ID:

dvi_4868

 Coordinate:

scaffold_12875:1399134-1399284 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.9 -8.8 -8.8

Flybase annnotation

exon [dvir_GLEANR_6468:4]; CDS [Dvir\GJ21078-cds]; intron [Dvir\GJ21078-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACATTTACAGAATTCTTACGAGTATGTGCCTGATGAGAGTATTCCCGAGCCGGATTATAAGAAAATATTAGACGAACATGAAGTCAAAGATCTGCAGCGACAGATGTCTGCATTATTGGCCGAAAATCTGGAATTTAAGGACATGGTTTGTACCGCATAAAAAACCAGTCGTAATAAACTAATAAATTCTTTAATTTTTAGAAAAAAACCTATATTGAGGAAATAGATTGCTTGAAGGTGAACTTAACCAG
**********************************************************************............(((((.((..(((((((.....)).))))))).)))))..................***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060679
140x9_testes_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 M027
male body		 SRR060660
Argentina_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 SRR060655
9x160_testes_total
 SRR060658
140_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060689
160x9_testes_total
 V053
head
 SRR060686
Argx9_0-2h_embryos_total
............................................................................................................................................................................................................................AAATAGATTGCTTGAAGGT............ 19 0 1 5.00 5 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................GTATGTGCCTGATGAGAGT................................................................................................................................................................................................................... 19 0 1 4.00 4 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............CTTACGAGTATGTGCCTGATGAGAGT................................................................................................................................................................................................................... 26 0 1 3.00 3 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................ATTCCCGAGCCGGATTATAAG.............................................................................................................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TGTGCCTGATGAGAGTATTCC.............................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTGAGGAAATAGATTGCTT.................. 20 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................GACGAACATGAAGTCAAAGATCTGCAG.......................................................................................................................................................... 27 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GAAATAGATTGCTTGAAGGT............ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................CGAGTATGTGCCTGATGAGAGT................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TTGGCCGAAAATCTGGAATTTAA................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................CAAAGATCTGCAGCGACAGATGTCTGC............................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TTCCCGAGCCGGATTATAAGAAAATA........................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AATAGATTGCTTGAAGGT............ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TTCCCGAGCCGGATTATAAGA............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGATTGCTTGAAGGTGAACTTA..... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATAGATTGCTTGAAGGTGAA......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGAGTAGGTGCCTGATGAGA..................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATATTGAGGAAATAGATTGCTTGAAGGT............ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TATGTGCCTGATGAGAGT................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................ATAAGAAAATATTAGACGAA............................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................AGACAATATTAGACGAACATGA.......................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TACGAGTATGTGCCTGATGAGAGTAT................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................GAGAGTATTCCCGAGCCGGA..................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CAACTGAATTCTTACGAGTATGTGC.............................................................................................................................................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGATTGCTTGAAGGTGAACTTAACC.. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AACCTATATTGAGGAAATAGATTGCT................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GATTGCTTGAAGGTGAACT....... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TACGAGTATGTGCCTGATGAGAGT................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TTGGCCGAAAGTCTAGAATTT................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................TGAGAGTATTCCCGAGCCG....................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CTGCATTATTGGCCGAAAATCTGGAAT..................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AAATATTAGACGAACATGAAGT....................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAATAGATTGCTTGAAGGTGAACTT...... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACCTATATTGAGGAAATAGATTGCTT.................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGAAATAGATTGCTTGAAG.............. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CGAACATGAAGTCAAAGATCT.............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GATGAGAGTATTCCCGAGC......................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CGAACATGAAGTCAAAGAT................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CATGAAGTCAAAGATCTGC............................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CAAAGATCTGCAGCGACAGA................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................AGCGACAGATGTCTGCATTATTGGCC.................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CCTATATTGAGGAAATAGA........................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GACAGATGTCTGCATTATTGGC................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TTACGAGTATGTGCCTGATGAGAGT................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGATGAGAGTGTTCCCGAGCCG....................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ACATGAAGTCAAAGATCTG............................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................GAACATGAAGTCAAAGATCT.............................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................AGCGACAGATGTCTGCATTATT...................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AGATCTGCAGCGACAGATGTCT.............................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................GAGAGTATTCCCGAGCCGGATT................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CGAAAATCTGGAATTTAAGGA.............................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................ATTAGACGAACATGAAGTC...................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GAAAATATTAGACGAACAT............................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CGAACATGAAGTCAAAGATCTGC............................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATATTGAGGAAATAGATTGCTTG................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................GTGTGCCTGATGAGAGTGTTC............................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GAGTATTCCCGAGCCGGATT................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GAACATGAAGTCAAGGAGCT.............................................................................................................................................................. 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................CATGAAAAAAACCTATATTGAGG............................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AACTCGATTGCTTGAAGGTGG.......... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................GAACCTGACGTCAAAGAT................................................................................................................................................................ 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TTCTTGGTCGAAAATCCGGA....................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CTTGGTCGAAAATCCGGAAT..................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGAAGAAATAGATTGCTT.................. 18 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAATAGAGTGCATGACGGT............ 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................AACATGAAGTCAAGGAACT.............................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................AGTTTAAGATCTGCTGCGA....................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGTAAATGTCTTAAGAATGCTCATACACGGACTACTCTCATAAGGGCTCGGCCTAATATTCTTTTATAATCTGCTTGTACTTCAGTTTCTAGACGTCGCTGTCTACAGACGTAATAACCGGCTTTTAGACCTTAAATTCCTGTACCAAACATGGCGTATTTTTTGGTCAGCATTATTTGATTATTTAAGAAATTAAAAATCTTTTTTTGGATATAACTCCTTTATCTAACGAACTTCCACTTGAATTGGTC
*****************************************************************************************************************............(((((.((..(((((((.....)).))))))).)))))..................********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060682
9x140_0-2h_embryos_total
 M047
female body
 M028
head
 SRR060675
140x9_ovaries_total
 V047
embryo
 SRR060666
160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V053
head
 V116
male body		 M061
embryo
 SRR060686
Argx9_0-2h_embryos_total
 M027
male body		 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
..................................................................................................................................................................................................AAAAACCTTTGTTTGGATAT..................................... 20 2 3 1.67 5 2 0 0 0 0 0 2 1 0 0 0 0 0 0 0
.........................................................ATTCTTTTATAATCTGCTTGT............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGCCTGTACCTCAGATTCTA................................................................................................................................................................ 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAAAAATCTTTGTTTGGATAT..................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATAACCGGCTTTTAGACCTTA..................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CGCTGTCTACAGACGTAATAA...................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CATGGCTTCTTTTGTGGTCA.................................................................................. 20 3 3 0.67 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0
.........................................................................CTTGTACTTCAGTTTCTGGGG............................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TGCAAACAACTCCTTTATCTAA...................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................AAAAAACTTTGTTTGGATAT..................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAAACCTTTGTTTGGATAT..................................... 19 2 6 0.50 3 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0
.................................................................................................................................................................................TGGCTATTTAAGAAATTAAAAAA................................................... 23 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................CAGAAGGGCTCGGCCTAGTT................................................................................................................................................................................................. 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CTGGTTCCTCAGTTTCTAGAC............................................................................................................................................................. 21 3 16 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0
...................................................................................................................................................................................................AAAAACTTTGTTTGGATAT..................................... 19 2 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGTTTAAGAAATTAAAAA.................................................... 18 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................AAAAAAACTTTGTTTGGATAT..................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................TCAGCATTAGTGGATTCT................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................AAACCTTTGTTTGGATAT..................................... 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:1399084-1399334 - dvi_4868 AC---------ATTTACAGAATTCTTACGAGTATGTGCCTGATGAGAGTAT---TCCCGAGCCGG---ATTATAAGAAAATATT---------------AGA------CGAACAT---------GAAGTCAAAGATCTGCAGCGACAGATGTCTGCATTATTGGCCGAAAATCTGGAATTTAAGGACATGGTTTGTACCGCA---TAAAAA-ACCAG-T---------------CGTAATA-------------------------AACT-------------AATA---A------------ATTCTTTAATTTTTAGAAAAAAACCTATATTGAGGAAATAGATTGCTTGAAGGTGAACTTAACCAG
