ID:

dvi_4682

 Coordinate:

scaffold_12875:346914-347097 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.5 -12.4 -12.4

Flybase annnotation

exon [dvir_GLEANR_6548:1]; CDS [Dvir\GJ21167-cds]; CDS [Dvir\GJ21167-cds]; exon [dvir_GLEANR_6548:2]; intron [Dvir\GJ21167-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
T-richLow_complexityLow_complexity+

Sense Strand Reads

--------------------##############################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAAAACACAAACCTCAAAAATGTCTCTAGAACGTGCTGTTCGTGCCAAGGTGAATAAAAGTGAAAATACAAAAAAAAAAAAAGAAATAAATAAAAATATATATATATAAATACATGCAAATACAATTAAAATAGTTCAACTATGCAAATGAAAAGTGTTCGGTGCCGTAAATGAAAATTGTAATAATAATAATAATAATTTTTTTGTTGCAAAATGACCTCATCTGACTGTAGATTGCCGGCAAACGCAATCCCGAGATGGACAAAGAGGCCCAGGAATGGAT
**************************************************.............................................................((((..((................((((..((((((..((((.....)))).)).))))..))))..(((((((((.................))))))))).(((....))).))..)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V047
embryo
 SRR060667
160_females_carcasses_total
 M047
female body
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 V053
head
 M028
head
 SRR060679
140x9_testes_total
 GSM1528803
follicle cells		 SRR060660
Argentina_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060668
160x9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060658
140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060673
9_ovaries_total
 SRR060689
160x9_testes_total
 M027
male body		 SRR1106729
mixed whole adult body
.................................................................................................................................................................................................................................................................GATGGACAAAGAGGCCCAGGAATG... 24 0 1 4.00 4 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GATGGACAAAGAGGCCCAGGAAT.... 23 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................CTCTAGAACGTGCTGTTCGTGCCAAGA......................................................................................................................................................................................................................................... 27 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................GGACAAAGAGGCCCAGGAAT.... 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TGCCGGCAAACGCAATCCCGA........................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GATGGACAAAGAGGCCCAGGA...... 21 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....AACACAAACCTCAAAAATGTCTCTA............................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TTGCCGGCAAACGCAATCCCGA........................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ATGGACAAAGAGGCCCAGGA...... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TTGCCGGCAAACGCAATCCC............................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GTCTCTAGAACGTGCTGTTCGTGCCA............................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ATGGACAAAGAGGCCCAGGAATG... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................AAAAATGTCTCTAGAACGTGCT...................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GCCGGCAAACGCAATCCCGAGATGGAC.................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CAAAAATGTCTCTAGAACGTG........................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................CCCGAGATGGACAAAGAGGCCCAGGA...... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TCAAAAATGTCTCTAGAACGTGCTGTTC.................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GATGGACAAAGAGGCCCAGGAATGG.. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....AACACAAACCTCAAAAATGTC................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ACCTCAAAAATGTCTCTAGAACG.......................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................GAGATGGACAAAGAGGCCCAGGA...... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ATGTCTCTAGAACGTGCTGTTCGTGCC............................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GATGGACAAAGAGGCCCAGGAA..... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GTCTCTAGAACGTGCTGTTCGTG............................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AAATGTCTCTAGAACGTGCTGTTCGTG............................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TGCCGGCAAACGCAATCCCGAGA......................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AGATGTCTCTAGAACGTGCTGTTC.................................................................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TAGAACGTGCTGTTCGTGCCAAGATT....................................................................................................................................................................................................................................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CAAGGAGGCCCAGGAATGGAT 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.AAAAACACAAACCTCAAAAATGTCT.................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................GGACAAAGAGGCCCAGGAAC.... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................GACAAAGAGGCCCAGGAATG... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CGTGCTGTTCGTGCCAAGATT....................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................CCGGCTAACGCAATCCCG............................ 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AATGTCTCTAGAACGTGCTG..................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....AACACAAACCTCAAAAATGT.................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GAACGTGCTGTTCGTGCCAAGGT........................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GCAATCCCGAGATGGACAAAGAGGCCC.......... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TCTAGAACGTGCTGTTCGTGCC............................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................TCCCGAAATGGACAAAGAGGCTGA......... 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GACCTCATCTGACTGTAG.................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CGTGCTGTTCGTGCCAAGA......................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AACGTGCTGTTCGTGCCACGCTT....................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CGTGCTGTTCGTGCCAAG.......................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................AATGTCTCTAGAACGTGCTGTT................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CTAAAAAATGTCTCTAGAAC........................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ATGGACAAAGAGGCCCAGG....... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AAAATGTCTCTAGAACGGGA....................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................GTGCTGTTCGTGCCAAGAT........................................................................................................................................................................................................................................ 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AGGTCTCTAGAACGTGCTGTTCGTGC.............................................................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CTAGAACGTGCTGTTCGTGCCAAGAT........................................................................................................................................................................................................................................ 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................GTGCTGTTCGTGCCAAGATT....................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CAAAAATGTCTCTAGAAC........................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................GAGATGGACAAAGAGGCCCAGGAAT.... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CTCTTGAGCGTGCCGTTCGTGC.............................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................AATGTCTCTAGAACGTGCTGTA................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CGTGCTGTTCGTGCCAAGAT........................................................................