ID:

dvi_4594

 Coordinate:

scaffold_12855:9961349-9961499 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.6 -16.3 -16.3

Flybase annnotation

CDS [Dvir\GJ24722-cds]; exon [dvir_GLEANR_9998:4]; intron [Dvir\GJ24722-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron-
mature
star
  1. scaffold_12100:50854-50879 +
  2. dvi_4594  scaffold_12855:9961450-9961475 -
  3. scaffold_12947:10907-10932 +
  4. scaffold_13052:686197-686222 -
  5. scaffold_13324:1111373-1111398 -
  6. scaffold_13324:2465720-2465745 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCCCAAAAGTATTTGCGAGTGCTGGATCCAGACTATTATGAGTTTGAGAGTAAGTTATCTTATTGTTATACCCTTGTAGAGGGTATTATAATTTTGTCGTGAAATATGTAACCCATAGAAAGAGACATCTCCGACCCCATAAAGAATATATATATTCTTGAACAGTATCAACAGTCGAGTCGATATAGCCATGTCTGTCTGTCTGTTTCTATGCAAACTAGTCTCTCAGTTTTTAAGCTATCTTTATGAA
**************************************************************************.......((((..........((((......((((.....))))......))))......))))....(((((((....))))))).....(((((.((......)).)))))..........****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060689
160x9_testes_total
 SRR060676
9xArg_ovaries_total
 M047
female body
 SRR060678
9x140_testes_total
 SRR060688
160_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060674
9x140_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060683
160_testes_total
 V116
male body		 SRR1106724
embryo_12-14h
 SRR060681
Argx9_testes_total
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060670
9_testes_total
 SRR1106723
embryo_12-14h
 SRR060677
Argx9_ovaries_total
...............................................................................................................................................................................TCGAGTCGATATAGCCATGTCT...................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CGATATAGCCATGTCTGTCTGTCTTAT........................................... 27 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GAGTCGATATAGCCATGTCTGTCT.................................................. 24 0 14 0.21 3 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0
................................................................................................................................................................................CGAGTCGATATAGCCATGTCTGTCT.................................................. 25 0 14 0.21 3 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AAAAATGTAACACATAGAAAGAGGCATC......................................................................................................................... 28 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGTCTGTTCCTATGCAAACTAGTCTCT........................ 27 1 10 0.20 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ATATTCTTGAAAAGTATCAACAGTA.......................................................................... 25 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TTGTAGAGGGTATTATAATTTTGTCG....................................................................................................................................................... 26 0 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATATAGCCATGTCTGTCTGTCT.............................................. 22 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................TCGATATAGCCATGTCTGTCTGTC............................................... 24 0 15 0.13 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CGATATAGCCATGTCTGTCTG................................................. 21 0 15 0.13 2 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................TCGATATAGCCATGTCTGTCTG................................................. 22 0 15 0.13 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCGATATAGCCATGTCTGTCTGTTT.............................................. 25 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GAACAAGATCCACAGTCGAGT...................................................................... 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTCTGTCTGTCTGTTTCTATGC.................................... 22 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TCAACAGTCGAGTCGATATAGCCAT.......................................................... 25 0 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AGTCGATATAGCCATGTCTGTCTGT................................................ 25 0 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................ATAGAAAGAGACATCTCCGACCCCA............................................................................................................... 25 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TCAACAGTCGAGTCGATATAGCCA........................................................... 24 0 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TCTCCGACCCCATAAAGAATATA.................................................................................................... 23 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................GTCGATATAGCCATGTCTGTCTGT................................................ 24 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................GTCGATATAGCCATGTCTGTCTG................................................. 23 0 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CGATATAGCCATGTCTGTCTGT................................................ 22 0 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCGATATAGCCATGTCTGTCT.................................................. 21 0 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTCGATATAGCCATGTCTGTCT.................................................. 22 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TATTATAATTTTGTCGTGAAATATG.............................................................................................................................................. 25 0 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AGTCGATATAGCCATGTCTGTC................................................... 22 0 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................GATATAGCCATGTCTGTCTGT................................................ 21 0 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTCGATATAGCCATGTCTGTC................................................... 21 0 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................CGAGTCGATATAGCCATGTCT...................................................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCGATATAGCCACGTCTGTCT.................................................. 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TGTCTGTCTGTCTGTTTCCGTGC.................................... 23 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AGTCGATATAGCCATGTCTG..................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................CGAGTCGATATAGCCATGTCTGT.................................................... 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCAAACTAGTCTCTCAGT.................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CAAGAGACATCTCCGACCCCAT.............................................................................................................. 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CGAGTCGATATCGCCATGTCT...................................................... 21 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GAGTCGATATAGCCATGTCTGT.................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TCGGGTTTTCATAAACGCTCACGACCTAGGTCTGATAATACTCAAACTCTCATTCAATAGAATAACAATATGGGAACATCTCCCATAATATTAAAACAGCACTTTATACATTGGGTATCTTTCTCTGTAGAGGCTGGGGTATTTCTTATATATATAAGAACTTGTCATAGTTGTCAGCTCAGCTATATCGGTACAGACAGACAGACAAAGATACGTTTGATCAGAGAGTCAAAAATTCGATAGAAATACTT
******************************************************.......((((..........((((......((((.....))))......))))......))))....(((((((....))))))).....(((((.((......)).)))))..........************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060674
9x140_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 M047
female body
 SRR060675
140x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060670
9_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060680
 9xArg_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060689
160x9_testes_total
...........................................................................................................................................................................................TCGGTACAGACAGACAGACAAAGAT....................................... 25 0 4 0.75 3 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TATATATATAAGAACTTGTCACA.................................................................................. 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GTACAGACAGACAGACAAAGATA...................................... 23 0 5 0.40 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGTACAGACAGACAGACAAAGATAC..................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATCGGTACAGACAGACAGACAAAGAT....................................... 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGTACAGACAGACAGACAAAGATA...................................... 24 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TATATCGGTACAGACAGACAGACAA........................................... 25 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGCTATATCGGTACAGACAGA.................................................. 21 0 16 0.19 3 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................CTCTGTAGAGGCTGGGGTATTTCTT........................................................................................................ 25 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ATATCGGTACAGACAAACAGACAAAGAT....................................... 28 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTCAGCTATATCGGTACAGACAGACA................................................ 26 0 13 0.15 2 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CGGTACAGACAGACAGACAAA.......................................... 21 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACAGACAAAGATACGTTTGATCAGAGA........................ 27 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GCTCAGCTATATCGGTACAGAC..................................................... 22 0 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATCGGTACAGACAGACAGACA............................................ 22 0 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATCGGTACAGACAGACAGAC............................................. 21 0 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGACAAAGATGCGTTTGATCAGAGAGT...................... 27 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ACAGACAGACAGACAAAGAT....................................... 20 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTCAGCTATATCGGTACAGACAGAC................................................. 25 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GTATCTTTCTCTGTAGAGGCTGGGGT............................................................................................................... 26 0 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................TCAGCTATATCGGTACAGACAGAC................................................. 24 0 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................AATATTAAAACAGCACTTTATACATT........................................................................................................................................... 26 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................ATCTTTCTGTGTAGAGGCTGGGGT............................................................................................................... 24 1 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTTGTCAGCTCAGCTATATCGGTAC......................................................... 25 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ATAATATTAAAACAGCACTTTATACATT........................................................................................................................................... 28 0 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TAATATTAAAACAGCACTTTATACATT........................................................................................................................................... 27 0 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GCTATATCGGTACAGACAGAC................................................. 