ID:

dvi_4923

 Coordinate:

scaffold_12875:1809428-1809578 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.4 -1.1 -1.0

Flybase annnotation

exon [dvir_GLEANR_6677:3]; CDS [Dvir\GJ21309-cds]; intron [Dvir\GJ21309-in]

No Repeatable elements found

mature
  1. scaffold_12875:1807649-1807666 +
  2. dvi_4923  scaffold_12875:1809532-1809549 +
star
  1. scaffold_12875:1807618-1807639 +
  2. dvi_4923  scaffold_12875:1809501-1809522 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATGGCAACGTCATCACCTCAGGCAGCCCCAATGGACGTGGTCCACAACGCGTAAGTGATACATAACATAGATAACAAATAGAAAACATTGAATAATTTTATTCTTTGCAGTATTCCGGTTAATCCTAGATGGAGAAACAATCGTAAAAATCAAATGTATAAAATAGGGCAGTAATTATTATTGCTTAGTTAACTCCTAAATCAAATAAATAAGTAAATAACGACCTATATTCTGTTTTTATAATTGAATTA
***************************************************************************************************************************((((....................................)))).....******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 M047
female body
 SRR060664
9_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 M027
male body		 SRR060666
160_males_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060671
9x160_males_carcasses_total
 V053
head
 SRR060672
9x160_females_carcasses_total
 M028
head
 M061
embryo
 SRR060655
9x160_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 V116
male body		 SRR060684
140x9_0-2h_embryos_total
..........................................................................................................................................................TGTATAAAATAGGGCAGT............................................................................... 18 0 2 2.00 4 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................CCTAGATGGAGAAACAATCGTA.......................................................................................................... 22 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GGTTAATCCTAGATGGAGAAA.................................................................................................................. 21 0 2 1.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GTAATTATTATTGCTTAGTT............................................................. 20 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TAATCCTAGATGGAGAAA.................................................................................................................. 18 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GTCCGAATGGACGTGGTCTA............................................................................................................................................................................................................... 20 3 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AAAATGTATAAAATAGGGCAGTAATTA.......................................................................... 27 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AACTCCTAAATCAAATAAATAAGT..................................... 24 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................ATAAAATAGGGCAGTAATTAT......................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TATTGCTTAGTTAACTCCTAAATCAAAT............................................. 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ATGGCAACGTCATCACCTC........................................................................................................................................................................................................................................ 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CATTGAATAATTTTATTCTTTGCAGT............................................................................................................................................ 26 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CATCACCTCAGGCAGCCCCA............................................................................................................................................................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GCTTAGTTAACTCCTAAATC................................................. 20 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCGGTTAATCCTAGATGGAGAAA.................................................................................................................. 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GGTTAATCCTAGATGGAGAAACA................................................................................................................ 23 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................AAATAAGTAAATAACGACC.......................... 19 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAATAACGACCTATATTCTGTT............... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATGTATAAAATAGGGCAGT............................................................................... 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGTATAAAATAGGGCAGTAATC........................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GTTAATCCTAGATGGAGAAA.................................................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTTCCGGTTAATCCTAGATGGAGAAACA................................................................................................................ 28 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CTAGATGGAGAAACAATCGTAAAA....................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GCAACGTCATCACCTCAGGC.................................................................................................................................................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................ATTCCGGTTAATCCTAGATGGAGAA................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................TAGATGGAGAAACAATCGT........................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GTATAAAATAGGGCAGTAATT........................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CGGTTAATCCTAGATGGAGAAACAAT.............................................................................................................. 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AATGTATAAAATAGGGCAGT............................................................................... 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................ATAGGGCAGTAATTATTATTGCTTAGT.............................................................. 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CGGTTAATCCTAGATGGAGA.................................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATCTATAAAATAGGGCAGTAA............................................................................. 21 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CCCGGTTAATCCTAGATGGAGAAA.................................................................................................................. 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CCTAGATGGAGAAACAATCGT........................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................TTCCGGTTAATCCTAGATGGAGAA................................................................................................................... 24 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................AAAATGTATAAAATAGGGCA................................................................................. 20 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TCGTAAAAATCAAATGTATA........................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATGTATAAAATAGGGCAGTA.............................................................................. 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...GCAACGTCATCACCTCAGGCA................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AATTTTATTCTTTGCAGTATT......................................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GCTATTCCGGTTAATCCTAGA.......................................................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAGATGGAGAAACAATCGTAAAA....................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTATTGCTTAGTTAACTCCTAA.................................................... 22 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TAATCCTAGATGGAGAAACA................................................................................................................ 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTAAAAATCAAATGTATAAAATAGGGC.................................................................................. 27 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AAATGTATAAAATAGGGCAGTAA............................................................................. 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAAATAAGTAAATAACGACCTAAAA..................... 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TACTCCGGTTAATCCTAGAT......................................................................................................................... 20 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................TTATTATTGCTTAGTTAACTCCTAAATC................................................. 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TAAGTAAATAACGACCTATATTCTGT................ 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AATGGACGTGGTCCACAACG.......................................................................................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GCAGCCCCAATGGACGTGGTCC................................................................................................................................................................................................................ 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................AGTTAACTCCTAAATCAAA.............................................. 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGTTAACTCCTAAATCAAATAA........................................... 23 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......ACGTCATCACCTCAGGCAGCCCCA............................................................................................................................................................................................................................. 24 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TATTATTGCTTAGTTAACTCCT...................................................... 