ID:

dvi_4718

 Coordinate:

scaffold_12875:438116-438266 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.67 -3.17 -3.12

Flybase annnotation

CDS [Dvir\GJ21210-cds]; exon [dvir_GLEANR_6587:7]; intron [Dvir\GJ21210-in]

Repeatable elements

NameClassFamilyStrand
(CAAAC)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTGTATAAAGCGCAAACATCTAACAGCAAAAAAAAAAAAGAAAATAATGAAAAAATTGCAACTACCCCACAAAAACAACAAATAAAACCACGATTTTTCTGTTTCAATTTATGTTAACAATTTAAAAAACTTTTGCTTATTCACCAAACAATCGGAAAACCAAACCAAACCAAACCAAACCAAAACCAACCAACGATTAGTAAGGGCGACGGATTGAGCTACAGAACGTCGAGCGATCAGACGGGTCCTG
**************************************************.............................................(((((((.............((((((............))).))).............))))))).........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 V116
male body		 M027
male body		 SRR060675
140x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060654
160x9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060688
160_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 SRR060672
9x160_females_carcasses_total
 V053
head
 SRR060667
160_females_carcasses_total
.............................................................................................................................................................................................................................ACAGAACGTCGAGCGATCAGA......... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AACCAAAACCAACCAACGATT.................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TGAGCTACAGAACGTCGAGCG............... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CAGAACGTCGAGCGATCAGAC........ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GCTACAGAACGTCGAGCGATCAGAC........ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CGGATTGAGCTGCAGAACGTC.................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAGGGCGACGGATTGAGCTA............................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACCAACGATTAGTAAGGGCG.......................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GAGCGTCGAGCGATCGGACGGG..... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAGGGCGACGGATTGAGCT.............................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GAACGTCGAGCGATCAGACG....... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AACGATTAGTAAGGGCGACG....................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TACAGAACGTCGAGCGATCA........... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCAACCAACGATTAGTAAGGG............................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAAGGGCGACGGATTGAGCTAA............................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TTGAGCTACAGAACGTCGAGC................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAGGGCGACGGATTGAGCTAC............................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGTAAGGGCGACGGATTGAGC............................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CGATTAGTAAGGGCGACGGAT.................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTACAGAACGTCGAGCGATCA........... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTGAGCTACAGAACGTCGAG................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AACGTCGAGCGATCAGAC........ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AACGATTGGTAAGGGCGACGG...................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................ATCTAACGGCATAAAAAAAA..................................................................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................CCTTACCAAACCTAACCAAACC..................................................................... 22 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0
..............AAACATGTAACAGAAAAAAAAAAAAAAAA................................................................................................................................................................................................................ 29 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................AAAAGATTGCGACCACCCCA..................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATAAGTAAGGGCGACGATT.................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................ATATAAAACCATGCTTTTTCT...................................................................................................................................................... 21 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................ATTACCAAAGGCGACGGAT.................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................GTTCAGAACGTCGTGCGA.............. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAACATATTTCGCGTTTGTAGATTGTCGTTTTTTTTTTTTCTTTTATTACTTTTTTAACGTTGATGGGGTGTTTTTGTTGTTTATTTTGGTGCTAAAAAGACAAAGTTAAATACAATTGTTAAATTTTTTGAAAACGAATAAGTGGTTTGTTAGCCTTTTGGTTTGGTTTGGTTTGGTTTGGTTTTGGTTGGTTGCTAATCATTCCCGCTGCCTAACTCGATGTCTTGCAGCTCGCTAGTCTGCCCAGGAC
**************************************************.............................................(((((((.............((((((............))).))).............))))))).........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060681
Argx9_testes_total
 M028
head
 SRR060688
160_ovaries_total
 V116
male body		 SRR060679
140x9_testes_total
 SRR060673
9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060656
9x160_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060678
9x140_testes_total
 SRR1106714
embryo_2-4h
