ID:

dvi_463

 Coordinate:

scaffold_12970:1870687-1870766 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.1 -33.1 -33.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CCA)nSimple_repeatSimple_repeat+

Sense Strand Reads

GCCAGCCTTGGGCCCAAGGCGGATGGCTGTGTATGTGGTGTTCTTTTTGGTGGTGGCTATGGCGGGGGTGGTGGCGGTGGCTGTGGTGTTTTTCGGCCACTAGATTTATATTATTAGCCAATGGTTGCCAGGATGAAACGGCAGAAATGCTGTATTTGCAGTTGTTGTTGTTGTTGTTGT
***********************************...((((.((((...(((((((((((((...(((((((..((((((((.((....)).)))))))).......))))))).))).))))))))))....)))).))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V047
embryo
 M061
embryo
 V053
head
 V116
male body		 SRR060661
160x9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 SRR060666
160_males_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060656
9x160_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
.................................................CTGGTGGCTATGGCGGGG................................................................................................................. 18 1 1 130.00 130 81 3 39 3 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGG................................................................................................................ 19 1 1 90.00 90 5 54 22 8 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGA................................................................................................................ 18 1 1 70.00 70 69 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGGGG.............................................................................................................. 21 2 1 65.00 65 0 63 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGA................................................................................................................ 19 2 3 59.67 179 123 25 14 1 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGAG............................................................................................................... 18 2 8 31.00 248 231 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CCTGGTGGCTATGGCGGGGG................................................................................................................ 20 2 1 29.00 29 0 19 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGGG............................................................................................................... 20 2 1 23.00 23 9 5 8 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGAG............................................................................................................... 19 2 2 19.00 38 35 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGG................................................................................................................ 18 0 1 19.00 19 6 8 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CCTGGTGGCTATGGCGGGGGGG.............................................................................................................. 22 3 1 16.00 16 0 14 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGGGGG............................................................................................................. 22 2 1 15.00 15 0 14 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................ACCTGGTGGCTATGGCGGGGG................................................................................................................ 21 3 3 13.67 41 2 20 5 12 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTACCTGGTGGCTATGGCGGGG................................................................................................................. 22 3 1 13.00 13 1 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGGGG.............................................................................................................. 18 1 1 12.00 12 0 6 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGGGA.............................................................................................................. 21 3 4 10.25 41 10 26 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGGGG.............................................................................................................. 19 1 1 10.00 10 0 4 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGGGG.............................................................................................................. 20 1 1 8.00 8 0 5 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTACCTGGTGGCTATGGCGGGGG................................................................................................................ 23 3 1 8.00 8 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTACCTGGTGGCTATGGCGGG.................................................................................................................. 21 3 2 7.50 15 0 0 13 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGGGA.............................................................................................................. 20 2 2 7.00 14 6 5 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................CCTGGTGGCTATGGCGGGG................................................................................................................. 19 2 3 6.67 20 14 0 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CCTGGTGGCTATGGCGGGGGGGG............................................................................................................. 23 3 1 6.00 6 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGGGGG............................................................................................................. 21 1 1 5.00 5 1 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGGGGG............................................................................................................. 20 1 1 5.00 5 1 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGG................................................................................................................ 17 0 1 5.00 5 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTACCTGGTGGCTATGGCGG................................................................................................................... 20 3 6 4.67 28 0 0 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGGGAG............................................................................................................. 22 3 3 4.33 13 3 8 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGGG............................................................................................................... 18 1 2 4.00 8 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGGGAG............................................................................................................. 21 2 2 3.00 6 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGAGG.............................................................................................................. 21 3 3 3.00 9 2 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGGC............................................................................................................... 20 2 3 2.67 8 0 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGGGGC............................................................................................................. 22 3 2 2.50 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGGGGC............................................................................................................. 19 2 2 2.00 4 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGGC............................................................................................................... 19 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGGGGC............................................................................................................. 20 2 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGGGGG............................................................................................................. 