ID:

dvi_4785

 Coordinate:

scaffold_12875:833009-833159 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.0 0.6

Flybase annnotation

exon [dvir_GLEANR_6516:2]; CDS [Dvir\GJ21132-cds]; intron [Dvir\GJ21132-in]

Repeatable elements

NameClassFamilyStrand
CT-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TATGAGAGTGTCGTTGCCGAGGGCATTGAAGGCATGGAGCATCAAGAGAGGTGAGTGTTTGCCAGAGGGAGAGAGAGAGAGAGAGAGAGAGGGAGAGTGAGGAGGTAAGGAACTTAAAGAGAGTAAGATTGAGGCAGAGGAAGAAAGAGTGAAAAAGAGACTGAGAGAGTGAAAGAAAGTGGGAGAGTGAAAGAGAGAGAGAGTGAAAGAGAGAGAGATTGCTAAAGGAGACAGCTCCCAATTCAAGTAAA
****************************************************************************************************************************************************...........(((.....)))......................*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 M027
male body		 SRR060664
9_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 M061
embryo
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060679
140x9_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
..................GAGGGCATTGAAGGCATGGAGC................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GTGAAAAAGAGACTGAGA..................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............GTTGCCGAGGGCATTGAAGGCAT........................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................GGAAGAAAGAGTGAAAAAGA............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AGGCATGGAGCATCAAGAGAGA........................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TTGCCGAGGGCATTGAAGGCATG....................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..TGAGAGTGTCGTTGCCGAGGGC................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....GAGTGTCGTTGCCGAGGGC................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................GAAGGCATGGAGCATCAAGAGAGATA...................................................................................................................................................................................................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.ATGAGAGTGTCGTTGCCGAGGG.................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........TCGTTGCCGAAGGCATTGAAGGCA......................................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............TGCCGAGGGCATTGAAGG........................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAGAGAGAGAGATTGCTAAAGGAGACA.................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................GGCATTGAAGGAATGGAGC................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGAAGGCATGGAGCATCAAGAGA.......................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAGAAAGTGGGAGAGTGAAA........................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...GAGAGTGTCGTTGCCGAGGGCATT................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................ATTGAAGGCATGGAGCAT................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GCCGAGGGCATTGAAGGCATGGA..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GTGTCGTTGCCGAGGGCATTGA.............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................ATTGAAGGCATGGAGCATCAAGA............................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAAGGTTGAGCCAGATGAAGA........................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................ATTGAGGAAAAGGAAGAAAG........................................................................................................ 20 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGAGGGTAAGATTGATG..................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAGCGATTGCTGAAGGAGGC................... 20 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AGAGGAAGAAGGACTGAA.................................................................................................. 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................GAGAGAGAGAGGGAGAGTGAG...................................................................................................................................................... 21 0 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................AACGTAAGGAGAGGAAGAT.......................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GAGTGAAATAGAGCCTGAAA..................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................GAGTGAAATAGAGCCTGAA...................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................GAGAAAGAGAGAGAGAGTGAAAGAGA....................................... 26 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATACTCTCACAGCAACGGCTCCCGTAACTTCCGTACCTCGTAGTTCTCTCCACTCACAAACGGTCTCCCTCTCTCTCTCTCTCTCTCTCTCCCTCTCACTCCTCCATTCCTTGAATTTCTCTCATTCTAACTCCGTCTCCTTCTTTCTCACTTTTTCTCTGACTCTCTCACTTTCTTTCACCCTCTCACTTTCTCTCTCTCTCACTTTCTCTCTCTCTAACGATTTCCTCTGTCGAGGGTTAAGTTCATTT
***********************************************************...........(((.....)))......................**************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 V053
head
 SRR060664
9_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR1106730
embryo_16-30h
..................................................................................................................................................................................................................................CCTCTGTCGAGGATTAAGTC..... 20 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................CCTCTGTCGAGGATTAAGTCG.... 21 3 5 0.20 1 0 1 0 0 0 0
................................................................................................................................................TTCTCTCTTTTTTTCTGACT....................................................................................... 20 2 18 0.11 2 0 0 0 1 1 0
..............................................................................................................................................................................................................GTCTCTCTATCTATCGATTTCC....................... 22 3 12 0.08 1 0 0 1 0 0 0
..............................................................................................................................................................................................ATCTCTCTCTCTCACTTTCTCT....................................... 22 1 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:832959-833209 - dvi_4785 TATG------------------AG--------------AGTGTCGTTGCCGAGGGCATTGAAGGCATGGAGCATCAAGAGA------------G----G-----------------------------TGAGT----------------GT--TTGCCAGAGGGAGAGAGAGAGAGAGAGAGAGAGGGAGAGTGAGG--------AGGTAAGGAACTTAAAGAGA----------GTAAGATTGAGGCAGA--GGAAGAAA--------------------------GAG-------TGAAAAAGAGACT---GAG------------------------------------AG--------AGTGA--AAGAA--AGTGGGA------------------GAGTGA----A----------------AGAGAGA----GAGA--GTGAA--------------AG------------AGAGAGAG--------------------AT--------TGCTAAAGGAGAC----AGCTCCCAA--TT-----------------CAAGTAAA
droMoj3 scaffold_6510:727-941 + AGAG------------------AG--------------A------------------------------------------AGGGAT-----GACAGT----GACAACGAGAGCGCCGG-------------AGAAAGAGAGAGA----GA--TAGAGAGAGAGAGAGAGAGATAGAGAGACAGAGAGAGAGAAAGA--------GAGATAGAGAGAAAGAGATA----------GAGAGAGAGA------------------------------------------GAG-------ATAAAGAGAGAGA---GAG------------------------------------AGA----G--AAA----GAGATAG--AGAGA------------------GAGAGATAG--------------------AGAGAG------AGAGAGAT--------AGAGAGAG------------AGAAAGAAAG---------------------------------------AC----A-----------------------------GACCGCAA