21 0 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GTATCTTTCTCTGTAGAGGCT.................................................................................................................... 21 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................AGTTGTCAGCTCAGCTATATCG............................................................. 22 0 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AACAGACAGACAGACAAAGATAC..................................... 23 1 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TATTAAAACAGCACTTTATA............................................................................................................................................... 20 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTAAAACAGCACTTTATACATT........................................................................................................................................... 22 0 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CTTTCTGTGTAGAGGCTGGGGT............................................................................................................... 22 1 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CTCTGTAGAGGCTGGGGTATTT........................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CCAATGATGCGTTTGATCAGAGAGT...................... 25 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CTATCTTTCTGTGTAGAGGCTGGGGT............................................................................................................... 26 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................CTCTGTAGAGGCTGGGGTAT............................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................TTTCTGTGTAGAGGCTGGGGT............................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................AATAATATTAAAACAGCACTTTATACAT............................................................................................................................................ 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTTGTCAGCTCAGCTATATCG............................................................. 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................TCTATCGGTACAGACAGACAG............................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................GGAACATCTCCCCTAATATTAAAA........................................................................................................................................................... 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTCAGCTATATCGGTACAGAC..................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:9961299-9961549 - dvi_4594 AGCCCAAAA-G--------------------------TATT------------------TGCGAGTGC-----TGGATCCAGA--------------------------CTATTATGAG--------------------TT----------------TGAGAGTAAG-T-----------------------------------TATCTT----------------------ATTGTTATACCCTT-----GTA------GA-------GGGTATTATAATTTTGT--CGT-----GAAATATGTAACCCATAGAAAGAGACATCTCCGACCCCATAAAGAATATATATATTCTTGAACAGTATCAACAGTCGAGTCGATATAGC--CATGTCTGTCTGTCTG--------------------TTTCTATGCAAACTAGTCTCTCAGTTTT-----TA-AGCTATCTTTATG------------------------AA
droMoj3 scaffold_6500:16011613-16011853 - TGAGA-----------------------------------------------------------GTTC-----TGGAATTAC-------------------------------TATTAG--------------------TA-----------TTATT--------A---------------------------------------------------TAA------TTTTTTTTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTG---TGA-----AAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAG--TATATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGC--CCTGTCCGTCTGTCCG--------------------TCCGTCCGTCCGTCCGTCCCTCCGTCCG---------TCCGTCCGTATG------------------------A-
droGri2 scaffold_15110:7191954-7192210 + AGCATAAAA-A--------------------------TAT--------------------AC--------------ATT----TTTAGAATTGCTTTAAAGTGTGCAGAATATTTTCAT--------------------TTTGT------TGTTGTT--------TTCC-----------------------------------TTATTG----------------------TTTTTTATACCCTT-----GTC------GA-------AGGTATTCCAATTTTGT--CGT-----GCAGTTTGTAATTCATTGAAGGAGACATCTCCGA-----TAAAA--GTTATATATTCTTTCTCAGCATCATTCC-CGCATCTCTATATATATATATATATATATACATTTATCTGGTCGTCTGTTTGTTTG----------------------TT-----AA-GTGTATCTTGATG------------------------AA
droWil2 scf2_1100000012366:513-754 + AGTCGAAAA-A--------------------------AATT------------------TGCTAAAAT-----TGCATTCATT-----------------------------------------------------------------------------------------------------------------------------TTATTTTTATAG------ATTTGTTTTTTTATGCCCTT-----GTA------GA-------GGGTATTATAAAATTGG--TCA-----GATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAG--TATATATATTCTTGATCAGCAAGAGAAGCTGAGTCGATATAGC--CATGTCTGTCCGTCTG--------------------TGCTTATGCGTTTTACTCAGCC-GTCTTAAATAAG-AGCTATCGGTCTG------------------------AA
dp5 XR_group6:308231-308453 - AGCATAGTG-G--------------------------AACT------------------GGCGACTAC-----TGCGTCAAGG--------------------------ATTAT--GC------------------------------------------------------------AGTCGA--------------G-----CACTTT----------------------GTTTTTATACCCGATACTCAAA----ATGAG-TATAGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAAGCGTTTCCGACCCCATAAAG--TATATATATTCTTGATCAGCATCAGTAGCCGAGTCGATTGAGC--CATGTCTGTCTGTCCG--------------------TCCCTATG-------------------------------------------------------------------
droPer2 scaffold_62:37139-37372 - GCTGAGAAG-G--------------------------ATTTTTGAGTGATCTAGGAATTTGAGG--ATTATATTGGAGTTTT-----------------------TATA-----TATAT--------------------TTT------------------------------------------------------------------------------------------ATTATTATAT----------TA------CAT-TATATTTATATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAG--TATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGC--CCTGCCCGTCTGTCTC--------------------TCTCTAA-CACACAGGTTTC-------------------------------------------------------
droAna3 scaffold_13089:320005-320248 + AAACGCA-------------------------CTAAAAA-------------------------TTTC-----TGGCTCCAAA--------------------------ATTATATT------------------------------------TCTTATAAATTTTT-C-----------------------------------TATTTC----------------------TTTTTTATACCCAT-----GCA------GA-------GGGTATTATGATTTTGG--TCA-----CAAGTTTGCAACGCAGTAAAGGAGACATCTCCGACCATATAAAG--TATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAG--CATGTCCGTCTTTCCG--------------------TTTCTACGCAAACTAGTCTCTCAGTTTT-----AA-AGCTATCAAGTTG------------------------AA
droBip1 scf7180000393852:2919-3179 - AGCTCCGAAAA--------------------------AATT------------------TATCGGA-----------------------ATTAGTGAT--ATACTCGGATAGTATCAAATTTGGAG---------A--------GATTA-------T--------GAAC-----------------------------------ATACTT----------------------ATATTTATACCATT-----GCA------GA-------GGGTATTATAATTTTGG--TCA-----AAAGTATGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAG--TATATATATTCCTGATCAGGATCACCTCCTTATTTGATATGAG--CATGTCCGTCTGTCTG--------------------TTTCTACGCGAACTAGTCTCTCAGTTTT-----AA-AGCTATCGTCTAG------------------------AA
droKik1 scf7180000298536:897-1150 + GTGTAAAGA-A--------------------------AGTA------------------GGCGTGGAC-----AGAGTCCA---------------------------------TGG---------------------------GACTATGGGTA--TGT------CACTATA-------------------------------TTTAAT----------------------ATATTTATACCCTT-----GCA---------------GGGTATTATAATTTCAG--TAA-----GAAGTTTGCAACGCAGTGAAAGAGACCTTTCCGACCCTATAAAG--TATATATATTCTTGATGATCGTCAACAGCCGAGTCGATCTAGC--CATGTCCGTCTGTCCGT------------CTGTCCGTTTCTACGCAAACTAGTCCCTCAGTTTT-----AA-AGCTATCTTAATG------------------------AA
droFic1 scf7180000449830:8167-8443 - GCTTAAGTG-TGTTTTCAATGTCAGCTTCACACTAGATA----------------------------T-----TGGGTTCGAT------TTC-------------AATG-----TGA---------------------------G-----------A--------G--C-----------------------------------TGATGT----------------------ATTTTTATACCCTT-----GCA------GAG-CA-AAGGGTATTATAATTTTGT--CCA-----GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAG--TATATATATTCTTGATCAGCATCACGAGCAGAATCGGAATACG--TCTGTACGTCTGTCCGT----CTGTCCGTCTGTCCGTTTCTGCCTAAACTAGTCTCTCAGTTTT-----AA-AGCTATCTCGCTG------------------------AA
droEle1 scf7180000490996:99130-99365 + AAAAA--------------------------------TATT------------------TGA----AT-----TGAATACAAA--------------------------ATACTTAGAC--------------------TTTTT------AGG------------------------------------------------------TAT----------------------ATTTGTATACCCAT-----GCA------GA-------GGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACATCTCCAACCCTATAAAG--TATATATATTCTTGATCAGCATCACTAGGAGAGTCGATCTAGC--CATGTCCGTCTGTCCGT------------C----CGTTTCTATGCAAACTAGTCTCTCAGTTTT-----AA-AGCTATCTGCATG------------------------AA
droRho1 scf7180000773794:19437-19682 - CATAA-----G--------------------------AATC------------------GGCGG--AC-----TATATTAAAA--------------------------TTATTTTCCA------------TTTAG-------------------------AATCTG-T---------CGTCG-----------------------ATTA----------------------ATTTTTATACCCTT-----GCA------GA-------GGGTATTACAATTT-GG--TCA-----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATACC--CATGTCCGTCTGTCTG--------------------TTTCTACGCAAACTAGTCTCTCAGTTTT-----AA-AGCTATCGAATTG------------------------AA
droBia1 scf7180000299181:7090-7335 + CCAAAAAT------------------------------ACT----------------------ATTGC-----TGA---CAT----------------------------TATTA-G--------------------------------------------------------------GACGA------------------------TTATTTTTA--AAGGTAAGTTACTGTTTTTATACCCTT-----GAA------GA-------GGGTACAATGATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATTAAG--TATATATATTCTTGATCAGCGTCACAAGACGAATCGATTTAGC--CATGTCCGTCTGTCCGT------------C----CGTTTTTACGCAAACTAGTCTCTCAGTTTT-----AA-AGCTATCGAGCTG------------------------AA
droTak1 scf7180000413331:29857-30110 + CAAAATT-------------------------------AT------------------------------------ATT----CTTGGA-GTGCTCCA------------------C---------AGCAATTTAAAATTTTG-------------------------TTAGTGCTAG-----A---------GCCCTA-----GGTCAC----------------------GTTTTTATACCCTT-----GCA------GA-------GGGTATTATAATTTCAT--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAA--TATATATATTCTTGATCAGCATCACAAGTCGAGTCGATCTAGC--CATGTCCGTCTGTCTG--------------------TTTCTACGCAAACTAGTCTCTCAGTTTT-----TG-AGCTATCGGGATA------------------------AA
droEug1 scf7180000409766:376623-376856 - TTGCGAGTG-A--------------------------AAGT---------------------------------------------------------------------TAATA-T---------AACGATTTAGTAATTTG-------------------------T-------------------------------------------------AA------AGGTCTCTTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGT--TGA-----ATAGTATGTAACAGATAGAAGGAAGCGTTTCCGACCCTATAAAG--TATATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGC--CATGTCCGTCTGTCCG--------------------TCCGTATGAACGCTGAGATCTCAGTTAC-----TA-TACCA----------------------------------
dm3 chr2L:21860026-21860260 + CTCGAAAT-----------------------------CATT------------------TGTGGGA------------TCAA-----------CTATT--AT----GGATTCT-----------------------------------------------------TCTGAGATTTAA---------------AACCAGC----AAAACT----------------------TATTTAATACTCTT-----GCA------GA-------GGGTGTATTGTTTTAAA--TCA------GAGTTTGCAATGCAGTAAGTCAAATATTATGC-----ATA-AA--TGTATACATT--T------TATCAACAGCCACGTCGATAAAGC--TATGTTCGTTAGTTTT--------------------TTTCTACGCAATCGAATCTCTAAGTTTT-----AAAAGCTTTTAGCATG------------------------AA
droSim2 2r:1874459-1874717 - TTTCGACT----------------------------------------------------------GC-----TGTGCCA-G---------------------------ATCTTTATAA--------------------CTCTC------AGCTATA--------GCAC-----------------------------------ATTTTA----------------------ATTTTTATACCCGTTACTCGTT------GAC-TAAAAGGGCTTACTAGATTAAT--TGA-----AGAGTATGTAACAGGCGGAAGGAAGCTTTTTCGACCATATAATG--TATATATATTCGTAATCAGGATAAATGGCCTAGTCGTCCTGCC--CATGTCCGTCTGTCCG--------------------TGCCCGTATGAACGTCG----AGATCTC-----AG----------GAACTCTAAAAGCTGATTCTAGAGACATAG
droSec2 scaffold_8:1306580-1306792 - GCTTATAAA-T---------------------------ATT------------------TGATA---T-----TGTTTAT------------------------------------GAA--------------------TT----------------TGT------------------GATCGTACAAGTTTTACCGAGAGT--TTTATT----------------------TTTTTTATACCCGCTACTCGTA------GAG-TAAAAGGGTAAACTAGATTCGT--TGT-----AAAATATGTAACAGGCAAAAGGAAGCGTTTCCGATCGTATAAAG--TATATATATTCTTGATCTGGATCAATAGCCGAGTCGATCTGAC--CATGTCCGTCTG---------------------------------------------------------------------------------------------------