22 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AGATGGAGAAACAATCGTAAA........................................................................................................ 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGTATAAAATAGGGCAGTA.............................................................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GTCATCACCTCAGGCAGCCC............................................................................................................................................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTATTGCTTAGTTAACTCCTAAATC................................................. 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GCTATTCCGGTTAATCCTA............................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CAGTATTCCGGTTGGTCCTGG........................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TCCGGGTAATCCTAGACCG....................................................................................................................... 19 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ATGGTTACGACATCACCTC........................................................................................................................................................................................................................................ 19 3 13 0.15 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................AACCTAGATGCGGAAACAAT.............................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................CCACAACTCGTTAGTGTTAC.............................................................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................ACGCTATTCCGGTTAATCC.............................................................................................................................. 19 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TACCGTTGCAGTAGTGGAGTCCGTCGGGGTTACCTGCACCAGGTGTTGCGCATTCACTATGTATTGTATCTATTGTTTATCTTTTGTAACTTATTAAAATAAGAAACGTCATAAGGCCAATTAGGATCTACCTCTTTGTTAGCATTTTTAGTTTACATATTTTATCCCGTCATTAATAATAACGAATCAATTGAGGATTTAGTTTATTTATTCATTTATTGCTGGATATAAGACAAAAATATTAACTTAAT
*******************************************************************************((((....................................)))).....*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR1106729
mixed whole adult body
 SRR060654
160x9_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
........................................................................................................................................................................................................................TATTGCTGGATATAAGACAAA.............. 21 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CCGTCGTTAATAATAACGAAT................................................................ 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGAGGATTTAGTTTATTTATT....................................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................GTTAGCATTTTTAGTTTACAT............................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................AAAATAAGAAACGTCATAAGGCCAAT.................................................................................................................................. 26 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................TCTTTTGTAACTTATTAAA......................................................................................................................................................... 19 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
....................CCGTCGGGGTTACCTGCACCA.................................................................................................................................................................................................................. 21 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
..................................TGCACCAGGTGTTGCGCATT..................................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................AACGTCATAAGGCCAATTAGGATCTACCT...................................................................................................................... 29 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................ACGTGAAGAGGCCAATTAGG.............................................................................................................................. 20 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
.ACCGTTGCAGGAGGGGAG........................................................................................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................ACTTGAGGTTTTAGTTTAT............................................ 19 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................TTGGTAGCATTTTTATTTCAC............................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................TCAATGGAGGATTTA.................................................. 15 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
.......................TCGGGCTTATCTGCACCTG................................................................................................................................................................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................GCGCCAATCAGGATCTAC........................................................................................................................ 18 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................CGTGAAAAGGCCAATTCGG.............................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:1809378-1809628 + dvi_4923 ATGGCAACGTCATCACCTCAGGCAGCCCCAATGGACGTGGTCCACAACGCGTAAGTGATACATAA--CA----------TAGATAACAAA----TAGAAAACATTGAA-----------------------------------TAAT-----TTT-ATTCTTTGCAGTATT----------------------CCGGTTAATCCTAGATGGAG-AAACAATCGTAAAAATCAAATGT----ATAAAATAGGGCAGTAATTATTATTGCTTAGTTAAC-TCCTAAATCAAATAAATAAGTAAATAACGACCTATATTCTGTTTTTATAATTGAATTA
droMoj3 scaffold_6496:13683559-13683750 - dmo_1129 ATGGCAATGTCATCACCTCCGGTAGTCCCAATGGACGTGGCCCACAGCGCGTAAGTGACAAA-GT--TA---TTATGCTATA--T---------TTA--------------TATTTG-CTTCAAATATT-----TATATTATTATT-------CT-TTCTTTTTTAGTATT----------------------CCGGCTAAGACAGGAAGGAAGGACTGAAGAG---------------------------GCAGTAGT-------ACGA-AATAAA-TCTTAAATCGAATAAAT-----------------------------------------
droGri2 scaffold_15112:3908923-3909051 + ATGGCAGCGTCATCACCTCTGGCAGTCCCAATGGACGCGGTCCACAACGCGTAAGTGACAAA--C--TCAAAT------CGG--AAAAAAGCAAACA--------------AACTTT-AATC-----------------TCCAATCT-----CCTAATTTTCCACAGTATT----------------------CCGGCTA----------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004382:902824-902941 - ACGGCAATGCTATTACCTCAGGCCG------GGGACGGGCACCCCAACATGTAAGTAATATGCCAGTTC---T------TAA--AAAAAAATAAATA--------------AACT-------------------------CA----TTGCAACAA-CTTTTTTACAGTACT----------------------CCGGCTG---------------------------------------------------------------------------------------------------------------------------------------A
dp5 3:13572850-13572903 - ACGGAAATTCCATTGTCGGCCGACC------AGGCCGACCCTCACAGCGTGTAAGTAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_2:8047140-8047193 + ACGGAAATTCCATTGTCGGCCGACC------AGGCCGACCCTCACAGCGTGTAAGTAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:16602946-16603099 + ATGGAAATGCTATCGTCTCTGGGCG------AC---GTGGTACTCAGCATGTAAGTACCCATAAC--CC----------GAA--AAGAAA----TCGAATTCCCTTTTTAATGCTC------------------------TTTTT-------TTT-CTTCTTTATAGTACT----------------------CCGGTTG------ATAGAAT----CGGTTGAAAAAACAAGGTGTCTAGACT-------------------------------------------------------------------------------------------A
droBip1 scf7180000396384:713513-713710 + ATGGAAATGCAATCGTCTCTGGACG------AC---GTGGCACGCAGCGTGTAAGTATTCCTAAT--CT----------TAA--AAGAAA----TCGCATTCCGTTTG--------------------------------TAATTATCTTTTTTT-CTACTTTATAGTACT----------------------CCTA---------AGCGAGG-CGCTGGAAAAA----CAACTTGTCTATATAATATATGGCTTGTGTAAATACTACGTTCATAGCTACTTAAATCACATAAA------------------------------------------
droKik1 scf7180000302277:537803-537906 - ATGGAAACGCCATTGTCTCTGGTCG------AC---GCGGTACCCAGCGTGTGAGTAAACTTTG-----------------------------------------------AGCTTC-AGCT----AGCAACAATAAACTAATAAA-------TT-CCTTTTTGCAGTTCT----------------------CC---------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454039:107831-107870 + ATGGAAATGCCATTGTTTCTGGTCG------TGGACGT---ACTCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000486108:1144-1269 - ATGGAAGCACCATTATTTCTGGTCA------TGGAAA---AACACAGCACGTGAGTAGCACAAAT--CC----------ACA--A---------TCT--------------TATTTC-AGCC-----------------TAAAATA-------TT-ATTTTTTGCAGTACC----------------------TCTAGAAAAACAGGAAGGAGTAAA-------------------------CA-------------------------------------------------------------------------------------------A
droRho1 scf7180000780108:185558-185775 + ATGGAAGCGCCATTGTTTCCGGTCA------TGGACA---GACTCAACACGTGAGTAGGATAAAT--CC----------ACA--A---------TCG--------------TATTTC-GACC-----------------AAAAATA-------TTAATTTTTTTCAGTACTAAAGAAATGATGGCTAATTACCTCTAGAAGAACAGAATGGTGTAAA-------------------------AA------ACTAGTAACGATT-----TTAATGCTC-TTTTCAATAAAATAAG-----AATTAAAGGCGTATT-----TTTTTGGTATTAAATTA
droBia1 scf7180000302291:876626-876730 - ACGGAAATGCCATTGTGTCCGGACG------GGGACGCCCTGCACAGCGTGTAAGTAATCGG-AT--TA---C-------CAAGC---------CAG--------------AGCTCT-CAAC-----------------TAATGTA-------TT-GATATTTGCAGTACT----------------------CC---------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415379:468345-468459 + ACGGAAATGCCATTGTCTCCGGACG---CAGGGGACGTCCTGCCCAGCGTGTAAGTAGTCCCGAT--TA---T-------CACGA---------CCG--------------TATCCT-CATC-----------------TAATGAA-------TT-GATTTTTGCAGTACT----------------------CCAAATA---------------------------------------------------------------------------------------------------------------------------------------A