droGri2 scaffold_14853:5124550-5124770 - ATGG------------------C-----------------------------------------------ACAAC-----------------GAGAGAG--------------------TGAGAGAGCTGAG--AGA--GAGAGAGA--GAGA--GAG--A----------------GAGAGAGAGAGAGAGAGA----------GAG--------------------AGAGA----------------GAGAG------AG------------------AGA--GAGA-GAG----AGAGAGA---------GAG------AGAGAGAGAGAGAGAGAGAGAGAGA----GAGA----GAGAGAGAGAGAGAGA----GA--------------------GAGAGAGA--GAGA----------------GAGA----GAGA--GAGAG--------------AG------------AGAGAGAG------A--------------G--------AGCGAGCTGAGAGAGCCCT---AAAGTGGC-----------------CCATTAAA
droWil2 scf2_1100000004945:662757-662935 - GAGT------------------TT--------------GGCTACTC-------------------------------CAGCA-----GCGAGAC----GAGA---------------------------------------TGGTTACGCAGA-TGGAAGGCGGAAGGTGAACGG--AT--------------------------------------------------------GCAAGACT----------AAGGCGTTGTCTACGAGACAGAGACAGAGA--GAGAG-------AGAGGGAGAGAGA---GAGAGAGAG----------AAA----GA------------------------------GGGA--------------------------GAGAGAGAGTGTGG--------------------TAGCTACT--GG--T----------------------------CGCAACTCTGGC--C----------------------------------------------------------------------------AA
dp5 4_group5:1769455-1769643 + AGAG------------------AG-------------------------------------------------------------------AGA----GA-------------------------------------------------GT--GAGAGAGAGTGAGAGAGAGAGAGAGTGAGAGAGAGAGAGAGTGA--------GAGAGAGAGAGTAAGAGT------------------------------GAGAGAGAGAGTAAG--------------AG---------------AGAGAGAGTAA---GA----------------------GAGAGAGAGA------GA----G--AG--------------AGAGT--GAGAGAGAGAGTGAGAGTGAGAGA------------------------------------------GAGTGAGAGAGAGAG--A---------GGAGTGAG--------------------AG--AGAGAAA-------GAGAA----------------------------------------AG
droPer2 scaffold_5:6179168-6179368 + TGAG------------------AG--------------CATGAGAGA----------------------------G---------------AGA----GAGAG----AGAGAG------AGAGT----AGAG--AGA----GAGAGAGAGAGA--GAG--A----------------GAGAGAGA----GA----GA--------GAG--A--------GAGAG----AGAGA------------------------GAGAG--AG--------------AGAG--AGAG---AGAGA-CGAGA------TGAGAG------AGAGAGAGA----------------------------------------GAGAGAGAGAGAGAGA--GAGAGAGAGAGAGAGTGA----A----------------AGAGTGA----GAGG------G--------------AGAGAGTGAGATAGATATATAGAGAG-------------------------------------AT----------------------------------------AG
droAna3 scaffold_8722:7245-7425 - TCAAAAGTGGTAATTGGT---GCT--------------ATGGAGAC---------------------------------------------AGA----GA-----------------------------------------GAAA----------GAGAGACAGAGAGACAGAGAGACAAAGAGTCAGAGAGACAGA--------GAGACAGAGAGACAGAGA------------------------GACA--GAG--------------------------AGACAGAG-------AGACAGAGAGACA---GAG------------------------------------AC--------AGAGACAGAGACA----GAGA------------------CAGAGA----C----------------AGAGACA----GAGA--CAGAG------------------------------ACAGAGAC---------------------------------------------------------------------------------AG
droBip1 scf7180000396430:302116-302297 - AGAG------------------GG-------------------------------------------------------------------AGA----AAGTG----------------AGAGCGGAGAAGG----A--GCGAGAACGGGAAA--GGG--A----------------AAAGGAAA----------AAGATCGGCAAAG--------------------AGAGC----------------GT--G------AA------------------AAGCAGCGGG-------AAAGAGAGCGTGA---AATAGAGAA----------ACA----AAGAGAAAGGGAACGT----G--AAGTGGAAAAACAGA------------------------GAGAAAGAGAACGG--------------------GAACGAGA--AC--G------------------------------GGAACGGGAG--C----------------------------------------------------------------------------GG
droKik1 scf7180000302485:26573-26780 - GAGA----------GCGTGAG-AGCGCGAGAGGTAAAGAGGG-------------------------------------------------AGA----CA--------GAGAGTGAGGGAC---------AG--AGA--GAGAGAGA--GAGA--CAG--A----------------GAGA--------------CAGACAGACAGAG--A--------------GAGACAGAGA----------------------GAGAG------------------AGA-------GAGAGAGAGAGAGA---------GAG------AGAGAGAGAGA----GAGAGAGAGAGAGAGAGA----GAGAGAGAGAGAGAGAGA------------------------GAGAGAGA--GAGA--------------------GAGAGAGA--GA--G----------------------------AGAGAGAGAGAG--A----------------------------------------------------------------------------GA
droFic1 scf7180000452868:413-591 - GAAG------------------GA-------------------------------------------------------------------AGA----AA-------------------------------------------------GA--AAGAAAGGAAGGAAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGA--------AAGAAAGCAAGGAAGGAAGA----------GAGAGAGAGAAAGAA-------------------------------------------------AGAAAGAAAGA---AA----------------------GAAAGAAAGA------AG----G--AA--------------GGAAG------------------GAAAGA----A----------------GGAAAGAA------AGAAAGAAAGAAAGAAAGAAAGAA------------AGAAAGAAAAAT--A----------------------------------------------------------------------------GA
droEle1 scf7180000491047:1147644-1147818 - GCAG------------------CG-------------------------------------------------------------------AAA----GAGA---------------------------------------AGGCTG--TG--TTGAAAGGAGGAAAGAGATAGATAGAGAGAGAGAGAGAGAGA------------------------------------------------------------------------------------------GAGAG-------AGAGAGAGAGAGA---GAGAGAGAG----------AGA----GAGAGAGAGAGAGAGA----G--AGAAGGGAAAAC----------------------------------------------------------------------------------------------------------------------------------------CC------CGAGACA--AAGGACACTTCTCAGTGGGCCAGAAGCAGAGAGATGTTCCTAAA
droRho1 scf7180000776762:139181-139344 + TGCG------------------AG-------------------------------------------------------------------TGG----GG-------------------------------------------------GG--AAGAGCGAGGGAGAGAGTGAGAGAGACG--------------------------------------------------------------------------------------------------------GAGAG-------CAAAAGAGCGAGA---GAGAGGGAA----------AAA----GAGA----------G--------A--------------------------------------GAGAAAGAGAGTGG--------------------GAGTGTTT--GA--G------------------------------AGAATGAGAG--ACGAGTAAAAAGATGTTGCC------TGAAATGAAAAAGATCTTTCTCAC---------------------TTCCTTAA
droBia1 scf7180000299393:9013-9201 - CAAG------------------AG-------------------------------------------------------------------AGA----GA-------------------------------------------------GA--CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA--------GAGAGAGAGAGAGAGAGAGA----------GAGAGAGAGA------------------------------------------GAG-------AGAGAGAGAGAGA---GAG----------------------AGAGAGAGA------------------------GAGAG--AGAGA------------------GAGAGA----G----------------AGAGAGAG------AGAGAGAGAGAGAGAGAGAAGGAA------------AGAGAGAG--------------------AT--------AGAGAAAGGAGAG----------------------------------------AG
droTak1 scf7180000415873:386377-386514 - GATG------------------TG-------------------------------------------------------------------AGA----GA-------------------------------------------------GA--GACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGT------------------------------------------------------------------------------------------------------------------A---GAGAGAGAG----------AG----------------------------AGAGAGTGAGTTAG--------------------------------CAAGTGGGGGTGGGGGAGAAAGAGGGA--------------G--------------------------------ACAGCGTGAGAA---------G--CG--AGGGTTA-CGAAA----------------------------------------------GG
droEug1 scf7180000408176:678739-678920 - GGTG------------------AA-------------------------------------------------------------------AGT----TT-------------------------------------------------TT--GGGAAAGACGGAAAGATATAGATAGAGAAAGATAGAGAGAGAGA--------GAGTGGGAAAAAGAAAAGGA----------TTGACATGGAAGTAGT--GACAGATATAGTTAA--------------AG---------------ATACAGTTAAA---GA------------------------------------------------TATA--GAAAT--AGATATAGACA--------------GAGAAAGA--TAGA--------------------------GA--GTGAA--------------AG----------ATAGAGATAGAGAT-------------------------------------AG----------------------------------------AG