19 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGGTA.............................................................................................................. 21 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CCTGGTGGCTATGGCGGGGGG............................................................................................................... 21 3 2 1.50 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATTGCGGGGG................................................................................................................ 19 2 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGAGGG............................................................................................................. 22 3 3 1.33 4 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGG................................................................................................................ 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGGG............................................................................................................... 17 1 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGGGGGG............................................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGGGC.............................................................................................................. 21 3 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TTCCTGGTGGCTATGGCGGGG................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................AAGTGGTGTTCTTATTGGTGG............................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGGGGGG............................................................................................................ 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGC................................................................................................................ 19 2 3 1.00 3 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGA................................................................................................................ 17 1 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTATCTGGTGGCTATGGCGGGGG................................................................................................................ 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GAGGTGGCTATGGCGGGGA................................................................................................................ 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CGTAAGTGGTGTTCTTATTGGT................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGT................................................................................................................ 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGAGG.............................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTCGTGGCTATGGCGGGG................................................................................................................. 18 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGGGGCT............................................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGCT............................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGG................................................................................................................. 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................GTGGTGTTCTTATTGGTGG............................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGGGT.............................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGGTGTT............................................................................................................ 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CGTAAGTGGTGTTCTTATTGGTG................................................................................................................................ 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GGCTATGGCGGGGGGGG............................................................................................................. 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GTGGTGGCTATGGCGGGGGGAG............................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGAGGG............................................................................................................. 20 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CAATGGTCGCAAGGCTGAAAC......................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................GTGGTGGCTATGGCGGGGG................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATTGCGGGGGGG.............................................................................................................. 21 3 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGAGGG............................................................................................................. 19 2 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGAGG.............................................................................................................. 19 2 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGATA.............................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................ACCTGGTGGCTATGGCGGGGGTG.............................................................................................................. 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGTGGAGGG............................................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTCTGGCGGGGGGGG............................................................................................................. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGGGGA............................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GGCTATGGCGGGGGGG.............................................................................................................. 16 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTACCTGGTGGCTATGGCG.................................................................................................................... 19 3 14 0.50 7 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGTGGGGGG............................................................................................................. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CCTGGTGGCTATGGCGGGGGAG.............................................................................................................. 22 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGAGG.............................................................................................................. 18 2 6 0.50 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGGCG.............................................................................................................. 18 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATTGCGGGGA................................................................................................................ 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TGTCCTGGTGGCTATGGCGGG.................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGAAGG............................................................................................................. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CGGGTGGCTATGGCGGGGG................................................................................................................ 19 2 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CGGGTGGCTATGGCGGGG................................................................................................................. 18 2 8 0.38 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCAGGGG................................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGGGGGGTGC......................................................................................................... 24 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGGGGGC............................................................................................................ 