droMoj3 scaffold_6496:4491588-4491847 - AA---------ATTTGCAGCATTCTTACGAATTTGTCCCTGATGATGGAAGTGT---GG------------------CGCCTGTAAAATGTCTGAAGAGCGGTGATCAGGACAAC---------AAAGTTAAGGATCTACAGCGACAAATGTCTGCACTGTTGGCAGAGAACTTAGAATTTAAGGACATGGTGAGTACTCTT---TATAAA-AACAAA-------T-CAT-TTTCGTAT----------------------TC--------------------AATG---A------------CTTACATACCTTACAGAAAAAGACGTATATCGAGGAAATAGATTGCCTCAAGGTTAACTTGACCAG
droGri2 scaffold_15245:9594802-9595059 + AA---------ATTGACAGCATTCTTACGACTTTGTGCCTGATGTTGA---CAATGCGGAACCTG---AAATCG---------------ATATAAAGCGCGAAAAACATGAAAGT---------CAAGTCAAGGATCTTCAGAGACAGGTCTCTGAATTACTGGCCGAAAATCTAGAAATCAAAGACATGGTTTGTACAATG---TAT-ACA-AA-A-------CTCACC-AAATT----------------------------------------------------------ATATAATCAATCTGCTAAATTACAGAAGAAAACCTATGTCGACGAAATAAACTGTCTTAAGGTAAACTTAACCAG
droWil2 scf2_1100000004513:100811-101066 - GG---------AAAT------------------------AAAGAAAGAAGAGAAAA------CGG---ATGCAAAGAAAATTCAAGAAAACTCATCTTGTGACGAATGCCATAAACAGGCGGTTAAAATAAAGGAACTTGAACGCGAAATGTCCAAATTGATGGCTGAAAATATAGAAACTATGGAAATGGTAAATGATTTAATA----TTC--GAG-AAA--TTTCAAA-AATTTA----------------------C-AC----------------------AA---AT-------AT------TAATTTTTGTAGAAAAAAATCTATATTGATGAAATTAATTGCCTGAAAGTAAACCTAACCTG
dp5 3:10850153-10850447 + TA---------AATTGCAGAATTCCTTCGAGTTTGTACCGAAAGATAGCGAAAAGGCGGCGGAGATTGAAGTGAGCAATCCGCTGAACTATGTGCAGCGAGAAGAACATGATCGT---------CAAATCCGGGAACTGCAGCGAGAGCTGTCCAAAATATTGGCCGAGAATCTGGAAGTGAACGATATGGTTTGTATTCCCAAA----TG-----C---ATGATCTCA-TGATGAG------AACTTTTTTGTACATAC-TT--------------------AATG---CGAC-------------TTATATTTTTAGAAAAAAGTATACATTCAGGAGATCGATTGCTTAAAGGTGAACTTGACAAG
droPer2 scaffold_4:6173342-6173636 + TA---------AATTGCAGAATTCCTTCGAGTTTGTACTGAAAGATAGCGAAAAGGCGGCGGAGATTGAAGTGAGCAATCCGCTGAACTATGTGCAGCGAGAAGAACATGATCGT---------CAGATCCGGGAACTGCAGCGAGAGCTGTCCAAAATATTGGCCGATAATCTGGAAGTGAACGATATGGTTTGTATTCCCAAA----TG-----C---ATGATCTCA-TGATGAG------AACTTTTTTGTACATAC-TT--------------------AATG---CGAC-------------TTATATTTTTAGAAAAAAGCATACATTCAGGAGATCGATTGCTTAAAGGTGAACTTGACAAG
droAna3 scaffold_13266:11961304-11961583 - GC---------CATTGCAGCACTCGTTCGAATTTGTAACTGATGACGGACCCAAGCCGGGGCCGGAAAGCGAGAGCACGGCTCTAAATTATGTGCAACGGGAGGAGCACGAACGC---------CAGGTTCGAGAGCTAAATCATAAACTCTCCCAGTTGATGGCGGAGAACCTGGAAATCAAGGATATGGTACCAACATTTGTC----GCC-CATT----------GTT-CACTCAAATA-------------------------AAAT-------------AACG---AT--------------ATTAAATCCCCAGAAAAAAACCTATGTGGAGGAGATTGACTGCTTGAAGGTTAACTTGACCAG
droBip1 scf7180000396547:518268-518545 + -------------TTGCAGCACTCGTTCGAATTTGTACCTGATGACGGAGCCACTGCGGCGAAGGAAAGCGAGGGCACGGCTTTAAATTATGTGCAAAGGGAAGAACACGATCGG---------CAGGTGCGGGAGCTAAAACAACAACTATCCCAATTGCTGGCTGAGAACCTAGAAATCAAGGATATGGTAAGAACATTTGTC----GCA-----------------T-GTTTCTTCACTC-----------------CA-ATACTAT-------------GATG---AA-------AT------TAATATCCTTAGAAAAAAACCTATGTGGAGGAGATTGATTGCTTAAAGGTAAACTTGACCAG
droKik1 scf7180000302411:390600-390876 + AT--------ATGTTACAGCACTCGTTCGAATTCGTACCTGAGGAGGGTGCCAAGGCCGAACCGG---ATGCTGCCCTGGCCTTAAACTATGTGCAGCGGGACGAGCATGATCGC---------CAAGTGCGGGAGCTGAAGCATCAGCTCTCAGAGGTCGTGGCAGAGAACCTTGAAATCAGGGAAATGGTGAGTGCTATC---TCC-CCC--AAG-TCA--GTATCA-GTATCAG------TA----------------------------------------TG---TT-------------TCCCCACTTTGCAGAAGAAAACCTACATTGAGGAGATCGATTGCTTAAAGGTCAACCTAACCAG
droFic1 scf7180000453858:831727-832014 + A----------TATTGCAGCACTCATTTGAATTTGTACCTGAGGACGGAGGCCAAACAGAACCGG---ACCCAGCCAAGGCCTTGAACTATGTCCAGCGGGACGAACATGACCGT---------CAAGTGATGGAGTTACAACGTCAGCTCTCTAAGCTAATGGCGGAGAATCTGGAGGCCAACGACATGGTTTGTACTTTT---TGATTA-ACTAT-T---------------GTGAGTA-------------------------AAACAACCACCTTAACGC-TA---TTT----------TCTGTACAACCTACAGAGGAAAACCTACATTGAAGAGATTGACTGCTTAAAAGTAAATCTGACCAG
droEle1 scf7180000491214:2210732-2211023 - CCTTTTCGTGATATTACAGCACTCGTTCGAGTTTGTACCTGAGGATGGAGGCAAAACCGATGCGG---ATCCGGACAAGGCATTGAACTATGTGCAACGGGACGAACACGATCGC---------CAAGTGCGGGACCTGCAGCGCCAGCTCTCCAAGCTGGTGGCAGAGAACCTTGAGATCACCGACATGGTTTGTATTTCGCCG----TGC-CATTT-------C-TTT-GAATC---------------------TTC-TT---AAAC-------------AATA------------ATT-GCTTGTTAACTTGCAGAAGAATACCTATATCGAGGAGATCGACTGCTTGAAGGTGAACCTGACCAG
droRho1 scf7180000777251:228576-228856 + A----------TATTACAGCACTCATTCGAGTTCGTACCTGAAGACGGTGGCAAAACCGAACCGG---ATCCGGACAAGGCTTTGCACTATGTGCAGCGGGACGAACACGATCGC---------CAAGTGCGGGACTTGCAGCGTCAGCTTTCTAAGCTGGTGGCGGAAAATCTGCAGATCACCGACATGGTTTGTACTTTTGTC----CGC-CCTCG-------C-TTT-GAGTCTCCTATA-----------------CT---------------------G-TA------------ACT-ATTGTTTGACTTGCAGGAAAAGACCTATCTCGAGGAGATTGACTGCCTGAAGGTGAATCTGACTAG
droBia1 scf7180000301754:3220718-3220995 + TC--------ATATTGCAGCACTCGTTCGAGTTCGTACCTGAGGACGGAGACAAAACTGATCCTG---ATCCAAGCAAGGCTTTGCACTATGTCCAAAGGGACGAGCACGATCGT---------CAAGTGAGGGAATTGCAGCGCCAGCTGTCTAAACTGCTGGCGGAGAACCTCGAGATCAATGACATGGTTTGTGCTTGCATT----GCC--TGT---ATGGTTGCCC-GAC--------------------------CT---------------------C-TCATTCT-------TC------TACCACTTGCAGAAAAAGACCTATATCGAGGAGATCGACTGCCTGAAGGTTAACTATACCAG
droTak1 scf7180000415805:573666-573941 + AT---------CTTTGCAGCACTCGTTCGAGTTCGTACCTGAGGAGGGAGACAAAGCGGATCAGG---ATCCGGACAAGGCCTTGAACTATGTGCAAAGGGACGAGCACGATCGC---------CAGGTGCGCGAGTTGCAGCGCCAGCTCTCTAAGCTGGTGGCGGAGAACCTGGAGATCAACGACATGGTTTGTACATAC--------C-GATTCT-------C-G----GTTCAACTAAA-----------------CT---------------------C-GA---ATTC---TAAC------TACGCCTTGCAGAAAAAGACCTACATCGAGGAGATCGACTGTCTGAAGGTCAACTATACAAG
droEug1 scf7180000409464:1031059-1031338 - CT--------ATATTGCAGCACTCATTCGAGTTTGTTCCTGAGGATGGGGGCAAAACTGAAGCGG---ATCCGGACAAAGCTCTGAATTATGTGCAACGGGAAGAGCACGATCGG---------CAGGTGCGTGAATTGCAGGGACAGCTCTCTAAATTGGTGGCGGAATGTCTTGAGGTCAACGACATGGTTTGTACTTTTACT----TA-GCTACT-------C-GTT-AGTTTACATACT-----------------TT---------------------G-TA---ACTC-------------CTCCACTTGCAGAAAAAAACCTATATCGAGGAGATCGACTGTTTGAAGGTGAACTTAACGAG
droSim2 2r:21135963-21136230 - dsi_19295 ------------------GCATTCGTTTGAGTTCGTACCAGAGGATGCAACCAATTCGAAACTTG---ACCCGAACATGGCTTTGGACTATGTGCAAAGGGACGAGCACGACCGA---------CAGGTGCAGAACCTAAAGGGCCAGCTCTCTAAACTCGTGGCTGAAAGCCTGAAA---------ATGGTTTGTGATTTTATT----CT-GCTGTG-------C-GAT-GCTGAAACTAAG-----------------CT---------------------T-TA---ACTTCTATAAT------TATGACTTGCAGAAAGGAACCTATATTGAGGAGATCGATTGCTTAAAGGTTAACTTGGTGAG
droSec2 scaffold_23:530225-530492 - ------------------GCATTCGTTTGAGTTCGTACCAGAGGATGCAACCAAATCGAAACCTG---ACCCGAACATGGCTTTGGACTATGTGCAAAGGGACGAGCACGATCGA---------CAGGTGCAGAACCTAAAGGGCCAGCTCTCTAAACTCGTGGCTGAAAGCCTGAAA---------ATGGTTTGTGATTTTATT----CT-GCTGTG-------C-GAT-GCTGAAACTAAG-----------------CT---------------------T-TA---ACTTCTATAAT------TATGACTTGCAGAAAGGAACCTATATTGAGGAGATCGATTGCTTAAAGGTTAACTTGGTGAG
droYak3 2R:20633190-20633467 - A----------TATTCCAGCACTCGTTTGAGTTTGTACCTGAGGACGGATCCCAAAAGGAACCTG---ACCCGAGCATGGCTTTGAACTATGTTCAAAGGGACGAGCACGATCGC---------CAGGTGCGGGACCTTCAGCGCCAGCTCTCTAAACTCTTAGCTGAAAACCTGGAGGTCACTGAAATGGTTTGTGTTTGTATA----CT-GCTACG-------C-GAT-GTTTCTACATAA-----------------CT---------------------A-TA---ACAC-------------CTCGAATTGCAGAAAAAAACCTATATTGAGGAGATCGACTGCTTAAAGGTTACCTTGGCGAG
droEre2 scaffold_4845:22035711-22035991 - GA---------TTTTCCAGCACTCGTTTGAGTTCGTACCTGAGAATGGATCAAACACGGAACCTG---ACCCCGGCATGGCTTTGAACTATGTGCAAAGGGACGAGCACGATCGC---------CAGGTGCGCGACCTTCAGCGCCAACTCTCTAAGCTCGTAGTTGAAAACCTGGAAATCACTGACATGGTTTGTGCTTTT---TACAAT-GATACG-------C-GAT-GTTTCTACAAAG-----------------CT---------------------A-TA---T------------TACACACAACTTGCAGAAAAAAACCTATATTGAGGAGATCGACTGCTTAAAAGTTACCTTGGCGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AC---------ATTTACAGAATTCTTACGAGTATGTGCCTGATGAGAGTAT---TCCCGAGCCGG---ATTATAAGAAAATATT---------------AGA------CGAACAT---------GAAGTCAAAGATCTGCAGCGACAGATGTCTGCATTATTGGCCGAAAATCTGGAATTTAAGGACATGGTTTGTACCGCA---TAAAAA-ACCAG-T---------------CGTAATA-------------------------AACT-------------AATA---A------------ATTCTTTAATTTTTAGAAAAAAACCTATATTGAGGAAATAGATTGCTTGAAGGTGAACTTAACCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................AAATAGATTGCTTGAAGGT............1915.005003000000001000000000100000000000000000000000000000000000000000
..............................GTATGTGCCTGATGAGAGT................................................................................................................................................................................................................................................................................................................................1914.004000000000000000000000000000003000000000000000000000000000000010
.......................CTTACGAGTATGTGCCTGATGAGAGT................................................................................................................................................................................................................................................................................................................................2613.003001000000000000000000000000000010000000000000000000000000000010
.................................................AT---TCCCGAGCCGG---ATTATAAG.....................................................................................................................................................................................................................................................................................................2112.002200000000000000000000000000000000000000000000000000000000000000
.................................TGTGCCTGATGAGAGTAT---TCC........................................................................................................................................................................................................................................................................................................................2112.002000000000020000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................ATTGAGGAAATAGATTGCTT..................2012.002000000000000001000000000000000000000000000000000000000000000010
....................................................................................................GA------CGAACAT---------GAAGTCAAAGATCTGCAG...................................................................................................................................................................................................................................2712.002001000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GAAATAGATTGCTTGAAGGT............2011.001000100000000000000000000000000000000000000000000000000000000000
...........................CGAGTATGTGCCTGATGAGAGT................................................................................................................................................................................................................................................................................................................................2211.001000000000001000000000000000000000000000000000000000000000000000
................................................................................................................................................................TTGGCCGAAAATCTGGAATTTAA..........................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................CAAAGATCTGCAGCGACAGATGTCTGC.....................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..................................................T---TCCCGAGCCGG---ATTATAAGAAAATA...............................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................AATAGATTGCTTGAAGGT............1811.001001000000000000000000000000000000000000000000000000000000000000
..................................................T---TCCCGAGCCGG---ATTATAAGA....................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AGATTGCTTGAAGGTGAACTTA.....2211.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................ATAGATTGCTTGAAGGTGAA.........2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ATATTGAGGAAATAGATTGCTTGAAGGT............2811.001000000000000000000000000000000000000000000000000000000000000010
...............................TATGTGCCTGATGAGAGT................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................ATAAGAAAATATT---------------AGA------CGAA.................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.........................TACGAGTATGTGCCTGATGAGAGTAT---...........................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
...........................................GAGAGTAT---TCCCGAGCCGG---A............................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................AGATTGCTTGAAGGTGAACTTAACC..2511.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AACCTATATTGAGGAAATAGATTGCT...................2611.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................GATTGCTTGAAGGTGAACT.......1911.001001000000000000000000000000000000000000000000000000000000000000
.........................TACGAGTATGTGCCTGATGAGAGT................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