dm3 chrUextra:12338028-12338213 - GAAA----------GGAT--------------------------------------------------------------------------GATAGA----G----------------AAAGAGAAAAGAG--AAA----GAGAAAGAGAAA--GAG--A----------------AAGAGAAA----------GAGAAAGAGAAAG--------------------AGAAA----------------GAGAA------AG------------------AGA--AAGAG-------AAAGAGA------ATAGAG------AAAGAGAAAGA----GAAAGAGAAAGAGAAAGA----GAAAGAGAAAGAGAAA--------------------------GAGAAAGAGAAAGA--------------------GAAAGAGA--AA--G----------------------------AGAAAGAGAAAG--A----------------------------------------------------------------------------GA
droSim2 2r:6071852-6071971 - GCCA----------G-------AG-------------------------------------------------------------------AGA----GA-------------------------------------------------GA--GAGAGCGA----------------AAGCGAGA----GAGAGAGA--------G----------------------------------------------------------------------------AGAGAGAG-------AGAGAGAGAGAGA---GAGAGAGAG----------AGA----GAGA----------------------------GAGAGAGAGAGAGAGA--------------------------GA--------------------GAAAGAGC--GA--G----------------------------AGTGAAAGAGCG--C----------------------------------------------------------------------------TA
droSec2 scaffold_15:1287870-1288012 - AAAT------------------AG-------------------------------------------------------------------AGA----GA-------------------------------------------------GA--GAGTGAGAGAGATAGAGAAAGAGAGAGTGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------GA---GAG------------------------------------AG--------TGAGA--GAGAT--AGAGAGA------------------TAGAGA----A----------------AGAGAGA----TAGA--GAGAG----------------------------------AGAGAGAGAG---------G--CG--CAAGCAA-TAAAT-----GGGATTATCTTT-----------------------CAAACAAT
droYak3 X:16724227-16724402 - GAGA----------G-------AG-------------------------------------------------------------------ATG----GAGCG----------------AT---------AG--AGA--GAGATGGA--GAG--------A------------GATGGCGA--------------GAGATGGAGAGAG--A--------------TGGCGAGAGA----------------------TGGCG------------------AGA-------GATTGAGAGAGATG---------GAG------AGAGATGGA----GAGAGATGGAGAG----AGATGGAGAGAGATGGCGAGAGATT------------------------GAGAGAGA--TGGG--------------------GAGAGAGA--GA--G----------------------------AGAGATAGAGAG--T----------------------------------------------------------------------------GA
droEre2 scaffold_4784:18912344-18912537 + GGAG------------------GC--------------AGGGAGACA----------------------------GAGAGAA---------------------------------------------GGGAGACAAAGAGAGAGG----GAGA--CAGAGA------------GAGGGAGA--------------CAGAGAGAGAGAG--A--------------GAGAGAGAGA----------------------GAGAG------------------AGA-------GAGAGAGAGAGAGA---------GAG------AGAGAGAGA----GAGAGAGAGAGAG----AGAGCGAGAGAGAGAGTGAGAAAGA------------------------GAGAGAGAG--------------------AGAGAGAAAGAGA--AA--G----------------------------AGAAAGAGAAAG--A----------------------------------------------------------------------------GA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TATG------------------AG--------------AGTGTCGTTGCCGAGGGCATTGAAGGCATGGAGCATCAAGAGA------------G----G-----------------------------TGAGT----------------GT--TTGCCAGAGGGAGAGAGAGAGAGAGAGAGAGAGGGAGAGTGAGG--------AGGTAAGGAACTTAAAGAGA----------GTAAGATTGAGGCAGA--GGAAGAAA--------------------------GAG-------TGAAAAAGAGACT---GAG------------------------------------AG--------AGTGA--AAGAA--AGTGGGA------------------GAGTGA----A----------------AGAGAGA----GAGA--GTGAA--------------AG------------AGAGAGAG--------------------AT--------TGCTAAAGGAGAC----AGCTCCCAA--TT-----------------CAAGTAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................GAGGGCATTGAAGGCATGGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................G-------TGAAAAAGAGACT---GAG------------------------------------A..........................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
............................................GTTGCCGAGGGCATTGAAGGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................GGAAGAAA--------------------------GAG-------TGAAAAAGA.........................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................AGGCATGGAGCATCAAGAGA------------G----A-----------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................TTGCCGAGGGCATTGAAGGCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..TG------------------AG--------------AGTGTCGTTGCCGAGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000001000000000000000000000000000000000000000000000000000000
.......................G--------------AGTGTCGTTGCCGAGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
.ATG------------------AG--------------AGTGTCGTTGCCGAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
..............................................TGCCGAGGGCATTGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------AG------------AGAGAGAG--------------------AT--------TGCTAAAGGAGAC----A.....................................2711.001000000000000000000000000000000000000000000000000000000000000010
..........................................................TGAAGGCATGGAGCATCAAGAGA------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AAGAA--AGTGGGA------------------GAGTGA----A----------------A..............................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
...G------------------AG--------------AGTGTCGTTGCCGAGGGCATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
........................................................ATTGAAGGCATGGAGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...............................................GCCGAGGGCATTGAAGGCATGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................GTGTCGTTGCCGAGGGCATTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
........................................................ATTGAAGGCATGGAGCATCAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................GAGAGAGAGAGGGAGAGTGAG.......................................................................................................................................................................................................................................................................................................................................................................................21170.061000000000000000000000000000100000000000000000000000000000000000
droMoj3
AGAG------------------AG--------------A------------------------------------------AGGGAT-----GACAGT----GACAACGAGAGCGCCGG-------------AGAAAGAGAGAGA----GA--TAGAGAGAGAGAGAGAGAGATAGAGAGACAGAGAGAGAGAAAGA--------GAGATAGAGAGAAAGAGATA----------GAGAGAGAGA------------------------------------------GAG-------ATAAAGAGAGAGA---GAG------------------------------------AGA----G--AAA----GAGATAG--AGAGA------------------GAGAGATAG--------------------AGAGAG------AGAGAGAT--------AGAGAGAG------------AGAAAGAAAG---------------------------------------AC----A-----------------------------GACCGCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................GATAG--------------------AGAGAG------AGAGAGA..........................................................................................................................18200.102200000
................................................................................................................................................................................................................................................................................................................GAGAGA---GAG------------------------------------AGA----G--AAA----GAGA......................................................................................................................................................................................................20200.102000002