20 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GTGGTGGCTATGGCGGGGAGA.............................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATTGCGGGGGGGC............................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGA................................................................................................................ 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCTGGGGGG.............................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGAGGT............................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGGGAA.............................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTAGTGGCTATGGCGGGG................................................................................................................. 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AGTGGTGTTCTTATTGGT................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATTGCGGGGGGGG............................................................................................................. 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGGGTG............................................................................................................. 20 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGTGGTG.............................................................................................................. 21 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCAATGGCGGGGA................................................................................................................ 18 2 13 0.23 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATTGCGGGGA................................................................................................................ 19 3 18 0.22 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATTGCGGGGGGG.............................................................................................................. 18 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTTGCTATGGCGGGG................................................................................................................. 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGCGGCTATGGCGGGGG................................................................................................................ 18 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CGGGTGGCTATGGCGGGGGGG.............................................................................................................. 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGCG................................................................................................................ 19 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCCATGGCGGGG................................................................................................................. 18 2 12 0.17 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0
..................................................TTGTGGCTATGGCGGGGAGG.............................................................................................................. 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGTCTATGGCGGGGGGGG............................................................................................................. 19 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCAATGGCGGGGG................................................................................................................ 17 1 12 0.17 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCAATGGCGGGGG................................................................................................................ 18 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AATGGTTGCAAGGCTGAAA.......................................... 19 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TTGGTGGCTATGGCGAGGGGG.............................................................................................................. 21 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGGTCGCAAGGATGAAA.......................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGAGA............................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGGGT.............................................................................................................. 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCAATGGCGGGG................................................................................................................. 17 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCCATGGCGGGGA................................................................................................................ 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................CTCGTGGCTATGGCGGGGA................................................................................................................ 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCCATGGCGGGGG................................................................................................................ 19 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGTGGCTATGGCGGGGAGG.............................................................................................................. 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CCTGGTGGCTATGGCGGGGGC............................................................................................................... 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CGGTGGCTATGGCGGGGA................................................................................................................ 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GGCTATGGCGGGGGGGGGTGC......................................................................................................... 21 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CGGGTGATGGCGGTGGTTGTGG.............................................................................................. 22 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AATGGTCGCAAGGCTGAAAC......................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................TTGGTGGCTATGGCGGGGAG............................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTGTGGCGGGGG................................................................................................................ 19 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTATGGCGGGGAGTG............................................................................................................. 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGGCTCTGGCGGGGGG............................................................................................................... 18 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................GTAAGTGGTGTTCTTATT.................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................GGCTATGGCGGGGGGGGAGA.......................................................................................................... 20 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................GATCTCTTTGGTGGTGGC........................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................CTGGTGGCTATGGCGGGC................................................................................................................. 18 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGTGGCTATTGCGGGGGC............................................................................................................... 20 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCTATGGCGGGGTGA.............................................................................................................. 20 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................ATGGCGGGGGTAGTGGGGGC...................................................................................................... 20 3 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CTATGGCGGGGGGGTTGCC......................................................................................................... 