..........................................TGAGAGTAT---TCCCGAGCCG.................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................CTGCATTATTGGCCGAAAATCTGGAAT..............................................................................................................................................................................................2711.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................AAATATT---------------AGA------CGAACAT---------GAAGT................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AAATAGATTGCTTGAAGGTGAACTT......2511.001000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................ACCTATATTGAGGAAATAGATTGCTT..................2611.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GGAAATAGATTGCTTGAAG..............1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................CGAACAT---------GAAGTCAAAGATCT.......................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
........................................GATGAGAGTAT---TCCCGAGC...................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................CGAACAT---------GAAGTCAAAGAT.........................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
................................................................................................................CAT---------GAAGTCAAAGATCTGC.....................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................CAAAGATCTGCAGCGACAGA............................................................................................................................................................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................AGCGACAGATGTCTGCATTATTGGCC...........................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CCTATATTGAGGAAATAGA........................1911.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................GACAGATGTCTGCATTATTGGC............................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
........................TTACGAGTATGTGCCTGATGAGAGT................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ACAT---------GAAGTCAAAGATCTG......................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................GAACAT---------GAAGTCAAAGATCT.......................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................AGCGACAGATGTCTGCATTATT...............................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................AGATCTGCAGCGACAGATGTCT.......................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
...........................................GAGAGTAT---TCCCGAGCCGG---ATT..........................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................CGAAAATCTGGAATTTAAGGA.......................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
.................................................................................ATT---------------AGA------CGAACAT---------GAAGTC...............................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................GAAAATATT---------------AGA------CGAACAT---------.....................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................CGAACAT---------GAAGTCAAAGATCTGC.....................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ATATTGAGGAAATAGATTGCTTG.................2311.001000000001000000000000000000000000000000000000000000000000000000
.............................................GAGTAT---TCCCGAGCCGG---ATT..........................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
AA---------ATTTGCAGCATTCTTACGAATTTGTCCCTGATGATGGAAGTGT---GG------------------CGCCTGTAAAATGTCTGAAGAGCGGTGATCAGGACAAC---------AAAGTTAAGGATCTACAGCGACAAATGTCTGCACTGTTGGCAGAGAACTTAGAATTTAAGGACATGGTGAGTACTCTT---TATAAA-AACAAA-------T-CAT-TTTCGTAT----------------------TC--------------------AATG---A------------CTTACATACCTTACAGAAAAAGACGTATATCGAGGAAATAGATTGCCTCAAGGTTAACTTGACCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................GAAGAGCGGTGATCAGGAC.................................................................................................................................................................................................................................................................1912.002200000
.................................................................................................................................................CAAATGTCTGCACTGTTGG.............................................................................................................................................................................................................1912.002200000
........................................................................................................................................CTACAGCGACAAATGTCTGCACTGTTGG.............................................................................................................................................................................................................2811.001100000
..................................................................................................................................................................................................................................................................................................................................................AAATAGATTGCCTCAAGGTT...........2011.001100000
..................................GTCCCTGATGATGGAAGTGT---GG------------------CGCC................................................................................................................................................................................................................................................................................................2611.001000001
..................................................................................GTAAAATGTCTGAAGAGCGGTGAT.......................................................................................................................................................................................................................................................................2411.001100000
.........................................................GG------------------CGCCTGTAAAATGTCTGAAGAGCGG...........................................................................................................................................................................................................................................................................2711.001000001
..................................................................................GTAAAATGTCTGAAGAGCGGTGATCAGG...................................................................................................................................................................................................................................................................2811.001000001
...............................................................................................................CAAC---------AAAGTTAAGGATCTACA....................................................................................................................................................................................................................................2111.001100000
......................................................................................................................................................................GAGAACTTAGAATTTAAGGA.......................................................................................................................................................................................2011.001001000
........................................................................................................................................................................................................................................................................................................................................TATATCGAGGAAATAGATTGCCT..................2311.001100000
............................................................................................................................................................................................................................................................................................ATG---A------------CTTACATACCTTAC....................................................1811.001000010
..................................................................................GTAAAATGTCTGAAGAGCG............................................................................................................................................................................................................................................................................1911.001000001
..................................GTCCCTGATGATGGAAGTGT---GG------------------CGC.................................................................................................................................................................................................................................................................................................2511.001000001
.................................................................................................................................................CAAATGTCTGCACTGTTGGCA...........................................................................................................................................................................................................2111.001100000
.........................................ATGATGGAAGTGT---GG------------------CGCCTGTA............................................................................................................................................................................................................................................................................................2311.001000001
droGri2
AA---------ATTGACAGCATTCTTACGACTTTGTGCCTGATGTTGA---CAATGCGGAACCTG---AAATCG---------------ATATAAAGCGCGAAAAACATGAAAGT---------CAAGTCAAGGATCTTCAGAGACAGGTCTCTGAATTACTGGCCGAAAATCTAGAAATCAAAGACATGGTTTGTACAATG---TAT-ACA-AA-A-------CTCACC-AAATT----------------------------------------------------------ATATAATCAATCTGCTAAATTACAGAAGAAAACCTATGTCGACGAAATAAACTGTCTTAAGGTAAACTTAACCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................ACAGGTCTCTGAATTACTGGC............................................................................................................................................................................................................2111.00110
...................................................................................................................................................GGTCTCTGAATTACTGGCC...........................................................................................................................................................................................................1911.00110
droWil2
GG---------AAAT------------------------AAAGAAAGAAGAGAAAA------CGG---ATGCAAAGAAAATTCAAGAAAACTCATCTTGTGACGAATGCCATAAACAGGCGGTTAAAATAAAGGAACTTGAACGCGAAATGTCCAAATTGATGGCTGAAAATATAGAAACTATGGAAATGGTAAATGATTTAATA----TTC--GAG-AAA--TTTCAAA-AATTTA----------------------C-AC----------------------AA---AT-------AT------TAATTTTTGTAGAAAAAAATCTATATTGATGAAATTAATTGCCTGAAAGTAAACCTAACCTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............AT------------------------AAAGAAAGAAGAGAAAA------CGG---ATGC.........................................................................................................................................................................................................................................................................................................2612.00200200
.G---------AAAT------------------------AAAGAAAGAAGAGAAAA------CGG---A............................................................................................................................................................................................................................................................................................................2611.00100100
.................................................GAGAAAA------CGG---ATGCAAAGAAAATTCAA............................................................................................................................................................................................................................................................................................2711.00100010
...................................................GAAAA------CGG---ATGCAAAGAAA..................................................................................................................................................................................................................................................................................................1911.00100100
