCACGTTCGC-T----------------GGATG
droBia1	scf7180000301564:11443-11510 +		TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTAGCCTACATTTTTGTT--------TTCTTAATTTGTGTTTACGT----T---------------------------------------------------------CGT-CATCGCCTTCCTTTAACAGTTG
droTak1	scf7180000415812:88383-88431 +		CAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAACGAATATTTTTTCTTTTT--------TTTTTAAC-----------------------------------------------------------------------TTATAT-T----------------AGTTT
droEug1	scf7180000409672:7392227-7392268 -		TTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAAGCGACAAATGCGCAGCAGAATTATGA-T----------------GGGAG
dm3	chr2R:17575865-17575913 -		CTCTCTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTCCAGTGACAAATGCGCAGCAGAATTATGA-T----------------GGAAG
droSim2	2r:5630117-5630171 +		ACCGGCGTTTCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCCACAGCTGCCGATCCCCAGCGGACATACGA-C----------------GGACA
droSec2	scaffold_49:69068-69132 -		TTTGCGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGTTAAAGAGATTTATAATCTTATT--------TTTGAAATTTTTATTTGATT----T---------------------------------------------------------CGA-T-----------------CACG
droYak3	2L:17479105-17479159 +		ATCGGCATTTCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTCCCTCAGCAGCCGATCCCCAACAGATATACGG-C----------------GGGAA
droEre2	scaffold_4433:1259-1291 +		CAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAAATGATTTTCACTTTTGCT--------CTT--------------------------------------------------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AGCCGAGTGTCGTCGT-----------CTGAGATCTGGAATT--ACGC-TCCCGATTGGCGCGCGCTCAGATTCTTGGTATAAATGCTG--AAAGAGC----TTTCCGGTCAGATCATTTG--CGGAAT-------AGGCAAC---ATGGAATTACGAGCTATACTTGGATTGAGCTGG------------C------------------TTTGTATCGGTAACTAAACTGATTTGCATTCTTGCT--------TTTTTAATTTACATCAGCTT----TC--------------------GATTTCGCCTCCAGCAGTTGATGCACAAAGCACTTACGA-T----------------GGAAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................CGAGCTATACTTGGATTGAG...........................................................................................................................................................................................	20	2	1.50	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................GCAAC---ATGGAATTACGAGCTA........................................................................................................................................................................................................	21	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................TCCGGTCAGATCATTTG--CGG............................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................AGCTATACTTGGATTGAGCTGG------------C------------------........................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................CTGGAATT--ACGC-TCCCGATTGGCGC............................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................CGAGCTATACTTGGATTGAGC..........................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................CGAGCTATACTTGGATTGAGCTGG------------C------------------T.......................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GAGCTATACTTGGATTGAGCT.........................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................TGAGATCTGGAATT--ACGC-TCCCGA...................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................ACGAGCTATACTTGGATTGAG...........................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................ATACTTGGATTGAGCTGG------------C------------------T.......................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................CGAGCTATACTTGGATTGAGCTGG------------C------------------TT......................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTGGAATT--ACGC-TCCCGATTGGCGCG...........................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TTG--CGGAAT-------AGGCAAC---ATGGA...................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TATACTTGGATTGAGCTGG------------C------------------TTTGTATCG...............................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................GAGCTATACTTGGATTGAGCTGG------------...........................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................TACGAGCTATACTTGGATTGA............................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................AGCTATACTTGGATTGAGCTGG------------C------------------TTTG....................................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AATCGAATGTTGTCGTGGTCGTCGTCGTTG-----GGGAAAT--TTTC-TGCCGATTGA----------GAATGC--ATATAAATAGTG--GAGGAGC----TCAATGTTGATAGCATTCGATTGAAAT-------TGGCTGTGCAATGGGTTCACAAGGTATACTTGGATTGAGCTGC---GCTCTCTTGCTGTGTGCAGGTAAATGGA--------TG-AAACTAATCAACACGAAATTCAACT--------CTCTAAACATATATATTATA----T--------------------------TGGCTTTAGTGATTAGCGCACAGCAGACCTACGA-T----------------GGACG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................GGCTGTGCAATGGGTTCA...............................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................CTGTGCAATGGGTTCACAAG...........................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................TGC---GCTCTCTTGCTGTGTG....................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................AGGTATACTTGGATTGAGCTGC---GCT.................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
........................................................................................................................................TGGCTGTGCAATGGGTTCA...............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................ATTAGCGCACAGCAGACCTACG........................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................CAAGGTATACTTGGATTGAGCTGC---GC..................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................ACAGCAGACCTACGA-T----------------GGACG	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................TGAAAT-------TGGCTGTGCAATGGGTTCACA.............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................TGAGCTGC---GCTCTCTTGCTGTGTGCAG.................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AGTGATTAGCGCACAGCA................................	18	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................CACAAGGTATACTTGGATTGAGCTG........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................TGCAATGGGTTCACAAGG..........................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................GC---GCTCTCTTGCTGTGTGCAG.................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................TCGATTGAAAT-------TGGCTGTGC.........................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................T-------TGGCTGTGCAATGGGTT.................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0

droGri2

AGCTGCTTATCATCGG-----------CTGAAA---GGATTTGTACGATTCCCAGCTC-CA--------AGCAC----TATAAATACTGTGGCGGAGTCAGTACTTC--TGACAGTTTAAGATTCACATTCGAGTCGGACAACAAGATGAGATCGCAGCCAATACTTGGACTGAGCGCAGTGGTGCTCCTGC------------------TTTGTGCTGGTAAATATTCTTATATATACATAT------------ATTCTATTTTTAAACTTCGCCAATTGACCTCTGATTGTATTGATTATGAGCAGCATCAGCAGTAAATGCTCAGAAGACATATGA-T----------------GGACG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................AGATGAGATCGCAGCCAATA......................................................................................................................................................................................................	20	2	37.00	74	6	68
........................................................................................................................................................................GACTGAGCGCAGTGGTGCT...............................................................................................................................................................................	19	2	26.50	53	23	30
........................................................................................................................................................................GACTGAGCGCAGTGGTGCTCCTGC------------------T.......................................................................................................................................................	25	2	20.50	41	13	28
....................................................................................................................................................................CTTGGACTGAGCGCAGTGGTGCT...............................................................................................................................................................................	23	2	15.00	30	5	25
.............................................................................................................................................ACAAGATGAGATCGCAGCCAATA......................................................................................................................................................................................................	23	2	15.00	30	7	23
.........................................................................................................................................................................................................................................................................................................................GCAGTAAATGCTCAGAAGACA............................	21	1	15.00	15	12	3
.................................................................................................................................................GATGAGATCGCAGCCAATA......................................................................................................................................................................................................	19	2	13.50	27	9	18
........................................................................................................................................................................GACTGAGCGCAGTGGTGCTCCT............................................................................................................................................................................	22	2	11.00	22	11	11
..............................................................................................................................................CAAGATGAGATCGCAGCCAATA......................................................................................................................................................................................................	22	2	8.00	16	4	12
...................................................................................................................................................................................GTGGTGCTCCTGC------------------TTTGTGCT................................................................................................................................................	21	2	7.50	15	15	0
................................................................................................................................................AGATGAGATCGCAGCCAAT.......................................................................................................................................................................................................	19	2	7.00	14	1	13
.........................................................................................................................................................................................................................................................................................................................GCAGTAAATGCTCAGAAGAC.............................	20	1	7.00	7	7	0
................................................................................................................................................AGATGAGATCGCAGCCAATACTTG..................................................................................................................................................................................................	24	2	7.00	14	8	6
.............................................................................................................................................................GCCAATACTTGGACTGAGCGCA.......................................................................................................................................................................................	22	2	6.50	13	7	6
............................................................................................................................................................................................................................................................................................................................GTAAATGCTCAGAAGACA............................	18	2	6.50	13	13	0
.............................................................................................................................................ACAAGATGAGATCGCAGCCA.........................................................................................................................................................................................................	20	2	6.50	13	4	9