19 3 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TGGCGGGGGGGGTCTCGGTG..................................................................................................... 20 3 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGTGGCTATGGCGGGGAG............................................................................................................... 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGGCAATGGCGGGGGGT.............................................................................................................. 20 3 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTGGGGGCTATGGCGGGGA................................................................................................................ 19 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGAGGC............................................................................................................. 19 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGGTCGCGAGGCTGAAAC......................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................GTGGCTATGGAGGGGGGG.............................................................................................................. 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TCCTGGTGTCTATGGCGG................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................TGGCGGGGGAGGTTGCG........................................................................................................ 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GGCTATGGCGGGGGGGC............................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGGCTATGGCGGGGGGGGGT........................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTATCTGGTGGCTATGGCG.................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGGCTATGGCGGGGGGTGC............................................................................................................ 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGGTCGCAAGGTTGAAAC......................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................GTGGCTATGTCGGGAGAG.............................................................................................................. 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGGTCGGAACCCGGGTTCCGCCTACCGACACATACACCACAAGAAAAACCACCACCGATACCGCCCCCACCACCGCCACCGACACCACAAAAAGCCGGTGATCTAAATATAATAATCGGTTACCAACGGTCCTACTTTGCCGTCTTTACGACATAAACGTCAACAACAACAACAACAACA
***********************************...((((.((((...(((((((((((((...(((((((..((((((((.((....)).)))))))).......))))))).))).))))))))))....)))).))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 SRR060668
160x9_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060672
9x160_females_carcasses_total
 M047
female body
 SRR060687
9_0-2h_embryos_total
 SRR1106720
embryo_8-10h
 V053
head
................................................................CCCCACAATCTCCACCGACACC.............................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGGTTACCAACGGTCCGA.............................................. 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAACGTCAACAACAACAACAACAAC. 25 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
..................................................ACCACCGCTACCGCCCCT................................................................................................................ 18 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................AAACGTCAACAACAACAACAA..... 21 0 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0
................................................CCTCAAACGATACCGCCCC................................................................................................................. 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................GTTCCAATCGGTCCTACTTT.......................................... 20 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................ACGTCAACAACAACA......... 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................AACGTCAACAACAACAACAAC.... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
..................................................ACCACGGCTACCGGCCCCA............................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
..................................................ACCACCTCTACCGCCCC................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:1870637-1870816 - dvi_463 GC-CAGCCTTG---GGCCCA------AGGCGGATGGCTGTGTATG--------------------------TGGTGT-------TCTTTT------------------TGG-----------------------------------------------------------------------------TGGT--------------GGCTATGGCGGGGGT---------------GGTGGCGG------------------------------------------------------------------------------------------------------TGGCTG-------------------------TGGTGTTT----------------------------------------------------------------TTCGGCCACTAGATTTATATTATT------AGCCAATGGTTG------------CCAGGATGAAACGGCA--------------------------------------------------------------------------------------------------G--AAATGCTGTATTTGCAGTTGTTGTTGTTGTTGTTGT
droMoj3 scaffold_6540:14211847-14212008 - GC-CTGCGGTT---GGCTTC------ACAAGCGTGGGCGTCAGTG-------------------------------TTGTGG--TCACTT------------------TC-------------------------------------------------------------------------------------------TTGTTGGCCGTGCTGGTGAT---------------GGTGCTCTTGA------------------------------------------------------------TTGTTGTG------------CTC------------------------------------------------------------GTTGCTGCTGTTACAG--------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGCTGTCACTGTG-----------CTGCTGCATGTGGTTGCAGTTGATGCTGTTGTTGTTGT
droGri2 scaffold_15081:1588947-1589102 - AT-CAGCCTTG---GGCCAA------AGAC-------------------------------------------------------------------------------------------------------------GATT----------------------------------------------------GCTGC------TGCTACGGC------------------------------------------------------------------------------TACTGC---TGC------TGCTGTTGCTGTTGCTGCTGCT------------------G------------------------------------------------TT--------------------------------------GTCTTGTTTTTCGGGCACCAAATTTATATTATT------AGCCAATTGTTGTTGC-------GCCATGATGAAACGGCA-----------------------------------------------------------------------------------------------------------------------TAAAGTTGCTGTTGTTGT
droWil2 scf2_1100000004590:1032207-1032351 - GC-CATGGGCA---T-----------GGGCATGGGGAT----------------------------------------------GGGTAT------------GGGTATGGGTA------------------------------TG--------------------------------------------------------------------GT---------------------------------------------------------------------------------------------------G------------GTT---------------------------------------------------------GTTGTTGTTGTGGTTG-----------------------GTGTGATGGTTGTTGTTT-------TG-------------TT-----------------CAGCAGGCCCCTCATTTGGGAGGAC----------------------------------------------------------------------------------------------------------------GGCATTGGTTTGTTGTTGTTGTTGTTGTTGATGT
dp5 XR_group3a:802519-802683 + GA-GCC--TGG---------------TGGCATGTGGCC----------------------------GGAGCTGGAGC-------TGATGT------------------TAT--------------------------------------------------------------------------------TTGCGCTGT------GGCTGTGGCTGTGG------------------------------------------------------------------------------------------------------------------------------------TGGTTTT------------------------------------------------------------------------------------------GGTGGCTGTGGTGGCTATGGTG--GTTTTG-------------------------------------------------------------------------------TTGGTTGTTGTTCTGGGCATTACCATA--ATTGAT-----------------------------CGATTGCTGCTGCTGCTGCTGCTGCTGTTGCTGC