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................GTGCCGTTCGTGCCAAGATT....................................................................................................................................................................................................................................... 20 3 4 0.75 3 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ATTTTTTGTTGCAAAATGA.................................................................. 19 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................CGTGCTGTTCGTGCCAATAT........................................................................................................................................................................................................................................ 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................AAATTGACTCTAGAACGTGGT...................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................CCCGAGATGGACACAGAGCCG........... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TACCAAAAAAAAAAGAGAAATAAATA............................................................................................................................................................................................... 26 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................AAACGCAATCCCGGG.......................... 15 1 20 0.20 4 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TTGCGGCCAACGCAATCCCG............................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AAGGTGAATTAAGGTGAA........................................................................................................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................ACTTACTGTTCGTGGCAAG.......................................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................TGGAACGTGATGTTAGTGC.............................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TAAATGATCATTGTAATAATC............................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTTTTTGTGTTTGGAGTTTTTACAGAGATCTTGCACGACAAGCACGGTTCCACTTATTTTCACTTTTATGTTTTTTTTTTTTTCTTTATTTATTTTTATATATATATATTTATGTACGTTTATGTTAATTTTATCAAGTTGATACGTTTACTTTTCACAAGCCACGGCATTTACTTTTAACATTATTATTATTATTATTAAAAAAACAACGTTTTACTGGAGTAGACTGACATCTAACGGCCGTTTGCGTTAGGGCTCTACCTGTTTCTCCGGGTCCTTACCTA
**************************************************.............................................................((((..((................((((..((((((..((((.....)))).)).))))..))))..(((((((((.................))))))))).(((....))).))..)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060679
140x9_testes_total
 V047
embryo
 SRR1106720
embryo_8-10h
 V116
male body		 M027
male body		 SRR060666
160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
......GTGTTTGTAGTTTTTACAGAGC................................................................................................................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CTTACTGGAGCAGACTGA...................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0 0
.............................................................................................................TTATGTACGTTTGTGTTA............................................................................................................................................................. 18 1 2 0.50 1 0 0 1 0 0 0 0 0
......TTGTTTGGAGTTTTTCCAGAGT................................................................................................................................................................................................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0
......TTGTTTGAAGTTTTTACAGAGC................................................................................................................................................................................................................................................................ 22 3 3 0.33 1 1 0 0 0 0 0 0 0
......GTCTTTGTAGTTTTTACAGAGT................................................................................................................................................................................................................................................................ 22 3 4 0.25 1 1 0 0 0 0 0 0 0
...........TGGAGTTGTTACTGAGATTTT............................................................................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................AGTCCAACGTTTTACTGGAGT............................................................. 21 3 7 0.14 1 1 0 0 0 0 0 0 0
.......TGGTTTGACTTTTTACAGAGA................................................................................................................................................................................................................................................................ 21 3 10 0.10 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................AAAAAGAAAGTTTTACTAGAGT............................................................. 22 3 14 0.07 1 0 0 0 0 1 0 0 0
.......................GGAGATATTGCAGGACAAG.................................................................................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 1 0 0 0
.......................GGAGATACTGCACGACAAG.................................................................................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 1 0 0 0
.................................................................................................ATATATATATATTTATGTA........................................................................................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................TTAGGGCGCAACCTGTAT................. 18 3 20 0.05 1 0 0 0 0 0 1 0 0
......ATGTTTGGAGTTGTTACAT................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0
........CTTTGTAGTTTTTACAGAGC................................................................................................................................................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:346864-347147 - dvi_4682 CAAAAAC---A-CAAACC-------TCAAAAATGTCTCTAGAACGTGCTGTTCGTGCCAAGGTG------AATAA---------------------------AAG---------------------TGAAAATACAAAAAAA--------------------------AA------AAAAGAAA---------------------TAAATAAAAATATATAT--ATATAA--ATACAT--GCAA--AT--A----------CAATTAAAATAGTTCAACTATGCAAATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---GTGTT---C-----------GGTGCCGTAAATGAAAATTGTAATAATAATAATAATAATTTTTTTGTTGCAAAAT----------------GA-CCTCA----------------------------------------------TCTGA----CTGTAGATTGCCGGCAAACGCAATCCCGAGATGGACAAAGAGGCCCAGGAATGGAT
droMoj3 scaffold_6496:5146926-5147265 + TTAAAAC-----AAGAAA-------CAAAACATGTCTCTGGAACGTGCTGTTCGTGCCAAGGTG------AAGAA---------------------------AAG---------------------TGAAA---CATAAA-------------------------------------------------------------------------------------------------------T--TT--T----------AAATTAAAAAAATTTAAAATAGCATAG---------------------------------------GAATCAAAAATTACAAAATAATTTTTTGTTTGAAAAAAAATTTAAAAATAATTTTTGATTTAAAAAAAAAAAAAAAAATTGTTTTGTTAAAAATTAAAATAAAAAAGATGTTACAA-----------TAAA---GTGT--------------TTTGTGC----------------------------------------CT----AATA-----AGTAA-----------------------------AATATTCATAATAATATTACTGAATTTGTTTTATAATTAAAATTAGATTGCCGGCAAACGCAATCCCCAGATGGACAAAGAGGCCCAGGAATGGAT
droGri2 scaffold_15245:10622413-10622645 + CTCAGAA-----CAAATC-------ACAAACATGTCTCTAGAACGTGCTGTTCGTGCCAAGGTG------AATAA---------------------------AAG---------------------TGATA---CACAAAAG-------AATAG-AAGTAAAATGATA--AAATAA--------------------------------------------AAATTAAA----------ATGCAA----------------AAAATTAAAA--------CT---CGATTGAAA-------------------------------AGTGCAAAAA--ATA-----T------------------------------G--------------------------------------------------------------------------------------------------TGAAAAGATAATA----------------------------------------AT----AAAGTTTT-------TTTATG------------------------------------------------------------G-CTATAGATTGCCGGCAAACGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGAT
