dvi_4749

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

CTTTATACGAGAAATATTCAACTCATTTATAATTCGTAAATAACTCATAAAAGAGTCACTCAAAAAAAAATATATATGAAAATTTTAGATATTAAATTATATTTACATAAGTTATATCAGATGTCAGACAATATATATGATATATAAGGAGATTTCAGGTAGTTTAAGTACTAAATCGATTAAAACGGTTTATAGGAAGTCTAGTGTGAACCCAACGGGCGTTACACATGCTACGTGACGGCGGTAAACGG ************************************************.....((.((((.......(((((((((.........(((((.((.(((((....))))).)))))))..........)).)))))))......)))))).........((((......))))...((.......))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060673 9_ovaries_total	SRR060682 9x140_0-2h_embryos_total	SRR060668 160x9_males_carcasses_total	M047 female body	SRR060684 140x9_0-2h_embryos_total	SRR1106729 mixed whole adult body	V053 head
.........................................................................................................................................................................................................................GGCGTTACACATGCTACGTGA.............	21	0	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................TTTATAGGAAGTCTAGTGTGAACCC......................................	25	0	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................TATGGGAAGACTAGGGTGAAC........................................	21	3	5	0.20	1	0	0	1	0	0	0	0
..............................................................................................................................................................................................TATGGGAAGACTAGGGTGAA.........................................	20	3	11	0.18	2	0	0	0	1	1	0	0
........................................................................................................................................................................................ACGGTCTATAGGAAG....................................................	15	1	18	0.06	1	0	0	0	0	0	1	0
..............................................................................................................................................GATAAGGAGATGTCAGGA...........................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:583653-583903 +	dvi_4749	GAAAT--A-------------TGC--TCTTTATAAGTTGA--GTA----AATATTAA-----GCA-----TTTATTGAGTATTTTCTCAGTGAGTTTTTTTTTATATATACTTTTAAA-------ATCTATAA---------------------TTTAATATA-AA----TGTATTCAATATAGTCTACAGTCTGTTATATA----TAC------------------------------------TATATATTCCTCTAAAGTCCATCAAATTCATG----ATTTAGCTA--------------ATTTTGCC---------------------------------------AAATATCCTTCAGATCACACTTGGGTTGCCCGCAATG--TGTACGATGCACTGCCGCCATTTGCC
droMoj3	scaffold_6496:3582060-3582222 -		TTATATAG------------------------ATTTT--------AGTCCATGG----TA---------------------------------------------------------------------------G------------------TTTTATATG-ATTATC----------ATTATAAACTTGTATATACA---------------------------------------------TATAT----------TGTATATTATTTCTA--------TTCT---TTATTCA----------------------TTTCA----------------------TTTC-ACTCTCCTTTCAGTCTACAAATGGGTTCAATCGTCGG--CGTATTCGTCGATACCGCCAAACGCC
droGri2	scaffold_15074:626458-626646 +		ATGAT--A-------------T-------TAATTAATTGC--GTA----AGTGG----TATTGCA-----TTACTGGGGTATTTT--AAATGAAATGTTTTTTGTATTTACATTTTAATATTCAA--------TGA------------------TTTATTATC-AACATG----------ATATTATAAAGT----------------------------------------TTATTTATATGCCTATATTA------------------------------------------------------------------------------------------------------ACCTATATAGATCACACGTAGTTA-------ATTTATATTTTGCAGCTAGCCGCATT--TGG
droWil2	scf2_1100000004510:1022073-1022169 -		CTTCG--A-------------G-------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTAGT-------------------TTCTTTCATT---TATTTTATC---------------------------------------G--TATATTCTAGATCACACATGGATTGCCCGCAATG--TCTATGATGCATTGCCGCCATTTGCC
dp5	3:5606941-5606997 -		C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAACACACCTGGGTGCACTCAACTC--CATACGCCGCACTGCCACCCTACGCT
droPer2	scaffold_2:5801563-5801619 -		C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAACACACCTGGGTGCACTCAACTC--CATACGCCGCACTGCCACCCTACGCT
droAna3	scaffold_13340:11654119-11654180 -		CCCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCTTTCAGAACACAATTGGCTTCACTTCAG-----CCACGGGGCCATTCCCCAGGCAGCC