droEug1 scf7180000409183:475558-475658 + ATGGCAGTGTCATTATATCTGGTCA------TGGACA---AACTCAGCATGTGAGTAGAATTTAA--CT----------AAA--T---------TAA--------------AATTTG-TATC-----------------TGAAATAT-----CTT-TTTATTTACAGTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:4821758-4821869 + ACGGAAGTGTTATTGTTTCTGGACA------TGGGCA---CACGCTGCAAGTGAGTACATTGTTT--AA----------TTT--A---------TCA--------------AGTTTCGCTTA--------TGAATATACTTA----TATATATTT-TTTATTTGCAGTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:9963544-9963568 + ATGGTCGTACCATCGTGTCCGGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1:6818598-6818622 + ATGGTCGTACCATCGTGTCCGGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:7660406-7660458 - GTGGTCGTACCATCGTGTCTGGAAG------AGGACGTCCTGCCCAGCAAGTAAGCCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:16517471-16517523 - ATGGTCATACCATCGTGTCCGGAAG------GGGACGTCCTGACCAGCACGTAAGCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATGGCAACGTCATCACCTCAGGCAGCCCCAATGGACGTGGTCCACAACGCGTAAGTGATACATAA--CA----------TAGATAACAAA----TAGAAAACATTGAA-----------------------------------TAAT-----TTT-ATTCTTTGCAGTATT----------------------CCGGTTAATCCTAGATGGAG-AAACAATCGTAAAAATCAAATGT----ATAAAATAGGGCAGTAATTATTATTGCTTAGTTAAC-TCCTAAATCAAATAAATAAGTAAATAACGACCTATATTCTGTTTTTATAATTGAATTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................TGT----ATAAAATAGGGCAGT................................................................................1822.004210000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CCTAGATGGAG-AAACAATCGTA...............................................................................................................2221.002002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GGTTAATCCTAGATGGAG-AAA.......................................................................................................................2121.002000000000000000100100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GTAATTATTATTGCTTAGTT..............................................................2021.002000000000000000002000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TAATCCTAGATGGAG-AAA.......................................................................................................................1821.002000000000000000001100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AAC-TCCTAAATCAAATAAATAAGT.....................................2420.501000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................ATAAAATAGGGCAGTAATTAT..........................................................................2120.501000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TATTGCTTAGTTAAC-TCCTAAATCAAAT.............................................2820.501000000000000000001000000000000000000000000000000000000000000000
ATGGCAACGTCATCACCTC.............................................................................................................................................................................................................................................................................................................................1920.501001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CATTGAA-----------------------------------TAAT-----TTT-ATTCTTTGCAGT........................................................................................................................................................................2620.501000000000000000010000000000000000000000000000000000000000000000
..........CATCACCTCAGGCAGCCCCA..................................................................................................................................................................................................................................................................................................................2020.501000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GCTTAGTTAAC-TCCTAAATC.................................................2020.501000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CCGGTTAATCCTAGATGGAG-AAA.......................................................................................................................2320.501000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GGTTAATCCTAGATGGAG-AAACA.....................................................................................................................2320.501000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AAATAAGTAAATAACGACC..........................1920.501000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AAATAACGACCTATATTCTGTT...............2220.501000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................ATGT----ATAAAATAGGGCAGT................................................................................1920.501000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................................................................................................................TGT----ATAAAATAGGGCAGTAATC............................................................................2220.501000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................GTTAATCCTAGATGGAG-AAA.......................................................................................................................2020.501000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CTAGATGGAG-AAACAATCGTAAAA............................................................................................................2420.501000000000000001000000000000000000000000000000000000000000000000
...GCAACGTCATCACCTCAGGC.........................................................................................................................................................................................................................................................................................................................2020.501000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................ATT----------------------CCGGTTAATCCTAGATGGAG-AA........................................................................................................................2520.501000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TAGATGGAG-AAACAATCGT................................................................................................................1920.501000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................GT----ATAAAATAGGGCAGTAATT............................................................................2120.501000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CGGTTAATCCTAGATGGAG-AAACAAT...................................................................................................................2620.501000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................AATGT----ATAAAATAGGGCAGT................................................................................2020.501000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ATAGGGCAGTAATTATTATTGCTTAGT...............................................................2720.501000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CGGTTAATCCTAGATGGAG-A.........................................................................................................................2020.501000000000000000010000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CCTAGATGGAG-AAACAATCGT................................................................................................................2120.501000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................................................TT----------------------CCGGTTAATCCTAGATGGAG-AA........................................................................................................................2420.501000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................TCGTAAAAATCAAATGT----ATA............................................................................................2020.501000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................ATGT----ATAAAATAGGGCAGTA...............................................................................2020.501000000000000000000000000000000000000000000000000000000000000010
...GCAACGTCATCACCTCAGGCA........................................................................................................................................................................................................................................................................................................................2120.501000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................AAT-----TTT-ATTCTTTGCAGTATT----------------------...............................................................................................................................................2120.501000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TAGATGGAG-AAACAATCGTAAAA............................................................................................................2320.501000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TTATTGCTTAGTTAAC-TCCTAA....................................................2220.501000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TAATCCTAGATGGAG-AAACA.....................................................................................................................2020.501000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GTAAAAATCAAATGT----ATAAAATAGGGC...................................................................................2720.501100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AAATGT----ATAAAATAGGGCAGTAA..............................................................................2320.501001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TTATTATTGCTTAGTTAAC-TCCTAAATC.................................................2820.501001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TAAGTAAATAACGACCTATATTCTGT................2620.501001000000000000000000000000000000000000000000000000000000000000
.............................AATGGACGTGGTCCACAACG...............................................................................................................................................................................................................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
.....................GCAGCCCCAATGGACGTGGTCC.....................................................................................................................................................................................................................................................................................................2220.501001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AGTTAAC-TCCTAAATCAAA..............................................1920.501001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TAGTTAAC-TCCTAAATCAAATAA...........................................2320.501000000000000000000100000000000000000000000000000000000000000000