droWil2 scf2_1100000004822:1957769-1958032 + CAAAAAG--TACCACAAAAAACTATCTAAACATGTCTCTTGAACGTGCTGTTCGTGCCAAGGTGGGAATAAATACCAA----G-----------------AAAAG---------------------TGAAA-------------------------------------AA------AT-AGATAAATAAAA---TAA-----------------------AAATTGAT----------TTGAAA-AAA-AAC------------------------------------------TCA--------AAAAGTGAA-T--TTAAAAGTGC--------------------------------------------------TT--G----------------------------------------------------------GA------------AAAGTGTTTT-----------------TTTT----------------------------------------CTAACAAAATGTTT-------GTTT-GT-TTTTAT----TC---TCTCGG--------------------------------ATATTC-ATATAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAAGAGGCCCAGGAATGGAT
dp5 3:788809-789075 - CAAAA-A-----CACAAC-------AC-AAAATGTCTCTAGAACGTGCTGTTCGTGCCAAGGTG------AATACTAA------------------------TTG---------------------TGGAA----------A-------AATAA-AAAGAAAATGCAA--AAGGAAAAAATT-------------------------------------------TAT----------T-TCAAAAAAGAAC------TGAAAAGAAAAA--------C-----GAT-ACAA-------------------------------AGTGCAACAA--AATTA------------------------------------------------------------------------------------------------------AGAAAATCCTAT----GTGGCTA-TT---------------TG-----------------------------------------CT----AAAGTTTT-------GTTT-GT-TCTCGTTTGATCCTCG-----------------------------------CTCGATCC-CCATAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCTCAGGAGTGGGT
droPer2 scaffold_2:957692-957958 - dpe_994 CAAAA-A-----CACAAC-------AC-AAAATGTCTCTAGAACGTGCTGTTCGTGCCAAGGTG------AATACTAA------------------------TTG---------------------TGGAA----------A-------AATAA-AAAGAAAATGCAA--AAGGAAAAAATT-------------------------------------------TAT----------T-TCAAAAAAGAAC------TGAAAAGAAAAA--------C-----GAT-ACAA-------------------------------AGTGCAACAA--AATTA------------------------------------------------------------------------------------------------------AGAAAATCCTAT----GTGGCTA-TT---------------TG-----------------------------------------CT----AAAGTTTT-------GTTT-GT-TCTCGTTTGATCCTCG-----------------------------------CTCGATCC-CCATAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCTCAGGAGTGGGT
droAna3 scaffold_13266:16444384-16444604 + dan_2056 CAAAAAC-----CAAAAA-------CGCAATATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATAAAAAA---TTTTTTAA--AAACTTTATTAAGTGAAAGTGAATTTACAAACTGAAAAA----------A-----------G--------------AA------A----------------------------TA------------AA--------------A-----A---------CCATGGATGAAATGGA------------------------A-------------------------------AGTGAAAAAAAAAATTA------------------------------------------------------------------------------------------------------ATAATAACCTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGAT
droBip1 scf7180000396384:548572-548792 + CAAAAAC-----CAAAAA-------CGCAAAATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATAATTT-------TTTAATAAAACTTTAATAAGTGAAAGTGAATTTAAAAACT-----A------AAAAA-----------A--------------AA------A----------------------------TA------------AA--------------A-----A---------CCAAAAATAAAATGAA------------------------A-------------------------------AGTGGAAACAAAAATTA------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------ACT---ATAACTA---TT-GTT------------------------------------------------------------TTTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGAT
droKik1 scf7180000302277:711583-711818 - CAAAT-C-----CAGAAA-------ACAAACATGTCTCTAGAGCGTGCCGTTCGTGCCAAGGTG------AATAATCAACAAG-------------------CAG---------------------TGAAA-----------------------------------------------AGAATCCTTAAATC--GAA--------T-----------------------------CAA--GACA----------AGAGTGAAAACAA------------------------C-------------------------------AGTGAAAAAAAATATTATACT------------------------------GTGA----------------------------------------------------------------AG---------------------------------AAATTGTGA----------------------------------------CT----AAATGTT-GTG----TCCTT-TTTGTTC----------------------------------------------TTTAATCCAACTTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGGT
droFic1 scf7180000453811:540561-540803 + CAAAA------------A-------CCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTTAA---G-------------------CAG---------------------TGAAC---CAAAAAA-----------AAA-------------A------AGAAAGATCCTTTAAAAGAAAACAT--------------------------------------C-TCAGAAAAACA----------------------------------------CAGT----------------GAA-A----AT---------------A-----T------------------------------GTGAAAATT----------------------------------------------------------GA-----------AATG---GAGTT---TGG-TGAAATG-TGTGT-----------------------------------------T----AAATTTTT-------GTTT-GCTTGTTC----------------------------------------------TTTGATCC-AACCAGATTGCTGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGAT
droEle1 scf7180000491282:345787-346025 + CAAAG-C-----CAAAAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTTAA---G-------------------CAG---------------------TGCGA---------------------------------------AATG--AAAAGATCCTTACAA---AAAAATG----T-----------------------------CAC--AAAA---------------------AG------------------------AAGT----------------GAA-A---TAAAA--------------------------------------------------GTGAACATG----------------------------------------------------------GA-----------C------GACAATTGGTCGACAATTTTCGTGA----------------------------------------CT----AAAGTTTT-------GTTTTGTT---TC----------------------------------------------TTCAATCC-ACCTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGAT
droRho1 scf7180000780086:120223-120460 + CAAAA-C-----CAAAAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTTAA---G-------------------CAG---------------------TGAAA-------------------TTAGA-------------A------AGAAAGATCCTTAAAA---AAATCTA---------------------------------------TAAA---------------------AA------------------------AAGT----------------GAA-A----AA---------------A-----T------------------------------GTGAAAGTT----------------------------------------------------------TT-----------AGAG---GATAT---TTG-TGAATTTTAGTGC----------------------------------------CT----AAAGTTTT-------GTTTTGT-TTTTA----------------------------------------------TTTAATCC-ACCCAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGGT
droBia1 scf7180000302291:1074197-1074429 - CAAAA-C-----CAAGAA-------CCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATAGTTGA---C-------------------CAG---------------------TGGAG------AA--------------GA-------------GA------AAAAGATCCTTAAAA---TAATA-----------------------------------ACAC--GAAA-----------------------------------------------AAGTTA--------AAGTG-----------------------------------------------------------------TGAAAGTT----------------------------------------------------------AA-----------GAAC---GAGTT---TTG-TGAAAGGATGTGT----------------------------------------CT----ACATTTTT-------ATTT-GTTT--CC----------------------------------------------TTTCATCC-ACCTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGGT
droTak1 scf7180000415379:290119-290366 + CAAAA-C-----CAACAA-------ACCAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTTGA---T-------------------CAG---------------------TGCAA------AAAAGAAGAAGAA-AAGA-------------A------AGAAATATCCTTAAAA---AAATCC----------------------------------------TCAG---------------------AG------------------------AAGT----------------GAT-A----AA---------------A-----C------------------------------GTGAAAGTT----------------------------------------------------------AA-----------AAAG---AATTT---TTC-CAAGATGTTGTGT----------------------------------------CT----AACTT-TT-------TTTG-GTTTCTCC----------------------------------------------TTTGATCC-ACACAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGAT
droEug1 scf7180000409663:934559-934810 + CAAAA-C-----CAAAAA-------CCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTTGA---T-------------------CAG---------------------TGCTA------AAAAAAAAACTAATTTAA-------------A------TTAAAGATCCTTAAAA---AATTTTG---------------------------------------TTAA---------------------AA------------------------ATAT----------------GAATA----AAAA--------------------------------------------------GTGAAAGTT----------------------------------------------------------AT-----------TATA---GTTA-TT-TTG-TGAAATTTTGTGC----------------------------------------CT----AAAACTT---G----ATTC-GA-TTTCA----------------------------------------------TTTAATCC-ATCTAGATTGCCGGCAAACGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGGT
dm3 chr2R:9134229-9134471 + CAAAAAC-----CAAGAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTCAA---T-------------------CAG---------------------TGAAG-------------------------------------AA------AAAAGATCCTTAAGA---AAACATAGATAT----------------------------AAAG--GAAA--AT------------------------------------------------AGATGAAAGAAATG-----------------------------------------------------------------TGAAA-TT----------------------------------------------------------AC-----------CAAA---CAGTT---TTG-TGAAATATTGTGC----------------------------------------CT----AAAAT---ATG----AATTT-TTTCTTA----------------------------------------------TCCGATCC-ACCTAGATTGCCAGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGAT
droSim2 2r:9802032-9802271 + dsi_8334 CAAAAA---AACCAAGAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTCAA---T-------------------CAG---------------------TGAAG-------------------------------------AA------AAAAGATCCTTAAGA---GAATACACAT------------------------------ACAC--GAAA--A-----------------------------------------------ATATATGCAAGAAATGTGAA-A------------------------------------------------------------------------------------------------------------------------------------------CAAA---GAGTT---TTG-TGAAATATTGTGC----------------------------------------CT----AAAGT---ATG----AATTT-TTTCTCA----------------------------------------------TCCGATCC-ACTTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGAT
droSec2 scaffold_1:6656858-6657094 + CAAAAA---AACCAAGAA-------TCCAATGTGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTCAA---T-------------------CAG---------------------TGAAG-------------------------------------AA------AGCGGATCCTTAAGA---AAACATACAC------------------------------ACAC--CAAA--A-----------------------------------------------TTATATGCAAGAAATGTGAA-A------------------------------------------------------------------------------------------------------------------------------------------CAAT---GAGTT---TTG-TGAAA---TGTGC----------------------------------------CT----AAAAT---ATG----ATTTT-TTTCTCA----------------------------------------------TCCGATCC-ACTTAGATTGCCGGCCAGCGCAATCCCGAGATGAACCAGGAGGCCCAGGAAGGGAT
droYak3 2R:7828202-7828462 - CAAAA-CCAAA---CCAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACCCAA---T-------------------CAG---------------------TGAAA-------------------------------------AA------ATAAGATCCTTACGA---AAATATATGT--------------------ATACGAGTATACAC--GAAA--AT------------------------------------------------GGATTGAAGAAGTG-----------------------------------------------------------------TGAAATCT----------------------------------------------------------AA-----------CAAG---GAGCT---TTG-TGAAATGTTGTGC----------------------------------------CT----AAAGT---ATGCCTT---TT-TTTCTCAT----TCTTGA-----------------------------------AACGATCC-ACCTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGAT
droEre2 scaffold_4845:16681322-16681583 - CAAAA-C-----CAAGAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACCCAA---T-------------------CAG---------------------TGAAG-------------------------------------GA------ATAAGATCCTTACGA---GAATATACAT--------------------ATACTTGTATACAC--GACA--AT------------------------------------------------CG-----------GTGAA-AATCTAACAG--------------------------------------------------TGATCTCT----------------------------------------------------------AG-----------CAAT---GAGTT---GTG-TGAAATGTTGTGC----------------------------------------CT----AAACT---ATGCATA---TT-TTTCTCAT----TCCTGA-----------------------------------ATCGATTC-ATCTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAAAAAC---A-CAAACC-------TCAAAAATGTCTCTAGAACGTGCTGTTCGTGCCAAGGTG------AATAA---------------------------AAG---------------------TGAAAATACAAAAAAA--------------------------AA------AAAAGAAA---------------------TAAATAAAAATATATAT--ATATAA--ATACAT--GCAA--AT--A----------CAATTAAAATAGTTCAACTATGCAAATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---GTGTT---C-----------GGTGCCGTAAATGAAAATTGTAATAATAATAATAATAATTTTTTTGTTGCAAAAT----------------GA-CCTCA----------------------------------------------TCTGA----CTGTAGATTGCCGGCAAACGCAATCCCGAGATGGACAAAGAGGCCCAGGAATGGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAAGAGGCCCAGGAATG...2414.004000100000000000001000000000000000000000000000000000000000002000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAAGAGGCCCAGGAAT....2312.002000000000000001000000000001000000000000000000000000000000000000
...................................CTCTAGAACGTGCTGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000100000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGAGGCCCAGGAAT....2012.002000000000020000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGCAAACGCAATCCCGA...........................2112.002000100000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAAGAGGCCCAGGA......2112.002000000000000000001000000010000000000000000000000000000000000000
....AAC---A-CAAACC-------TCAAAAATGTCTCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGGCAAACGCAATCCCGA...........................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAAAGAGGCCCAGGA......2011.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGGCAAACGCAATCCC.............................2011.001000000000000000100000000000000000000000000000000000000000000000
.................................GTCTCTAGAACGTGCTGTTCGTGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAAAGAGGCCCAGGAATG...2311.001000100000000000000000000000000000000000000000000000000000000000
...........................AAAAATGTCTCTAGAACGTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCAAACGCAATCCCGAGATGGAC....................2711.001000100000000000000000000000000000000000000000000000000000000000
..........................CAAAAATGTCTCTAGAACGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAGATGGACAAAGAGGCCCAGGA......2611.001000000000000000000000000000001000000000000000000000000000000000
.........................TCAAAAATGTCTCTAGAACGTGCTGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAAGAGGCCCAGGAATGG..2511.001000000000000000000000000000000000000000000000000000000000001000
....AAC---A-CAAACC-------TCAAAAATGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
...............ACC-------TCAAAAATGTCTCTAGAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGGACAAAGAGGCCCAGGA......2311.001000000000000000001000000000000000000000000000000000000000000000
...............................ATGTCTCTAGAACGTGCTGTTCGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAAGAGGCCCAGGAA.....2211.001000000000000000000000000000000000000000000000000000000000000100
.................................GTCTCTAGAACGTGCTGTTCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
.............................AAATGTCTCTAGAACGTGCTGTTCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGCAAACGCAATCCCGAGA.........................2311.001000000000000000100000000000000000000000000000000000000000000000
.AAAAAC---A-CAAACC-------TCAAAAATGTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGAGGCCCAGGAAC....2011.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGAGGCCCAGGAATG...2011.001001000000000000000000000000000000000000000000000000000000000000
..............................AATGTCTCTAGAACGTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
....AAC---A-CAAACC-------TCAAAAATGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
........................................GAACGTGCTGTTCGTGCCAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCCGAGATGGACAAAGAGGCCC..........2711.001000100000000000000000000000000000000000000000000000000000000000
....................................TCTAGAACGTGCTGTTCGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-CCTCA----------------------------------------------TCTGA----CTGTAG..................................................1811.001000000000000000000000000000000000000000000000000000000000001000
...........................................CGTGCTGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
...........................................CGTGCTGTTCGTGCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
..............................AATGTCTCTAGAACGTGCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAAAGAGGCCCAGG.......1911.001000000000000000000000000000001000000000000000000000000000000000
..........................CAAAAATGTCTCTAGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGGACAAAGAGGCCCAGGAAT....2511.001000100000000000000000000000000000000000000000000000000000000000
..............................AATGTCTCTAGAACGTGCTGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
TTAAAAC-----AAGAAA-------CAAAACATGTCTCTGGAACGTGCTGTTCGTGCCAAGGTG------AAGAA---------------------------AAG---------------------TGAAA---CATAAA-------------------------------------------------------------------------------------------------------T--TT--T----------AAATTAAAAAAATTTAAAATAGCATAG---------------------------------------GAATCAAAAATTACAAAATAATTTTTTGTTTGAAAAAAAATTTAAAAATAATTTTTGATTTAAAAAAAAAAAAAAAAATTGTTTTGTTAAAAATTAAAATAAAAAAGATGTTACAA-----------TAAA---GTGT--------------TTTGTGC----------------------------------------CT----AATA-----AGTAA-----------------------------AATATTCATAATAATATTACTGAATTTGTTTTATAATTAAAATTAGATTGCCGGCAAACGCAATCCCCAGATGGACAAAGAGGCCCAGGAATGGATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATGGACAAAGAGGCCCAG........2211.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGAGGCCCAGGAATGG..2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGGCAAACGCAATCCCCAGAT........................2511.001100000
.......................................GGAACGTGCTGTTCGTGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............................CATGTCTCTGGAACGTGCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.......................................GGAACGTGCTGTTCGTGCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGCAAACGCAATCCCCAGATGGAC....................2811.001100000
.................................GTCTCTGGAACGTGCTGTTCGTGCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
................AA-------CAAAACATGTCTCTGGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGAGGCCCAGGAATGG..2211.001100000
.................................GTCTCTGGAACGTGCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................................................20200.051100000
droGri2
CTCAGAA-----CAAATC-------ACAAACATGTCTCTAGAACGTGCTGTTCGTGCCAAGGTG------AATAA---------------------------AAG---------------------TGATA---CACAAAAG-------AATAG-AAGTAAAATGATA--AAATAA--------------------------------------------AAATTAAA----------ATGCAA----------------AAAATTAAAA--------CT---CGATTGAAA-------------------------------AGTGCAAAAA--ATA-----T------------------------------G--------------------------------------------------------------------------------------------------TGAAAAGATAATA----------------------------------------AT----AAAGTTTT-------TTTATG------------------------------------------------------------G-CTATAGATTGCCGGCAAACGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................AAACATGTCTCTAGAACGTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
droWil2
CAAAAAG--TACCACAAAAAACTATCTAAACATGTCTCTTGAACGTGCTGTTCGTGCCAAGGTGGGAATAAATACCAA----G-----------------AAAAG---------------------TGAAA-------------------------------------AA------AT-AGATAAATAAAA---TAA-----------------------AAATTGAT----------TTGAAA-AAA-AAC------------------------------------------TCA--------AAAAGTGAA-T--TTAAAAGTGC--------------------------------------------------TT--G----------------------------------------------------------GA------------AAAGTGTTTT-----------------TTTT----------------------------------------CTAACAAAATGTTT-------GTTT-GT-TTTTAT----TC---TCTCGG--------------------------------ATATTC-ATATAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAAGAGGCCCAGGAATGGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGGCCCAGGAATGGAT2012.00201100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGAGATGGACAAAGAGGCCCAGGA......2712.00200020
.......................ATCTAAACATGTCTCTTGAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00220000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAGATGGACAAAGAGGCCCAGGA......2611.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGCGCAATCCCGAGA.........................1911.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAGGCCCAGGAATGGAT2111.00100100
..AAAAG--TACCACAAAAAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.................................GTCTCTTGAACGTGCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
....................................TCTTGAACGTGCTGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAAAGAGGCCCAGGAATGGAT2511.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAAGCGCAATCCCGAGATGGAC....................2511.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGGACAAAGAGGCCCAGGA......2311.00100100
.......................ATCTAAACATGTCTCTTGAACGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAGGCCCAGGAATGGA.2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGCAAGCGCAATCCCGAGATGGAC....................2811.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGCCCAGGAATGGA.1811.00100010
...............................ATGTCTCTTGAACGTGCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGGACAAAGAGGCCC..........1911.00110000
.................................GTCTCTTGAACGTGCTGTTCGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGG--------------------------------ATATTC-ATATAG..................................................1811.00100010
.........................CTAAACATGTCTCTTGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAAGAGGCCCA.........1811.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGCCCAGGAATGGAT1911.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATGGACAAAGAGGCC...........1911.00110000
dp5
CAAAA-A-----CACAAC-------AC-AAAATGTCTCTAGAACGTGCTGTTCGTGCCAAGGTG------AATACTAA------------------------TTG---------------------TGGAA----------A-------AATAA-AAAGAAAATGCAA--AAGGAAAAAATT-------------------------------------------TAT----------T-TCAAAAAAGAAC------TGAAAAGAAAAA--------C-----GAT-ACAA-------------------------------AGTGCAACAA--AATTA------------------------------------------------------------------------------------------------------AGAAAATCCTAT----GTGGCTA-TT---------------TG-----------------------------------------CT----AAAGTTTT-------GTTT-GT-TCTCGTTTGATCCTCG-----------------------------------CTCGATCC-CCATAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCTCAGGAGTGGGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAGGAGGCTCAGGAGTGGGT2712.0020000000002
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGAGATGGACAAGGAGGCTCAGG.......2611.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGGAGGCTCAGGAGTG...2011.0010000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAAGGAGGCTCAGGAGTG...2311.0010000100000
................................TGTCTCTAGAACGTGCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGGACAAGGAGGCTCAGG.......2211.0010100000000
droPer2
CAAAA-A-----CACAAC-------AC-AAAATGTCTCTAGAACGTGCTGTTCGTGCCAAGGTG------AATACTAA------------------------TTG---------------------TGGAA----------A-------AATAA-AAAGAAAATGCAA--AAGGAAAAAATT-------------------------------------------TAT----------T-TCAAAAAAGAAC------TGAAAAGAAAAA--------C-----GAT-ACAA-------------------------------AGTGCAACAA--AATTA------------------------------------------------------------------------------------------------------AGAAAATCCTAT----GTGGCTA-TT---------------TG-----------------------------------------CT----AAAGTTTT-------GTTT-GT-TCTCGTTTGATCCTCG-----------------------------------CTCGATCC-CCATAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCTCAGGAGTGGGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...AA-A-----CACAAC-------AC-AAAATGTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAGGAGGCTCAGGA......2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCGAGATGGACAAGGAGGCTC..........2411.001100000
.........................................AACGTGCTGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGAGGCTCAGGAGTG...1911.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAAGGAGGCTCAGGAGTGGGT2611.001100000
...........................................CGTGCTGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...................................CTCTAGAACGTGCTGTTCGTGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..............................................GCTGTTCGTGCCAAGGTG------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCCGAGATGGACAAGG................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAGGAGGCTCAGGAGT....2311.001100000
droAna3