..........................................................................................TGCTAAAAAGACAAAGTTAAA............................................................................................................................................ 21 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TAAGTGGTTTGTTAGCCTTT............................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CGTTGATGGGGTGTTTTTGTT............................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GTTGATGGGGTGTTTTTGTTG........................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CCCGCTGCCTAACTCGATGTC.......................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........GCGTTTGTAGGTTGTCGTT............................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CGCGTTTGTAGATTGTCGTTT............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TTTGGTGGGGTGTTTTTGTTGTT......................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GTTTGGTTTTGGTTGGTTGCTA..................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTTTATTTTGGTGCTAAAAAGACAAAG................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................ATTTTGGTGCTAAAAAGACAA................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................ATGGGGTGTTTTTGTTGTTT........................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GGTGTTTTTGTTGTTTATTTT................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TATTTCGCGTTTGTAGATTGT................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GTTGATGGGGTGTTTTTGTTT........................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........TTCGCGTTTGTAGATTGTCGT.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTTGTTAGCCTTTTGGTTTGG.................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GAAAACGAGTAAGTGGTTTGT.................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGCCTAACTCGATGTCTTGCA..................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCTAACTCGATGTCTTGCAGC................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GGCTCGCTAGTCTGCCCAGGAC 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GTTTGTTAGCCTTTTGGTTTG..................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCTGCCTAACTCGATGTCTTG....................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CCGCTGCCTAACTCGATG............................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGGGGTTGTTGCTAATCATT............................................... 20 3 5 0.60 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0
........................................................................................................................................................................TTGGTTTGGTTTGGTTTTGGT.............................................................. 21 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TTGGTTTGGTTTGGTTTTGG............................................................... 20 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GGTTTGGTTTGGTTTGGTTTTG................................................................ 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTGAAAGCGGGTAAGTGGTTT...................................................................................................... 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTGGGGTTGTTGCTAATCAT................................................ 20 3 12 0.17 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................GGTTTGGTTTGGTTTGGTTTT................................................................. 21 0 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGGTTGTTGCTAATCATT............................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TGGTGGGGTGTTTTAGTTCT.......................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................GATGGTTGCCGATCATTC.............................................. 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
......................................................TTAACGTTGAGGTGGTGTTTA................................................................................................................................................................................ 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................TCGTTTTTTTTTTTTCTTTT.............................................................................................................................................................................................................. 20 0 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................ACAATTCTTAAATTTTGAGAAAA.................................................................................................................... 23 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TGGGGAGTTTATGTTGTT......................................................................................................................................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................GGTTTGGTTTGGTTTGGTTT.................................................................. 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTTGGTTTGGTTTGGTTTGG.......................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................TTTTGGTTTGGTTTG................................................................................ 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................TTTGGTTTGGTTTGGTTTGG..................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................GAAAAAGTGGTTGATTAGC................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGTCTTGCAAATCGCCAG............ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:438066-438316 + dvi_4718 ATTGTATAA----------AGCGCAA---------ACAT-------CTAACAGCAAAAAAAAAAA-----------------AGAA-AAT-------------AATGAAA-------------------AAATTGCAACTAC---------------CCCACAAA-AACA-----------------------ACAAATAAAACC-----ACGAT-TTTTCTGTTTC--------AA--TTTATGTT-AACA---ATTTA----AAA-AACTTTTGCTTATTCACC---AAACAATCGGAAAACCAAACCAAACCAAACCAAACCAAAACCAACCAACGA----TTAGTAAGGGCGACGGATTGAGCTACAGAACGTCGAGCGATCAGAC--GGGT----------------------------CCTG
droMoj3 scaffold_6496:5052134-5052366 - dmo_973 ATTGTATAA----------AGCGCAA---------AT-TTATCTATCTAACAA-----------------------------AGAG-CAACAGCAACAGCAACAACAACA-------------------AAATTGCAATTAT---------------C-CACAAA-AACA-----------------------ACAATC---GC--------CAC-AATTTTCAATC--------AAA--CTCTGTT-AACA-A-ATACC----AAA-TACTTTTGCTTATTCAC----AAAT--TTGGAAAAACACGAAAA-----------CTAAA-----ACCTCAA----TTAGTAAGGGCGATGGATTATACTTCGTGACCTCCACTGATCAATTTGGCA------------------------------ATG