.............................................................................................................................................................GCCAATACTTGGACTGAGC..........................................................................................................................................................................................	19	2	6.50	13	7	6
..........................................................................................................................................................................CTGAGCGCAGTGGTGCTCCTGC------------------T.......................................................................................................................................................	23	2	6.00	12	3	9
....................................................................................................................................................................CTTGGACTGAGCGCAGTGGTG.................................................................................................................................................................................	21	2	6.00	12	6	6
...................................................................................................................................................................................................................................................................................................................GCATCAGCAGTAAATGCTCAGAAGACA............................	27	1	6.00	6	5	1
.................................................................................................................................................................ATACTTGGACTGAGCGCAGTGGTGCT...............................................................................................................................................................................	26	2	6.00	12	3	9
.......................................................................................................................................................................GGACTGAGCGCAGTGGTG.................................................................................................................................................................................	18	2	5.50	11	11	0
......................................................................................................................................................................TGGACTGAGCGCAGTGGTGCT...............................................................................................................................................................................	21	2	5.50	11	4	7
....................................................................................................................................................................CTTGGACTGAGCGCAGTGGTGCTCCT............................................................................................................................................................................	26	2	5.50	11	4	7
...............................................................................................................................................................................................................................................................................................................................AATGCTCAGAAGACATATGA-T----------------G....	22	2	5.50	11	2	9
............................................................................................................................................................................................................................................................................................................................GTAAATGCTCAGAAGACATATGA-T----------------G....	25	2	5.50	11	0	11
................................................................................................................................................AGATGAGATCGCAGCCAATACT....................................................................................................................................................................................................	22	2	5.50	11	3	8
.............................................................................................................................................ACAAGATGAGATCGCAGCC..........................................................................................................................................................................................................	19	2	5.50	11	8	3
............................................................................................................................................................................................................................................................................................................................GTAAATGCTCAGAAGACATATGA-T----------------GGA..	27	2	5.50	11	3	8
........................................................................................................................................................................GACTGAGCGCAGTGGTGCTCCTG...........................................................................................................................................................................	23	2	5.00	10	5	5
................................................................................................................................................................AATACTTGGACTGAGCGCAGTGGTGCT...............................................................................................................................................................................	27	2	5.00	10	0	10
......................................................................................................................................................................TGGACTGAGCGCAGTGGTGCTCCTGC------------------T.......................................................................................................................................................	27	2	5.00	10	4	6
.........................................................................................................................................................................................................................................................................................................................GCAGTAAATGCTCAGAAGACATATG........................	25	1	5.00	5	4	1
....................................................................................................................................................................CTTGGACTGAGCGCAGTG....................................................................................................................................................................................	18	2	4.50	9	9	0
................................................................................................................................................................................GCAGTGGTGCTCCTGC------------------TTTGTGCT................................................................................................................................................	24	2	4.50	9	9	0
...............................................................................................................................................................................................................................................................................................................................AATGCTCAGAAGACATATG........................	19	2	4.50	9	7	2
...................................................................................................................................................................ACTTGGACTGAGCGCAGTGGTGCT...............................................................................................................................................................................	24	2	4.50	9	3	6
...............................................................................................................................................AAGATGAGATCGCAGCCAATA......................................................................................................................................................................................................	21	2	4.00	8	1	7
..................................................................................................................................................ATGAGATCGCAGCCAATACTTG..................................................................................................................................................................................................	22	2	4.00	8	0	8
....................................................................................................................................................................CTTGGACTGAGCGCAGTGGT..................................................................................................................................................................................	20	2	4.00	8	2	6
.................................................................................................................................................GATGAGATCGCAGCCAATACTTG..................................................................................................................................................................................................	23	2	3.50	7	6	1
....................................................................................................................................................................CTTGGACTGAGCGCAGTGGTGCTC..............................................................................................................................................................................	24	2	3.50	7	2	5
.............................................................................................................................................ACAAGATGAGATCGCAGCCAAT.......................................................................................................................................................................................................	22	2	3.50	7	2	5
.............................................................................................................................................ACAAGATGAGATCGCAGCCAATACTTG..................................................................................................................................................................................................	27	2	3.50	7	6	1
...................................................................................................................................................................................GTGGTGCTCCTGC------------------TTTGT...................................................................................................................................................	18	2	3.50	7	7	0
..........................................................................................................................................................GCAGCCAATACTTGGACTGAGCGCA.......................................................................................................................................................................................	25	2	3.50	7	7	0
...................................................................................................................................................................................GTGGTGCTCCTGC------------------TTTGTG..................................................................................................................................................	19	2	3.00	6	6	0
..............................................................................................................................................CAAGATGAGATCGCAGCCAATACT....................................................................................................................................................................................................	24	2	3.00	6	2	4
................................................................................................................................................AGATGAGATCGCAGCCAATACTT...................................................................................................................................................................................................	23	2	3.00	6	3	3
..................................................................................................................................................................................................................................................................................................................................GCTCAGAAGACATATGA-T----------------GGA..	21	2	3.00	6	1	5
.........................................................................................................................................................................................................................................................................................................................GCAGTAAATGCTCAGAAGACAT...........................	22	1	3.00	3	0	3
.....................................................................................................................................................................................................................................................................................................................ATCAGCAGTAAATGCTCAGAAGACA............................	25	1	3.00	3	3	0