droYak3 2L:21068760-21068990 - ATTGGAG--------------------------------------------------------AATAC-----TGAGACCCT-----------------------TACG-----TGG---------------------------G-----------A--------A---------------------------------------------------TAA------GTTTTTGTTATTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAG--TATATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGC--CATGTCCGTCTGTCCG--------------------TCCGTCTGTCC----GTCTGTCCGTCT---------GTCTGTCCGTATG------------------------AA
droEre2 scaffold_4770:1063570-1063811 + TATATCCA-------------------------------------------------------ATTAC-----TACAATCAAA--------------------------TGATCTTTAG--------------------TT----------------AGGA----A--------------ACAATTTACTTTTATCCAGCTTCCATTTTT----------------------TTTTTTTTGCCCTT-----GCA------GG-------GAA-----------------------------TTGCAAAACAGTAAACGAGACATTTGCGACCATATAAGG--TATACATATACTAGATTAATAACAAATGTCCAGTCGATATAGC--CATGTGCGGGTGCCCGT------------CCGTTTCTTTCTACGCAAACAAGTCTCTCAGCT-T-----AA-ACCTATCTGCATG------------------------AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGCCCAAAA-G--------------------------TATT------------------TGCGAGTGC-----TGGATCCAGA--------------------------CTATTATGAG--------------------TT----------------TGAGAGTAAG-T-----------------------------------TATCTT----------------------ATTGTTATACCCTT-----GTA------GA-------GGGTATTATAATTTTGT--CGT-----GAAATATGTAACCCATAGAAAGAGACATCTCCGACCCCATAAAGAATATATATATTCTTGAACAGTATCAACAGTCGAGTCGATATAGC--CATGTCTGTCTGTCTG--------------------TTTCTATGCAAACTAGTCTCTCAGTTTT-----TA-AGCTATCTTTATG------------------------AASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................TCGAGTCGATATAGC--CATGTCT........................................................................................................2211.001000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATATAGC--CATGTCTGTCT....................................................................................................24140.213000000000000000000001000001001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATATAGC--CATGTCTGTCT....................................................................................................25140.213000000000000000000000000000010200000000000000000000000000000000
....................................................................................................................................................................................................................................................TT-----GTA------GA-------GGGTATTATAATTTTGT--CG................................................................................................................................................................................................................2660.171000000000000000000000000000000000001000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATATAGC--CATGTCTGTCTGTCT................................................................................................2270.141000000000000000000000000000000000000000000000000000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TCGATATAGC--CATGTCTGTCTGTC.................................................................................................24150.132000000000000000000000000000000000000002000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CGATATAGC--CATGTCTGTCTG...................................................................................................21150.132000000000000000000000000000000010001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TCGATATAGC--CATGTCTGTCTG...................................................................................................22150.132000000000000000000000000000000000200000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTGTCTG--------------------TTTCTATGC..................................................................22120.081001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TCAACAGTCGAGTCGATATAGC--CAT............................................................................................................25130.081000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AGTCGATATAGC--CATGTCTGTCTGT..................................................................................................25130.081000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATAGAAAGAGACATCTCCGACCCCA...................................................................................................................................................................25130.081001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TCAACAGTCGAGTCGATATAGC--CA.............................................................................................................24140.071000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TCTCCGACCCCATAAAGAATATA........................................................................................................................................................23150.071000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTCGATATAGC--CATGTCTGTCTGT..................................................................................................24150.071000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTCGATATAGC--CATGTCTGTCTG...................................................................................................23150.071000000000000000000000000000000100000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CGATATAGC--CATGTCTGTCTGT..................................................................................................22150.071000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TCGATATAGC--CATGTCTGTCT....................................................................................................21160.061000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTCGATATAGC--CATGTCTGTCT....................................................................................................22160.061000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TATTATAATTTTGT--CGT-----GAAATATG..................................................................................................................................................................................................25160.061000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AGTCGATATAGC--CATGTCTGTC.....................................................................................................22170.061000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GATATAGC--CATGTCTGTCTGT..................................................................................................21180.061000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTCGATATAGC--CATGTCTGTC.....................................................................................................21190.051000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATATAGC--CATGTCT........................................................................................................21200.051000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AGTCGATATAGC--CATGTCTG.......................................................................................................20200.051000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATATAGC--CATGTCTGT......................................................................................................23200.051000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAACTAGTCTCTCAGT..................................................19200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATATAGC--CATGTCTGT......................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
TGAGA-----------------------------------------------------------GTTC-----TGGAATTAC-------------------------------TATTAG--------------------TA-----------TTATT--------A---------------------------------------------------TAA------TTTTTTTTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTG---TGA-----AAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAG--TATATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGC--CCTGTCCGTCTGTCCG--------------------TCCGTCCGTCCGTCCGTCCCTCCGTCCG---------TCCGTCCGTATG------------------------A-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................AG--TATATATATTCTTGATCAGG........................................................................................................................................22200.102200000
........................................................................................................................................................................................................................................................................................................................AGAAGGAATCATCGCAGACCC.....................................................................................................................................................................21200.051100000
...............................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAATCATCGCAG.........................................................................................................................................................................26200.051100000
.................................................................................................................................................................................................................................................................................................GA-----AAAGTATGTAACAGGCA.........................................................................................................................................................................................19200.051100000
.............................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAATCATC.............................................................................................................................................................................24200.051100000
droGri2
AGCATAAAA-A--------------------------TAT--------------------AC--------------ATT----TTTAGAATTGCTTTAAAGTGTGCAGAATATTTTCAT--------------------TTTGT------TGTTGTT--------TTCC-----------------------------------TTATTG----------------------TTTTTTATACCCTT-----GTC------GA-------AGGTATTCCAATTTTGT--CGT-----GCAGTTTGTAATTCATTGAAGGAGACATCTCCGA-----TAAAA--GTTATATATTCTTTCTCAGCATCATTCC-CGCATCTCTATATATATATATATATATATACATTTATCTGGTCGTCTGTTTGTTTG----------------------TT-----AA-GTGTATCTTGATG------------------------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGTCGAAAA-A--------------------------AATT------------------TGCTAAAAT-----TGCATTCATT-----------------------------------------------------------------------------------------------------------------------------TTATTTTTATAG------ATTTGTTTTTTTATGCCCTT-----GTA------GA-------GGGTATTATAAAATTGG--TCA-----GATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAG--TATATATATTCTTGATCAGCAAGAGAAGCTGAGTCGATATAGC--CATGTCTGTCCGTCTG--------------------TGCTTATGCGTTTTACTCAGCC-GTCTTAAATAAG-AGCTATCGGTCTG------------------------AASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................GAAGGAGACGTTTCCGACCCCATAAA...............................................................................................................................................................26200.10200020
...................................................................................................................................................................................................................................................................................TATAAAATTGG--TCA-----GATG......................................................................................................................................................................................................18200.10200020