CAAAAAC-----CAAAAA-------CGCAATATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATAAAAAA---TTTTTTAA--AAACTTTATTAAGTGAAAGTGAATTTACAAACTGAAAAA----------A-----------G--------------AA------A----------------------------TA------------AA--------------A-----A---------CCATGGATGAAATGGA------------------------A-------------------------------AGTGAAAAAAAAAATTA------------------------------------------------------------------------------------------------------ATAATAACCTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................ATATGTCTCTTGAGCGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000
............................AATATGTCTCTTGAGCGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002020000
................................TGTCTCTTGAGCGTGCCGTTCGTGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAATCCCGAGATGGACA...................2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGGAGGCCCAGGAATGG..2211.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGCCCAGGAATGGA.1911.001010000
..............AAAA-------CGCAATATGTCTCTTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAGGAGGCCCAGGAAT....2311.001010000
....AAC-----CAAAAA-------CGCAATATGTCTCTTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
...AAAC-----CAAAAA-------CGCAATATGTCTCTTGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..........................................................................................................................................................................................................................................................................................................................................AAAAAAATTA------------------------------------------------------------------------------------------------------ATAATAACC............................................................................................................................................................................................................................1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCAATCCCGAGATG.......................1811.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGGAGGCCCAGGA......1811.001100000
.................................GTCTCTTGAGCGTGCCGTTCGTGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCAAGCGCAATCCCGAGATG.......................2411.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCGAGATGGACAAGGAGG.............2211.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCAAGCGCAATCCCGAGATGGACA...................2711.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGGCAAGCGCAATCCCGAGATG.......................2611.001010000
..AAAAC-----CAAAAA-------CGCAATATGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droBip1
CAAAAAC-----CAAAAA-------CGCAAAATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATAATTT-------TTTAATAAAACTTTAATAAGTGAAAGTGAATTTAAAAACT-----A------AAAAA-----------A--------------AA------A----------------------------TA------------AA--------------A-----A---------CCAAAAATAAAATGAA------------------------A-------------------------------AGTGGAAACAAAAATTA------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------ACT---ATAACTA---TT-GTT------------------------------------------------------------TTTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGATSizeHit CountTotal NormTotal
No Reads
droKik1
CAAAT-C-----CAGAAA-------ACAAACATGTCTCTAGAGCGTGCCGTTCGTGCCAAGGTG------AATAATCAACAAG-------------------CAG---------------------TGAAA-----------------------------------------------AGAATCCTTAAATC--GAA--------T-----------------------------CAA--GACA----------AGAGTGAAAACAA------------------------C-------------------------------AGTGAAAAAAAATATTATACT------------------------------GTGA----------------------------------------------------------------AG---------------------------------AAATTGTGA----------------------------------------CT----AAATGTT-GTG----TCCTT-TTTGTTC----------------------------------------------TTTAATCCAACTTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGGTSizeHit CountTotal NormTotal
No Reads
droFic1
CAAAA------------A-------CCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTTAA---G-------------------CAG---------------------TGAAC---CAAAAAA-----------AAA-------------A------AGAAAGATCCTTTAAAAGAAAACAT--------------------------------------C-TCAGAAAAACA----------------------------------------CAGT----------------GAA-A----AT---------------A-----T------------------------------GTGAAAATT----------------------------------------------------------GA-----------AATG---GAGTT---TGG-TGAAATG-TGTGT-----------------------------------------T----AAATTTTT-------GTTT-GCTTGTTC----------------------------------------------TTTGATCC-AACCAGATTGCTGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGATSizeHit CountTotal NormTotal
No Reads
droEle1
CAAAG-C-----CAAAAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTTAA---G-------------------CAG---------------------TGCGA---------------------------------------AATG--AAAAGATCCTTACAA---AAAAATG----T-----------------------------CAC--AAAA---------------------AG------------------------AAGT----------------GAA-A---TAAAA--------------------------------------------------GTGAACATG----------------------------------------------------------GA-----------C------GACAATTGGTCGACAATTTTCGTGA----------------------------------------CT----AAAGTTTT-------GTTTTGTT---TC----------------------------------------------TTCAATCC-ACCTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGATSizeHit CountTotal NormTotal
No Reads
droRho1
CAAAA-C-----CAAAAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTTAA---G-------------------CAG---------------------TGAAA-------------------TTAGA-------------A------AGAAAGATCCTTAAAA---AAATCTA---------------------------------------TAAA---------------------AA------------------------AAGT----------------GAA-A----AA---------------A-----T------------------------------GTGAAAGTT----------------------------------------------------------TT-----------AGAG---GATAT---TTG-TGAATTTTAGTGC----------------------------------------CT----AAAGTTTT-------GTTTTGT-TTTTA----------------------------------------------TTTAATCC-ACCCAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGGTSizeHit CountTotal NormTotal
No Reads
droBia1
CAAAA-C-----CAAGAA-------CCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATAGTTGA---C-------------------CAG---------------------TGGAG------AA--------------GA-------------GA------AAAAGATCCTTAAAA---TAATA-----------------------------------ACAC--GAAA-----------------------------------------------AAGTTA--------AAGTG-----------------------------------------------------------------TGAAAGTT----------------------------------------------------------AA-----------GAAC---GAGTT---TTG-TGAAAGGATGTGT----------------------------------------CT----ACATTTTT-------ATTT-GTTT--CC----------------------------------------------TTTCATCC-ACCTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGGTSizeHit CountTotal NormTotal
No Reads
droTak1
CAAAA-C-----CAACAA-------ACCAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTTGA---T-------------------CAG---------------------TGCAA------AAAAGAAGAAGAA-AAGA-------------A------AGAAATATCCTTAAAA---AAATCC----------------------------------------TCAG---------------------AG------------------------AAGT----------------GAT-A----AA---------------A-----C------------------------------GTGAAAGTT----------------------------------------------------------AA-----------AAAG---AATTT---TTC-CAAGATGTTGTGT----------------------------------------CT----AACTT-TT-------TTTG-GTTTCTCC----------------------------------------------TTTGATCC-ACACAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGATSizeHit CountTotal NormTotal
No Reads
droEug1
CAAAA-C-----CAAAAA-------CCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTTGA---T-------------------CAG---------------------TGCTA------AAAAAAAAACTAATTTAA-------------A------TTAAAGATCCTTAAAA---AATTTTG---------------------------------------TTAA---------------------AA------------------------ATAT----------------GAATA----AAAA--------------------------------------------------GTGAAAGTT----------------------------------------------------------AT-----------TATA---GTTA-TT-TTG-TGAAATTTTGTGC----------------------------------------CT----AAAACTT---G----ATTC-GA-TTTCA----------------------------------------------TTTAATCC-ATCTAGATTGCCGGCAAACGCAATCCCGAGATGGACAAGGAGGCCCAGGAATGGGTSizeHit CountTotal NormTotal
No Reads
dm3