................................................................................................................................................AGATGAGATCGCAGCCAATACTTGGACT..............................................................................................................................................................................................	28	2	3.00	6	1	5
........................................................................................................................................................................GACTGAGCGCAGTGGTGCTCCTGC------------------TTT.....................................................................................................................................................	27	2	3.00	6	2	4
.........................................................................................................................................................................................................................................................................................................................GCAGTAAATGCTCAGAAG...............................	18	1	3.00	3	3	0
.......................................................................................................................................................................GGACTGAGCGCAGTGGTGCT...............................................................................................................................................................................	20	2	3.00	6	5	1
.............................................................................................................................................ACAAGATGAGATCGCAGCCAATACT....................................................................................................................................................................................................	25	2	3.00	6	2	4
...................................................................................................................................................................................................................................................................................................................GCATCAGCAGTAAATGCTCAGAAGAC.............................	26	1	3.00	3	3	0
........................................................................................................................................................................GACTGAGCGCAGTGGTGCTCCTGC------------------TT......................................................................................................................................................	26	2	3.00	6	0	6
............................................................................................................................................................................................................................................................................................................................GTAAATGCTCAGAAGACATA..........................	20	2	3.00	6	3	3
.....................................................................................................................................................................TTGGACTGAGCGCAGTGGTG.................................................................................................................................................................................	20	2	3.00	6	6	0
.................................................................................................................................................................ATACTTGGACTGAGCGCAGTG....................................................................................................................................................................................	21	2	2.50	5	3	2
................................................................................................................................................................................GCAGTGGTGCTCCTGC------------------TTTGT...................................................................................................................................................	21	2	2.50	5	5	0
.................................................................................................................................................................ATACTTGGACTGAGCGCAGTGGTG.................................................................................................................................................................................	24	2	2.50	5	3	2
..........................................................................................................................................................................CTGAGCGCAGTGGTGCTCCTGC------------------TTTGTGCT................................................................................................................................................	30	2	2.50	5	0	5
.......................................................................................................................................................................GGACTGAGCGCAGTGGTGCTCCTGC------------------T.......................................................................................................................................................	26	2	2.50	5	5	0
...........................................................................................................................................................CAGCCAATACTTGGACTGAGC..........................................................................................................................................................................................	21	2	2.50	5	3	2
..........................................................................................................................................................GCAGCCAATACTTGGACTGAGC..........................................................................................................................................................................................	22	2	2.50	5	5	0
...................................................................................................................................................................................GTGGTGCTCCTGC------------------TTTGTGCTGCA.............................................................................................................................................	24	2	2.50	5	5	0
...............................................................................................................................................................................................................................................................................................................................AATGCTCAGAAGACATATGA-T----------------GGA..	24	2	2.50	5	3	2
...............................................................................................................................................AAGATGAGATCGCAGCCAAT.......................................................................................................................................................................................................	20	2	2.50	5	0	5
.........................................................................................................................................................................ACTGAGCGCAGTGGTGCT...............................................................................................................................................................................	18	2	2.50	5	3	2
.........................................................................................................................................................CGCAGCCAATACTTGGACTGAGC..........................................................................................................................................................................................	23	2	2.00	4	4	0
......................................................................................................................................................................TGGACTGAGCGCAGTGGTG.................................................................................................................................................................................	19	2	2.00	4	4	0
......................................................................................................................................................................................................................................................................................................................TCAGCAGTAAATGCTCAGAAGACA............................	24	1	2.00	2	2	0
............................................................................................................................................................................................................................................................................................................................GTAAATGCTCAGAAGACATATG........................	22	2	2.00	4	3	1
...................................................................................................................................................................ACTTGGACTGAGCGCAGTGGTG.................................................................................................................................................................................	22	2	2.00	4	3	1
...................................................................................................................................................................................................................................................................................................................GCATCAGCAGTAAATGCTCAGAA................................	23	1	2.00	2	2	0
................................................................................................................................................................AATACTTGGACTGAGCGCA.......................................................................................................................................................................................	19	2	2.00	4	2	2
.............................................................................................................................................ACAAGATGAGATCGCAGC...........................................................................................................................................................................................................	18	2	2.00	4	4	0
...................................................................................................................................................................................................................................................................................................................GCATCAGCAGTAAATGCTCA...................................	20	1	2.00	2	2	0
................................................................................................................................................................AATACTTGGACTGAGCGCAGT.....................................................................................................................................................................................	21	2	2.00	4	3	1
...........................................................................................................................................CAACAAGATGAGATCGCAGCCA.........................................................................................................................................................................................................	22	2	2.00	4	0	4
.....................................................................................................................................................AGATCGCAGCCAATACTTGGACTG.............................................................................................................................................................................................	24	2	2.00	4	4	0
.........................................................................................................................................................................................................................................................................................................................GCAGTAAATGCTCAGAAGACATA..........................	23	1	2.00	2	0	2
..................................................................................................................................................ATGAGATCGCAGCCAATACT....................................................................................................................................................................................................	20	2	2.00	4	0	4
....................................................................................................................................................................CTTGGACTGAGCGCAGTGGTGCTCCTG...........................................................................................................................................................................	27	2	2.00	4	2	2