......ACGTCATCACCTCAGGCAGCCCCA..................................................................................................................................................................................................................................................................................................................2420.501000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................TATTATTGCTTAGTTAAC-TCCT......................................................2220.501000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................AGATGGAG-AAACAATCGTAAA.............................................................................................................2120.501000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TGT----ATAAAATAGGGCAGTA...............................................................................1920.501000000000000000001000000000000000000000000000000000000000000000
........GTCATCACCTCAGGCAGCCC....................................................................................................................................................................................................................................................................................................................2020.501100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TTATTGCTTAGTTAAC-TCCTAAATC.................................................2520.501000000000000001000000000000000000000000000000000000000000000000
droMoj3
ATGGCAATGTCATCACCTCCGGTAGTCCCAATGGACGTGGCCCACAGCGCGTAAGTGACAAA-GT--TA---TTATGCTATA--T---------TTA--------------TATTTG-CTTCAAATATT-----TATATTATTATT-------CT-TTCTTTTTTAGTATT----------------------CCGGCTAAGACAGGAAGGAAGGACTGAAGAG---------------------------GCAGTAGT-------ACGA-AATAAA-TCTTAAATCGAATAAAT-----------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............CACCTCCGGTAGTCCCAATGGA.............................................................................................................................................................................................................................................................................................................2211.001000100
................................GGACGTGGCCCACAGCGC..............................................................................................................................................................................................................................................................................................1811.001000010
..........................................................................................................................................................................................................ACAGGAAGGAAGGACTGA....................................................................................................................1811.001100000
............................................................................................................................................................................................................................AGAG---------------------------GCAGTAGT-------ACGA-AA...............................................................1811.001100000
....................................................................................................................................................................................................GCTAAGACAGGAAGGAAGG.........................................................................................................................1911.001000001
..........................................................................................................................................................................................................ACAGGAAGGAAGGACTGAAG..................................................................................................................2011.001000100
.............CACCTCCGGTAGTCCCAATGGACGT..........................................................................................................................................................................................................................................................................................................2511.001001000
........................................................................................................................................................................ATT----------------------CCGGCTAAGACAGGAAGGAAGGACT......................................................................................................................2811.001000100
.........................................................................................................................................................................................................GACAGGAAGGAAGGACTGAAG..................................................................................................................2111.001000001
.....................GTAGTCCCAATGGACGTGGCCCACAGCGC..............................................................................................................................................................................................................................................................................................2911.001000001
.................................GACGTGGCCCACAGCGC..............................................................................................................................................................................................................................................................................................1711.001000100
..................................................................................................................................................................................................................GAAGGACTGAAGAG---------------------------GCAGTAGT-------AC....................................................................2411.001000001
...............CCTCCGGTAGTCCCAATG...............................................................................................................................................................................................................................................................................................................1811.001001000
droGri2
ATGGCAGCGTCATCACCTCTGGCAGTCCCAATGGACGCGGTCCACAACGCGTAAGTGACAAA--C--TCAAAT------CGG--AAAAAAGCAAACA--------------AACTTT-AATC-----------------TCCAATCT-----CCTAATTTTCCACAGTATT----------------------CCGGCTA----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...GCAGCGTCATCACCTCTGGCA........................................................................................................................................................................................................................................................................................................................21213.00261511
...GCAGCGTCATCACCTCTGGCAGTC.....................................................................................................................................................................................................................................................................................................................24211.5023914
...GCAGCGTCATCACCTCTG...........................................................................................................................................................................................................................................................................................................................18210.5021201
...GCAGCGTCATCACCTCTGGCAGTCC....................................................................................................................................................................................................................................................................................................................2529.5019712
...GCAGCGTCATCACCTCTGGC.........................................................................................................................................................................................................................................................................................................................2029.5019712
.....................GCAGTCCCAATGGACGCGGTCC.....................................................................................................................................................................................................................................................................................................2217.00770
......GCGTCATCACCTCTGGCAGTC.....................................................................................................................................................................................................................................................................................................................2126.0012111
...GCAGCGTCATCACCTCTGGCAGT......................................................................................................................................................................................................................................................................................................................2326.001284
......GCGTCATCACCTCTGGCAGTCCC...................................................................................................................................................................................................................................................................................................................2324.50990
......GCGTCATCACCTCTGGCA........................................................................................................................................................................................................................................................................................................................1824.50990