droBip1	scf7180000395839:466599-466685 +		ACTTA--A------------------------CTAAC--------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTCTATTTT-------------------------------------------------TTTCGTCCTTTAGACTACGTTTGGATTAGCAGCAATG--TCTATGGAGGTCTGCCCGGTGGCGCC
droKik1	scf7180000302639:499979-500031 -		C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACTACCAATGGATCAGCAGCAATG--TCTACGGAGGCCTGCCAGGTGGCGCC
droFic1	scf7180000454066:430189-430258 -		TTGTT--C-------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATACTCCACAGACTACACCTGGATTAGCGCCAATG--TCTACGGACCCCTGCCGCCCGGAGCC
droEle1	scf7180000491006:69495-69737 +		GAAAATATCTTATATTTTTCATAATATCGTAAGGAATATA--ATA----AATGCAAA-----TCA-----CTTAT----AATTTTCTTGTTACG-------TTGTGG--------------------------TTACGTTTATAAATTGTCCATATTAACATA------------ACAATATGGTTGAAGAGGATATACATTTCTTTACCAAATTGAAAATTACTAATAAATTTATTAATATT---------------------------------------------------CACAC----------------------------------------------------TGCACTCCCGTAGACCACAGATGGATGCACTT---TA--GCCACGGCAGCGTGCCGCCGAATGCC
droRho1	scf7180000779957:51578-51679 -		ATTTGTAA------------------------CTTAT--------CGCCACTGA----CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTCCAAA---TATTC-------------------------------------------CATTCCCTTGCAGACTACACCTGGATTAGCACCAACG--TTTACGATGCCCTGCCAGCGGGAGCC
droBia1	scf7180000302292:1897753-1897809 +		C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACTACACCTGGATTAGCTCGAACG--TCTACGAAGGCCTGCCACCTGGCGCC
droTak1	scf7180000415762:291066-291301 +		AATAT--A-------------TGA--TTTTCAAAAATTTAATATA----AGTATAAGTTAGTAT---------------------------------ATTTGCCTAGGCATTTTAAGG-------CTCTAAAA---------------------TATCATTTTAAT----GGTATACACTAAAATTAAATGGCGTATATATT----TACC-----------------------------------CATATATTTATTTTATTTTTGCTAGTTTTATTGACCTTTTCTTTA--------------ATTTACTCAAATTTACTCCA----------------------TT---TCCCTTTTTGCAGCCTACAAGTGGGTGCAATCTTC----------------GGCCTACTCCTCCC
droEug1	scf7180000409672:3794185-3794269 +		CAAG----------------------------CTTAT--------CGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTG----------------------------------------------CCC-TCTCTCCTTGCAGACAACACCTGGGTGCACTCGTCTC--CTCACGCTCCCTTGCCCGCTTATGCG
dm3	chr2R:8838805-8838890 -		ATCAA--A------------------------CTTAT--------CGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTACTGCC------------------------------------------------TTTCTCCTTGCAGACAACACCTGGGTGCACTCGTCTC--CATACAGCCCCCTGCCCCCATACGCG
droSim2	2r:6068612-6068666 -		TTTTT--A-------------T-----------------------------------------------------------------------------------ATGTACTTTTGAA-------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAATATCATTAAGTGCATTT------------------CTGCAA---T--CTG
droSec2	scaffold_1:6354575-6354660 -		ATCAA--A------------------------CTTAT--------CGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTACTGCC------------------------------------------------TTTCTCCTTGCAGACAACACCTGGGTGCACTCGTCTC--CACACAGCCCCCTGCCCCCTTACGCG
droYak3	2R:8131432-8131624 +		TTTTTTAT------------------------A--TT--------AGCAAATGA----TACTGTAAACCCTTTAG----GT----------------TTCTCTGTATTTA-ATTCATATTTTCAA--------TTATTTTTATTAATTTTATATA----------------------------------------------------------------------------------------------------------------------------------------------------------TTCATACCTACCACATTTTTAAGCTTATAACTAAACCTTCCCCTCTTTCTTCCAGCCTACAAGTGGGTTCAGTCCTCGG--CCTACTCCTCCCTTCCCGAGGAGGCA
droEre2	scaffold_4845:16975729-16975837 +		TATTT--A-------------T-----------TATT--------TAT---------------------------TATATATTTTATTATATATATTTACTTTATTTATTTATTACAT-------ATTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAAAGAAAATAATTTT--GCATTAGGGAAATGTATTCAAAATAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GAAAT--A-------------TGC--TCTTTATAAGTTGA--GTA----AATATTAA-----GCA-----TTTATTGAGTATTTTCTCAGTGAGTTTTTTTTTATATATACTTTTAAA-------ATCTATAA---------------------TTTAATATA-AA----TGTATTCAATATAGTCTACAGTCTGTTATATA----TAC------------------------------------TATATATTCCTCTAAAGTCCATCAAATTCATG----ATTTAGCTA--------------ATTTTGCC---------------------------------------AAATATCCTTCAGATCACACTTGGGTTGCCCGCAATG--TGTACGATGCACTGCCGCCATTTGCC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................CACACTTGGGTTGCCCGCAATG--T.........................	23	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................AATG--TGTACGATGCACTGCCGCC.......	