....................................................................................................................................................................CTTGGACTGAGCGCAGTGGTGC................................................................................................................................................................................	22	2	2.00	4	4	0
...........................................................................................................................................................................................................................................................................................................................AGTAAATGCTCAGAAGACATATGA-T----------------G....	26	1	2.00	2	2	0
............................................................................................................................................................................GAGCGCAGTGGTGCTCCTGC------------------TTTG....................................................................................................................................................	24	2	2.00	4	4	0
....................................................................................................................................................................................TGGTGCTCCTGC------------------TTTGTGCT................................................................................................................................................	20	2	2.00	4	4	0
................................................................................................................................................................................................................................................................................................................................ATGCTCAGAAGACATATGA-T----------------G....	21	2	2.00	4	0	4
...............................................................................................................................................................................................................................................................................................................................AATGCTCAGAAGACATATGA-T----------------GGACG	26	2	2.00	4	2	2
..................................................................................................................................................ATGAGATCGCAGCCAATACTTGGA................................................................................................................................................................................................	24	2	2.00	4	4	0
.............................................................................................................................................................GCCAATACTTGGACTGAGCGCAGTG....................................................................................................................................................................................	25	2	2.00	4	0	4
..........................................................................................................................................................................................................................................................................................................................CAGTAAATGCTCAGAAGACATATG........................	24	1	2.00	2	0	2
...................................................................................................................................................................................................................................................................................................................GCATCAGCAGTAAATGCTC....................................	19	1	2.00	2	2	0
...................................................................................................................................................................ACTTGGACTGAGCGCAGTG....................................................................................................................................................................................	19	2	2.00	4	1	3
..................................................................................................................................................................................AGTGGTGCTCCTGC------------------TTTGTGCT................................................................................................................................................	22	2	2.00	4	4	0
......................................................................................................................................................................................................................................................................................................................TCAGCAGTAAATGCTCAGAAGACATATG........................	28	1	2.00	2	0	2
...........................................................................................................................................................................................................................................................................................................................AGTAAATGCTCAGAAGACA............................	19	1	2.00	2	1	1
......................................................................................................................................................GATCGCAGCCAATACTTG..................................................................................................................................................................................................	18	2	1.50	3	3	0
..........................................................................................................................................................................CTGAGCGCAGTGGTGCTCCTGC------------------........................................................................................................................................................	22	2	1.50	3	1	2
....................................................................................................................................................................CTTGGACTGAGCGCAGTGGTGCTCCTGC------------------T.......................................................................................................................................................	29	2	1.50	3	0	3
................................................................................................................................................................................GCAGTGGTGCTCCTGC------------------TTTGTGCTGCA.............................................................................................................................................	27	2	1.50	3	3	0
................................................................................................................................................AGATGAGATCGCAGCCAATACTTGGA................................................................................................................................................................................................	26	2	1.50	3	3	0
.....................................................................................................................................................................................GGTGCTCCTGC------------------TTTGTGCT................................................................................................................................................	19	2	1.50	3	3	0
.......................................................................................................................................................................GGACTGAGCGCAGTGGTGCTC..............................................................................................................................................................................	21	2	1.50	3	3	0
.......................................................................................................................................................................GGACTGAGCGCAGTGGTGCTCC.............................................................................................................................................................................	22	2	1.50	3	3	0
................................................................................................................................................................................................................................................................................................................................ATGCTCAGAAGACATATGA-T----------------GGA..	23	2	1.50	3	2	1
................................................................................................................................................................................GCAGTGGTGCTCCTGC------------------TTTG....................................................................................................................................................	20	2	1.50	3	3	0
.....................................................................................................................................................AGATCGCAGCCAATACTTG..................................................................................................................................................................................................	19	2	1.50	3	3	0
..............................................................................................................................................................................GCGCAGTGGTGCTCCTGC------------------TTTGTGCT................................................................................................................................................	26	2	1.50	3	3	0
......................................................................................................................................................................................GTGCTCCTGC------------------TTTGTGCT................................................................................................................................................	18	2	1.50	3	3	0
........................................................................................................................................................................GACTGAGCGCAGTGGTGCTCCTGC------------------........................................................................................................................................................	24	2	1.50	3	1	2
.......................................................................................................................................................................GGACTGAGCGCAGTGGTGCTCCT............................................................................................................................................................................	23	2	1.50	3	3	0
...................................................................................................................................................................................GTGGTGCTCCTGC------------------TTTGTGC.................................................................................................................................................	20	2	1.50	3	3	0
...........................................................................................................................................CAACAAGATGAGATCGCAGC...........................................................................................................................................................................................................	20	2	1.50	3	1	2
...................................................................................................................................................................................GTGGTGCTCCTGC------------------TTTGTGCTGC..............................................................................................................................................	23	2	1.50	3	3	0
............................................................................................................................................................................................................................................................................................................................GTAAATGCTCAGAAGACATAT.........................	21	2	1.50	3	0	3
...............................................................................................................................................................................................................................................................................................................................AATGCTCAGAAGACATATGA-T----------------.....	21	2	1.50	3	0	3
..............................................................................................................................................................................................................................................................................................................................AAATGCTCAGAAGACATATGA-T----------------G....	23	2	1.50	3	1	2
................................................................................................................................................................AATACTTGGACTGAGCGCAGTG....................................................................................................................................................................................	22	2	1.50	3	2	1