..........................................................................................................................TTAAAATAAAGGAACTTGAAC..................................................................................................................................................................................................................................2111.00100100
...........................................AAAGAAGAGAAAA------CGG---ATGC.........................................................................................................................................................................................................................................................................................................2011.00101000
.......................................AAAGAAAGAAGAGAAAA------CGG---A............................................................................................................................................................................................................................................................................................................2111.00100100
................................................................................................................................................................................................................................................................................................................................................TGAAATTAATTGCCTGAAAGT............2111.00101000
......................................................................................................................................AACTTGAACGCGAAATGTCCA......................................................................................................................................................................................................................2111.00101000
..............T------------------------AAAGAAAGAAGAGAAAA------CGG---.............................................................................................................................................................................................................................................................................................................2111.00100100
............................................................................................................................AAAATAAAGGAACTTGAACGC................................................................................................................................................................................................................................2111.00100010
..............................................................................................................................................CGCGAAATGTCCAAATTGATGG.............................................................................................................................................................................................................2211.00100100
............................................................................................................................AAAATAAAGGAACTTGAA...................................................................................................................................................................................................................................1811.00101000
........................................................................................................................................................................................................................................................................................................................................................ATTGCCTGAAAGTAAACCT......1911.00101000
........................................................................................................................................................................................................................................ATTTA----------------------C-AC----------------------AA---AT-------AT------TAATTTTTGTAG..................................................2611.00101000
.......................................................................................................................................ACTTGAACGCGAAATGTCCAAATT..................................................................................................................................................................................................................2411.00100010
................................................................................................................................TAAAGGAACTTGAACGCGAAA............................................................................................................................................................................................................................2111.00101000
........................................AAGAAAGAAGAGAAAA------CGG---.............................................................................................................................................................................................................................................................................................................1911.00100001
..........................................GAAAGAAGAGAAAA------CGG---AT...........................................................................................................................................................................................................................................................................................................1911.00100100
.......................................................................................AAACTCATCTTGTGACGAATGCC...................................................................................................................................................................................................................................................................2311.00100100
...................................................................................................TGACGAATGCCATAAACAGGC.........................................................................................................................................................................................................................................................2111.00101000
............AAT------------------------AAAGAAAGAAGAGAAAA------CGG---A............................................................................................................................................................................................................................................................................................................2411.00100100
GG---------AAAT------------------------AAAGAAAGAAGAGAAAA------C..................................................................................................................................................................................................................................................................................................................2411.00100100
.G---------AAAT------------------------AAAGAAAGAAGAGA............................................................................................................................................................................................................................................................................................................................1920.50100100
dp5
TA---------AATTGCAGAATTCCTTCGAGTTTGTACCGAAAGATAGCGAAAAGGCGGCGGAGATTGAAGTGAGCAATCCGCTGAACTATGTGCAGCGAGAAGAACATGATCGT---------CAAATCCGGGAACTGCAGCGAGAGCTGTCCAAAATATTGGCCGAGAATCTGGAAGTGAACGATATGGTTTGTATTCCCAAA----TG-----C---ATGATCTCA-TGATGAG------AACTTTTTTGTACATAC-TT--------------------AATG---CGAC-------------TTATATTTTTAGAAAAAAGTATACATTCAGGAGATCGATTGCTTAAAGGTGAACTTGACAAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................AAATATTGGCCGAGAATCTGGA................................................................................................................................................................................................2214.0040400000000
......................................................................................................................................................................................................................................................................................................................................................CGATTGCTTAAAGGTGAACT.......2013.0030300000000
..................................................................................CTGAACTATGTGCAGCGAGA...........................................................................................................................................................................................................................................................................2012.0021100000000
.............................................................................................................................AAATCCGGGAACTGCAGCGAGAGCT...........................................................................................................................................................................................................................2512.0020200000000
.....................................CCGAAAGATAGCGAAAAGGCGGC.....................................................................................................................................................................................................................................................................................................................2312.0020200000000
.................................................................................................................GT---------CAAATCCGGGAACTGCAGCGAGA..............................................................................................................................................................................................................................2512.0020100001000
.................................................................................................................................................................TGGCCGAGAATCTGGAAGT.............................................................................................................................................................................................1911.0010000001000
...........................................................................................................ATGATCGT---------CAAATCCGGGAAC........................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................AGAACATGATCGT---------CAAATCCGGG...........................................................................................................................................................................................................................................2311.0010000001000
..................................................................................................................................................................................................................................................................................................................................................AGATCGATTGCTTAAAGGT............1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................AAAGTATACATTCAGGAGATCGATTG.....................2611.0010100000000
.....................................................................................................................................................................CGAGAATCTGGAAGTGAACGATAT....................................................................................................................................................................................2411.0010100000000
......................................................................................................................................................................GAGAATCTGGAAGTGAACGAT......................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................GAAAAAAGTATACATTCAGGAGAT...........................2411.0010100000000
....................................................................................GAACTATGTGCAGCGAGAAG.........................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................CGATTGCTTAAAGGTGAACTTGACA..2511.0010100000000
...................................................................................TGAACTATGTGCAGCGAGAAGAACAT....................................................................................................................................................................................................................................................................2611.0010000000010