CAAAAAC-----CAAGAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTCAA---T-------------------CAG---------------------TGAAG-------------------------------------AA------AAAAGATCCTTAAGA---AAACATAGATAT----------------------------AAAG--GAAA--AT------------------------------------------------AGATGAAAGAAATG-----------------------------------------------------------------TGAAA-TT----------------------------------------------------------AC-----------CAAA---CAGTT---TTG-TGAAATATTGTGC----------------------------------------CT----AAAAT---ATG----AATTT-TTTCTTA----------------------------------------------TCCGATCC-ACCTAGATTGCCAGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCCCGAGATGGACAAGGAGGCC...........2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAACATGTCTCTTGAGCGTGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCTTGAGCGTGCCGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GAGCGTGCCGTTCGTGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCAATCCCGAGATGGAC....................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT-TTTCTTA----------------------------------------------TCCGATCC-ACCTAG..................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGGAGGCCCAGGAGT....1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ATGTCTCTTGAGCGTGCCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CAAACATGTCTCTTGAGCGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GCGTGCCGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CTCTTGAGCGTGCCGTTCGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CTTGAGCGTGCCGTTCGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AACATGTCTCTTGAGCGTGCCGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CTCTTGAGCGTGCCGTTCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AGCGTGCCGTTCGTGCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAAGGAGGCCCAGGAGTG...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................A---T-------------------CAG---------------------TGAAG-------------------------------------AA------AAAAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCCGAGATGGACA...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CTTGAGCGTGCCGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAACATGTCTCTTGAGCGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAAGGAGGCCCAGGAGT....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TGTCTCTTGAGCGTGCCGTTCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAGGAGGCCCAGGAGTG...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCCGAGATGGACAAGGAG..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................ATGTCTCTTGAGCGTGCCGTTCGTGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CGTGCCGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGAGATGGACAAGGAGGCC...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GTCTCTTGAGCGTGCCGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ATGTCTCTTGAGCGTGCCGTTCGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ATGTCTCTTGAGCGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCGAGATGGACAAGGAGGC............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGGAGGCCCAGGAGTG...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CAGTT---TTG-TGAAATATTGTGC----------------------------------------CT----...........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................AGCGTGCCGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGGAGGCCCAGGAGTGGA.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATGGACAAGGAGGCG...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTT-TTTCTTA----------------------------------------------TCCGATCC-ACCTAG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................GATAT----------------------------AAAG--GAAA--AT------------------------------------------------AGATGA.................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCCGAGATGGACAAGGAGGCCC..........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CATGTCTCTTGAGCGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCAATCCCGAGATG.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAACATGTCTCTTGAGCGTGCCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGATGGACAAGGAGGCCC..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAATCCCGAGATGGACAAGGAGGCC...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AACATGTCTCTTGAGCGTGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAATCCCGAGATGGACAAGGA...............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GTCTCTTGAGCGTGCCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CAAACATGTCTCTTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TCTCTTGAGCGTGCCGTTCGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................GCGTGCCGTTCGTGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................A------AAAAGATCCTTAAGA---AAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............................AACATGTCTCTTGAGCGTGCCGTTCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGCGCAATCCCGAGATG.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TGTCTCTTGAGCGTGCCGTTCGTGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CAGTT---TTG-TGAAATATT.............................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................AACATGTCTCTTGAGCGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................AAACATGTCTCTTGAGCGTGCCGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGCCCAGGAGTGGAT2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTGAGCGTGCCGTTCGTGCCAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCAATCCCGAGATGGACAAGGA...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GTCTCTTGAGCGTGCCGTTCGTGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..................................TCTCTTGAGCGTGCCGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAGGAGGCCCA.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAGGAGGCCCAGGAGT....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GTGCCGTTCGTGCCAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................CATAGATAT----------------------------AAAG--GAAA--AT------------------------------------------------AG.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAGATGGACAAGGAG..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGATGGACAAGGAGGCC...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAGATGGACAAGGAGGC............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAGATGGACAAGGAGG.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAAAAA---AACCAAGAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTCAA---T-------------------CAG---------------------TGAAG-------------------------------------AA------AAAAGATCCTTAAGA---GAATACACAT------------------------------ACAC--GAAA--A-----------------------------------------------ATATATGCAAGAAATGTGAA-A------------------------------------------------------------------------------------------------------------------------------------------CAAA---GAGTT---TTG-TGAAATATTGTGC----------------------------------------CT----AAAGT---ATG----AATTT-TTTCTCA----------------------------------------------TCCGATCC-ACTTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCAATCCCGAGATGGACAAGGA...............2611.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCAAGCGCAATCCCGAGATG.......................2411.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCCGAGATGGACAAGGAGGC............2511.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCAAGCGCAATCCCGG...........................2011.00100100000000000000
.................A-------TCAAACATGTCTCTTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
................AA-------TCAAACATGTCTCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...................................CTCTTGAGCGTGCCGTTCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAATCCCGAGATGGA.....................1911.00100000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAGATGGACAAGGAGGC............2011.00100000000000100000
.....................................CTTGAGCGTGCCGTTCGTGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
..............................CATGTCTCTTGAGCGTGCCGTTCGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000100000
........................................GAGCGTGCCGTTCGTGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAAGGAGGCCCAGGAGTG...2311.00100000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGCGCAATCCCGAGATGGAC....................2411.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAGGAGGCCCAGG.......2011.00100100000000000000