droGri2 scaffold_15245:10532518-10532742 - ACCGTATAA----------AGTGCAA---------AT-T-------CTA---------------------------------ATAA-CATCATCAACAACAACAACAACA--------------------AAATGCAACTAA---------------C-CATAAA---------TCAAAA-----------------ACAAAACAA----AAACG-CTTTCTGTTTC--------AA--TTTCTGTT-AACCGA-ATAC------AA-AACTTTTGCTTATTCACTCACAATT-CA---AAAACGACACTCA-----------C--AA-----ACTGTGA----TTAGTAAGGGTGATGGATTGAGCTACCCTACGGCCAACGAGCAAATGGG-G-----------------------------AACG
droWil2 scf2_1100000004513:5353779-5354023 + AAA----------------AGTGTAAAAACAAAAAA--G------------------------AACGAAAAAAAAAATGCTAACAAAAATGCGCAACAATCACAAAAACAACAAACCAACAAAAAAGAAAAAATGCAA------------------------------------------ATTC--------A-----------------ACGAT-ATTTTTGTTTTCCTAACTAAAATTTCTTGTT-AACAAA-TCTGT---ACAA-AACTTTTGCTTATTCAC----AAATCGTTGG---------------------------------------ATCAATATAGTCGTGGTGATGGCTTGACCTATCCCACATCCACCGACCAGAATGGAGA------------------------TATACCAG
dp5 3:6131316-6131554 + ACTATATAATAA-------------A--------------------------------------------------------ACAA-CATCAGCAACAATTACAACAACAA----CCAGTACAAAAGCTAAACTGTAATGAA---------------C-GACAAA----------------CCAAACA-----ACA------ACAAAAA-CTCAC-ATTTCTGTTTG--------CAACTATC-GTTTAACAAA-TTACC-----AA-AACTTCTACTTATCCAC----AATT-TATGGAAAACGACTTTTA-----------C--G-----------AA----CTAGTCGTGGTGATGGCTTCAGCTATCCAACATCCACCGATCAAAGCGGCGAGG---------------------CGCCCCCCG
droPer2 scaffold_2:6346217-6346450 + ACTATATAATAA-------------A--------------------------------------------------------ACAA-CATCAGCAACAATTACAACAACAA----CCAGTACAAAAGCTAAACTGTAATCAA---------------C-GCCAAA----------------CCAAACA-----ACA------ACAAAAA-CTCAC-ATTTCTGTTTG--------CAACTTTC-GTTTAACAAA-TTA-----------CCTTCTACTTATCCAC----AATT-TATGGAAAATGACTTTTA-----------C--G-----------AA----CTAGTCGTGGTGATGGCTTCAGCTATCCAACATCCACCGATCAAAGCGGCGAGG---------------------CGCCCCCCG
droAna3 scaffold_13266:6109480-6109684 - ACTGCAAAA----------AATG------------------------------------------------------------------------------ACATCTAATA------------CAAGCTAAACTGTAAAAAG----AAAA---GCGC--C----------CAACTCGAAAACCTAACAACAAA-----------------AAGAT-AATTATGTTTC--------CAATTCACT-TTTAACGCC-ATACC-----CA-ACCTTCTGCTTACTCA------------CGG---------------------------------------AA----CTAGTCGCAGTGACGGCTACAGCTTTGCAACCTCCAGTGACCAGAATCGAGGATATGCCG---------------CCTCGCCCG
droBip1 scf7180000395839:266574-266781 - ACTGCAACA----------ACAAAAA---------A------------------------------------------------------------------CATCT---A------------CAAGCTAAACTGTAAAAAAAAAGAAAA---GCGC--C----------AAACTCGAAATCTTAA-------------------------CGAT-AATTCTGTTTA--------AAATTCACTATTTAACGCA-ATACC-----CA-ACCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----TTAGTCGCAGTGACGGCTACAGCTTCGCGACCTCCAGCGACCAGAGTCGAGGATACGCCG---------------CCTCGCCCG
droKik1 scf7180000302682:1535834-1536048 - ACTGTATAA----------AGTGCAA---------AAAT-------CTA---------------------------------AAAA-----------------------------------------------------------------------------------------CGA-AACCTAACAAACAAACAAACAAAA-------CAAAT-ATTTCTGTTTA--------AAACTCTTTGTTTAACGCAAATACCCCTCCCC-ACCTTCTGCTTATTCAC----AACCATATGG---------------------------------------AA----TTAGTCGCGGTGATGGCTACAGCTTTCCAACATCCAGTGACCAGAGTCGGGCATCAGCCACCACCACAGCGGTTGCTTCGCCCG
droFic1 scf7180000453948:622859-622935 - ACCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------AC----CTAGTCGCGGTGAAGGCTACAGTTACCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCG---------------CCTCGCCAG
droEle1 scf7180000491107:1175463-1175696 - AC---------------AAACTGCAA--------------------------------------------------------ACAA-CAACAACAACAGCTACAACTACAA------------CAAGCTAAACTGTAAAAAC----AAAAACAAAAAA-T----------CAACTCGAAAATTTAACAAACAA-----------------ACGATAATTTCTGTTTA--------AAACTCTCTGTTTAACGTA-ATACC----CCC-ACCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGAGCACCA---------------CCTCGCCCG
droRho1 scf7180000777200:103296-103525 + AC---------------AAACTGCAA---------AC-G-------------------------------------------ACAA-CAACAACAACAGCTACAACTACAA------------CAAGCTAAACTGTATAAAA---------CAAAAA--T----------CAACTCGAAAACCTAACAAACAA-----------------AAGATAATTTCTGTTTA--------AAACTCTCTGTTTAACGCA-ATACC----AC--CACTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------CCTCACCCG
droBia1 scf7180000301506:780216-780446 + ATTATATAAC-------AAACTGCAA---------TCA--------------------------------------------ACAA-------CAACAGCTACAAATACAA------------CAAGCTAAACTGTAAAAAA-------A---ACAA--T----------CAACTCGAAAACTTAACAAACAA-----------------ACAAT-ACTTATGTTTT--------AAACTCTCTGTTTAACGCA-ATACC----CCA-ACCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGCTGGCTACAGCTATCCGACCGCCAGTGACCAGACGCGGGTGCCCGCCG---------------CCTCGCCCG
droTak1 scf7180000415870:329886-330124 + ATTATACAACAAAC---AAACTGCAA--------------------------------------------------------TCAA-CAACAACAACAGCTACAACTACAA------------CAAGCTAAACTGTAAAAAA---------CAACAA--T----------CAACTCGAAAACCTAACAAACAA-----------------ACGAT-ACCTATGTTTA--------AAACTCTCTGTTTAACGCA-AAACC----CCA-CCCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGTTACAGCTATCCGACCTCCAGTGACCAGAGCCGAGTGTCCAGCA---------------CCTCGCCCG
droEug1 scf7180000409209:261342-261586 + ATTATATTACAAAC---AAACTGCAA--------------------------------------------------------ACAA-CAACAACAACAGCTACAACTACAA------------CAAGCTAAACTGTAATTAA----AAAAACAACAA--A----------AAACTTGAAAATTTAACAAACAA-----------------ACAAT-ATTTCTGTTTA--------AAACTCTCTGTTTAACGCA-ATACC----CCATACCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGCCGCGGTGGTGGCTACAGCTATAAGACATCCAGTGACCAGAGTCGAGTGACCACCA---------------CCTCGCCCG
dm3 chr2R:5917699-5917907 - ATTATATAACAAAA---AAACCTCAA--------------------------------------------------------ACAA-------CAACAGCTACAACTACAA------------TAAGCTAAACTGTAAAAAA----A--------------------------------------------------------CAAA--AACAAT-ATTTATGTTTA--------CAACTCTCTGTTTAACGCA-ATACC----CCA-ACCTTCTGCTTATTCAT----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------GCTCTCCCA
droSim2 2r:6693180-6693402 - ATTATATAATAAAAAAAAAAATGAAA--------------------------------------------------------ACAA-------CAACAGCTACAACTACAA------------TAAGCTAAACTGTAAAAAA----AAAA---ACAA----------------------------------------ACAAAACA----AACAAT-ATTTCTGTTTA--------CAACTCTCTGTTTAACGCA-ATACC----CTA-ACCTTCTGCTTATTCAT----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------GCTCTCCCA