...........................................................................................................................................................AAATATTGGCCGAGAATCTGGAA...............................................................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................CGAGAATCTGGAAGTGAACGAT......................................................................................................................................................................................2211.0010100000000
..............................................................................................................................AATCCGGGAACTGCAGCGAGAGCT...........................................................................................................................................................................................................................2411.0010100000000
.....................................CCGAAAGATAGCGAAAAGGCGGCG....................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................GTGCAGCGAGAAGAACATGATC................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................GATTGCTTAAAGGTGAACTTGAC...2311.0010100000000
.......................................................................................................GAACATGATCGT---------CAAATCCGGGAACTGC.....................................................................................................................................................................................................................................2811.0010000001000
...........................................GATAGCGAAAAGGCGGCGGA..................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................ATTCAGGAGATCGATTGCTTAAAGGT............2611.0010100000000
........................................................................GAGCAATCCGCTGAACTATGT....................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................ATCCGGGAACTGCAGCGAG...............................................................................................................................................................................................................................1911.0010000010000
......................................................................................................................................................................................................................................................................................................................................................CGATTGCTTAAAGGTGAACTTGAC...2411.0010100000000
..................................................................................................................................................................GGCCGAGAATCTGGAAGTGAA..........................................................................................................................................................................................2111.0010000001000
.................................................................................................................................CCGGGAACTGCAGCGAGAGCTGT.........................................................................................................................................................................................................................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................................................ATCGATTGCTTAAAGGTGAACT.......2211.0010100000000
...............................................GCGAAAAGGCGGCGGAGATTGAAGTG........................................................................................................................................................................................................................................................................................................2611.0010100000000
..................................................................................................................................CGGGAACTGCAGCGAGAGC............................................................................................................................................................................................................................1911.0010100000000
.................................TGTACCGAAAGATAGCGAAAAGGCGGC.....................................................................................................................................................................................................................................................................................................................2711.0010000001000
...........................................GATAGCGAAAAGGCGGCG....................................................................................................................................................................................................................................................................................................................1811.0010100000000
..................................................................................................................................................................GGCCGAGAATCTGGAAGTGAACG........................................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................AAAAAGTATACATTCAGGA..............................1911.0010100000000
..................................................AAAAGGCGGCGGAGATTGAAGTGA.......................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................................................................................................................................................TGGCCGAGAATCTGGAAGTG............................................................................................................................................................................................2011.0010000001000
.........................TTCGAGTTTGTACCGAAAGATAGCGA..............................................................................................................................................................................................................................................................................................................................2611.0010100000000
........................................................................................................................................................................................................................................................................................................................................................ATTGCTTAAAGGTGAACTTGACA..2311.0010100000000
......................................................GGCGGCGGAGATTGAAGT.........................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................................................................................................................AATCCGGGAACTGCAGCGA................................................................................................................................................................................................................................1911.0010100000000
....................................................AAGGCGGCGGAGATTGAAGTGAGCA....................................................................................................................................................................................................................................................................................................2511.0010000010000
.............................................................GAGATTGAAGTGAGCAAT..................................................................................................................................................................................................................................................................................................1811.0010100000000
..........................................................GCGGAGATTGAAGTGAGC.....................................................................................................................................................................................................................................................................................................1811.0010100000000
........................................................................................................AACATGATCGT---------CAAATCCGGGA..........................................................................................................................................................................................................................................2211.0010100000000
.........................................................................................................ACATGATCGT---------CAAATCCGGGA..........................................................................................................................................................................................................................................2111.0010100000000
...............................................................GATTGAAGTGAGCAATCCGCTGAA..........................................................................................................................................................................................................................................................................................2411.0010100000000
....................................................................................GAACTATGTGCAGCGAGAAGA........................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................AAAGTATACATTCAGGAGATCGATTGC....................2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................TTGCTTAAAGGTGAACTTGAC...2111.0010100000000
................................................................................................................................TCCGGGAACTGCAGCGAGAGCT...........................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................GAGAGCTGTCCAAAATATTGGC............................................................................................................................................................................................................2211.0010100000000
..........................................................................................TGTGCAGCGAGAAGAACATG...................................................................................................................................................................................................................................................................2011.0010000000010
............................................................................................................................CAAATCCGGGAACTGCAGCGAGAGCT...........................................................................................................................................................................................................................2611.0010000001000
.......................................................................................................................................................................AGAATCTGGAAGTGAACG........................................................................................................................................................................................1811.0010100000000
......................................................................................................AGAACATGATCGT---------CAAATCCGGGAAC........................................................................................................................................................................................................................................2611.0010000000001
..........................................AGATAGCGAAAAGGCGGC.....................................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................................................................................................ATCGT---------CAAATCCGGGAACTGCAGCGAGA..............................................................................................................................................................................................................................2811.0010100000000
............................................................................................................................CAAATCCGGGAACTGCAGCGA................................................................................................................................................................................................................................2111.0010100000000