23	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CCCGCAATG--TGTACGATGCACT.............	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TTGGGTTGCCCGCAATG--TGTACGATG.................	26	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................GATCACACTTGGGTTGCCCGC................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................ATG--TGTACGATGCACTGCCGCC.......	22	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................CTTGGGTTGCCCGCAATG--TGTACG....................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCCCGCAATG--TGTACGATGCA...............	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGTACGATGCACTGCCGCCATTTG..	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................G--TGTACGATGCACTGCCGCC.......	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TTGGGTTGCCCGCAATG--TGTAC.....................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GTTGCCCGCAATG--TGTACGATGCACT.............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................CAATG--TGTACGATGCACTGCCGC........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CACACTTGGGTTGCCCGCAAT.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................AATG--TGTACGATGCACTGCCGCCATT....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................AATG--TGTACGATGCACTGCC..........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGGGTTGCCCGCAATG--TGTACG....................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TTGCCCGCAATG--TGTACGATG.................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GTTGCCCGCAATG--TGTACGATGCACTGC...........	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................AATG--TGTACGATGCACTGCCG.........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGGGTTGCCCGCAATG--TGTA......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................CAATG--TGTACGATGCACTGC...........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................GCAATG--TGTACGATGCACTGC...........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GGGTTGCCCGCAATG--TGTACGAT..................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................CGCAATG--TGTACGATGCACTGCCGCC.......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................AATG--TGTACGATGCACTGCCGCCATTTG..	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GATGCACTGCCGCCATTTGC.	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................G--TGTACGATGCACTGCCGC........	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................G--TGTACGATGCACTGCCGCCA......	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCCCGCAATG--TGTACGATG.................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CCCGCAATG--TGTACGATGC................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GGGTTGCCCGCAATG--TGTACGA...................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TA----TAC------------------------------------TATATATTCCTCTA.............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTATATAG------------------------ATTTT--------AGTCCATGG----TA---------------------------------------------------------------------------G------------------TTTTATATG-ATTATC----------ATTATAAACTTGTATATACA---------------------------------------------TATAT----------TGTATATTATTTCTA--------TTCT---TTATTCA----------------------TTTCA----------------------TTTC-ACTCTCCTTTCAGTCTACAAATGGGTTCAATCGTCGG--CGTATTCGTCGATACCGCCAAACGCC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................AAATGGGTTCAATCGTCGG--C.........................	20	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................AATGGGTTCAATCGTCGG--C.........................	19	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................CAATCGTCGG--CGTATTCGTC................	20	1	1.00	1	1	0	0	0	0	0