droPer2 scaffold_13:85415-85554 - GA-TGGTTGT--------------------------------------------------------------------------------------------GGCTGTGGCTG------------------------------TGGTGATGCTG-----------------------A----------TGCT--------GA-------------------------------------------------------------------------------------------------------------TGGTGGTGCTGTAGTT------------------------GTAGTTGTA----------------GTGTATTTGCTA--------------------------------------------------------------------------CTGGTATTACT--------------------------------------------------------------GG--------------------------------------------TGCT---A----------GT------GCTGCTACT----GAATGTTGCTGCTGCTGTTGTTGTTGTTGTTGTTGT
droAna3 scaffold_13047:1323355-1323488 + GA-G--CCTTG---G--------------------------------------------------------------------------------------------------------------------AATCTGAC----TGCTGCTGCT-----------------------GCTG-------CTGCT------------------------GCT------------------------------------------------------------------------------------------------------------------------------------GTCGTTAT------------------------------------------------------------------------------------------TTTGGCCACAAAATTTATATTATT------AGCCAATTGTTATTGT---------------------------------------------------------------------------------------------------------------GGTTGCTATT-G--CTGTGTTGCAGTTGCAGTTGCCGCTGCCATTGCAGT
droBip1 scf7180000396022:4331-4526 + GT-TGCACTTG---C---------------------------------------------------------------------------------------TGCCGCCGCTGCTGC--------------------------------------------------------------------------TTGCGCTGC---------------------------------------------------------------------------------------------TGCTGCTGCTTGTGCTGCTGCTGCTGCTGCGGCT------------------------GTGCTTGT------------------------------------------------------------------------------------------TTTGGACATGCTGCTGGCGTCGCT--------------------------------------------------------------GCCAACGCTGGCGTTGCTTGGACTTCGGC------------TGC------------GACGACGGCTGCGGCGGCTGCTTTTCG--AGCTGCTGCTGTTGCGGCTGTTATTGTTGTTGTTAT
droKik1 scf7180000302577:1042550-1042719 + GC-TGGGCTCG---C---------------------------------------------------------------------------------------TGTTGCTGTTGCTGG--------------------------------------------------------------------------TGGTGTTGT---------------------------------------------------------------------------------------------------------------TGTTGTTGTTGCTGTTGTTGCT------------------------------------------------------------------------GTTGTAGCTGTTGGTATGTGGGCGTTATGGCCGCTGTGT--------------------TGTA-----------------TTGCTGGTGTTGTATGGGTGGCGGTGGCAGGGTC-----------------------------------------------------------------------------------------------------TGTTGCTGCTGTTGCAGATAGTGTTGGTGTTGTTGC
droFic1 scf7180000454073:1162021-1162228 - GA-GTCAGAGT--------TGAG----------TGGATTTG--AGTTTAGTTGAATTCAGTTGAGTTGAGTT-------------------------------------------GAAGCAACAACCTTGGAACGAGACGGTT----------------------------------------------------GCT------------------GCT------------------------------------------------------------------------------------------------------------------------------------GTCGTTAC------------------------------------------------------------------------------------------TTTGGCCACAAAATTTATATTATT------AGCCAATTGTTGCTGCGGTGCAGGCCATGATGAAACGGCTCACTGCTGGTGTTGCTGT--------------------------------------------------------------------------------------TGTTGCTAGTGTTTCTGGTGTTGCTGCTGCTGC
droEle1 scf7180000491255:2474490-2474677 + GC-TGTTTTTGCAAGGCCAA------AGACATATGGCTCTGAATGATTTGTTGACCTTG-------------------------------------------GGCTGTGGATG------------------------------TGTTAATGACGTGCCGCTGGGTTATGACTTGTTGTCCAGGTTGA----GGTTGTTG--------------CTGA-GC---------------------------------------------------CAAGACTTGTTGTTGCTGCTGTTGTTGC---TGC------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTTGTTGTTGCTGCTGCTGTTGTTGTTGCTGC
droRho1 scf7180000777200:244337-244498 - TTGCAGCGCTG---CGATGA------GTGAG--TATCT----------------------------GTG-TGCGAGT---GGGTGGGTGATAGTATGGGTGTTGCTGCGGGGA------------------------------TGT------------------------------------------------------------------GGCTGCGG----------------------------------------------------------------------------------------------------------GGTTGTTGCTGCGGGG-------------------------------------------------ATGTTGCTGTTAGCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAACAGACGGCTGAT-----------------------------AAGCTGCTGCTGCCGCTGCTGTTGCTGTTGCTGT
droBia1 scf7180000302428:2922068-2922253 + GC-CAGCTGGG---C--GG-------CATGATGTTGCT-----------------------------------------------------------------GCT----------------------------------------------------------------------GTGCATGTTGC----TGTTGCTGG---------------------------------------------------------------------------------------------TGCTGCTGGTGGTGTTGCTGCTGCTGCTGCTGCT------------------------GTTGTTGCTGGTGTGTATGATGCGG---------------ATGCA--------GC--------------------G-------------------------------GATGGCCATGATG--TTGCTG-------------------------------------------------------------------------------CTGGGC--------------------------------------------GTGATGTTGG--GAGTGCTGCTGTTGCTGCTGCTGCTGTTGCTGTTGC
droTak1 scf7180000415313:325335-325503 + GC-AACACAAT-----------------------GGGT--------------------------------------------------------------CTGGCGACCGCAA------------------------------TGTTGCTGCC-----------------------GTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTGGATGTTGCCGG-------------------------TGGAGCAGCAGCAGAAACAACAGTTGCCG-----GCTACTG-----------------------------------------------GCA-----------AGCGATTTGTCG----------------------------------------------------------------------------------TTTGCCTTTGAT---A----------AT------ACTGCCCCT----TGATGATGTTGTTGCAGCTGTTGTTGGTGTTGCTGC
droEug1 scf7180000407691:102257-102440 - CT-TTGGGAAT--------AGGGCGATACT-----------GGCGATTTATTGGCATTC--------------------------------------------------------------------GTGGAGCAATTTGAGG----------------------------------------------------G----------CACCACGGCGGCGGTGGTGCAGCTGGTCAAGGTGCTGGTGGCCGAACTGGAGGATGATGATGATGAGGAGCAGGATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGAGGAGGAT--------------------------------------------------------------------------------------------------G--AGCTGCTGCTGTTGTTGTTGTTGGTGCTGTTGCTGT
dm3 chr3R:911446-911619 + AC-CTGCGTTT--GGGTCGC------CGCCGCATGGCT----------------------------GTGGCGCGAGT-------TGCTGC------------------TGC-----------------------------------------------------------------------------TGCT--------GGTGTT------GGCGG-GCT---------------GGTGGTGA------------------------------------------------------------------------------------------------------TGGCGG-------------------------TGGTGTTGCTGCTGCTGCTGCTGTTGCAGCAACTGCTGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGGCAGCCACGGCG-----------GC--GTGGTACATGTGTTGCTGCTGCTGCTGGTGATGA
droSim2 3r:818520-818685 + TT-GGGTC--G--------C------CGCCGCATGGCT----------------------------GTGGCGCGAGT-------TGCTGC------------------TGC-----------------------------------------------------------------------------TGCT--------GGTGTT------GGCGG-GCT---------------GGTGGTGA------------------------------------------------------------------------------------------------------TGGCGG-------------------------TGGTGTTGCTGCTGCTGCTGCTGTTGGAGCAACTGCTGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGGCAGCCACGGCG-----------GC--GTGGTACATGTGTTGCTGCTGCTGCTGGTGGTGA
droSec2 scaffold_2:6661087-6661230 + TC-CGGCACTG---CAG---------TTGCCTGTTGCT----------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTATAGTTATGGTTAAGTTGTGCCTGCTGT---------TGCTGGTAGTTGAGTTGTTGCGGCGGTTGCTGTTGTTGTT------------------------GC------------------------------------------TGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTGCGCCTGCGTTTGCTGCTGCTGATGCTGT
droYak3 X:6429088-6429219 + CG-TGTGGTTG---T---------------------------------------------------------------------------------------TGCTGTTGTTGTTGT--------------------------------------------------------------------------TGGTGCTGT---------------------------------------------------------------------------------------------------------------TGTGGTGGCTGTTGTAATTGTT------------------G-------------------------TTGTTTTTCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTCTCGTA---TTAAA------------CGGTTGCTTTT-----GTTGTGGCAGTGATAGTTGCTGTTGTTGTTGTTGT