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAT--------AGAGAGAG------------AGAAAG.......................................................................................18200.051100000
.............................................................................................................................................................GAGAGAGAGAGAGAGATA............................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
..........................................................................................................................................................................................................................................................................................................TAAAGAGAGAGA---GAG------------------------------------AGA----....................................................................................................................................................................................................................18200.051000001
droGri2
ATGG------------------C-----------------------------------------------ACAAC-----------------GAGAGAG--------------------TGAGAGAGCTGAG--AGA--GAGAGAGA--GAGA--GAG--A----------------GAGAGAGAGAGAGAGAGA----------GAG--------------------AGAGA----------------GAGAG------AG------------------AGA--GAGA-GAG----AGAGAGA---------GAG------AGAGAGAGAGAGAGAGAGAGAGAGA----GAGA----GAGAGAGAGAGAGAGA----GA--------------------GAGAGAGA--GAGA----------------GAGA----GAGA--GAGAG--------------AG------------AGAGAGAG------A--------------G--------AGCGAGCTGAGAGAGCCCT---AAAGTGGC-----------------CCATTAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GAGT------------------TT--------------GGCTACTC-------------------------------CAGCA-----GCGAGAC----GAGA---------------------------------------TGGTTACGCAGA-TGGAAGGCGGAAGGTGAACGG--AT--------------------------------------------------------GCAAGACT----------AAGGCGTTGTCTACGAGACAGAGACAGAGA--GAGAG-------AGAGGGAGAGAGA---GAGAGAGAG----------AAA----GA------------------------------GGGA--------------------------GAGAGAGAGTGTGG--------------------TAGCTACT--GG--T----------------------------CGCAACTCTGGC--C----------------------------------------------------------------------------AASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................GACAGAGA--GAGAG-------AGAGGGA...........................................................................................................................................................................................................................................................................20200.15300300
...............................................................................................................................................................................................................................................................................................................................GAG----------AAA----GA------------------------------GGGA--------------------------GAGAGA....................................................................................................................................................................18200.05101000
.................................................................................................................................................................................................................................................................................................G-------AGAGGGAGAGAGA---GAGAGAGA..........................................................................................................................................................................................................................................................22200.05100001
.....................................................................................................................................................................................................................................................................................CAGAGA--GAGAG-------AGAGGGAGA.........................................................................................................................................................................................................................................................................20200.05100010
..............................................................................................................................................................................................................................................................................................AGAG-------AGAGGGAGAGAGA---GAGAGAGA..........................................................................................................................................................................................................................................................25200.05100001
.............................................................................................................................................................................................................................................................................GACAGAGACAGAGA--GAGAG-------AG................................................................................................................................................................................................................................................................................21200.05100100
dp5
AGAG------------------AG-------------------------------------------------------------------AGA----GA-------------------------------------------------GT--GAGAGAGAGTGAGAGAGAGAGAGAGTGAGAGAGAGAGAGAGTGA--------GAGAGAGAGAGTAAGAGT------------------------------GAGAGAGAGAGTAAG--------------AG---------------AGAGAGAGTAA---GA----------------------GAGAGAGAGA------GA----G--AG--------------AGAGT--GAGAGAGAGAGTGAGAGTGAGAGA------------------------------------------GAGTGAGAGAGAGAG--A---------GGAGTGAG--------------------AG--AGAGAAA-------GAGAA----------------------------------------AGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................AGAGTAAGAGT------------------------------GAGAGAGAGAG...................................................................................................................................................................................................................................................................................................................2220.5010000100000
.........................................................................................................................................................................................................................................................................................................................................................GA------GA----G--AG--------------AGAGT--GAGAGAGAGA................................................................................................................................................................................22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAGA------------------------------------------GAGTGAGAGAGAGA..........................................................................................................18200.0510000100000
.......................................................................................................................................................................GAGAGAGAGAGTGAGAGAGAGA..............................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.......................................................................................................................................................................................GAGAGAGAGAGTGA--------GAGAGAGA......................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