..................................................................................................................................................................................AGTGGTGCTCCTGC------------------TTTG....................................................................................................................................................	18	2	1.50	3	3	0
..............................................................................................................................................CAAGATGAGATCGCAGCCA.........................................................................................................................................................................................................	19	2	1.50	3	0	3
.......................................................................................................................................................................GGACTGAGCGCAGTGGTGC................................................................................................................................................................................	19	2	1.50	3	3	0
.....................................................................................................................................................AGATCGCAGCCAATACTTGGA................................................................................................................................................................................................	21	2	1.50	3	3	0
..........................................................................................................................................................GCAGCCAATACTTGGACTG.............................................................................................................................................................................................	19	2	1.50	3	3	0
.............................................................................................................................................................................AGCGCAGTGGTGCTCCTGC------------------TTTGTGCT................................................................................................................................................	27	2	1.50	3	3	0
................................................................................................................................................AGATGAGATCGCAGCCAATAC.....................................................................................................................................................................................................	21	2	1.50	3	2	1
..............................................................................................................................................................................................................................................................................................................................AAATGCTCAGAAGACATATGA-T----------------GGA..	25	2	1.50	3	2	1
............................................................................................................................................................AGCCAATACTTGGACTGAGC..........................................................................................................................................................................................	20	2	1.50	3	1	2
............................................................................................................................................AACAAGATGAGATCGCAGCC..........................................................................................................................................................................................................	20	2	1.50	3	2	1
.............................................................................................................................................................................AGCGCAGTGGTGCTCCTG...........................................................................................................................................................................	18	2	1.50	3	3	0
.................................................................................................................................................GATGAGATCGCAGCCAAT.......................................................................................................................................................................................................	18	2	1.50	3	3	0
...........................................................................................................................................CAACAAGATGAGATCGCAGCCAATA......................................................................................................................................................................................................	25	2	1.50	3	0	3
..........................................................................................................................................ACAACAAGATGAGATCGCAGCC..........................................................................................................................................................................................................	22	2	1.00	2	1	1
...................................................................................................................................................................................................................................................................................................................GCATCAGCAGTAAATGCTCAGAAG...............................	24	1	1.00	1	1	0
.............................................................................................................................................ACAAGATGAGATCGCAGCCAATACTT...................................................................................................................................................................................................	26	2	1.00	2	2	0
.......................................................................................................................................................ATCGCAGCCAATACTTGGACTGAGCGCA.......................................................................................................................................................................................	28	2	1.00	2	2	0
............................................................................................................................................................................GAGCGCAGTGGTGCTCCTGC------------------TTT.....................................................................................................................................................	23	2	1.00	2	2	0
........................................................................................................................................................................................................................................................................................................................AGCAGTAAATGCTCAGAAGACA............................	22	1	1.00	1	1	0
........................................................................................................................................................................GACTGAGCGCAGTGGTGC................................................................................................................................................................................	18	2	1.00	2	2	0
......................................................................................................................................................................................................................................................................................................................TCAGCAGTAAATGCTCAGAAGACATAT.........................	27	1	1.00	1	0	1
.......................................................................................................................................................................................................................................................................................................................CAGCAGTAAATGCTCAGAAGACA............................	23	1	1.00	1	0	1
.........................................................................................................................................................................................................................................................................................................................GCAGTAAATGCTCAGAAGACATATGA-T----------------G....	28	1	1.00	1	1	0
.................................................................................................................................................GATGAGATCGCAGCCAATACTTGGA................................................................................................................................................................................................	25	2	1.00	2	2	0
..................................................................................................................................................................................................................................................................................................................................GCTCAGAAGACATATGA-T----------------GGAC.	22	2	1.00	2	0	2
.....................................................................................................................................................................TTGGACTGAGCGCAGTGGT..................................................................................................................................................................................	19	2	1.00	2	1	1
............................................................................................................................................AACAAGATGAGATCGCAGC...........................................................................................................................................................................................................	19	2	1.00	2	2	0
................................................................................................................................TTCGAGTCGGACAACAAGATGAGA..................................................................................................................................................................................................................	24	2	1.00	2	0	2
.................................................................................................................................................GATGAGATCGCAGCCAATACTT...................................................................................................................................................................................................	22	2	1.00	2	2	0
..........................................................................................................................................................................................................................................................................................................................CAGTAAATGCTCAGAAGACA............................	20	1	1.00	1	1	0
............................................................................................................................................................................GAGCGCAGTGGTGCTCCTGC------------------TTTGTG..................................................................................................................................................	26	2	1.00	2	2	0
.................................................................................................................................................................................CAGTGGTGCTCCTGC------------------TTTGT...................................................................................................................................................	20	2	1.00	2	2	0
......................................................................................................................................................GATCGCAGCCAATACTTGGA................................................................................................................................................................................................	20	2	1.00	2	2	0
.............................................................................................................................................................................AGCGCAGTGGTGCTCCTGC------------------TTTGTG..................................................................................................................................................	25	2	1.00	2	2	0
..........................................................................................................................................ACAACAAGATGAGATCGCAGC...........................................................................................................................................................................................................	21	2	1.00	2	0	2