droSec2 scaffold_1:3531562-3531780 - ATTATATAATAAATA-AAAAATGAAA--------------------------------------------------------ACAA-------CAACAGCTACAACTACAA------------TAAGCTAAACTGTAAAAAA----A-AA---ACAA----------------------------------------ACAAAACA----AACAAT-ATTTCTGTTTA--------CAACT--CTGTTTAACGCA-ATACC----CCA-ACCTTCTGCTTATTCAT----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------GCTCTCCCA
droYak3 2L:18545953-18546174 - AT---------------AAACTGCAA--------------------------------------------------------GCAA-------CAACAGCTAAAACTACAA------------TAAGCTAAATTGTAAAAAA---------------A-TCCAAAA----TAACTCGAAATCTTAACAAACAA-----------------TCAAA-ATTTCTGTTTA--------AAACTCTCTGTTTAACGCA-ATACC----CCA-ACCTTTTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGTTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------CTTCTCCAG
droEre2 scaffold_4929:8452307-8452529 + A----------------AAAATGCAA--------------------------------------------------------AAAA-------CAACAGCTACAACTACAA------------CAAGCTAAACTGTAAAAAA----A-AA---ACAA--A----TA----CAACTTGAAAACTTAACAAACAA-----------------ACAAT-ATTTATGTTTA--------AAACTCTCTTGTTAACGCA-ATACC----CCA-ACCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------CCTCTCCCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATTGTATAA----------AGCGCAA---------ACAT-------CTAACAGCAAAAAAAAAAA-----------------AGAA-AAT-------------AATGAAA-------------------AAATTGCAACTAC---------------CCCACAAA-AACA-----------------------ACAAATAAAACC-----ACGAT-TTTTCTGTTTC--------AA--TTTATGTT-AACA---ATTTA----AAA-AACTTTTGCTTATTCACC---AAACAATCGGAAAACCAAACCAAACCAAACCAAACCAAAACCAACCAACGA----TTAGTAAGGGCGACGGATTGAGCTACAGAACGTCGAGCGATCAGAC--GGGT----------------------------CCTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................ACAGAACGTCGAGCGATCAGA.......................................2112.002200000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................AACCAAAACCAACCAACGA----TT..................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TGAGCTACAGAACGTCGAGCG.............................................2111.001000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CAGAACGTCGAGCGATCAGAC--....................................2111.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GCTACAGAACGTCGAGCGATCAGAC--....................................2511.001000000010000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AAGGGCGACGGATTGAGCTA...........................................................2011.001000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AACCAACGA----TTAGTAAGGGCG........................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AAGGGCGACGGATTGAGCT............................................................1911.001000000000100000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GAACGTCGAGCGATCAGAC--G...................................2011.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................AACGA----TTAGTAAGGGCGACG.....................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TACAGAACGTCGAGCGATCA.........................................2011.001000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CCAACCAACGA----TTAGTAAGGG..........................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TAAGGGCGACGGATTGAGCTAA..........................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTGAGCTACAGAACGTCGAGC..............................................2111.001000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AAGGGCGACGGATTGAGCTAC..........................................................2111.001000000000100000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AGTAAGGGCGACGGATTGAGC.............................................................2111.001000000010000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................CGA----TTAGTAAGGGCGACGGAT..................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................CTACAGAACGTCGAGCGATCA.........................................2111.001000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ATTGAGCTACAGAACGTCGAG...............................................2111.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AACGTCGAGCGATCAGAC--....................................1811.001000000000000000000000000000000001000000000000000000000000000000
droMoj3
ATTGTATAA----------AGCGCAA---------AT-TTATCTATCTAACAA-----------------------------AGAG-CAACAGCAACAGCAACAACAACA-------------------AAATTGCAATTAT---------------C-CACAAA-AACA-----------------------ACAATC---GC--------CAC-AATTTTCAATC--------AAA--CTCTGTT-AACA-A-ATACC----AAA-TACTTTTGCTTATTCAC----AAAT--TTGGAAAAACACGAAAA-----------CTAAA-----ACCTCAA----TTAGTAAGGGCGATGGATTATACTTCGTGACCTCCACTGATCAATTTGGCA------------------------------ATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................TTCGTGACCTCCACTGATCGG........................................2111.001100000
..................................................................................AGAG-CAACAGCAACAGCAACAACA.................................................................................................................................................................................................................................................................................................................................24130.081000100
..................................................................................AGAG-CAACAGCAACAGCAACAA...................................................................................................................................................................................................................................................................................................................................22190.051000010
droGri2