....................................................................................................................................................................AGAGAGAGAGAGAGTGAGAGAGAGA..............................................................................................................................................................................................................................................................................................................................................................................................25200.0510000001000
...........................................................................................................................................................GAGAGAGTGAGAGAGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100000
....................................................................................................................................................................................AGAGAGAGAGAGAGTGA--------GAGAGAGA......................................................................................................................................................................................................................................................................................................................................................................25200.0510000001000
..................................................................................................................................................................................................................................................................................................................................................AGAGAGAGA------GA----G--AG--------------AGAGT--GAGAGAGA..................................................................................................................................................................................27200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................AGAGA------GA----G--AG--------------AGAGT--GAGAGAGAGA................................................................................................................................................................................25200.0510000001000
droPer2
TGAG------------------AG--------------CATGAGAGA----------------------------G---------------AGA----GAGAG----AGAGAG------AGAGT----AGAG--AGA----GAGAGAGAGAGA--GAG--A----------------GAGAGAGA----GA----GA--------GAG--A--------GAGAG----AGAGA------------------------GAGAG--AG--------------AGAG--AGAG---AGAGA-CGAGA------TGAGAG------AGAGAGAGA----------------------------------------GAGAGAGAGAGAGAGA--GAGAGAGAGAGAGAGTGA----A----------------AGAGTGA----GAGG------G--------------AGAGAGTGAGATAGATATATAGAGAG-------------------------------------AT----------------------------------------AGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGA--GAGAGAGAGAGAGAGTG.....................................................................................................................................................................25200.051000001
.........................................................................................................................................................................................................................................................................................................................GAG------AGAGAGAGA----------------------------------------GAGAGAGAGAGA............................................................................................................................................................................................24200.051000001
droAna3
TCAAAAGTGGTAATTGGT---GCT--------------ATGGAGAC---------------------------------------------AGA----GA-----------------------------------------GAAA----------GAGAGACAGAGAGACAGAGAGACAAAGAGTCAGAGAGACAGA--------GAGACAGAGAGACAGAGA------------------------GACA--GAG--------------------------AGACAGAG-------AGACAGAGAGACA---GAG------------------------------------AC--------AGAGACAGAGACA----GAGA------------------CAGAGA----C----------------AGAGACA----GAGA--CAGAG------------------------------ACAGAGAC---------------------------------------------------------------------------------AGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........TAATTGGT---GCT--------------ATGGAGAC---------------------------------------------AGA----GA-----------------------------------------GAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2720.501100000
...AAAGTGGTAATTGGT---GCT--------------ATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.132101000
TCAAAAGTGGTAATTGGT---GCC--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.071010000
.............................................................................................................................................................................................................................................................................................................AGAGAGACA---GAG------------------------------------AC--------AGAGACAGAGA......................................................................................................................................................................................................25200.051100000
droBip1
AGAG------------------GG-------------------------------------------------------------------AGA----AAGTG----------------AGAGCGGAGAAGG----A--GCGAGAACGGGAAA--GGG--A----------------AAAGGAAA----------AAGATCGGCAAAG--------------------AGAGC----------------GT--G------AA------------------AAGCAGCGGG-------AAAGAGAGCGTGA---AATAGAGAA----------ACA----AAGAGAAAGGGAACGT----G--AAGTGGAAAAACAGA------------------------GAGAAAGAGAACGG--------------------GAACGAGA--AC--G------------------------------GGAACGGGAG--C----------------------------------------------------------------------------GGSizeHit CountTotal NormTotal
No Reads
droKik1
GAGA----------GCGTGAG-AGCGCGAGAGGTAAAGAGGG-------------------------------------------------AGA----CA--------GAGAGTGAGGGAC---------AG--AGA--GAGAGAGA--GAGA--CAG--A----------------GAGA--------------CAGACAGACAGAG--A--------------GAGACAGAGA----------------------GAGAG------------------AGA-------GAGAGAGAGAGAGA---------GAG------AGAGAGAGAGA----GAGAGAGAGAGAGAGAGA----GAGAGAGAGAGAGAGAGA------------------------GAGAGAGA--GAGA--------------------GAGAGAGA--GA--G----------------------------AGAGAGAGAGAG--A----------------------------------------------------------------------------GASizeHit CountTotal NormTotal
No Reads
droFic1
GAAG------------------GA-------------------------------------------------------------------AGA----AA-------------------------------------------------GA--AAGAAAGGAAGGAAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGA--------AAGAAAGCAAGGAAGGAAGA----------GAGAGAGAGAAAGAA-------------------------------------------------AGAAAGAAAGA---AA----------------------GAAAGAAAGA------AG----G--AA--------------GGAAG------------------GAAAGA----A----------------GGAAAGAA------AGAAAGAAAGAAAGAAAGAAAGAA------------AGAAAGAAAAAT--A----------------------------------------------------------------------------GASizeHit CountTotal NormTotal
No Reads
droEle1