...............................................................................................................................................................................................................................................................................................................GTAACGCACAGAAGGAGACGTT.............................................................................................................................................................................22200.10202000
......................................................................................................................................................................................................................................................................................................................................................................CAGCAAGAGAAGCTGAGTCGATAT....................................................................................................................24130.08101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGTTTTACTCAGCC-GTCTTAAA............................................26140.07101000
............................................................................................................................................................................................................................................................................................GG--TCA-----GATGTTTGTAACGCA...........................................................................................................................................................................................20200.05100010
............................................................................................................................................................................................................................................................TA------GA-------GGGTATTATAAAATTGG--TCA-----G.........................................................................................................................................................................................................25200.05101000
...............................................................................................................................................................................................................................................................................................................GTAACGCACAGAAGGAGACGTTTCC..........................................................................................................................................................................25200.05100100
........................................................................................................................................................................................................................................................................................AATTGG--TCA-----GATGTTTGTAACG.............................................................................................................................................................................................22200.05100100
............................................................................................................................................................................................................................................................................................GG--TCA-----GATGTTTGTAACG.............................................................................................................................................................................................18200.05100010
.........................................................................................................................................................................................................................................................................................................................GAAGGAGACGTTTCCGACCCC....................................................................................................................................................................21200.05100001
.............................................................................................................................................................................................................................................................................GGGTATTATAAAATTGG--TCA-----GATGTTTG..................................................................................................................................................................................................28200.05101000
...........................................................................................................................................................................................................................................................................................................................AGGAGACGTTTCCGACCCCAT..................................................................................................................................................................21200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTCAGCC-GTCTTAAA............................................19200.05100010
..................................................................................................................................................................................................................................................................................TTATAAAATTGG--TCA-----GATG......................................................................................................................................................................................................19200.05100010
...........................................................................................................................................................................................................................................................................................TGG--TCA-----GATGTTTGTAACGCACAG........................................................................................................................................................................................24200.05101000
dp5
AGCATAGTG-G--------------------------AACT------------------GGCGACTAC-----TGCGTCAAGG--------------------------ATTAT--GC------------------------------------------------------------AGTCGA--------------G-----CACTTT----------------------GTTTTTATACCCGATACTCAAA----ATGAG-TATAGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAAGCGTTTCCGACCCCATAAAG--TATATATATTCTTGATCAGCATCAGTAGCCGAGTCGATTGAGC--CATGTCTGTCTGTCCG--------------------TCCCTATG-------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGAGTC.........................................................................................................................24610.836505490200000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGAGT..........................................................................................................................2366.333803620000000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGAGTCG........................................................................................................................2565.833503400100000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGAG...........................................................................................................................2265.503303100101000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGA............................................................................................................................2162.671601210102000
.........................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGT...................................................................................................................................................................................................22202.3046000011035000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGAGTCGA.......................................................................................................................2661.83110810000020
.........................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTGTA................................................................................................................................................................................................25200.701400000014000
.........................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGT.....................................................................................................................................................................................................20200.551100000011000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCG.............................................................................................................................2070.4330300000000
......................................................................................................................................................................................................................................................................................................................................................................................GTCGATTGAGC--CATGTCTGT......................................................................................................20200.4080800000000
................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAGTAGCCGAGT..........................................................................................................................2450.4020200000000
..................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAGTAGCCGAGT..........................................................................................................................2280.3830300000000
................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAGTAGCC..............................................................................................................................2060.3320001010000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGAGTCGAT......................................................................................................................2760.3320100001000
................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAGTAGCCG.............................................................................................................................2160.3320100001000
.........................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGAT.......................................................................................................................................................................................................18200.3060600000000
...........................................................................................................................................................................................................................................................................................................................................................................TCAGTAGCCGAGTCGATTGAG..................................................................................................................2170.2920200000000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCC..............................................................................................................................1970.2920200000000
............................................................................................................................................................................................................................................................................................................................................................................CAGTAGCCGAGTCGATTGAGC--...............................................................................................................2170.2920100001000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGAGTCGATT.....................................................................................................................2840.2510100000000