ACCGTATAA----------AGTGCAA---------AT-T-------CTA---------------------------------ATAA-CATCATCAACAACAACAACAACA--------------------AAATGCAACTAA---------------C-CATAAA---------TCAAAA-----------------ACAAAACAA----AAACG-CTTTCTGTTTC--------AA--TTTCTGTT-AACCGA-ATAC------AA-AACTTTTGCTTATTCACTCACAATT-CA---AAAACGACACTCA-----------C--AA-----ACTGTGA----TTAGTAAGGGTGATGGATTGAGCTACCCTACGGCCAACGAGCAAATGGG-G-----------------------------AACGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAA----------------AGTGTAAAAACAAAAAA--G------------------------AACGAAAAAAAAAATGCTAACAAAAATGCGCAACAATCACAAAAACAACAAACCAACAAAAAAGAAAAAATGCAA------------------------------------------ATTC--------A-----------------ACGAT-ATTTTTGTTTTCCTAACTAAAATTTCTTGTT-AACAAA-TCTGT---ACAA-AACTTTTGCTTATTCAC----AAATCGTTGG---------------------------------------ATCAATATAGTCGTGGTGATGGCTTGACCTATCCCACATCCACCGACCAGAATGGAGA------------------------TATACCAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................TTCTTGTT-AACAAA-TCTGT---ACA..................................................................................................................................................................2211.00100010
dp5
ACTATATAATAA-------------A--------------------------------------------------------ACAA-CATCAGCAACAATTACAACAACAA----CCAGTACAAAAGCTAAACTGTAATGAA---------------C-GACAAA----------------CCAAACA-----ACA------ACAAAAA-CTCAC-ATTTCTGTTTG--------CAACTATC-GTTTAACAAA-TTACC-----AA-AACTTCTACTTATCCAC----AATT-TATGGAAAACGACTTTTA-----------C--G-----------AA----CTAGTCGTGGTGATGGCTTCAGCTATCCAACATCCACCGATCAAAGCGGCGAGG---------------------CGCCCCCCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................CAACATCCACCGATCAAAGCG....................................2112.0020100001000
..............................................................................................................................................................................................................................................................................................................................................................................................GATCAAAGCGGCGAGG---------------------CGC......1911.0010100000000
...............................................................................................................................................................................................................................................................................................................CGACTTTTA-----------C--G-----------AA----CTAGTCGT............................................................................2111.0010100000000
........................................................................................ATCAGCAACAATTACAACAACAA----CCA......................................................................................................................................................................................................................................................................................................................2611.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................ATCCACCGATCAAAGCGGCGAGG---------------------.........2311.0010100000000
droPer2
ACTATATAATAA-------------A--------------------------------------------------------ACAA-CATCAGCAACAATTACAACAACAA----CCAGTACAAAAGCTAAACTGTAATCAA---------------C-GCCAAA----------------CCAAACA-----ACA------ACAAAAA-CTCAC-ATTTCTGTTTG--------CAACTTTC-GTTTAACAAA-TTA-----------CCTTCTACTTATCCAC----AATT-TATGGAAAATGACTTTTA-----------C--G-----------AA----CTAGTCGTGGTGATGGCTTCAGCTATCCAACATCCACCGATCAAAGCGGCGAGG---------------------CGCCCCCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACTGCAAAA----------AATG------------------------------------------------------------------------------ACATCTAATA------------CAAGCTAAACTGTAAAAAG----AAAA---GCGC--C----------CAACTCGAAAACCTAACAACAAA-----------------AAGAT-AATTATGTTTC--------CAATTCACT-TTTAACGCC-ATACC-----CA-ACCTTCTGCTTACTCA------------CGG---------------------------------------AA----CTAGTCGCAGTGACGGCTACAGCTTTGCAACCTCCAGTGACCAGAATCGAGGATATGCCG---------------CCTCGCCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................CAGTGACGGCTACAGCTTTGCAAC.....................................................2411.001100000
..........................................................................................................................................................................................................................................................................................CA------------CGG---------------------------------------AA----CTAGTCGCAGTGACGGCTAC................................................................2711.001000001
....................................................................................................................................................................................................................................................................................................................................................................ACGGCTACAGCTTTGCAACCTCCAGT..............................................2611.001100000
droBip1
ACTGCAACA----------ACAAAAA---------A------------------------------------------------------------------CATCT---A------------CAAGCTAAACTGTAAAAAAAAAGAAAA---GCGC--C----------AAACTCGAAATCTTAA-------------------------CGAT-AATTCTGTTTA--------AAATTCACTATTTAACGCA-ATACC-----CA-ACCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----TTAGTCGCAGTGACGGCTACAGCTTCGCGACCTCCAGCGACCAGAGTCGAGGATACGCCG---------------CCTCGCCCGSizeHit CountTotal NormTotal
No Reads
droKik1
ACTGTATAA----------AGTGCAA---------AAAT-------CTA---------------------------------AAAA-----------------------------------------------------------------------------------------CGA-AACCTAACAAACAAACAAACAAAA-------CAAAT-ATTTCTGTTTA--------AAACTCTTTGTTTAACGCAAATACCCCTCCCC-ACCTTCTGCTTATTCAC----AACCATATGG---------------------------------------AA----TTAGTCGCGGTGATGGCTACAGCTTTCCAACATCCAGTGACCAGAGTCGGGCATCAGCCACCACCACAGCGGTTGCTTCGCCCGSizeHit CountTotal NormTotal
No Reads
droFic1
ACCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------AC----CTAGTCGCGGTGAAGGCTACAGTTACCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCG---------------CCTCGCCAGSizeHit CountTotal NormTotal
No Reads
droEle1
AC---------------AAACTGCAA--------------------------------------------------------ACAA-CAACAACAACAGCTACAACTACAA------------CAAGCTAAACTGTAAAAAC----AAAAACAAAAAA-T----------CAACTCGAAAATTTAACAAACAA-----------------ACGATAATTTCTGTTTA--------AAACTCTCTGTTTAACGTA-ATACC----CCC-ACCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGAGCACCA---------------CCTCGCCCGSizeHit CountTotal NormTotal