......................................................................................................................................................................................GTGCTCCTGC------------------TTTGTGCTG...............................................................................................................................................	19	2	1.00	2	2	0
...................................................................................................................................................................................................................................................................................................................................CTCAGAAGACATATGA-T----------------GGA..	20	2	1.00	2	1	1
.........................................................................................................................................................................ACTGAGCGCAGTGGTGCTCCTGC------------------TT......................................................................................................................................................	25	2	1.00	2	1	1
..............................................................................................................................................................CCAATACTTGGACTGAGC..........................................................................................................................................................................................	18	2	1.00	2	2	0
.................................................................................................................................................................ATACTTGGACTGAGCGCAGTGGT..................................................................................................................................................................................	23	2	1.00	2	0	2
........................................................................................................................................................................GACTGAGCGCAGTGGTGCTCC.............................................................................................................................................................................	21	2	1.00	2	2	0
.......................................................................................................................................................................................................................................................................................................................CAGCAGTAAATGCTCAGAAGACATAT.........................	26	1	1.00	1	1	0
....................................................................................................................................................................................................................................................................................................................CATCAGCAGTAAATGCTCA...................................	19	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................GCATCAGCAGTAAATGCTCAA..................................	21	1	1.00	1	1	0
......................................................................................................................................................................TGGACTGAGCGCAGTGGTGCTCCT............................................................................................................................................................................	24	2	1.00	2	2	0
.....................................................................................................................................................................TTGGACTGAGCGCAGTGGTGCTC..............................................................................................................................................................................	23	2	1.00	2	1	1
..........................................................................................................................................................GCAGCCAATACTTGGACTGAGCGCAGTG....................................................................................................................................................................................	28	2	1.00	2	0	2
........................................................................................................................................................TCGCAGCCAATACTTGGACT..............................................................................................................................................................................................	20	2	1.00	2	2	0
.......................................................................................................................................................................................................................................................................................................................CAGCAGTAAATGCTCAGAAGAC.............................	22	1	1.00	1	1	0
.................................................................................................................................................................ATACTTGGACTGAGCGCAGTGGTGCTCC.............................................................................................................................................................................	28	2	1.00	2	0	2
...................................................................................................................................................................ACTTGGACTGAGCGCAGTGGTGCTC..............................................................................................................................................................................	25	2	1.00	2	2	0
............................................................................................................................................................................GAGCGCAGTGGTGCTCCTGC------------------T.......................................................................................................................................................	21	2	1.00	2	2	0
......................................................................................................................................................................TGGACTGAGCGCAGTGGTGCTCCTG...........................................................................................................................................................................	25	2	1.00	2	1	1
..................................................................................................................................................ATGAGATCGCAGCCAATA......................................................................................................................................................................................................	18	2	1.00	2	2	0
..............................................................................................................................................................................GCGCAGTGGTGCTCCTGC------------------T.......................................................................................................................................................	19	2	1.00	2	2	0
...............................................................................................................................................AAGATGAGATCGCAGCCAATACT....................................................................................................................................................................................................	23	2	1.00	2	0	2
.......................................................................................................................................................................................................................................................................................................................CAGCAGTAAATGCTCAGAAGACATA..........................	25	1	1.00	1	1	0
..........................................................................................................................................................GCAGCCAATACTTGGACTGAG...........................................................................................................................................................................................	21	2	1.00	2	2	0
.....................................................................................................................................................AGATCGCAGCCAATACTTGGACT..............................................................................................................................................................................................	23	2	1.00	2	2	0
........................................................................................................................................................................GACTGAGCGCAGTGGTGCTCCTGC------------------TTTGT...................................................................................................................................................	29	2	1.00	2	0	2
...................................................................................................................................................................ACTTGGACTGAGCGCAGTGGTGCTCCT............................................................................................................................................................................	27	2	1.00	2	1	1
..................................................................................................................................................................................................................................................................................................................................GCTCAGAAGACATATGA-T----------------GGACG	23	2	1.00	2	0	2
.................................................................................................................................................................ATACTTGGACTGAGCGCAGT.....................................................................................................................................................................................	20	2	1.00	2	0	2
...........................................................................................................................................................................................................................................................................................................................AGTAAATGCTCAGAAGACATATGA-T----------------.....	25	1	1.00	1	0	1
........................................................................................................................GATTCACATTCGAGTCGGACA.............................................................................................................................................................................................................................	21	2	1.00	2	2	0
..............................................................................................................................................................................................................................................................................................................................AAATGCTCAGAAGACATATGA-T----------------GG...	24	2	1.00	2	0	2
............................................................................................................................................................................GAGCGCAGTGGTGCTCCTGC------------------TT......................................................................................................................................................	22	2	1.00	2	2	0
...................................................................................................................................................................................................................................................................................................................GCATCAGCAGTAAATGCTCAGA.................................	22	1	1.00	1	1	0
...........................................................................................................................................................................TGAGCGCAGTGGTGCTCCTGC------------------T.......................................................................................................................................................	22	2	1.00	2	1	1
..........................................................................................................................................ACAACAAGATGAGATCGCAGCCAAT.......................................................................................................................................................................................................	25	2	1.00	2	0	2
...............................................................................................................................................................CAATACTTGGACTGAGCGCA.......................................................................................................................................................................................	20	2	1.00	2	2	0
.................................................................................................................................................GATGAGATCGCAGCCAATACT....................................................................................................................................................................................................	21	2	1.00	2	2	0