......................................................................................................................................................................................................................................................................................................................................................................CAGCATCAGTAGCCGAGTCGA.......................................................................................................................2180.2520200000000
.....................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAGTAGCCGAGTCG........................................................................................................................2180.2520100010000
..................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAGTAGCCGA............................................................................................................................2080.2520200000000
...........................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAGTAGCCGA............................................................................................................................2740.2510100000000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGAGTCGT.......................................................................................................................2690.2220100100000
...........................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAGTAGC...............................................................................................................................2450.2010100000000
.......................................................................................................................................................................................................................................................................................................................................................................AGCATCAGTAGCCGAGTCGAT......................................................................................................................21100.2020200000000
.............................................................................................................................................................................................................................................................................................................................................................................................GAGC--CATGTCTGTCTGTCCG--------------------TC.........................................................................22200.2040400000000
................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAGTAGCCGAG...........................................................................................................................2350.2010100000000
.............................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAGTAGCC..............................................................................................................................2350.2010100000000
............................................................................................................................................................................................................................................................................................GTGGTGAAAATGGATGTGTG..................................................................................................................................................................................................20200.2040400000000
....................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAGTAGCCGAGTC.........................................................................................................................21100.2020100010000
..................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAGTAGCCGAGTCGA.......................................................................................................................2560.1710100000000
..................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAGTAGCCGAGTCG........................................................................................................................2460.1710100000000
...........................................................................................................................................................................................................................................................................................................................................................................TCAGTAGCCGAGTCGATTGA...................................................................................................................2070.1410100000000
..........................................................................................................................................................................................................................................................................................................................................................................ATCAGTAGCCGAGTCGATTGA...................................................................................................................2170.1410000100000
..................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAGTAGCCGAG...........................................................................................................................2180.1310100000000
...........................................................................................................................................................................................................................................................................................................................................................................TCAGTAGCCGAGTCGATTG....................................................................................................................1980.1310100000000
..................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAGTAGCCGAGTC.........................................................................................................................2380.1310100000000
..............................................................................................................................................................................................................................................................................................................................................................................GTAGCCGAGTCGATTGAGC--C..............................................................................................................2090.1110100000000
..............................................................................................................................................................................................................................................................................................................................................................................GTAGCCGAGTCGATTGAGC--...............................................................................................................1990.1110100000000
...................................................................................................................................................................................................................................................................................................AAATGGATGTGTGTAACGTC...........................................................................................................................................................................................20200.1022000000000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGAT...........................................................................................................................22200.1020200000000
...........................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGTA................................................................................................................................................................................................23200.1020000000200
.....................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAGTAGCCGAGTC.........................................................................................................................20100.1010100000000
............................................................................................................................................................................................................................................................................................................................................................................................TGAGC--CATGTCTGTCTGTCCG--------------------TCC........................................................................24200.1020020000000
.......................................................................................................................................................................................................................................................................................................................................................................AGCATCAGTAGCCGAGTCGA.......................................................................................................................20100.1010100000000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGAGTCGAA......................................................................................................................27130.0810100000000
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAGTAGCCGAGA..........................................................................................................................23130.0810100000000
.......................................................................................................................................................................................................................................................................................................................................................................AGCATCAGTAGCCGAGTT.........................................................................................................................18200.0510000100000
................................................................................................................................................................................................................................................................................................TGAAAATGGATGTGTGTAA...............................................................................................................................................................................................19200.0510000001000
...........................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGT.................................................................................................................................................................................................22200.0510000100000
...................................................................................................................................................................................................................................................CGATACTCAAA----ATGAG-TATAGGGGT.................................................................................................................................................................................................................................25200.0510100000000