droEre2 scaffold_4690:13085099-13085292 - AG-CTGCGCTG---AGCTG----------CGCTGAGCT----------------------------GAGTGGAGTGT-------TGCTGT------------------TGCTGTTGCACAAACAGCCTTGAAACGAGACGATT----------------------------------------------------GC---------------------------------------------------------------------------------------------------------TGCCGCTGCCGCTGTTGCT------GCCGCT------------------GTCGTTAC------------------------------------------------------------------------------------------TTTGGCCACAAAATTTATATTATT------AGCCAATTGTTGCTGCGGTGCAGGCCATGATGAAACGGCA-----------------------------------------------------------------------------------------------------AA------------CAGTTGCTG---C--TCGGTGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GC-CAGCCTTG---GGCCCA------AGGCGGATGGCTGTGTATG--------------------------TGGTGT-------TCTTTT------------------TGG-----------------------------------------------------------------------------TGGT--------------GGCTATGGCGGGGGT---------------GGTGGCGG------------------------------------------------------------------------------------------------------TGGCTG-------------------------TGGTGTTT----------------------------------------------------------------TTCGGCCACTAGATTTATATTATT------AGCCAATGGTTG------------CCAGGATGAAACGGCA--------------------------------------------------------------------------------------------------G--AAATGCTGTATTTGCAGTTGTTGTTGTTGTTGTTGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................TGGT--------------GGCTATGGCGGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................18170.00700069000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................GGT--------------GGCTATGGCGGGGAG---------------....................................................................................................................................................................................................................................................................................................................................................................................................................................18831.00248002311700000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TGGT--------------GGCTATGGCGGGGAG---------------....................................................................................................................................................................................................................................................................................................................................................................................................................................19219.00380035300000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TGGT--------------GGCTATGGCGGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................18119.0019006100000000000000000000000000000000000000000000000000000008400
............................................................................................................................................................................................TGGT--------------GGCTATGGCGGGGGG---------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................2027.0014006000000000200000000000000000000000000000000000000000000005100
.............................................................................................................................................................................................GGT--------------GGCTATGGCGGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................1715.005000000000000000000000000000000000000000000000000000000000000500
.............................................................................................................................................................................................GGT--------------GGCTATGGCGGGGGG---------------....................................................................................................................................................................................................................................................................................................................................................................................................................................1824.008007000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................TGGT--------------GGCTATGGCGGGGGC---------------....................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000200
..............................................................................................................................................................................................GT--------------GGCTATGGCGGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................GT--------------GGCTATGGCGGGGGG---------------....................................................................................................................................................................................................................................................................................................................................................................................................................................1721.002000000000000000000000000000000000000000000000000000000000000200
.............................................................................................................................................................................................GGT--------------GGCTATGGCGGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1721.002000000000000000000000000000000000000000000000000000000000000200
............................................................................................................................................................................................TGGT--------------GGCTATGGCGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................TGGT--------------GGCTATGGCGGGGGG---------------T...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................G-----------------------------------------------------------------------------TGGT--------------GGCTATGGCGGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................G-----------------------------------------------------------------------------TGGT--------------GGCTATGGCGGGGAG---------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................2130.331001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GT--------------GGCTATGGCGGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1630.331000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................GT--------------GGCTATGGCGGGGGG---------------T...................................................................................................................................................................................................................................................................................................................................................................................................................................1870.141000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................TGGT--------------GGCTATGGCGGGGTG---------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071000000000000000000000000000000000000000000000000000000000001000
droMoj3