No Reads
droRho1
AC---------------AAACTGCAA---------AC-G-------------------------------------------ACAA-CAACAACAACAGCTACAACTACAA------------CAAGCTAAACTGTATAAAA---------CAAAAA--T----------CAACTCGAAAACCTAACAAACAA-----------------AAGATAATTTCTGTTTA--------AAACTCTCTGTTTAACGCA-ATACC----AC--CACTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------CCTCACCCGSizeHit CountTotal NormTotal
No Reads
droBia1
ATTATATAAC-------AAACTGCAA---------TCA--------------------------------------------ACAA-------CAACAGCTACAAATACAA------------CAAGCTAAACTGTAAAAAA-------A---ACAA--T----------CAACTCGAAAACTTAACAAACAA-----------------ACAAT-ACTTATGTTTT--------AAACTCTCTGTTTAACGCA-ATACC----CCA-ACCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGCTGGCTACAGCTATCCGACCGCCAGTGACCAGACGCGGGTGCCCGCCG---------------CCTCGCCCGSizeHit CountTotal NormTotal
No Reads
droTak1
ATTATACAACAAAC---AAACTGCAA--------------------------------------------------------TCAA-CAACAACAACAGCTACAACTACAA------------CAAGCTAAACTGTAAAAAA---------CAACAA--T----------CAACTCGAAAACCTAACAAACAA-----------------ACGAT-ACCTATGTTTA--------AAACTCTCTGTTTAACGCA-AAACC----CCA-CCCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGTTACAGCTATCCGACCTCCAGTGACCAGAGCCGAGTGTCCAGCA---------------CCTCGCCCGSizeHit CountTotal NormTotal
No Reads
droEug1
ATTATATTACAAAC---AAACTGCAA--------------------------------------------------------ACAA-CAACAACAACAGCTACAACTACAA------------CAAGCTAAACTGTAATTAA----AAAAACAACAA--A----------AAACTTGAAAATTTAACAAACAA-----------------ACAAT-ATTTCTGTTTA--------AAACTCTCTGTTTAACGCA-ATACC----CCATACCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGCCGCGGTGGTGGCTACAGCTATAAGACATCCAGTGACCAGAGTCGAGTGACCACCA---------------CCTCGCCCGSizeHit CountTotal NormTotal
No Reads
dm3
ATTATATAACAAAA---AAACCTCAA--------------------------------------------------------ACAA-------CAACAGCTACAACTACAA------------TAAGCTAAACTGTAAAAAA----A--------------------------------------------------------CAAA--AACAAT-ATTTATGTTTA--------CAACTCTCTGTTTAACGCA-ATACC----CCA-ACCTTCTGCTTATTCAT----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------GCTCTCCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................TC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGC...................................................................25110.00100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000800000
..............................................................................................................................................................................................................................................................................................................................................................................................GACCAGAGTCGAGTGTCCACCA---------------GCTCTCC..2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TATTCAT----AATC--ACGG---------------------------------------AA----CTAGTCGCGG..........................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
...............................................................................................................................................................................................................................................................................................................................................................................................ACCAGAGTCGAGTGTCCACCA---------------.........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..............................................................................................................................................................................................................................................................................CTTCTGCTTATTCAT----AATC--ACG..................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGCGACCAGAGTCGAGTGTCCACC.........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGACCAGAGTCGAG.................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AGAGTCGAGTGTCCACCA---------------.........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GCTTATTCAT----AATC--ACGG---------------------------------------AA----C...................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCGACCAGAGTCGAGT................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AA---AAACCTCAA--------------------------------------------------------ACAA-------CAACAG.........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CAGAGTCGAGTGTCCACCA---------------GC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................CTACAA------------TAAGCTAAACTGTA...................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................................................................................................................................................GTCGCGGTGATGGCTAC................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GACCTCCAGCGACCAGAGTC....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CTATCCGACCTCCAGCGACCA.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TATCCGACCTCCAGCGACC..........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................TCTGCTTATTCAT----AATC--ACGG---------------------------------------AA----CTAGTT..............................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TCCAGCGACCAGAGTCGAGTGTCCACCA---------------.........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................CAGCGACCAGAGTCGAGTGTCCACCA---------------.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................TGCTTATTCAT----AATC--ACGG---------------------------------------AA----....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ACCTCCAGCGACCAGAGTCGG..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGAGTGTCCACCA---------------GCTC.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ATGGCTACAGCTATCCGACCT...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CAT----AATC--ACGG---------------------------------------AA----CTAGTCGC............