.........................................................................................................................................................................................................................................................................ATAGGGGTATATTAGATTTGTGGT.................................................................................................................................................................................................................24200.0510010000000
..........................................................................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGTGT.................................................................................................................................................................................................23200.0510000001000
..........................................................................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGTGTA................................................................................................................................................................................................24200.0510000001000
....................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAATGG.........................................................................................................................................................................................................21200.0510000001000
........................................................................................................................................................................................................................................................CTCAAA----ATGAG-TATAGGG...................................................................................................................................................................................................................................18200.0510100000000
..........................................................................................................................................................................................................................................................CAAA----ATGAG-TATAGGGGTATA..............................................................................................................................................................................................................................21200.0510000010000
...............................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAAGCGT..............................................................................................................................................................................21200.0510000100000
.........................................................................................................................................................................................................................................................................................................................GAAGGAAGCGTTTCCGACCCCATAA................................................................................................................................................................25200.0510100000000
..........................................................................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGTGTAACG.............................................................................................................................................................................................27200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAGTAGCCGAGTT.........................................................................................................................23200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGC--CATGTCTGTCTGTCCG--------------------...........................................................................25200.0510100000000
.......................................................................................................................................................................................................................................................................................GATTTGTGGTGAAAATGGATGT.....................................................................................................................................................................................................22200.0510100000000
droPer2
GCTGAGAAG-G--------------------------ATTTTTGAGTGATCTAGGAATTTGAGG--ATTATATTGGAGTTTT-----------------------TATA-----TATAT--------------------TTT------------------------------------------------------------------------------------------ATTATTATAT----------TA------CAT-TATATTTATATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAG--TATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGC--CCTGCCCGTCTGTCTC--------------------TCTCTAA-CACACAGGTTTC-------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAGC--CCTGC..........................................................................................................2560.171100000
droAna3
AAACGCA-------------------------CTAAAAA-------------------------TTTC-----TGGCTCCAAA--------------------------ATTATATT------------------------------------TCTTATAAATTTTT-C-----------------------------------TATTTC----------------------TTTTTTATACCCAT-----GCA------GA-------GGGTATTATGATTTTGG--TCA-----CAAGTTTGCAACGCAGTAAAGGAGACATCTCCGACCATATAAAG--TATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAG--CATGTCCGTCTTTCCG--------------------TTTCTACGCAAACTAGTCTCTCAGTTTT-----AA-AGCTATCAAGTTG------------------------AASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................A------GA-------GGGTATTATGATTTTGG--T.................................................................................................................................................................................................................21200.306000024
................................................................................................................................................................................................................................................................................................................................................................................TCCTGAGTCGATATGAG--CATGTCCG.......................................................................................................25200.306006000
....................................................................................................................................................................................................................................................................GA-------GGGTATTATGATTTTGG--TC................................................................................................................................................................................................................21200.204000130
.................................................................................................................................................................................................................................................................................................................................................................................CCTGAGTCGATATGAG--CATGTCCGTCT....................................................................................................27200.153030000
......................................................................................................................................................................................................................................................................................................................................................................................GTCGATATGAG--CATGTCCGTC.....................................................................................................21200.153030000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTTTCCG--------------------TTTCTACGCAAACTAG...........................................................2870.141100000
.....................................................................................................................................................................................................................................................................................................................................................................................AGTCGATATGAG--CATGTCCGTCTTT..................................................................................................25180.061001000
.......................................................................................................................................................................................................................................................................................................................................................................................TCGATATGAG--CATGTCCGTCTTTCC................................................................................................25190.051010000
.............................................................................................................................................................................................................................................................A------GA-------GGGTATTATGATTTTGG--..................................................................................................................................................................................................................20200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTCTCTCAGTTTT-----AA-AGCTATCAAG.............................28200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................TCGATATGAG--CATGTCCGTCTT...................................................................................................22200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTT-----AA-AGCTATCAAGTTG------------------------AA22200.051100000
..............................................................................................................................................................................................................................................................................................................TGCAACGCAGTAAAGGAGACA...............................................................................................................................................................................21200.051000010
.................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCACCTCC...............................................................................................................................18200.051100000
..........................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAC...................................................................................................................................21200.051000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTCAGTTTT-----AA-AGCTATCAAGT............................26200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................CGATATGAG--CATGTCCGTCTT...................................................................................................21200.051000001
.................................................................................................................................................................................................................................................................................................................AACGCAGTAAAGGAGACATCTCC..........................................................................................................................................................................23200.051010000
droBip1