................................TGTCTCTTGAGCGTGCCGTTCGTGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000100000
droSec2
CAAAAA---AACCAAGAA-------TCCAATGTGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACTCAA---T-------------------CAG---------------------TGAAG-------------------------------------AA------AGCGGATCCTTAAGA---AAACATACAC------------------------------ACAC--CAAA--A-----------------------------------------------TTATATGCAAGAAATGTGAA-A------------------------------------------------------------------------------------------------------------------------------------------CAAT---GAGTT---TTG-TGAAA---TGTGC----------------------------------------CT----AAAAT---ATG----ATTTT-TTTCTCA----------------------------------------------TCCGATCC-ACTTAGATTGCCGGCCAGCGCAATCCCGAGATGAACCAGGAGGCCCAGGAAGGGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................GAGCGTGCCGTTCGTGCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
................................TGTCTCTTGAGCGTGCCGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
............................................GTGCCGTTCGTGCCAAGGTG------AATAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.................................GTCTCTTGAGCGTGCCGTTCGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTCTCA----------------------------------------------TCCGATCC-ACTTAG..................................................2211.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT---TTG-TGAAA---TGTGC----------------------------------------CT----...........................................................................................................................................1811.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT---GAGTT---TTG-TGAAA---TGTG..........................................................................................................................................................................................2111.0010100
droYak3
CAAAA-CCAAA---CCAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACCCAA---T-------------------CAG---------------------TGAAA-------------------------------------AA------ATAAGATCCTTACGA---AAATATATGT--------------------ATACGAGTATACAC--GAAA--AT------------------------------------------------GGATTGAAGAAGTG-----------------------------------------------------------------TGAAATCT----------------------------------------------------------AA-----------CAAG---GAGCT---TTG-TGAAATGTTGTGC----------------------------------------CT----AAAGT---ATGCCTT---TT-TTTCTCAT----TCTTGA-----------------------------------AACGATCC-ACCTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......CCAAA---CCAA-------TCAAACATGTCTCTTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAAGGAGGCCCAGGAGTGGA.2511.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAAGCGCAATCCCGAGATGGACA...................2611.00100000010000
......CCAAA---CCAA-------TCAAACATGTCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCGAGATGGACAAGGAG..............2011.00100000010000
.....................................CTTGAGCGTGCCGTTCGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCAATCCCGAGATGGACAAGA................2511.00100000010000
............................AACATGTCTCTTGAGCGTGCCGTTCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.........AA---CCAA-------TCAAACATGTCTCTTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.............................ACATGTCTCTTGAGCGTGCCGTTCGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGA-----------------------------------AACGATCC-ACCTAG..................................................1911.00100000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAAGGAGGCCCA.........1811.00100000010000
.................................GTCTCTTGAGCGTGCCGTTCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAATCCCGAGATGGACAAGGA...............2511.00100000000001
..........................................................................................................................................................................................................................................ACAC--GAAA--AT------------------------------------------------GGATTGAAGAAGTG-----------------------------------------------------------------T.......................................................................................................................................................................................................................................................................................................2511.00100000010000
droEre2
CAAAA-C-----CAAGAA-------TCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGGTG------AATACCCAA---T-------------------CAG---------------------TGAAG-------------------------------------GA------ATAAGATCCTTACGA---GAATATACAT--------------------ATACTTGTATACAC--GACA--AT------------------------------------------------CG-----------GTGAA-AATCTAACAG--------------------------------------------------TGATCTCT----------------------------------------------------------AG-----------CAAT---GAGTT---GTG-TGAAATGTTGTGC----------------------------------------CT----AAACT---ATGCATA---TT-TTTCTCAT----TCCTGA-----------------------------------ATCGATTC-ATCTAGATTGCCGGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............GAA-------TCAAACATGTCTCTTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCGAGATGGACAAGGAGGC............2312.0020100010
.................................................GTTCGTGCCAAGGTG------AATACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
..............................CATGTCTCTTGAGCGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
................AA-------TCAAACATGTCTCTTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
................................TGTCTCTTGAGCGTGCCGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.................................GTCTCTTGAGCGTGCCGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GTG-TGAAATGTTGTGC----------------------------------------CT----AAACT---ATG................................................................................................................................2711.0010001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGGCCCAGGAGTGGA.2011.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAATCCCGAGATGGACAAGGAG..............2611.0010001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGCAAGCGCAATCCCGA...........................2111.0010001000
.......................................TGAGCGTGCCGTTCGTGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---GAGTT---GTG-TGAAATGTTGT...........................................................................................................................................................................................2211.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCCGAGATGGACAAGGAG..............2311.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAGATGGACAAGGAG..............1811.0010000010
......................................TTGAGCGTGCCGTTCGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.....................................CTTGAGCGTGCCGTTCGTGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
...........................AAACATGTCTCTTGAGCGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---GAGTT---GTG-TGAAATGTTGTGC----------------------------------------CT----AA.........................................................................................................................................2811.0010000100
...............................ATGTCTCTTGAGCGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.AAAA-C-----CAAGAA-------TCAAACATGTCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
........................................GAGCGTGCCGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
......................................TTGAGCGTGCCGTTCGTGCCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGGCCCAGGAGTGGAT2111.0010010000
.................................GTCTCTTGAGCGTGCCGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.................A-------TCAAACATGTCTCTTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCCGAGATGGACAAGGAGGC............2511.0010000010
....A-C-----CAAGAA-------TCAAACATGTCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000

Generated: 05/16/2015 at 08:38 PM