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TTTA--------CAACTCTCTGTTTAACG................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AAACCTCAA--------------------------------------------------------ACAA-------CAACAGCT.......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGG....................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TACAACTACAA------------TAAGCTAAACTGTAAAAA...............................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGTCGAGTGTCCACCA---------------GCTCT....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................AGCTATCCGACCTCCAGCGA............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................ATTCAT----AATC--ACGG---------------------------------------AA----CTAGT...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TCCAGCGACCAGAGTCGAGTGTCCACC.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................TATTCAT----AATC--ACGG---------------------------------------AA----CTAGTCGCGGT.........................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AACCTCAA--------------------------------------------------------ACAA-------CAACAGCTAA.....................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ATC--ACGG---------------------------------------AA----CTAGTCGCGGTG........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ATC--ACGG---------------------------------------AA----CTAGTCGCGGTGA.......................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CAGCTATCCGACCTCCAGCGAT...........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TATCCGACCTCCAGCGACCA.........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TAACGCA-ATACC----CCA-ACCTTCTGCT......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AGAGTCGAGTGTCCACCA---------------GC.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................AAGCTAAACTGTAAAAAA----A--------------------------------------------------------CAAA--A..........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TACAGCTATCCGACCTCCAGCGACCAGA.......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GCTTATTCAT----AATC--ACGG---------------------------------------AA----CTAG................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................GTCGCGGTGATGGCTACAGCTA...........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CTGCTTATTCAT----AATC--ACGG---------------------------------------AA----CTAG................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................................................................................................................................................................TC--ACGG---------------------------------------AA----CTAGTCGCGGTGA.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
........................................................................................................................................................................................................................................................................................TTCAT----AATC--ACGG---------------------------------------AA----CTAGTCGCGGT.........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................CGG---------------------------------------AA----CTAGTCGCGGTGATGG....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TCCGACCTCCAGCGACCAGAGTCGAG.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AA---AAACCTCAA--------------------------------------------------------ACAA-------CAACAGA........................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCGACCAGAGTCGAG.................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TACAGCTATCCGACCTCCAGCGAC...........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AGAGTCGAGTGTCCACCA---------------GCTCT....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................GCGACCAGAGTCGAGTGTCCACCG---------------.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TTATTCAT----AATC--ACGG---------------------------------------AA----CTAGTCGCG...........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................ACAGCTATCCGACCTCCAGCG.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GCTACAGCTATCCGACCTCCAGCGA............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TATCCGACCTCCAGCGACCAGAGTCGAG.................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CCAGCGACCAGAGTCGAGTGC..............................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................A-------CAACAGCTACAACTACA..............................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATTATATAATAAAAAAAAAAATGAAA--------------------------------------------------------ACAA-------CAACAGCTACAACTACAA------------TAAGCTAAACTGTAAAAAA----AAAA---ACAA----------------------------------------ACAAAACA----AACAAT-ATTTCTGTTTA--------CAACTCTCTGTTTAACGCA-ATACC----CTA-ACCTTCTGCTTATTCAT----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------GCTCTCCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................CGG---------------------------------------AA----CTAGTCGCGGTGATGTA...................................................................2212.00200000000000002000
......................................................................................................................................................................................................................................................TTAACGCA-ATACC----CTA-ACCTTC..........................................................................................................................................................2211.00100000100000000000
...........................................................................................................................................................................................................................................CAACTCTCTGTTTAACGCA-AT...........................................................................................................................................................................2111.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TCCAGCGACCAGAGTCGAGTGTCC............................2411.00100000000001000000