....CAGCGTCATCACCTCTGGCA........................................................................................................................................................................................................................................................................................................................2023.50716
.....AGCGTCATCACCTCTGGCAGTCC....................................................................................................................................................................................................................................................................................................................2323.50761
.....AGCGTCATCACCTCTGGCA........................................................................................................................................................................................................................................................................................................................1923.00651
......GCGTCATCACCTCTGGCAGT......................................................................................................................................................................................................................................................................................................................2023.00642
..............ACCTCTGGCAGTCCCAATG...............................................................................................................................................................................................................................................................................................................1913.00330
...GCAGCGTCATCACCTCTGGCAG.......................................................................................................................................................................................................................................................................................................................2222.50541
.....AGCGTCATCACCTCTGGCAGTC.....................................................................................................................................................................................................................................................................................................................2222.50550
......GCGTCATCACCTCTGGCAGTCC....................................................................................................................................................................................................................................................................................................................2222.00440
...GCAGCGTCATCACCTCTGGCAGTCCC...................................................................................................................................................................................................................................................................................................................2622.00413
...GCAGCGTCATCACCTCTGGCAGTCCCA..................................................................................................................................................................................................................................................................................................................2722.00413
....CAGCGTCATCACCTCTGGCAGTC.....................................................................................................................................................................................................................................................................................................................2321.50312
ATGGCAGCGTCATCACCTCTGGC.........................................................................................................................................................................................................................................................................................................................2321.50303
.TGGCAGCGTCATCACCTCTG...........................................................................................................................................................................................................................................................................................................................2021.50330
........GTCATCACCTCTGGCAGTC.....................................................................................................................................................................................................................................................................................................................1921.50330
..GGCAGCGTCATCACCTCTGGC.........................................................................................................................................................................................................................................................................................................................2121.50312
.................TCTGGCAGTCCCAATGGACGCGGTCCA....................................................................................................................................................................................................................................................................................................2711.00110
............TCACCTCTGGCAGTCCCAATG...............................................................................................................................................................................................................................................................................................................2111.00110
........................GTCCCAATGGACGCGGTCCACAAC................................................................................................................................................................................................................................................................................................2411.00110
...........ATCACCTCTGGCAGTCCCAATG...............................................................................................................................................................................................................................................................................................................2211.00110
.............................AATGGACGCGGTCCACAACG...............................................................................................................................................................................................................................................................................................2011.00110
ATGGCAGCGTCATCACCTCTGGCAGT......................................................................................................................................................................................................................................................................................................................2621.00202
.........TCATCACCTCTGGCAGTCCCAATG...............................................................................................................................................................................................................................................................................................................2411.00110
..GGCAGCGTCATCACCTCTGGCAGTC.....................................................................................................................................................................................................................................................................................................................2521.00211
..................CTGGCAGTCCCAATGGACGCGGTCC.....................................................................................................................................................................................................................................................................................................2511.00110
....................GGCAGTCCCAATGGACGCGGTC......................................................................................................................................................................................................................................................................................................2211.00110
...........ATCACCTCTGGCAGTCCCAATGGA.............................................................................................................................................................................................................................................................................................................2411.00110
....................GGCAGTCCCAATGGACGCGGTCCA....................................................................................................................................................................................................................................................................................................2411.00110
..............ACCTCTGGCAGTCCCAATGGACGC..........................................................................................................................................................................................................................................................................................................2411.00110
...........................CCAATGGACGCGGTCCACAACG...............................................................................................................................................................................................................................................................................................2211.00110
...........ATCACCTCTGGCAGTCCC...................................................................................................................................................................................................................................................................................................................1821.00220