...............................................................GATTGAAGTGAGCAATCCGCT.............................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................GAAAAGGCGGCGGAGATTGAA...........................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................TACATTCAGGAGATCGATTGCTT..................2311.0010100000000
......................................................................................................................................................................................................................................................................................................................................................CGATTGCTTAAAGGTGAACTTG.....2211.0010100000000
..................GAATTCCTTCGAGTTTGTACCGA........................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................................AAGATAGCGAAAAGGCGGCG....................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................GGCCGAGAATCTGGAAGTGAACGATA.....................................................................................................................................................................................2611.0010000001000
..........................................AGATAGCGAAAAGGCGGCGGAG.................................................................................................................................................................................................................................................................................................................2211.0010100000000
.........................................................GGCGGAGATTGAAGTGAGC.....................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................CGT---------CAAATCCGGGAACTGCAGCGAGAGC............................................................................................................................................................................................................................2811.0010100000000
.....................................CCGAAAGATAGCGAAAAGGCGG......................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................................ATAGCGAAAAGGCGGCGGA..................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................................AGGAGATCGATTGCTTAAAGG.............2111.0010100000000
............................................................................................................................CAAATCCGGGAACTGCAGCGAGA..............................................................................................................................................................................................................................2311.0010000001000
...................................................................................................................................GGGAACTGCAGCGAGAGCT...........................................................................................................................................................................................................................1920.5010100000000
droPer2
TA---------AATTGCAGAATTCCTTCGAGTTTGTACTGAAAGATAGCGAAAAGGCGGCGGAGATTGAAGTGAGCAATCCGCTGAACTATGTGCAGCGAGAAGAACATGATCGT---------CAGATCCGGGAACTGCAGCGAGAGCTGTCCAAAATATTGGCCGATAATCTGGAAGTGAACGATATGGTTTGTATTCCCAAA----TG-----C---ATGATCTCA-TGATGAG------AACTTTTTTGTACATAC-TT--------------------AATG---CGAC-------------TTATATTTTTAGAAAAAAGCATACATTCAGGAGATCGATTGCTTAAAGGTGAACTTGACAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................CATTCAGGAGATCGATTGC....................1911.001000010
.......................................GAAAGATAGCGAAAAGGCGGC.....................................................................................................................................................................................................................................................................................................................2111.001000001
.....................................CTGAAAGATAGCGAAAAGGCGGC.....................................................................................................................................................................................................................................................................................................................2311.001100000
...................................................................................................................................................................................................................................................................................................................................................GATCGATTGCTTAAAGGT............1811.001010000
...................................................................................................................................GGGAACTGCAGCGAGAGCTGTCC.......................................................................................................................................................................................................................2311.001010000
droAna3
GC---------CATTGCAGCACTCGTTCGAATTTGTAACTGATGACGGACCCAAGCCGGGGCCGGAAAGCGAGAGCACGGCTCTAAATTATGTGCAACGGGAGGAGCACGAACGC---------CAGGTTCGAGAGCTAAATCATAAACTCTCCCAGTTGATGGCGGAGAACCTGGAAATCAAGGATATGGTACCAACATTTGTC----GCC-CATT----------GTT-CACTCAAATA-------------------------AAAT-------------AACG---AT--------------ATTAAATCCCCAGAAAAAAACCTATGTGGAGGAGATTGACTGCTTGAAGGTTAACTTGACCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................CCAGTTGATGGCGGAGAACCT...................................................................................................................................................................................................2111.001000001
...................................................................................................................................................................................................................................GTT-CACTCAAATA-------------------------AAAT-------------AAC...................................................................................2011.001010000
......................................................................................................................................................CTCCCAGTTGATGGCGGAGAACCTGGA................................................................................................................................................................................................2711.001010000
...........................................................................................................................................AATCATAAACTCTCCCAGTT..................................................................................................................................................................................................................2011.001010000
...........................................................................................................................................AATCATAAACTCTCCCAGTTGATGGCG...........................................................................................................................................................................................................2711.001100000
....................................................................................................................................................................................................................................................................................................................................AACCTATGTGGAGGAGATTGACTGCTT..................2711.001000001
.................................................................................................................GC---------CAGGTTCGAGAGCTAAA....................................................................................................................................................................................................................................1911.001000100
.....................................................................................................................................................................................................................................................................................................................................ACCTATGTGGAGGAGATTGACT......................2211.001100000
...............................................................................................................................................................GATGGCGGAGAACCTGGAAATCAAGG........................................................................................................................................................................................2611.001000010
........................................................................................................................................CTAAATCATAAACTCTCCCAG....................................................................................................................................................................................................................2111.001100000
.................................TGTAACTGATGACGGACCCAAGC.........................................................................................................................................................................................................................................................................................................................2311.001000001
..............................ATTTGTAACTGATGACGGACCCA............................................................................................................................................................................................................................................................................................................................2311.001100000
...................................................................................................................................................................GCGGAGAACCTGGAAATCAAGGATATG...................................................................................................................................................................................2711.001000001
.....................................ACTGATGACGGACCCAAGCC........................................................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................CACGAACGC---------CAGGTTCGAGAGCTAAATC..................................................................................................................................................................................................................................2811.001000010
...............................................GACCCAAGCCGGGGCCGGAAAGC...........................................................................................................................................................................................................................................................................................................2311.001000010
...............................................................................................................................................ATAAACTCTCCCAGTTGATGGCGGA.........................................................................................................................................................................................................2511.001000001
droBip1
-------------TTGCAGCACTCGTTCGAATTTGTACCTGATGACGGAGCCACTGCGGCGAAGGAAAGCGAGGGCACGGCTTTAAATTATGTGCAAAGGGAAGAACACGATCGG---------CAGGTGCGGGAGCTAAAACAACAACTATCCCAATTGCTGGCTGAGAACCTAGAAATCAAGGATATGGTAAGAACATTTGTC----GCA-----------------T-GTTTCTTCACTC-----------------CA-ATACTAT-------------GATG---AA-------AT------TAATATCCTTAGAAAAAAACCTATGTGGAGGAGATTGATTGCTTAAAGGTAAACTTGACCAGSizeHit CountTotal NormTotal
No Reads
droKik1
AT--------ATGTTACAGCACTCGTTCGAATTCGTACCTGAGGAGGGTGCCAAGGCCGAACCGG---ATGCTGCCCTGGCCTTAAACTATGTGCAGCGGGACGAGCATGATCGC---------CAAGTGCGGGAGCTGAAGCATCAGCTCTCAGAGGTCGTGGCAGAGAACCTTGAAATCAGGGAAATGGTGAGTGCTATC---TCC-CCC--AAG-TCA--GTATCA-GTATCAG------TA----------------------------------------TG---TT-------------TCCCCACTTTGCAGAAGAAAACCTACATTGAGGAGATCGATTGCTTAAAGGTCAACCTAACCAGSizeHit CountTotal NormTotal
No Reads
droFic1
A----------TATTGCAGCACTCATTTGAATTTGTACCTGAGGACGGAGGCCAAACAGAACCGG---ACCCAGCCAAGGCCTTGAACTATGTCCAGCGGGACGAACATGACCGT---------CAAGTGATGGAGTTACAACGTCAGCTCTCTAAGCTAATGGCGGAGAATCTGGAGGCCAACGACATGGTTTGTACTTTT---TGATTA-ACTAT-T---------------GTGAGTA-------------------------AAACAACCACCTTAACGC-TA---TTT----------TCTGTACAACCTACAGAGGAAAACCTACATTGAAGAGATTGACTGCTTAAAAGTAAATCTGACCAGSizeHit CountTotal NormTotal
No Reads
droEle1