droGri2

ATGAT--A-------------T-------TAATTAATTGC--GTA----AGTGG----TATTGCA-----TTACTGGGGTATTTT--AAATGAAATGTTTTTTGTATTTACATTTTAATATTCAA--------TGA------------------TTTATTATC-AACATG----------ATATTATAAAGT----------------------------------------TTATTTATATGCCTATATTA------------------------------------------------------------------------------------------------------ACCTATATAGATCACACGTAGTTA-------ATTTATATTTTGCAGCTAGCCGCATT--TGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CTTCG--A-------------G-------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTAGT-------------------TTCTTTCATT---TATTTTATC---------------------------------------G--TATATTCTAGATCACACATGGATTGCCCGCAATG--TCTATGATGCATTGCCGCCATTTGCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................G--TCTATGATGCATTGCCGCCATT....	23	1	2.00	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CACACATGGATTGCCCGCAAT.............................	21	1	2.00	2	0	0	1	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................G--TCTATGATGCATTGCCGC........	19	1	2.00	2	0	2	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................G--TCTATGATGCATTGCCGCC.......	20	1	2.00	2	1	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................G--TCTATGATGCATTGCCGCCATTTGC.	26	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CACACATGGATTGCCCGCAATG--TCTAT.....................	27	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CACATGGATTGCCCGCAAT.............................	19	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................C---------------------------------------G--TATATTCTAGATCACACATGGAT.......................................	25	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GATCACACATGGATTGCCC..................................	19	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................ATATTCTAGATCACACATGGAT.......................................	22	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ACACATGGATTGCCCGCAAT.............................	20	1	1.00	1	0	0	0	1	0

dp5

C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAACACACCTGGGTGCACTCAACTC--CATACGCCGCACTGCCACCCTACGCT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................ATACGCCGCACTGCCACC.......	18	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCAACTC--CATACGCCGCACT.............	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ACACCTGGGTGCACTCAACTC--C.........................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CAACTC--CATACGCCGCACTGC...........	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AACACACCTGGGTGCACTCAACTC--C.........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CAACTC--CATACGCCGCACTGCC..........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................ACACACCTGGGTGCACTCA................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GGGTGCACTCAACTC--CATACGC...................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CACCTGGGTGCACTCAACTC--CATACGC...................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTC--CATACGCCGCACT.............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GAACACACCTGGGTGCACT..................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GCACTCAACTC--CATACGCC..................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................ACACACCTGGGTGCACTCAACTC--..........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CAACTC--CATACGCCGCACTGCCA.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................ACACACCTGGGTGCACTCAACTC--C.........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GAACACACCTGGGTGCACTCAACTC--..........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................ACACACCTGGGTGCACTCAACT.............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GTGCACTCAACTC--CATACGCCGCACTGC...........	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GGGTGCACTCAACTC--CATACGCC..................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAACACACCTGGGTGCACTCAACTC--CATACGCCGCACTGCCACCCTACGCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................CTC--CATACGCCGCACTGCC..........	19	1	4.00	4	4	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CACTCAACTC--CATACGCC..................	18	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CACTCAACTC--CATACGCCG.................	19	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................AACTC--CATACGCCGCACTGC...........	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GCACTCAACTC--CATACGCCGC................	21	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ACACCTGGGTGCACTCAACTC--CATACGC...................	28	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTC--CATACGCCGCACTGC...........	24	1	1.00	1	1	0	0	0	0	0