............TCACCTCTGGCAGTCCCAAT................................................................................................................................................................................................................................................................................................................2011.00110
............................CAATGGACGCGGTCCACAACG...............................................................................................................................................................................................................................................................................................2111.00110
........................GTCCCAATGGACGCGGTCCACAACGCT.............................................................................................................................................................................................................................................................................................2711.00110
.............................AATGGACGCGGTCCACAACGCTA............................................................................................................................................................................................................................................................................................2311.00110
...GCAGCGTCATCACCTCTGG..........................................................................................................................................................................................................................................................................................................................1921.00211
..............ACCTCTGGCAGTCCCAATGGA.............................................................................................................................................................................................................................................................................................................2111.00110
.............CACCTCTGGCAGTCCCAATG...............................................................................................................................................................................................................................................................................................................2011.00110
.........................TCCCAATGGACGCGGTCCA....................................................................................................................................................................................................................................................................................................1911.00110
.................................GACGCGGTCCACAACGCTA............................................................................................................................................................................................................................................................................................1931.00330
.....................GCAGTCCCAATGGACGCGGTCCACAAC................................................................................................................................................................................................................................................................................................2711.00110
..GGCAGCGTCATCACCTCTGGCA........................................................................................................................................................................................................................................................................................................................2221.00220
.....AGCGTCATCACCTCTGGC.........................................................................................................................................................................................................................................................................................................................1831.00330
...........ATCACCTCTGGCAGTCCCA..................................................................................................................................................................................................................................................................................................................1921.00220
.....AGCGTCATCACCTCTGGCAGTCCC...................................................................................................................................................................................................................................................................................................................2421.00211
........GTCATCACCTCTGGCAGTCCC...................................................................................................................................................................................................................................................................................................................2121.00220
.............................AATGGACGCGGTCCACAACGCT.............................................................................................................................................................................................................................................................................................2211.00101
....CAGCGTCATCACCTCTGGC.........................................................................................................................................................................................................................................................................................................................1930.67211
.TGGCAGCGTCATCACCTCTGGCAG.......................................................................................................................................................................................................................................................................................................................2420.50110
........GTCATCACCTCTGGCAGTCC....................................................................................................................................................................................................................................................................................................................2020.50110
.TGGCAGCGTCATCACCTCTGGC.........................................................................................................................................................................................................................................................................................................................2220.50101
..GGCAGCGTCATCACCTCTGGCAGT......................................................................................................................................................................................................................................................................................................................2420.50110
.TGGCAGCGTCATCACCTCTGGCAGT......................................................................................................................................................................................................................................................................................................................2520.50101
.........TCATCACCTCTGGCAGTCC....................................................................................................................................................................................................................................................................................................................1920.50110
ATGGCAGCGTCATCACCTCTGGCA........................................................................................................................................................................................................................................................................................................................2420.50110
.......CGTCATCACCTCTGGCAGTCC....................................................................................................................................................................................................................................................................................................................2120.50110
ATGGCAGCGTCATCACCTCTGGCAGTC.....................................................................................................................................................................................................................................................................................................................2720.50101
ATGGCAGCGTCATCACCTCTG...........................................................................................................................................................................................................................................................................................................................2120.50110
..........CATCACCTCTGGCAGTCCCA..................................................................................................................................................................................................................................................................................................................2020.50110
.........TCATCACCTCTGGCAGTCCC...................................................................................................................................................................................................................................................................................................................2020.50110