CCTTTTCGTGATATTACAGCACTCGTTCGAGTTTGTACCTGAGGATGGAGGCAAAACCGATGCGG---ATCCGGACAAGGCATTGAACTATGTGCAACGGGACGAACACGATCGC---------CAAGTGCGGGACCTGCAGCGCCAGCTCTCCAAGCTGGTGGCAGAGAACCTTGAGATCACCGACATGGTTTGTATTTCGCCG----TGC-CATTT-------C-TTT-GAATC---------------------TTC-TT---AAAC-------------AATA------------ATT-GCTTGTTAACTTGCAGAAGAATACCTATATCGAGGAGATCGACTGCTTGAAGGTGAACCTGACCAGSizeHit CountTotal NormTotal
No Reads
droRho1
A----------TATTACAGCACTCATTCGAGTTCGTACCTGAAGACGGTGGCAAAACCGAACCGG---ATCCGGACAAGGCTTTGCACTATGTGCAGCGGGACGAACACGATCGC---------CAAGTGCGGGACTTGCAGCGTCAGCTTTCTAAGCTGGTGGCGGAAAATCTGCAGATCACCGACATGGTTTGTACTTTTGTC----CGC-CCTCG-------C-TTT-GAGTCTCCTATA-----------------CT---------------------G-TA------------ACT-ATTGTTTGACTTGCAGGAAAAGACCTATCTCGAGGAGATTGACTGCCTGAAGGTGAATCTGACTAGSizeHit CountTotal NormTotal
No Reads
droBia1
TC--------ATATTGCAGCACTCGTTCGAGTTCGTACCTGAGGACGGAGACAAAACTGATCCTG---ATCCAAGCAAGGCTTTGCACTATGTCCAAAGGGACGAGCACGATCGT---------CAAGTGAGGGAATTGCAGCGCCAGCTGTCTAAACTGCTGGCGGAGAACCTCGAGATCAATGACATGGTTTGTGCTTGCATT----GCC--TGT---ATGGTTGCCC-GAC--------------------------CT---------------------C-TCATTCT-------TC------TACCACTTGCAGAAAAAGACCTATATCGAGGAGATCGACTGCCTGAAGGTTAACTATACCAGSizeHit CountTotal NormTotal
No Reads
droTak1
AT---------CTTTGCAGCACTCGTTCGAGTTCGTACCTGAGGAGGGAGACAAAGCGGATCAGG---ATCCGGACAAGGCCTTGAACTATGTGCAAAGGGACGAGCACGATCGC---------CAGGTGCGCGAGTTGCAGCGCCAGCTCTCTAAGCTGGTGGCGGAGAACCTGGAGATCAACGACATGGTTTGTACATAC--------C-GATTCT-------C-G----GTTCAACTAAA-----------------CT---------------------C-GA---ATTC---TAAC------TACGCCTTGCAGAAAAAGACCTACATCGAGGAGATCGACTGTCTGAAGGTCAACTATACAAGSizeHit CountTotal NormTotal
No Reads
droEug1
CT--------ATATTGCAGCACTCATTCGAGTTTGTTCCTGAGGATGGGGGCAAAACTGAAGCGG---ATCCGGACAAAGCTCTGAATTATGTGCAACGGGAAGAGCACGATCGG---------CAGGTGCGTGAATTGCAGGGACAGCTCTCTAAATTGGTGGCGGAATGTCTTGAGGTCAACGACATGGTTTGTACTTTTACT----TA-GCTACT-------C-GTT-AGTTTACATACT-----------------TT---------------------G-TA---ACTC-------------CTCCACTTGCAGAAAAAAACCTATATCGAGGAGATCGACTGTTTGAAGGTGAACTTAACGAGSizeHit CountTotal NormTotal
No Reads
droSim2
------------------GCATTCGTTTGAGTTCGTACCAGAGGATGCAACCAATTCGAAACTTG---ACCCGAACATGGCTTTGGACTATGTGCAAAGGGACGAGCACGACCGA---------CAGGTGCAGAACCTAAAGGGCCAGCTCTCTAAACTCGTGGCTGAAAGCCTGAAA---------ATGGTTTGTGATTTTATT----CT-GCTGTG-------C-GAT-GCTGAAACTAAG-----------------CT---------------------T-TA---ACTTCTATAAT------TATGACTTGCAGAAAGGAACCTATATTGAGGAGATCGATTGCTTAAAGGTTAACTTGGTGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................CTCTAAACTCGTGGCTGAAAGC.....................................................................................................................................................................................................2211.00100010000000000000
...........................................................................................................................................................AACTCGTGGCTGAAAGCCT...................................................................................................................................................................................................1911.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................ACCTATATTGAGGAGATCGATTGCTTA.................2711.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................AGATCGATTGCTTAAAGGTTAACTTG.....2611.00100010000000000000
................................................................................................................................TGCAGAACCTAAAGGGCCAGCTCTC........................................................................................................................................................................................................................2511.00100000000010000000
.................................................................................TTTGGACTATGTGCAAAGGGACGA........................................................................................................................................................................................................................................................................2411.00100000010000000000
..............................................................................................................................................................................................................................................CTAAG-----------------CT---------------------T-TA---ACTTCTAT.......................................................................1811.00100001000000000000
...............................................................TG---ACCCGAACATGGCTTTGGACTAT......................................................................................................................................................................................................................................................................................2511.00101000000000000000
.........................................................................................................GCACGACCGA---------CAGGTGCAGA...........................................................................................................................................................................................................................................2011.00100010000000000000
.................................................................................................................................................................................................TGTGATTTTATT----CT-GCTGTG-------C-..............................................................................................................................................2111.00100010000000000000
.......................................................................................................GAGCACGACCGA---------CAGGTGCAGAACC........................................................................................................................................................................................................................................2511.00100000000001000000
.......................................................................................CTATGTGCAAAGGGACGAGCA.....................................................................................................................................................................................................................................................................2111.00100000000001000000
.....................................................ATTCGAAACTTG---ACCCGAACATGGCT...............................................................................................................................................................................................................................................................................................2611.00100000000000001000
................................................................G---ACCCGAACATGGCTTTGGACTAT......................................................................................................................................................................................................................................................................................2411.00101000000000000000
.......................................................TCGAAACTTG---ACCCGAACATGGCTT..............................................................................................................................................................................................................................................................................................2511.00100000000000010000
droSec2
------------------GCATTCGTTTGAGTTCGTACCAGAGGATGCAACCAAATCGAAACCTG---ACCCGAACATGGCTTTGGACTATGTGCAAAGGGACGAGCACGATCGA---------CAGGTGCAGAACCTAAAGGGCCAGCTCTCTAAACTCGTGGCTGAAAGCCTGAAA---------ATGGTTTGTGATTTTATT----CT-GCTGTG-------C-GAT-GCTGAAACTAAG-----------------CT---------------------T-TA---ACTTCTATAAT------TATGACTTGCAGAAAGGAACCTATATTGAGGAGATCGATTGCTTAAAGGTTAACTTGGTGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................GGACGAGCACGATCGA---------CAGGTGC..............................................................................................................................................................................................................................................2311.0011000
....................................................................................................................................................................................................................................................................................................................................AACCTATATTGAGGAGATCGATTGC....................2511.0010100
....................................................................................................................................GAACCTAAAGGGCCAGCTCTCTA......................................................................................................................................................................................................................2311.0011000
................................................................................................AAGGGACGAGCACGATCGA---------CAGGTGC..............................................................................................................................................................................................................................................2611.0010100
..............................................................................................................................................GGCCAGCTCTCTAAACTCGT...............................................................................................................................................................................................................2011.0010001
.............................................................................................................................................................................................................................................................................................................................................TGAGGAGATCGATTGCTTAAAG..............2211.0010100
droYak3
A----------TATTCCAGCACTCGTTTGAGTTTGTACCTGAGGACGGATCCCAAAAGGAACCTG---ACCCGAGCATGGCTTTGAACTATGTTCAAAGGGACGAGCACGATCGC---------CAGGTGCGGGACCTTCAGCGCCAGCTCTCTAAACTCTTAGCTGAAAACCTGGAGGTCACTGAAATGGTTTGTGTTTGTATA----CT-GCTACG-------C-GAT-GTTTCTACATAA-----------------CT---------------------A-TA---ACAC-------------CTCGAATTGCAGAAAAAAACCTATATTGAGGAGATCGACTGCTTAAAGGTTACCTTGGCGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................AAACTCTTAGCTGAAAACCTGG.................................................................................................................................................................................................2211.00100100000000
........................................................................................TATGTTCAAAGGGACGAGCA.....................................................................................................................................................................................................................................................................2011.00101000000000
.........................................................................................................GCACGATCGC---------CAGGTGCGGGACC........................................................................................................................................................................................................................................2311.00100100000000
..............................................................................................CAAAGGGACGAGCACGATCGC---------CAG..................................................................................................................................................................................................................................................2411.00100100000000
..................................GTACCTGAGGACGGATCCCAA..........................................................................................................................................................................................................................................................................................................................2111.00101000000000
...........................................................AACCTG---ACCCGAGCATGGCTTTG............................................................................................................................................................................................................................................................................................2311.00101000000000
..............................GTTTGTACCTGAGGACGGAT...............................................................................................................................................................................................................................................................................................................................2011.00101000000000