droAna3

CCCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCTTTCAGAACACAATTGGCTTCACTTCAG-----CCACGGGGCCATTCCCCAGGCAGCC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................CTTCACTTCAG-----CCACGGGGCC...............	21	1	4.00	4	3	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................GCTTCACTTCAG-----CCACGGGGC................	21	1	4.00	4	3	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CACTTCAG-----CCACGGGGCCATT............	21	1	3.00	3	3	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TTCACTTCAG-----CCACGGGGCCATTCCCC........	27	1	3.00	3	0	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GAACACAATTGGCTTCACTTC................................	21	1	3.00	3	0	3	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................ACACAATTGGCTTCACTTCAG-----CCACGG...................	27	1	3.00	3	1	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTCACTTCAG-----CCACGGG..................	23	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CACGGGGCCATTCCCCAGGCAGCC	24	1	2.00	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GGCTTCACTTCAG-----CCACGGGG.................	21	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TTCACTTCAG-----CCACGGGGCCA..............	21	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AATTGGCTTCACTTCAG-----CCACGGGGCC...............	27	1	2.00	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TTCACTTCAG-----CCACGGGGCC...............	20	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CTTCAG-----CCACGGGGCCATTCC..........	21	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTCACTTCAG-----CCACGGGGC................	25	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CAATTGGCTTCACTTCAG-----C........................	19	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CTTCACTTCAG-----CCACGGGGCCA..............	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CACTTCAG-----CCACGGGGCCA..............	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ACAATTGGCTTCACTTCAG-----C........................	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AACACAATTGGCTTCACTTCA...............................	21	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CACTTCAG-----CCACGGGGCCATTCCCCAGGC....	29	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CTTCACTTCAG-----CCACGGGGCCT..............	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TCAG-----CCACGGGGCCATTCCCC........	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GGCCATTCCCCAGGCAGC.	18	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CACTTCAG-----CCACGGGGCCATTCCCC........	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TCACTTCAG-----CCACGGGGCCA..............	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CTTCACTTCAG-----CCACGGGGCCATTCC..........	26	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TTCACTTCAG-----CCACGGGGT................	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CCACGGGGCCATTCCCCAGGCAGCC	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TCACTTCAG-----CCACGGGGC................	18	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GAACACAATTGGCTTCACTTCAG-----CCAC.....................	27	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CACTTCAG-----CCACGGGGCCAT.............	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................GCTTCACTTCAG-----CCACGGGG.................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TCACTTCAG-----CCACGGGGCC...............	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CTTCACTTCAG-----CCACGGGGCCATTCCCCA.......	29	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................ACACAATTGGCTTCACTTC................................	19	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AACACAATTGGCTTCACTTCAG-----C........................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CACAATTGGCTTCACTTCAG-----.........................	20	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................ACACAATTGGCTTCACTTCAG-----C........................	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CTTCACTTCAG-----CCACGGGGC................	20	1	1.00	1	1	0	0	0	0	0