.................................................................................................................................................................ATACTTGGACTGAGCGCA.......................................................................................................................................................................................	18	2	1.00	2	2	0
....................................................................................................................................................................................................................................................................................................................CATCAGCAGTAAATGCTCAGAA................................	22	1	1.00	1	1	0
............................................................................................................................................AACAAGATGAGATCGCAGCCA.........................................................................................................................................................................................................	21	2	1.00	2	1	1
..............................................................................................................................................................................GCGCAGTGGTGCTCCTGC------------------TTTGTGCTG...............................................................................................................................................	27	2	1.00	2	2	0
............................................................................................................................................................................GAGCGCAGTGGTGCTCCTGC------------------TTTGTGCT................................................................................................................................................	28	2	1.00	2	2	0
......................................................................................................................................................................................................................................................................................................................TCAGCAGTAAATGCTCAGAAGAC.............................	23	1	1.00	1	0	1
..................................................................................................................................................ATGAGATCGCAGCCAATAC.....................................................................................................................................................................................................	19	2	1.00	2	2	0
..........................................................................................................................................................GCAGCCAATACTTGGACT..............................................................................................................................................................................................	18	2	1.00	2	2	0
.........................................................................................................................................................................ACTGAGCGCAGTGGTGCTCCTGC------------------T.......................................................................................................................................................	24	2	1.00	2	1	1
..............................................................................................................................................................................................................................................................................................................................AAATGCTCAGAAGACATATGA-T----------------GGACG	27	2	1.00	2	2	0
......................................................................................................................................................................TGGACTGAGCGCAGTGGTGC................................................................................................................................................................................	20	2	1.00	2	2	0
............................................................................................................................................AACAAGATGAGATCGCAG............................................................................................................................................................................................................	18	2	1.00	2	2	0
............................................................................................................................................................AGCCAATACTTGGACTGAGCGC........................................................................................................................................................................................	22	2	1.00	2	2	0
................................................................................................................................................................AATACTTGGACTGAGCGCAGTGGT..................................................................................................................................................................................	24	2	1.00	2	0	2
.......................................................................................................................................................ATCGCAGCCAATACTTGGACTG.............................................................................................................................................................................................	22	2	1.00	2	2	0
.....................................................................................................................................................................TTGGACTGAGCGCAGTGGTGCT...............................................................................................................................................................................	22	2	1.00	2	1	1
........................................................................................................................................................................................................................................................................................................................AGCAGTAAATGCTCAGAAGACATATGA-T----------------.....	28	1	1.00	1	0	1
..............................................................................................................................................CAAGATGAGATCGCAGCCAATACTTG..................................................................................................................................................................................................	26	2	1.00	2	2	0
..................................................................................................................................................................TACTTGGACTGAGCGCAGT.....................................................................................................................................................................................	19	2	1.00	2	2	0
.......................................................................................................................................................................................................................................................................................................................CAGCAGTAAATGCTCAGAAGACAT...........................	24	1	1.00	1	0	1
...........................................................................................................................................................................TGAGCGCAGTGGTGCTCCTGC------------------TTTGTG..................................................................................................................................................	27	2	0.50	1	1	0
.......................................................................................................................................................ATCGCAGCCAATACTTGGACT..............................................................................................................................................................................................	21	2	0.50	1	1	0
.....................................................................................................................................................................TTGGACTGAGCGCAGTGGTGCTCCTGC------------------TT......................................................................................................................................................	29	2	0.50	1	0	1
.........................................................................................................................................................................ACTGAGCGCAGTGGTGCTCCTGC------------------TTT.....................................................................................................................................................	26	2	0.50	1	0	1
..............................................................................................................................................................................................................................................................................................................................AAATGCTCAGAAGACATATG........................	20	2	0.50	1	0	1
......................................................................................................................AAGATTCACATTCGAGTCG.................................................................................................................................................................................................................................	19	2	0.50	1	1	0
...................................................................................................................................................................................................................................................................................................................................CTCAGAAGACATATGA-T----------------GGAC.	21	2	0.50	1	0	1
.......................................................................................................................................................ATCGCAGCCAATACTTGGACTGAGC..........................................................................................................................................................................................	25	2	0.50	1	1	0
.................................................................................................................................................................ATACTTGGACTGAGCGCAGTGG...................................................................................................................................................................................	22	2	0.50	1	0	1
................................................................................................................................................................AATACTTGGACTGAGCGCAGTGG...................................................................................................................................................................................	23	2	0.50	1	0	1
.....................................................................................................................................................................................GGTGCTCCTGC------------------TTTGTGC.................................................................................................................................................	18	2	0.50	1	1	0
.................................................................................................................................................................................CAGTGGTGCTCCTGC------------------TTTGTG..................................................................................................................................................	21	2	0.50	1	1	0
............................................................................................................................................................................................................................................................................................................................GTAAATGCTCAGAAGACAT...........................	19	2	0.50	1	0	1
...............................................................................................................................................................................CGCAGTGGTGCTCCTGC------------------TTTGTG..................................................................................................................................................	23	2	0.50	1	1	0
.....................................................................................................................................................................TTGGACTGAGCGCAGTGGTGCTCCT............................................................................................................................................................................	25	2	0.50	1	1	0