AGCTCCGAAAA--------------------------AATT------------------TATCGGA-----------------------ATTAGTGAT--ATACTCGGATAGTATCAAATTTGGAG---------A--------GATTA-------T--------GAAC-----------------------------------ATACTT----------------------ATATTTATACCATT-----GCA------GA-------GGGTATTATAATTTTGG--TCA-----AAAGTATGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAG--TATATATATTCCTGATCAGGATCACCTCCTTATTTGATATGAG--CATGTCCGTCTGTCTG--------------------TTTCTACGCGAACTAGTCTCTCAGTTTT-----AA-AGCTATCGTCTAG------------------------AASizeHit CountTotal NormTotal
No Reads
droKik1
GTGTAAAGA-A--------------------------AGTA------------------GGCGTGGAC-----AGAGTCCA---------------------------------TGG---------------------------GACTATGGGTA--TGT------CACTATA-------------------------------TTTAAT----------------------ATATTTATACCCTT-----GCA---------------GGGTATTATAATTTCAG--TAA-----GAAGTTTGCAACGCAGTGAAAGAGACCTTTCCGACCCTATAAAG--TATATATATTCTTGATGATCGTCAACAGCCGAGTCGATCTAGC--CATGTCCGTCTGTCCGT------------CTGTCCGTTTCTACGCAAACTAGTCCCTCAGTTTT-----AA-AGCTATCTTAATG------------------------AASizeHit CountTotal NormTotal
No Reads
droFic1
GCTTAAGTG-TGTTTTCAATGTCAGCTTCACACTAGATA----------------------------T-----TGGGTTCGAT------TTC-------------AATG-----TGA---------------------------G-----------A--------G--C-----------------------------------TGATGT----------------------ATTTTTATACCCTT-----GCA------GAG-CA-AAGGGTATTATAATTTTGT--CCA-----GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAG--TATATATATTCTTGATCAGCATCACGAGCAGAATCGGAATACG--TCTGTACGTCTGTCCGT----CTGTCCGTCTGTCCGTTTCTGCCTAAACTAGTCTCTCAGTTTT-----AA-AGCTATCTCGCTG------------------------AASizeHit CountTotal NormTotal
No Reads
droEle1
AAAAA--------------------------------TATT------------------TGA----AT-----TGAATACAAA--------------------------ATACTTAGAC--------------------TTTTT------AGG------------------------------------------------------TAT----------------------ATTTGTATACCCAT-----GCA------GA-------GGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACATCTCCAACCCTATAAAG--TATATATATTCTTGATCAGCATCACTAGGAGAGTCGATCTAGC--CATGTCCGTCTGTCCGT------------C----CGTTTCTATGCAAACTAGTCTCTCAGTTTT-----AA-AGCTATCTGCATG------------------------AASizeHit CountTotal NormTotal
No Reads
droRho1
CATAA-----G--------------------------AATC------------------GGCGG--AC-----TATATTAAAA--------------------------TTATTTTCCA------------TTTAG-------------------------AATCTG-T---------CGTCG-----------------------ATTA----------------------ATTTTTATACCCTT-----GCA------GA-------GGGTATTACAATTT-GG--TCA-----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATACC--CATGTCCGTCTGTCTG--------------------TTTCTACGCAAACTAGTCTCTCAGTTTT-----AA-AGCTATCGAATTG------------------------AASizeHit CountTotal NormTotal
No Reads
droBia1
CCAAAAAT------------------------------ACT----------------------ATTGC-----TGA---CAT----------------------------TATTA-G--------------------------------------------------------------GACGA------------------------TTATTTTTA--AAGGTAAGTTACTGTTTTTATACCCTT-----GAA------GA-------GGGTACAATGATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATTAAG--TATATATATTCTTGATCAGCGTCACAAGACGAATCGATTTAGC--CATGTCCGTCTGTCCGT------------C----CGTTTTTACGCAAACTAGTCTCTCAGTTTT-----AA-AGCTATCGAGCTG------------------------AASizeHit CountTotal NormTotal
No Reads
droTak1
CAAAATT-------------------------------AT------------------------------------ATT----CTTGGA-GTGCTCCA------------------C---------AGCAATTTAAAATTTTG-------------------------TTAGTGCTAG-----A---------GCCCTA-----GGTCAC----------------------GTTTTTATACCCTT-----GCA------GA-------GGGTATTATAATTTCAT--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAA--TATATATATTCTTGATCAGCATCACAAGTCGAGTCGATCTAGC--CATGTCCGTCTGTCTG--------------------TTTCTACGCAAACTAGTCTCTCAGTTTT-----TG-AGCTATCGGGATA------------------------AASizeHit CountTotal NormTotal
No Reads
droEug1
TTGCGAGTG-A--------------------------AAGT---------------------------------------------------------------------TAATA-T---------AACGATTTAGTAATTTG-------------------------T-------------------------------------------------AA------AGGTCTCTTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGT--TGA-----ATAGTATGTAACAGATAGAAGGAAGCGTTTCCGACCCTATAAAG--TATATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGC--CATGTCCGTCTGTCCG--------------------TCCGTATGAACGCTGAGATCTCAGTTAC-----TA-TACCA----------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CTCGAAAT-----------------------------CATT------------------TGTGGGA------------TCAA-----------CTATT--AT----GGATTCT-----------------------------------------------------TCTGAGATTTAA---------------AACCAGC----AAAACT----------------------TATTTAATACTCTT-----GCA------GA-------GGGTGTATTGTTTTAAA--TCA------GAGTTTGCAATGCAGTAAGTCAAATATTATGC-----ATA-AA--TGTATACATT--T------TATCAACAGCCACGTCGATAAAGC--TATGTTCGTTAGTTTT--------------------TTTCTACGCAATCGAATCTCTAAGTTTT-----AAAAGCTTTTAGCATG------------------------AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................AA--TCA------GAGTTTGCAATGCAGT.........................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202000000
....................................................................................................................................................................................................................................................TT-----GCA------GA-------GGGTGTATTGTTTT.......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................TCAACAGCCACGTCGATAAAGC--...............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................ACTCTT-----GCA------GA-------GGGTGTATTG...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................TATT--AT----GGATTCT-----------------------------------------------------TCTGAGAT....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AA--TCA------GAGTTTGCAATGCAGTAAGT.....................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................A------GAGTTTGCAATGCAGTAAGT.....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................TCAA-----------CTATT--AT----GGATTCT-----------------------------------------------------TCTGAGATT...................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CATT--T------TATCAACAGCCACGTC.........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
droSim2
TTTCGACT----------------------------------------------------------GC-----TGTGCCA-G---------------------------ATCTTTATAA--------------------CTCTC------AGCTATA--------GCAC-----------------------------------ATTTTA----------------------ATTTTTATACCCGTTACTCGTT------GAC-TAAAAGGGCTTACTAGATTAAT--TGA-----AGAGTATGTAACAGGCGGAAGGAAGCTTTTTCGACCATATAATG--TATATATATTCGTAATCAGGATAAATGGCCTAGTCGTCCTGCC--CATGTCCGTCTGTCCG--------------------TGCCCGTATGAACGTCG----AGATCTC-----AG----------GAACTCTAAAAGCTGATTCTAGAGACATAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----AGATCTC-----AG----------GAACTCTAAAAGCTGA..............2714.00400400000000000000
........................................................................................................................................................................................................................................................................TAAAAGGGCTTACTAGATTAAT--TGA-----A.........................................................................................................................................................................................................2613.00300000020001000000
.........................................................................TGTGCCA-G---------------------------ATCTTTATAA--------------------CTC....................................................................................................................................................................................................................................................................................................................................................................2113.00300300000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTC-----AG----------GAACTCTAAAAGCTGAT.............2513.00300000000003000000
...................................................................................................................................................................................................................................................................................................................................................G--TATATATATTCGTAATCAGGATAAA...................................................................................................................................2613.00300100000100010000
...............................................................................................................................................................................................................................................TACCCGTTACTCGTT------GAC-TAAAAGGGC.................................................................................................................................................................................................................................2712.00200000010001000000
..............................................................................................................................................................................................................................................................................................................TGTAACAGGCGGAAGGAAGCTTTTT...........................................................................................................................................................................2512.00200000000000011000
.......T----------------------------------------------------------GC-----TGTGCCA-G---------------------------ATCTTTATAA--------------------CTC....................................................................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
..................................................................................................................................................................................................................................................................................................A-----AGAGTATGTAACAGGCGGAAGGAAG.................................................................................................................................................................................2612.00200000000000020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----AGATCTC-----AG----------GAACTCTAAAAGC.................2412.00200000011000000000
........................................................................................................................................................................................................................................................CTCGTT------GAC-TAAAAGGGCTTAC.............................................................................................................................................................................................................................2212.00200000000002000000
............................................................................................................................................................................................................................................................................................................TATGTAACAGGCGGAAGGAAGCTTT.............................................................................................................................................................................2512.00200000001001000000
................................................................................................................................................................................................................................................ACCCGTTACTCGTT------GAC-TAA.......................................................................................................................................................................................................................................2011.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TAGTCGTCCTGCC--CATGTCCGTCTGT..................................................................................................2611.00100000000001000000