droBip1

ACTTA--A------------------------CTAAC--------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTCTATTTT-------------------------------------------------TTTCGTCCTTTAGACTACGTTTGGATTAGCAGCAATG--TCTATGGAGGTCTGCCCGGTGGCGCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACTACCAATGGATCAGCAGCAATG--TCTACGGAGGCCTGCCAGGTGGCGCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTGTT--C-------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATACTCCACAGACTACACCTGGATTAGCGCCAATG--TCTACGGACCCCTGCCGCCCGGAGCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAAAATATCTTATATTTTTCATAATATCGTAAGGAATATA--ATA----AATGCAAA-----TCA-----CTTAT----AATTTTCTTGTTACG-------TTGTGG--------------------------TTACGTTTATAAATTGTCCATATTAACATA------------ACAATATGGTTGAAGAGGATATACATTTCTTTACCAAATTGAAAATTACTAATAAATTTATTAATATT---------------------------------------------------CACAC----------------------------------------------------TGCACTCCCGTAGACCACAGATGGATGCACTT---TA--GCCACGGCAGCGTGCCGCCGAATGCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTTGTAA------------------------CTTAT--------CGCCACTGA----CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTCCAAA---TATTC-------------------------------------------CATTCCCTTGCAGACTACACCTGGATTAGCACCAACG--TTTACGATGCCCTGCCAGCGGGAGCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACTACACCTGGATTAGCTCGAACG--TCTACGAAGGCCTGCCACCTGGCGCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATAT--A-------------TGA--TTTTCAAAAATTTAATATA----AGTATAAGTTAGTAT---------------------------------ATTTGCCTAGGCATTTTAAGG-------CTCTAAAA---------------------TATCATTTTAAT----GGTATACACTAAAATTAAATGGCGTATATATT----TACC-----------------------------------CATATATTTATTTTATTTTTGCTAGTTTTATTGACCTTTTCTTTA--------------ATTTACTCAAATTTACTCCA----------------------TT---TCCCTTTTTGCAGCCTACAAGTGGGTGCAATCTTC----------------GGCCTACTCCTCCC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAAG----------------------------CTTAT--------CGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTG----------------------------------------------CCC-TCTCTCCTTGCAGACAACACCTGGGTGCACTCGTCTC--CTCACGCTCCCTTGCCCGCTTATGCG	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATCAA--A------------------------CTTAT--------CGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTACTGCC------------------------------------------------TTTCTCCTTGCAGACAACACCTGGGTGCACTCGTCTC--CATACAGCCCCCTGCCCCCATACGCG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................GACAACACCTGGGTGCACT..................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CAACACCTGGGTGCACTCGT...............................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CTGGGTGCACTCGTCTC--C.........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................ACAACACCTGGGTGCACTCGTCTC--C.........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................AACACCTGGGTGCACTCGTCTC--..........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................ACCTGGGTGCACTCGTCTA--..........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GGGTGCACTCGTCTC--CATAC.....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................ACCTGGGTGCACTCGTCT.............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TACAGCCCCCTGCCCCCATACGCG	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCAGACAACACCTGGGTGCA....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTTTT--A-------------T-----------------------------------------------------------------------------------ATGTACTTTTGAA-------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAATATCATTAAGTGCATTT------------------CTGCAA---T--CTG

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

ATCAA--A------------------------CTTAT--------CGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTACTGCC------------------------------------------------TTTCTCCTTGCAGACAACACCTGGGTGCACTCGTCTC--CACACAGCCCCCTGCCCCCTTACGCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................................................................................................................................................................................................................................................ACACCTGGGTGCACTCGTCT.............................	20	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................CAACACCTGGGTGCACTCGTCTC--CACAC.....................	28	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CAACACCTGGGTGCACTCGTC..............................	21	1	1.00	1	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................CTCGTCTC--CACACAGCCCCCT.............	21	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GACAACACCTGGGTGCACTCGT...............................	22	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................ACAACACCTGGGTGCACTCGTC..............................	22	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................AACACCTGGGTGCACTCGTCT.............................	21	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................CAACACCTGGGTGCACTCGTCT.............................	22	1	1.00	1	0	1	0	0

droYak3

TTTTTTAT------------------------A--TT--------AGCAAATGA----TACTGTAAACCCTTTAG----GT----------------TTCTCTGTATTTA-ATTCATATTTTCAA--------TTATTTTTATTAATTTTATATA----------------------------------------------------------------------------------------------------------------------------------------------------------TTCATACCTACCACATTTTTAAGCTTATAACTAAACCTTCCCCTCTTTCTTCCAGCCTACAAGTGGGTTCAGTCCTCGG--CCTACTCCTCCCTTCCCGAGGAGGCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGG--CCTACTCCTCCCTTCCCGA.......	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GGGTTCAGTCCTCGG--CCTACTCCTCCC..............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CCTCGG--CCTACTCCTCCCTTCCCGAGG.....	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................ATTTA-ATTCATATTTTCAA--------T..........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CAGTCCTCGG--CCTACTCCTCC...............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTCCTCGG--CCTACTCCTCC...............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATTTTATATA----------------------------------------------------------------------------------------------------------------------------------------------------------TTCATACCTAC................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTCCTCGG--CCTACTC...................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TATTT--A-------------T-----------TATT--------TAT---------------------------TATATATTTTATTATATATATTTACTTTATTTATTTATTACAT-------ATTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAAAGAAAATAATTTT--GCATTAGGGAAATGTATTCAAAATAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_4749

scaffold_12875:583703-583853 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-9.5	-9.3	-9.3