.................................GACGCGGTCCACAACGCT.............................................................................................................................................................................................................................................................................................1820.50110
............TCACCTCTGGCAGTCCCAA.................................................................................................................................................................................................................................................................................................................1920.50110
......GCGTCATCACCTCTGGCAG.......................................................................................................................................................................................................................................................................................................................1920.50110
ATGGCAGCGTCATCACCTCT............................................................................................................................................................................................................................................................................................................................2020.50110
....CAGCGTCATCACCTCTGGCAGTCC....................................................................................................................................................................................................................................................................................................................2420.50110
.......CGTCATCACCTCTGGCAGTCCC...................................................................................................................................................................................................................................................................................................................2220.50110
.................................GACGCGGTCCACAACGCTAT...........................................................................................................................................................................................................................................................................................2050.40220
.....AGCGTCATCACCTCTGGCAC.......................................................................................................................................................................................................................................................................................................................2030.33110
....CAGCGTCATCACCTCTGG..........................................................................................................................................................................................................................................................................................................................1830.33110
..................................ACGCGGTCCACAACGCTAT...........................................................................................................................................................................................................................................................................................19160.06110
droWil2
ACGGCAATGCTATTACCTCAGGCCG------GGGACGGGCACCCCAACATGTAAGTAATATGCCAGTTC---T------TAA--AAAAAAATAAATA--------------AACT-------------------------CA----TTGCAACAA-CTTTTTTACAGTACT----------------------CCGGCTG---------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............TACCTCAGGCCG------GGGACGGG.........................................................................................................................................................................................................................................................................................................2011.00100100
....................GGCCG------GGGACGGGCACCCCAACA...............................................................................................................................................................................................................................................................................................2311.00101000
.................................................................................................................CT-------------------------CA----TTGCAACAA-CTTTTTTACAG.........................................................................................................................................................................2411.00101000
......ATGCTATTACCTCAGGCCG------G................................................................................................................................................................................................................................................................................................................2011.00100100
.....................GCCG------GGGACGGGCACCCCAG.................................................................................................................................................................................................................................................................................................2011.00101000
......ATGCTATTACCTCAGGCCG------GG...............................................................................................................................................................................................................................................................................................................2111.00101000
..............ACCTCAGGCCG------GGGACGGGCACC.....................................................................................................................................................................................................................................................................................................2311.00101000
dp5
ACGGAAATTCCATTGTCGGCCGACC------AGGCCGACCCTCACAGCGTGTAAGTAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............TTGTCGGCCGACC------AGGCCGACCCT......................................................................................................................................................................................................................................................................................................2411.0010100000000
...........ATTGTCGGCCGACC------AGGCCGACCCT......................................................................................................................................................................................................................................................................................................2511.0010001000000
....AAATTCCATTGTCGGCCGAC........................................................................................................................................................................................................................................................................................................................2011.0010001000000
droPer2
ACGGAAATTCCATTGTCGGCCGACC------AGGCCGACCCTCACAGCGTGTAAGTAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....AAATTCCATTGTCGGCCGACC------.................................................................................................................................................................................................................................................................................................................2121.002200000
droAna3
ATGGAAATGCTATCGTCTCTGGGCG------AC---GTGGTACTCAGCATGTAAGTACCCATAAC--CC----------GAA--AAGAAA----TCGAATTCCCTTTTTAATGCTC------------------------TTTTT-------TTT-CTTCTTTATAGTACT----------------------CCGGTTG------ATAGAAT----CGGTTGAAAAAACAAGGTGTCTAGACT-------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................TTG------ATAGAAT----CGGTTGAAAAA............................................................................................................2117.007000025
......................................................................................................................................................................................................TG------ATAGAAT----CGGTTGAAAAA............................................................................................................2012.002000002
............................................................................................................................................................................................................................TTGAAAAAACAAGGTGTCTAG...............................................................................................2112.002200000
.............................................................................................................................................................................................................................TGAAAAAACAAGGTGTCTAGA..............................................................................................2112.002200000
...................................................................................................................................................................................................GGTTG------ATAGAAT----CGGTTGAAAA.............................................................................................................2211.001000001
..............GTCTCTGGGCG------AC---GTGGTACT....................................................................................................................................................................................................................................................................................................2111.001000010
...........ATCGTCTCTGGGCG------AC---GTGG........................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................TG------ATAGAAT----CGGTTGAAAAAA...........................................................................................................2111.001000001