GCAG------------------CG-------------------------------------------------------------------AAA----GAGA---------------------------------------AGGCTG--TG--TTGAAAGGAGGAAAGAGATAGATAGAGAGAGAGAGAGAGAGA------------------------------------------------------------------------------------------GAGAG-------AGAGAGAGAGAGA---GAGAGAGAG----------AGA----GAGAGAGAGAGAGAGA----G--AGAAGGGAAAAC----------------------------------------------------------------------------------------------------------------------------------------CC------CGAGACA--AAGGACACTTCTCAGTGGGCCAGAAGCAGAGAGATGTTCCTAAASizeHit CountTotal NormTotal
No Reads
droRho1
TGCG------------------AG-------------------------------------------------------------------TGG----GG-------------------------------------------------GG--AAGAGCGAGGGAGAGAGTGAGAGAGACG--------------------------------------------------------------------------------------------------------GAGAG-------CAAAAGAGCGAGA---GAGAGGGAA----------AAA----GAGA----------G--------A--------------------------------------GAGAAAGAGAGTGG--------------------GAGTGTTT--GA--G------------------------------AGAATGAGAG--ACGAGTAAAAAGATGTTGCC------TGAAATGAAAAAGATCTTTCTCAC---------------------TTCCTTAASizeHit CountTotal NormTotal
No Reads
droBia1
CAAG------------------AG-------------------------------------------------------------------AGA----GA-------------------------------------------------GA--CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA--------GAGAGAGAGAGAGAGAGAGA----------GAGAGAGAGA------------------------------------------GAG-------AGAGAGAGAGAGA---GAG----------------------AGAGAGAGA------------------------GAGAG--AGAGA------------------GAGAGA----G----------------AGAGAGAG------AGAGAGAGAGAGAGAGAGAAGGAA------------AGAGAGAG--------------------AT--------AGAGAAAGGAGAG----------------------------------------AGSizeHit CountTotal NormTotal
No Reads
droTak1
GATG------------------TG-------------------------------------------------------------------AGA----GA-------------------------------------------------GA--GACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGT------------------------------------------------------------------------------------------------------------------A---GAGAGAGAG----------AG----------------------------AGAGAGTGAGTTAG--------------------------------CAAGTGGGGGTGGGGGAGAAAGAGGGA--------------G--------------------------------ACAGCGTGAGAA---------G--CG--AGGGTTA-CGAAA----------------------------------------------GGSizeHit CountTotal NormTotal
No Reads
droEug1
GGTG------------------AA-------------------------------------------------------------------AGT----TT-------------------------------------------------TT--GGGAAAGACGGAAAGATATAGATAGAGAAAGATAGAGAGAGAGA--------GAGTGGGAAAAAGAAAAGGA----------TTGACATGGAAGTAGT--GACAGATATAGTTAA--------------AG---------------ATACAGTTAAA---GA------------------------------------------------TATA--GAAAT--AGATATAGACA--------------GAGAAAGA--TAGA--------------------------GA--GTGAA--------------AG----------ATAGAGATAGAGAT-------------------------------------AG----------------------------------------AGSizeHit CountTotal NormTotal
No Reads
dm3
GAAA----------GGAT--------------------------------------------------------------------------GATAGA----G----------------AAAGAGAAAAGAG--AAA----GAGAAAGAGAAA--GAG--A----------------AAGAGAAA----------GAGAAAGAGAAAG--------------------AGAAA----------------GAGAA------AG------------------AGA--AAGAG-------AAAGAGA------ATAGAG------AAAGAGAAAGA----GAAAGAGAAAGAGAAAGA----GAAAGAGAAAGAGAAA--------------------------GAGAAAGAGAAAGA--------------------GAAAGAGA--AA--G----------------------------AGAAAGAGAAAG--A----------------------------------------------------------------------------GASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................TAGA----G----------------AAAGAGAAAAGAG--AAA----..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................GAGAAAAGAG--AAA----GAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.............................................................................................ATAGA----G----------------AAAGAGAAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GA------ATAGAG------AAAGAGAAAGA----TG........................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................GA----G----------------AAAGAGAAAAGAG--AAT----CC............................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................AGAAAGAGAAA--GAG--A----------------AAGAGA....................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCCA----------G-------AG-------------------------------------------------------------------AGA----GA-------------------------------------------------GA--GAGAGCGA----------------AAGCGAGA----GAGAGAGA--------G----------------------------------------------------------------------------AGAGAGAG-------AGAGAGAGAGAGA---GAGAGAGAG----------AGA----GAGA----------------------------GAGAGAGAGAGAGAGA--------------------------GA--------------------GAAAGAGC--GA--G----------------------------AGTGAAAGAGCG--C----------------------------------------------------------------------------TASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................GAGA----GAGAGAGA--------G----------------------------------------------------------------------------AGA..............................................................................................................................................................................................................................................................................................16200.10200000000002000000
...........................................................................................................................................................................................................................................................................................................................GAGAGAG----------AGA----GAGA----------------------------GAG.....................................................................................................................................................................................................17200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................GAGA----------------------------GAGAGAGAGAGAG...........................................................................................................................................................................................17200.05100000000001000000
................................................................................................................................................................................................................................................................................................................GAGAGA---GAGAGAGAG----------AG.............................................................................................................................................................................................................................................17200.05100000000001000000