..................................................................................................................................................................................................................................................................................................ATC--ACGG---------------------------------------AA----CTAGTCGCGGTG........................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................TTTCTGTTTA--------CAACTCTCTGC......................................................................................................................................................................................2111.00110000000000000000
..........................................................................................................................................................................................................................................................................................................G---------------------------------------AA----CTAGTCGCGGTGATGGCTTTT...............................................................2411.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................CCAGCGACCAGAGTCGAGT................................1911.00100010000000000000
.......................................................................................................................................................................................................................................................................................................ACGG---------------------------------------AA----CTAGTCGCGGTGATG.....................................................................2111.00100000000000001000
..................................................................................................................................AACTGTAAAAAA----AAAA---A..................................................................................................................................................................................................................................................................................1720.50100000001000000000
...................................................................................................................................ACTGTAAAAAA----AAAA---...................................................................................................................................................................................................................................................................................15140.07100000010000000000
....................................................................................................................................CTGTAAAAAA----AAAA---A..................................................................................................................................................................................................................................................................................15200.05100000001000000000
droSec2
ATTATATAATAAATA-AAAAATGAAA--------------------------------------------------------ACAA-------CAACAGCTACAACTACAA------------TAAGCTAAACTGTAAAAAA----A-AA---ACAA----------------------------------------ACAAAACA----AACAAT-ATTTCTGTTTA--------CAACT--CTGTTTAACGCA-ATACC----CCA-ACCTTCTGCTTATTCAT----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------GCTCTCCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................ACAGCTATCCGACCTCCAGCG.............................................2111.0011000
........................................................................................................................................................................................................................................................................................................CGG---------------------------------------AA----CTAGTCGCGGTGATGG....................................................................2111.0011000
droYak3
AT---------------AAACTGCAA--------------------------------------------------------GCAA-------CAACAGCTAAAACTACAA------------TAAGCTAAATTGTAAAAAA---------------A-TCCAAAA----TAACTCGAAATCTTAACAAACAA-----------------TCAAA-ATTTCTGTTTA--------AAACTCTCTGTTTAACGCA-ATACC----CCA-ACCTTTTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGTTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------CTTCTCCAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
A----------------AAAATGCAA--------------------------------------------------------AAAA-------CAACAGCTACAACTACAA------------CAAGCTAAACTGTAAAAAA----A-AA---ACAA--A----TA----CAACTTGAAAACTTAACAAACAA-----------------ACAAT-ATTTATGTTTA--------AAACTCTCTTGTTAACGCA-ATACC----CCA-ACCTTCTGCTTATTCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGGTGATGGCTACAGCTATCCGACCTCCAGCGACCAGAGTCGAGTGTCCACCA---------------CCTCTCCCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................GCTATCCGACCTCCAGCGACCAGA.......................................2411.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGCGACCAGAGTCGAGTGTCCACCA---------------CC.......2711.0011000000
.........................................................................................................................................................................................................................................................................................TCAC----AATC--ACGG---------------------------------------AA----CTAGTCGCGG..........................................................................2411.0011000000
.............................................................................................................................................................................................................................................................................................................................................................CGCGGTGATGGCTACAGCTATCCGA......................................................2511.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGACCAGAGTCGAGTGTC.............................2511.0011000000

Generated: 05/16/2015 at 09:09 PM