GC-CTGCGGTT---GGCTTC------ACAAGCGTGGGCGTCAGTG-------------------------------TTGTGG--TCACTT------------------TC-------------------------------------------------------------------------------------------TTGTTGGCCGTGCTGGTGAT---------------GGTGCTCTTGA------------------------------------------------------------TTGTTGTG------------CTC------------------------------------------------------------GTTGCTGCTGTTACAG--------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGCTGTCACTGTG-----------CTGCTGCATGTGGTTGCAGTTGATGCTGTTGTTGTTGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AT-CAGCCTTG---GGCCAA------AGAC-------------------------------------------------------------------------------------------------------------GATT----------------------------------------------------GCTGC------TGCTACGGC------------------------------------------------------------------------------TACTGC---TGC------TGCTGTTGCTGTTGCTGCTGCT------------------G------------------------------------------------TT--------------------------------------GTCTTGTTTTTCGGGCACCAAATTTATATTATT------AGCCAATTGTTGTTGC-------GCCATGATGAAACGGCA-----------------------------------------------------------------------------------------------------------------------TAAAGTTGCTGTTGTTGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GC-CATGGGCA---T-----------GGGCATGGGGAT----------------------------------------------GGGTAT------------GGGTATGGGTA------------------------------TG--------------------------------------------------------------------GT---------------------------------------------------------------------------------------------------G------------GTT---------------------------------------------------------GTTGTTGTTGTGGTTG-----------------------GTGTGATGGTTGTTGTTT-------TG-------------TT-----------------CAGCAGGCCCCTCATTTGGGAGGAC----------------------------------------------------------------------------------------------------------------GGCATTGGTTTGTTGTTGTTGTTGTTGTTGATGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
GA-GCC--TGG---------------TGGCATGTGGCC----------------------------GGAGCTGGAGC-------TGATGT------------------TAT--------------------------------------------------------------------------------TTGCGCTGT------GGCTGTGGCTGTGG------------------------------------------------------------------------------------------------------------------------------------TGGTTTT------------------------------------------------------------------------------------------GGTGGCTGTGGTGGCTATGGTG--GTTTTG-------------------------------------------------------------------------------TTGGTTGTTGTTCTGGGCATTACCATA--ATTGAT-----------------------------CGATTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GA-TGGTTGT--------------------------------------------------------------------------------------------GGCTGTGGCTG------------------------------TGGTGATGCTG-----------------------A----------TGCT--------GA-------------------------------------------------------------------------------------------------------------TGGTGGTGCTGTAGTT------------------------GTAGTTGTA----------------GTGTATTTGCTA--------------------------------------------------------------------------CTGGTATTACT--------------------------------------------------------------GG--------------------------------------------TGCT---A----------GT------GCTGCTACT----GAATGTTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GA-G--CCTTG---G--------------------------------------------------------------------------------------------------------------------AATCTGAC----TGCTGCTGCT-----------------------GCTG-------CTGCT------------------------GCT------------------------------------------------------------------------------------------------------------------------------------GTCGTTAT------------------------------------------------------------------------------------------TTTGGCCACAAAATTTATATTATT------AGCCAATTGTTATTGT---------------------------------------------------------------------------------------------------------------GGTTGCTATT-G--CTGTGTTGCAGTTGCAGTTGCCGCTGCCATTGCAGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GT-TGCACTTG---C---------------------------------------------------------------------------------------TGCCGCCGCTGCTGC--------------------------------------------------------------------------TTGCGCTGC---------------------------------------------------------------------------------------------TGCTGCTGCTTGTGCTGCTGCTGCTGCTGCGGCT------------------------GTGCTTGT------------------------------------------------------------------------------------------TTTGGACATGCTGCTGGCGTCGCT--------------------------------------------------------------GCCAACGCTGGCGTTGCTTGGACTTCGGC------------TGC------------GACGACGGCTGCGGCGGCTGCTTTTCG--AGCTGCTGCTGTTGCGGCTGTTATTGTTGTTGTTATSizeHit CountTotal NormTotal
No Reads
droKik1
GC-TGGGCTCG---C---------------------------------------------------------------------------------------TGTTGCTGTTGCTGG--------------------------------------------------------------------------TGGTGTTGT---------------------------------------------------------------------------------------------------------------TGTTGTTGTTGCTGTTGTTGCT------------------------------------------------------------------------GTTGTAGCTGTTGGTATGTGGGCGTTATGGCCGCTGTGT--------------------TGTA-----------------TTGCTGGTGTTGTATGGGTGGCGGTGGCAGGGTC-----------------------------------------------------------------------------------------------------TGTTGCTGCTGTTGCAGATAGTGTTGGTGTTGTTGCSizeHit CountTotal NormTotal
No Reads
droFic1
GA-GTCAGAGT--------TGAG----------TGGATTTG--AGTTTAGTTGAATTCAGTTGAGTTGAGTT-------------------------------------------GAAGCAACAACCTTGGAACGAGACGGTT----------------------------------------------------GCT------------------GCT------------------------------------------------------------------------------------------------------------------------------------GTCGTTAC------------------------------------------------------------------------------------------TTTGGCCACAAAATTTATATTATT------AGCCAATTGTTGCTGCGGTGCAGGCCATGATGAAACGGCTCACTGCTGGTGTTGCTGT--------------------------------------------------------------------------------------TGTTGCTAGTGTTTCTGGTGTTGCTGCTGCTGCSizeHit CountTotal NormTotal
No Reads
droEle1
GC-TGTTTTTGCAAGGCCAA------AGACATATGGCTCTGAATGATTTGTTGACCTTG-------------------------------------------GGCTGTGGATG------------------------------TGTTAATGACGTGCCGCTGGGTTATGACTTGTTGTCCAGGTTGA----GGTTGTTG--------------CTGA-GC---------------------------------------------------CAAGACTTGTTGTTGCTGCTGTTGTTGC---TGC------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTTGTTGTTGCTGCTGCTGTTGTTGTTGCTGCSizeHit CountTotal NormTotal
No Reads
droRho1
TTGCAGCGCTG---CGATGA------GTGAG--TATCT----------------------------GTG-TGCGAGT---GGGTGGGTGATAGTATGGGTGTTGCTGCGGGGA------------------------------TGT------------------------------------------------------------------GGCTGCGG----------------------------------------------------------------------------------------------------------GGTTGTTGCTGCGGGG-------------------------------------------------ATGTTGCTGTTAGCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAACAGACGGCTGAT-----------------------------AAGCTGCTGCTGCCGCTGCTGTTGCTGTTGCTGTSizeHit CountTotal NormTotal
No Reads
droBia1
GC-CAGCTGGG---C--GG-------CATGATGTTGCT-----------------------------------------------------------------GCT----------------------------------------------------------------------GTGCATGTTGC----TGTTGCTGG---------------------------------------------------------------------------------------------TGCTGCTGGTGGTGTTGCTGCTGCTGCTGCTGCT------------------------GTTGTTGCTGGTGTGTATGATGCGG---------------ATGCA--------GC--------------------G-------------------------------GATGGCCATGATG--TTGCTG-------------------------------------------------------------------------------CTGGGC--------------------------------------------GTGATGTTGG--GAGTGCTGCTGTTGCTGCTGCTGCTGTTGCTGTTGCSizeHit CountTotal NormTotal
No Reads
droTak1
GC-AACACAAT-----------------------GGGT--------------------------------------------------------------CTGGCGACCGCAA------------------------------TGTTGCTGCC-----------------------GTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTGGATGTTGCCGG-------------------------TGGAGCAGCAGCAGAAACAACAGTTGCCG-----GCTACTG-----------------------------------------------GCA-----------AGCGATTTGTCG----------------------------------------------------------------------------------TTTGCCTTTGAT---A----------AT------ACTGCCCCT----TGATGATGTTGTTGCAGCTGTTGTTGGTGTTGCTGCSizeHit CountTotal NormTotal
No Reads
droEug1