...................................................................................TGAACTATGTTCAAAGGGACGA........................................................................................................................................................................................................................................................................2211.00100000010000
................................................................................................................CGC---------CAGGTGCGGGACCTTCAGC..................................................................................................................................................................................................................................2211.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................TAAAGGTTACCTTGGCGAG1911.00101000000000
................................................ATCCCAAAAGGAACCTG---ACCCGAGCAT...................................................................................................................................................................................................................................................................................................2711.00101000000000
....................................................................................................GACGAGCACGATCGC---------CAGGTGCGG............................................................................................................................................................................................................................................2411.00100000010000
.......................................................................................................................................................................................................................................................................................................................................CTATATTGAGGAGATCGACT......................2011.00100100000000
....................................................................................................................................................CTCTCTAAACTCTTAGCTGAA........................................................................................................................................................................................................2111.00101000000000
............................GAGTTTGTACCTGAGGACGGATCCCAA..........................................................................................................................................................................................................................................................................................................................2711.00101000000000
.....................................................................................................................................................................................................................................................................................................................................ACCTATATTGAGGAGATCGACT......................2211.00100000010000
......................................................................................................................................................................................................................................................................................................................................................CGACTGCTTAAAGGTTACCTT......2111.00101000000000
....................................ACCTGAGGACGGATCCCAAAAG.......................................................................................................................................................................................................................................................................................................................2211.00101000000000
......................................CTGAGGACGGATCCCAAAAGGAACCT.................................................................................................................................................................................................................................................................................................................2611.00100000010000
..............................................................................................CAAAGGGACGAGCACGATCGC---------CA...................................................................................................................................................................................................................................................2311.00100000010000
droEre2
GA---------TTTTCCAGCACTCGTTTGAGTTCGTACCTGAGAATGGATCAAACACGGAACCTG---ACCCCGGCATGGCTTTGAACTATGTGCAAAGGGACGAGCACGATCGC---------CAGGTGCGCGACCTTCAGCGCCAACTCTCTAAGCTCGTAGTTGAAAACCTGGAAATCACTGACATGGTTTGTGCTTTT---TACAAT-GATACG-------C-GAT-GTTTCTACAAAG-----------------CT---------------------A-TA---T------------TACACACAACTTGCAGAAAAAAACCTATATTGAGGAGATCGACTGCTTAAAAGTTACCTTGGCGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................GATCAAACACGGAACCTG---ACCCC........................................................................................................................................................................................................................................................................................................2312.0021000100
.........................................................................................................................................................................................................................................................................................................................................ATATTGAGGAGATCGACTG.....................1911.0010000010
...........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGATCGACTGCTTA.................2111.0010000100
....................................................................................GAACTATGTGCAAAGGGACGAGC......................................................................................................................................................................................................................................................................2311.0010000100
.........................................................................................ATGTGCAAAGGGACGAGCACGAT.................................................................................................................................................................................................................................................................2311.0011000000
.............................................................................................................................................GCGCCAACTCTCTAAGCTC.................................................................................................................................................................................................................1911.0010000010
..................................................................................................................................................................................................................................................................................................................................AAAACCTATATTGAGGAGATCGACTGCT...................2811.0011000000
......................................................................................................................................................................................................................................................................................................................................CCTATATTGAGGAGATCGACTGC....................2311.0010000100
..............................................................................................CAAAGGGACGAGCACGATCGC---------CAG..................................................................................................................................................................................................................................................2411.0011000000
......................................................................................................CGAGCACGATCGC---------CAGGTGCGCG...........................................................................................................................................................................................................................................2311.0011000000
...................................................................................................................................GCGACCTTCAGCGCCAACTCTCT.......................................................................................................................................................................................................................2311.0011000000
.......................................................................................................................................................................................................................................................................................................................................CTATATTGAGGAGATCGACTG.....................2111.0011000000
.......................CGTTTGAGTTCGTACCTGAGAAT...................................................................................................................................................................................................................................................................................................................................2311.0010000100
..........................................GAATGGATCAAACACGGAACCTG---AC...........................................................................................................................................................................................................................................................................................................2511.0011000000
...........................................................................................................................................................AGCTCGTAGTTGAAAACCTGGAAATCA...........................................................................................................................................................................................2711.0010000100
...............................................GATCAAACACGGAACCTG---ACC..........................................................................................................................................................................................................................................................................................................2111.0010000100
....................................................AACACGGAACCTG---ACCCCGGCATGGCT...............................................................................................................................................................................................................................................................................................2711.0010000100
................................................................G---ACCCCGGCATGGCTTTGAACTA.......................................................................................................................................................................................................................................................................................2311.0010100000
...............................................GATCAAACACGGAACCTG---ACCCCGGC.....................................................................................................................................................................................................................................................................................................2611.0011000000
.................................................TCAAACACGGAACCTG---AC...........................................................................................................................................................................................................................................................................................................1811.0010000010
............................................................................................TGCAAAGGGACGAGCACGATCGC---------CAGG.................................................................................................................................................................................................................................................2711.0011000000

Generated: 05/16/2015 at 11:56 PM