..................................................................................................GA-------------------------------------------------GA--GAGAGCGA----------------AAG.......................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................GA----------------------------GAGAGAGAGAGAGAG.........................................................................................................................................................................................17200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGA--------------------------GA--------------------G.......................................................................................................................................17200.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................GAGAG----------AGA----GAGA----------------------------GAGAG...................................................................................................................................................................................................17200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................GAGA---GAGAGAGAG----------AGA----G.......................................................................................................................................................................................................................................17200.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................................GA----GAGA----------------------------GAGAGAGAGAG.............................................................................................................................................................................................17200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................GAGAGAGA---GAGAGAGAG----------...............................................................................................................................................................................................................................................17200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................GAGAGAGAG----------AGA----GAGA----------------------------G.......................................................................................................................................................................................................17200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................GAG----------AGA----GAGA----------------------------GAGAGAG.................................................................................................................................................................................................17200.05100000000001000000
....................................................................................................................................................................................................................................................................................................................GA---GAGAGAGAG----------AGA----GAG.....................................................................................................................................................................................................................................17200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGAGAGA--------------------------G.............................................................................................................................................................17200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................G----------AGA----GAGA----------------------------GAGAGAGAG...............................................................................................................................................................................................17200.05100000000001000000
droSec2
AAAT------------------AG-------------------------------------------------------------------AGA----GA-------------------------------------------------GA--GAGTGAGAGAGATAGAGAAAGAGAGAGTGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------GA---GAG------------------------------------AG--------TGAGA--GAGAT--AGAGAGA------------------TAGAGA----A----------------AGAGAGA----TAGA--GAGAG----------------------------------AGAGAGAGAG---------G--CG--CAAGCAA-TAAAT-----GGGATTATCTTT-----------------------CAAACAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................GTGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------GA---GAG------------------------------------AG--------TGA..............................................................................................................................................................................................................2220.5010010
..............................................................................................................................................................................................................................................................................................................................................................................A--GAGAT--AGAGAGA------------------TAGAGA----................................................................................................................................................................1940.2510100
...........................................................................................................................................................................................................................................................................................................................................................................................................................A----------------AGAGAGA----TAGA--GAGAG----------------------------------A......................................................................................1880.1310010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGA----TAGA--GAGAG----------------------------------AGAGAG.................................................................................20160.0610100
...............................................................................................................................................................................GAGAGTGAGAGAGAGA---------------------------------------------------------------------------------------------------------------------GA---..................................................................................................................................................................................................................................................................18200.0511000
.......................................................................................................................................................................................GAGAGAGA---------------------------------------------------------------------------------------------------------------------GA---GAG------------------------------------AG--------TGAGA--..........................................................................................................................................................................................................20200.0510010
droYak3
GAGA----------G-------AG-------------------------------------------------------------------ATG----GAGCG----------------AT---------AG--AGA--GAGATGGA--GAG--------A------------GATGGCGA--------------GAGATGGAGAGAG--A--------------TGGCGAGAGA----------------------TGGCG------------------AGA-------GATTGAGAGAGATG---------GAG------AGAGATGGA----GAGAGATGGAGAG----AGATGGAGAGAGATGGCGAGAGATT------------------------GAGAGAGA--TGGG--------------------GAGAGAGA--GA--G----------------------------AGAGATAGAGAG--T----------------------------------------------------------------------------GASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GGAG------------------GC--------------AGGGAGACA----------------------------GAGAGAA---------------------------------------------GGGAGACAAAGAGAGAGG----GAGA--CAGAGA------------GAGGGAGA--------------CAGAGAGAGAGAG--A--------------GAGAGAGAGA----------------------GAGAG------------------AGA-------GAGAGAGAGAGAGA---------GAG------AGAGAGAGA----GAGAGAGAGAGAG----AGAGCGAGAGAGAGAGTGAGAAAGA------------------------GAGAGAGAG--------------------AGAGAGAAAGAGA--AA--G----------------------------AGAAAGAGAAAG--A----------------------------------------------------------------------------GASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGA------------------------GAGAGAGAG--------------------A............................................................................................................................................2020.5010000100