CT-TTGGGAAT--------AGGGCGATACT-----------GGCGATTTATTGGCATTC--------------------------------------------------------------------GTGGAGCAATTTGAGG----------------------------------------------------G----------CACCACGGCGGCGGTGGTGCAGCTGGTCAAGGTGCTGGTGGCCGAACTGGAGGATGATGATGATGAGGAGCAGGATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGAGGAGGAT--------------------------------------------------------------------------------------------------G--AGCTGCTGCTGTTGTTGTTGTTGGTGCTGTTGCTGTSizeHit CountTotal NormTotal
No Reads
dm3
AC-CTGCGTTT--GGGTCGC------CGCCGCATGGCT----------------------------GTGGCGCGAGT-------TGCTGC------------------TGC-----------------------------------------------------------------------------TGCT--------GGTGTT------GGCGG-GCT---------------GGTGGTGA------------------------------------------------------------------------------------------------------TGGCGG-------------------------TGGTGTTGCTGCTGCTGCTGCTGTTGCAGCAACTGCTGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGGCAGCCACGGCG-----------GC--GTGGTACATGTGTTGCTGCTGCTGCTGGTGATGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........TT--GGGTCGC------CGCCGCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGC-----------------------------------------------------------------------------TGCT--------GGTGTT------GGCGG-GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGA------------------------------------------------------------------------------------------------------TGGCGG-------------------------TGGTGTTGCTG............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................TGA------------------------------------------------------------------------------------------------------TGGCGG-------------------------TGGTGTTGC..............................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................C-----------------------------------------------------------------------------TGCT--------GGTGTT------GGCGG-GCT---------------GC..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................TGGCT----------------------------GTGGCGCGAGT-------TGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGCG-----------GC--GTGGTACATGTG......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................T--------GGTGTT------GGCGG-GCT---------------GGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................C-----------------------------------------------------------------------------TGCT--------GGTGTT------GGCGG-GCT---------------GG..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................TGGCT----------------------------GTGGCGCGAGT-------TGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................GTGA------------------------------------------------------------------------------------------------------TGGCGG-------------------------TGGTGTTGT..............................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTGTTGCAGCAAC......................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTGCTGCTGTTG.............................................................................................................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CGG-GCT---------------GGTGGTGA------------------------------------------------------------------------------------------------------TC....................................................................................................................................................................................................................................................................................................................1640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TGCTGC------------------TGC-----------------------------------------------------------------------------TGCT--------GGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................GC-----------------------------------------------------------------------------TGCT--------GGTGTT------GGCGG-A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................T-------TGCTGC------------------TGC-----------------------------------------------------------------------------TGCT--------GGTGTT------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCTGCTGGTGATG.20140.0710000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TGGTGTTGCTGCTGCTGCTGCT.................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGCTGCTGTTGCA...........................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCTGCTGGTGATGG21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TTGCTGCTGCTGCTGCTGTTG.............................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCTGCTGCTGTT..............................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TGCTGC------------------TGC-----------------------------------------------------------------------------TGCT--------GGTGTT------............................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
droSim2
TT-GGGTC--G--------C------CGCCGCATGGCT----------------------------GTGGCGCGAGT-------TGCTGC------------------TGC-----------------------------------------------------------------------------TGCT--------GGTGTT------GGCGG-GCT---------------GGTGGTGA------------------------------------------------------------------------------------------------------TGGCGG-------------------------TGGTGTTGCTGCTGCTGCTGCTGTTGGAGCAACTGCTGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGGCAGCCACGGCG-----------GC--GTGGTACATGTGTTGCTGCTGCTGCTGGTGGTGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................GTT------GGCGG-GCT---------------GGTGGTGA------------------------------------------------------------------------------------------------------T.....................................................................................................................................................................................................................................................................................................................2011.00100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGCTGCTGCTGCT........17200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTGTTGCTGCTGCTGCT....................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
TC-CGGCACTG---CAG---------TTGCCTGTTGCT----------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTATAGTTATGGTTAAGTTGTGCCTGCTGT---------TGCTGGTAGTTGAGTTGTTGCGGCGGTTGCTGTTGTTGTT------------------------GC------------------------------------------TGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTGCGCCTGCGTTTGCTGCTGCTGATGCTGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CG-TGTGGTTG---T---------------------------------------------------------------------------------------TGCTGTTGTTGTTGT--------------------------------------------------------------------------TGGTGCTGT---------------------------------------------------------------------------------------------------------------TGTGGTGGCTGTTGTAATTGTT------------------G-------------------------TTGTTTTTCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTCTCGTA---TTAAA------------CGGTTGCTTTT-----GTTGTGGCAGTGATAGTTGCTGTTGTTGTTGTTGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................CTGTTGTTGTTGT--------------------------------------------------------------------------TGGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.33110000000000
droEre2
AG-CTGCGCTG---AGCTG----------CGCTGAGCT----------------------------GAGTGGAGTGT-------TGCTGT------------------TGCTGTTGCACAAACAGCCTTGAAACGAGACGATT----------------------------------------------------GC---------------------------------------------------------------------------------------------------------TGCCGCTGCCGCTGTTGCT------GCCGCT------------------GTCGTTAC------------------------------------------------------------------------------------------TTTGGCCACAAAATTTATATTATT------AGCCAATTGTTGCTGCGGTGCAGGCCATGATGAAACGGCA-----------------------------------------------------------------------------------------------------AA------------CAGTTGCTG---C--TCGGTGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 06:41 PM