..................................................................................................................................................................TATAGTACT----------------------CCGGTTG------ATAGA.............................................................................................................................2111.001000100
.....................................................................................................................................................................................................TTG------ATAGAAT----CGGTTGAAAAAA...........................................................................................................2211.001000010
................................................................................................................................................................................................................................AAAAACAAGGTGTCTAGACT-------------------------------------------------------------------------------------------A2111.001100000
..................................................................................................................................................................................................................................AAACAAGGTGTCTAGACT-------------------------------------------------------------------------------------------A1911.001100000
...........................................................................................................................................................................................................................GTTGAAAAAACAAGGTGTCT.................................................................................................2011.001000001
............................................................................................................................................................................................................................TTGAAAAAACAAGGTGTCTA................................................................................................2011.001000001
...............................................................................................................................................................................................................TAGAAT----CGGTTGAAAAAAC..........................................................................................................1911.001000001
......................................................................................................................................................................................................TG------ATAGAAT----CGGTTGAAAA.............................................................................................................1911.001100000
droBip1
ATGGAAATGCAATCGTCTCTGGACG------AC---GTGGCACGCAGCGTGTAAGTATTCCTAAT--CT----------TAA--AAGAAA----TCGCATTCCGTTTG--------------------------------TAATTATCTTTTTTT-CTACTTTATAGTACT----------------------CCTA---------AGCGAGG-CGCTGGAAAAA----CAACTTGTCTATATAATATATGGCTTGTGTAAATACTACGTTCATAGCTACTTAAATCACATAAA------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATGGAAACGCCATTGTCTCTGGTCG------AC---GCGGTACCCAGCGTGTGAGTAAACTTTG-----------------------------------------------AGCTTC-AGCT----AGCAACAATAAACTAATAAA-------TT-CCTTTTTGCAGTTCT----------------------CC---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATGGAAATGCCATTGTTTCTGGTCG------TGGACGT---ACTCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ATGGAAGCACCATTATTTCTGGTCA------TGGAAA---AACACAGCACGTGAGTAGCACAAAT--CC----------ACA--A---------TCT--------------TATTTC-AGCC-----------------TAAAATA-------TT-ATTTTTTGCAGTACC----------------------TCTAGAAAAACAGGAAGGAGTAAA-------------------------CA-------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
ATGGAAGCGCCATTGTTTCCGGTCA------TGGACA---GACTCAACACGTGAGTAGGATAAAT--CC----------ACA--A---------TCG--------------TATTTC-GACC-----------------AAAAATA-------TTAATTTTTTTCAGTACTAAAGAAATGATGGCTAATTACCTCTAGAAGAACAGAATGGTGTAAA-------------------------AA------ACTAGTAACGATT-----TTAATGCTC-TTTTCAATAAAATAAG-----AATTAAAGGCGTATT-----TTTTTGGTATTAAATTASizeHit CountTotal NormTotal
No Reads
droBia1
ACGGAAATGCCATTGTGTCCGGACG------GGGACGCCCTGCACAGCGTGTAAGTAATCGG-AT--TA---C-------CAAGC---------CAG--------------AGCTCT-CAAC-----------------TAATGTA-------TT-GATATTTGCAGTACT----------------------CC---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACGGAAATGCCATTGTCTCCGGACG---CAGGGGACGTCCTGCCCAGCGTGTAAGTAGTCCCGAT--TA---T-------CACGA---------CCG--------------TATCCT-CATC-----------------TAATGAA-------TT-GATTTTTGCAGTACT----------------------CCAAATA---------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
ATGGCAGTGTCATTATATCTGGTCA------TGGACA---AACTCAGCATGTGAGTAGAATTTAA--CT----------AAA--T---------TAA--------------AATTTG-TATC-----------------TGAAATAT-----CTT-TTTATTTACAGTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ACGGAAGTGTTATTGTTTCTGGACA------TGGGCA---CACGCTGCAAGTGAGTACATTGTTT--AA----------TTT--A---------TCA--------------AGTTTCGCTTA--------TGAATATACTTA----TATATATTT-TTTATTTGCAGTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................TTCTGGACA------TGGGCA---CACGCTGCAATAC...........................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTTCTGGACA------TGGGCA---CACGC...................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTATTGTTTCTGGACA------TGGGCA---CA......................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATGGTCGTACCATCGTGTCCGGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......TACCATCGTGTCCGGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1812.00220000000000000000
..GGTCGTACCATCGTGTCCG...........................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
droSec2
ATGGTCGTACCATCGTGTCCGGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GTGGTCGTACCATCGTGTCTGGAAG------AGGACGTCCTGCCCAGCAAGTAAGCCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......GTACCATCGTGTCTGGAAG------AGGACGTCCT.......................................................................................................................................................................................................................................................................................................2911.00110000000000
..............GTGTCTGGAAG------AGGACGTC.........................................................................................................................................................................................................................................................................................................1911.00110000000000
.....................GAAG------AGGACGTCCTGCCCAGC................................................................................................................................................................................................................................................................................................2111.00101000000000
droEre2
ATGGTCATACCATCGTGTCCGGAAG------GGGACGTCCTGACCAGCACGTAAGCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...GTCATACCATCGTGTCCGGAAG------GGG..............................................................................................................................................................................................................................................................................................................2511.0010000100
...GTCATACCATCGTGTCCGGAAG------GGGA.............................................................................................................................................................................................................................................................................................................2611.0010000100
..........CATCGTGTCCGGAAG------GGGACGTCC........................................................................................................................................................................................................................................................................................................2411.0011000000
..............GTGTCCGGAAG------GGGACGTCCTGACCAGCA...............................................................................................................................................................................................................................................................................................2911.0010000100
...............TGTCCGGAAG------GGGACGTCCT.......................................................................................................................................................................................................................................................................................................2011.0010000100
.......TACCATCGTGTCCGGAAG------GGGAC............................................................................................................................................................................................................................................................................................................2311.0011000000
.....CATACCATCGTGTCCGGAAG------GGG..............................................................................................................................................................................................................................................................................................................2311.0010000100
...........ATCGTGTCCGGAAG------GGGACGTCC........................................................................................................................................................................................................................................................................................................2311.0011000000
......ATACCATCGTGTCCGGAAG------GGGACG...........................................................................................................................................................................................................................................................................................................2511.0010000100

Generated: 05/17/2015 at 04:22 AM