.....................................................................................................................................................................................................................................................................................................................................GAGAGA----GAGAGAGAGAGA................................................................................................................................................................................................................................18200.1020002000
.........................................................................................................................................................................................................................................................................................................................GAG------AGAGAGAGA----GAGAGA......................................................................................................................................................................................................................................18200.1020002000
.........................................................................................................................................................................................................................................................................................................................................GA----GAGAGAGAGAGAG----AGA........................................................................................................................................................................................................................18200.1020002000
...........................................................................................................................................................................................................................................................................................................................G------AGAGAGAGA----GAGAGAGA....................................................................................................................................................................................................................................18200.1020002000
..............................................................................................................................................................................................................................................................................................................GA---------GAG------AGAGAGAGA----GAGA........................................................................................................................................................................................................................................18200.1020002000
...................................................................................................................................................................................................................................................................................................................................GAGAGAGA----GAGAGAGAGA..................................................................................................................................................................................................................................18200.1020002000
.......................................................................................................................................................................................................................................................................................................................................GAGA----GAGAGAGAGAGAG----A..........................................................................................................................................................................................................................18200.1020002000
.....................................................................................................................................................................................................................................................................................................................................................GAGAGAG----AGAGCGAGAGA................................................................................................................................................................................................................18200.0510000010
...................................................................................................................................................................................................................................................................................................................................................................................GAAAGA------------------------GAGAGAGAG--------------------AGAGA........................................................................................................................................20200.0510000100
...................................................................................................................................................................................GA--------------CAGAGAGAGAGAG--A--------------GA........................................................................................................................................................................................................................................................................................................................................................18200.0510001000
.........................................................................................................................................................................................................................................................................................................................................GA----GAGAGAGAGAGAG----AGAGC......................................................................................................................................................................................................................20200.0510000010
..........................................................................................................................................................................................................................................................................................................................................................AG----AGAGCGAGAGAGAGAG...........................................................................................................................................................................................................18200.0510000010
........................................................................................................................................................................................................................................................................................................................................................................................A------------------------GAGAGAGAG--------------------AGAGAGAAAGA..................................................................................................................................21200.0510000100

Generated: 05/16/2015 at 10:12 PM