..........................................................................................................................................................................CTGAGCGCAGTGGTGCTCCTGC------------------TTTGTG..................................................................................................................................................	28	2	0.50	1	0	1
.........................................................................................................................................................................ACTGAGCGCAGTGGTGCTCCTGC------------------TTTGT...................................................................................................................................................	28	2	0.50	1	0	1
.................................................................................................................................................................ATACTTGGACTGAGCGCAGTGGTGC................................................................................................................................................................................	25	2	0.50	1	1	0
..............................................................................................................................................................CCAATACTTGGACTGAGCGCAGTGGTG.................................................................................................................................................................................	27	2	0.50	1	1	0
.................................................................................................................................................GATGAGATCGCAGCCAATACTTGGAC...............................................................................................................................................................................................	26	2	0.50	1	0	1

droWil2

TATACTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCTGC------------C------------------TTTTTAATTGTAAAGAAACTGATTTGAACCTTT-------------------------------------------------------------------------------------------------------------------AATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

TTCCGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCACGCAGCGGTAAGTGCACAGACTAGTTATGA-C----------------GGG-A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................CCCACGCAGCGGTAAGTGCACAGAC................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TACGCACTG------------------------------------------------------------------------------------------------------------------------------------------TGGAAGTACGAGCCATGTTGGCATTGTGTTGC------------C------------------AATTTGTATGAAAGTA-----------------------------------------------------------------------------------------------------------------------------------AACTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

TGTTTCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCAATGGTTCTGAAGTTATACT--------TTTTTAATTTATAAAGGTTT----T----------------------------------------------------------------------------------C	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

CTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCGCAGATGGGCAGCAGAATTATGA-C----------------GGACA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TAACTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAGTTGGTATTCTTACC--------TCTGCGATCGACTGCAG--------------------------------------------------TCCACGATAGGGCTTCAGTT------------GGTTAACGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTCTGTGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAAATGAATTTGTTTTTATATATTTTAATCAAATTTCTTAACAAATAT-----------------------------------CATCCTTTCAGTTGCGGAAGCGCAACAAACCTACGA-T----------------GGTCG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCTTTGAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAATAAATTTATTGAAATCATTGTA--------CTTTTAATTTTTAGAAACCG----TT--------------------GAATTCGCCATCGACAGC-------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATCAGCCTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATCACCTTCAGCAGT------TCATTGCACGTTCGC-T----------------GGATG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTAGCCTACATTTTTGTT--------TTCTTAATTTGTGTTTACGT----T---------------------------------------------------------CGT-CATCGCCTTCCTTTAACAGTTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAACGAATATTTTTTCTTTTT--------TTTTTAAC-----------------------------------------------------------------------TTATAT-T----------------AGTTT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAAGCGACAAATGCGCAGCAGAATTATGA-T----------------GGGAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

CTCTCTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTCCAGTGACAAATGCGCAGCAGAATTATGA-T----------------GGAAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................TGACAAATGCGCAGCAGAATTATGA-......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................TGACAAATGCGCAGCAGAATTATGA-T----------------.....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................TGACAAATGCGCAGCAGAATTATGA-T----------------G....	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACCGGCGTTTCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCCACAGCTGCCGATCCCCAGCGGACATACGA-C----------------GGACA

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

TTTGCGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGTTAAAGAGATTTATAATCTTATT--------TTTGAAATTTTTATTTGATT----T---------------------------------------------------------CGA-T-----------------CACG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ATCGGCATTTCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTCCCTCAGCAGCCGATCCCCAACAGATATACGG-C----------------GGGAA

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

CAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAAATGATTTTCACTTTTGCT--------CTT--------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

TCGGCTCACAGCAGCAGACTCTAGACCTTAATGCGAGGGCTAACCGCGCGCGAGTCTAAGAACCATATTTACGACTTTCTCGAAAGGCCAGTCTAGTAAACGCCTTATCCGTTGTACCTTAATGCTCGATATGAACCTAACTCGACCGAAACATAGCCATTGATTTGACTAAACGTAAGAACGAAAAAATTAAATGTAGTCGAAAGCTAAAGCGGAGGTCGTCAACTACGTGTTTCGTGAATGCTACCTTC **********************************************************************************************************((...((((.((((((((.......)))).))))..............)).))...)).**********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060682 9x140_0-2h_embryos_total	SRR060667 160_females_carcasses_total	SRR060684 140x9_0-2h_embryos_total	M027 male body	M028 head	SRR060687 9_0-2h_embryos_total	SRR060689 160x9_testes_total	SRR060686 Argx9_0-2h_embryos_total	M047 female body	SRR060681 Argx9_testes_total	SRR060654 160x9_ovaries_total	SRR060671 9x160_males_carcasses_total	SRR060675 140x9_ovaries_total	SRR060676 9xArg_ovaries_total	SRR060688 160_ovaries_total	V053 head	SRR060679 140x9_testes_total	GSM1528803 follicle cells	SRR060662 9x160_0-2h_embryos_total	SRR060665 9_females_carcasses_total	SRR060659 Argentina_testes_total	SRR060661 160x9_0-2h_embryos_total	V047 embryo	SRR060685 9xArg_0-2h_embryos_total	SRR060663 160_0-2h_embryos_total	SRR060680 9xArg_testes_total	V116 male body	SRR060683 160_testes_total
..................................................................................................................................................................................................TGCAGTAGAAAGCTAAAACG.....................................	20	3	16	2.63	42	18	0	6	0	0	3	6	4	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	1	0
.................................................................................................................................................................................................ATGCAGTAGAAAGCTAAAACG.....................................	21	3	7	2.29	16	4	0	3	0	0	1	0	1	1	0	0	0	0	0	0	0	1	0	2	1	1	1	0	0	0	0	0	0
...........................................................................................................................................ACTCGACCGGAACCTAGCCTT...........................................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................GGCTAACCGCGCGCGAGTCT..................................................................................................................................................................................................	20	0	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TTCTCGAAAGGCCAGTCTAGT..........................................................................................................................................................	21	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TCTCGAAAGGCCAGTCTAGTA.........................................................................................................................................................	21	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAACTACGTGTTTCGTGAATG........	21	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GAGTCTAAGAACCATATTTAC...................................................................................................................................................................................	21	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATGCAGTAGAAAGCTAAAGCG.....................................	21	2	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CGCGCGCGAGTCTAAGGGCCA..........................................................................................................................................................................................	21	2	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAGCAGCAGACTCTAGACCTT..............................................................................................................................................................................................................................	21	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAGCAGCAGGCTCTAGACCTT..............................................................................................................................................................................................................................	21	1	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TACCTTAATGCTCGATATGAA....................................................................................................................	21	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GCGCGAGTCTAAGAACCAT.........................................................................................................................................................................................	19	0	2	0.50	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AGCAGCAGACTCTAGACCTTA.............................................................................................................................................................................................................................	21	0	2	0.50	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GCCAGTCTAGTAAACGCCTTATCCGT...........................................................................................................................................	26	0	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AGGGCTAACCGCGCGCGAGT....................................................................................................................................................................................................	20	0	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AGCAGCAGACTCTAGACCT...............................................................................................................................................................................................................................	19	0	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAACCACGTGTTTCGTGAATAC.......	22	2	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GTTTCGTGAGTGCTACCCCC	20	3	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GTTTCGTGAGTGCTACCC..	18	2	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TGTAGTAGAAAGCTAAAACG.....................................	20	2	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ACTCGACCGGAACCTAGC..............................................................................................	18	2	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GTTTCGTCAAAGCTACCTT.	19	2	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TGTAGTAGAATGCTAAAACG.....................................	20	3	13	0.15	2	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................ATATGCAGTAGAAAGCTAA.........................................	19	3	20	0.15	3	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TTGTACCATCATGCTCGCT.........................................................................................................................	19	3	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................TGTAGTGGAACGCCAAAGCG.....................................	20	3	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................ATATGCAGTAGAAAGCTAAA........................................	20	3	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TCGAAAGCCCAGTGTAGTA.........................................................................................................................................................	19	2	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................TGTAGTAGAATGCTAAATC......................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dvi_4924

scaffold_12875:1810196-1810346 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-8.4	-7.4