.............................................................................................................................................................................................................................................................T------GAC-TAAAAGGGCTTACTAGATTAAT--..................................................................................................................................................................................................................2611.00100000000000010000
..................................................................................................................................................................................................................................................................................................................ACAGGCGGAAGGAAGCTTT.............................................................................................................................................................................1911.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................TGGCCTAGTCGTCCTGCC--CATGTCC........................................................................................................2511.00100010000000000000
.............................................................................................................................................................................................................TTTTA----------------------ATTTTTATACCCGTTACTCGT.....................................................................................................................................................................................................................................................2611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................TGGCCTAGTCGTCCTGCC--CATGTCCGTC.....................................................................................................2811.00100010000000000000
.......T----------------------------------------------------------GC-----TGTGCCA-G---------------------------ATCTTTATAA--------------------CA.....................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
......................................................................................................................................................................................................................................................TACTCGTT------GAC-TAAAAGGGCTTAC.............................................................................................................................................................................................................................2411.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTC-----AG----------GAACTCTAAAAGCTGA..............2411.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................TAGTCGTCCTGCC--CATGTCCGTCTG...................................................................................................2511.00100000000001000000
.........................................................................TGTGCCA-G---------------------------ATCTTTATAA--------------------CTCTC------AG..........................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
..........................................................................................................................................................................................................................................................................................................AGTATGTAACAGGCGGAAGGAAGCT...............................................................................................................................................................................2511.00100000000001000000
.........................................................................TGTGCCA-G---------------------------ATCTTTATAA--------------------CTCTC------AGCTA.......................................................................................................................................................................................................................................................................................................................................................2811.00100000000010000000
.................................................................................................................................................................................................................................................................................TTACTAGATTAAT--TGA-----..........................................................................................................................................................................................................1611.00100000000001000000
..................................................................................................................................................................................................................................................................................................A-----AGAGTATGTAACAGGCGGAAGGAA..................................................................................................................................................................................2511.00100000000001000000
......................................................................................................................................................................................................................................................TACTCGTT------GAC-TAAAAGGGCTTACTAGA.........................................................................................................................................................................................................................2811.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----AGATCTC-----AG----------GAACTCTAAAAG..................2411.00100100000000000000
................................................................................................................TTTATAA--------------------CTCTC------AGCTATA--------GCAC-----------------------------------ATTT..................................................................................................................................................................................................................................................................................................2711.00100000010000000000
....................................................................................................................................................................................................................................................................................................................AGGCGGAAGGAAGCTTT.............................................................................................................................................................................1711.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----AGATCTC-----AG----------GAACTCTAAAAGCTGAA.............2811.00100000000000010000
.........................................................................TGTGCCA-G---------------------------ATCTTTATAA--------------------CTCTC------AGC.........................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCCG--------------------TGCCCGTATGAACGTCG----AGATC.................................................2611.00100000000001000000
...........................................................................................................................................................................................................................................................................................................GTATGTAACAGGCGGAAGGA...................................................................................................................................................................................2030.67200000000101000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----AGATCTC-----AG----------GAACTCT.......................1820.50100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGTCG----AGATCT................................................16200.35700000000007000000
............................................................................................................................................................................................................................................................................................................TATGTAACAGGCGGAAGGAAG.................................................................................................................................................................................2130.33100000001000000000
............................................................................................................................................................................................................................................................................................................TATGTAACAGGCGGAAGGAA..................................................................................................................................................................................2030.33100000000001000000
.............................................................................................................................................................................................................................................................................................................ATGTAACAGGCGGAAGG....................................................................................................................................................................................1730.33100000000001000000
...........................................................................................................................................................................................................................................................................................................GTATGTAACAGGCGGAAGGAAGC................................................................................................................................................................................2330.33100000000001000000
............................................................................................................................................................................................................................................................................................................TATGTAACAGGCGGAAGGAAGC................................................................................................................................................................................2230.33100000000000100000
............................................................................................................................................................................................................................................................................................................TATGTAACAGGCGGAAGGA...................................................................................................................................................................................1930.33100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGTATGAACGTCG----AGATCTC-----AG----------GA............................2830.33100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGTATGAACGTCG----AGATCTC-----AG----------GA............................2640.25100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGTATGAACGTCG----AGATCT................................................2140.25100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----AGATCTC-----AG----------GAACTCTAAAAGCTGG..............27100.20200200000000000000
.................................................................................................................................................................................................................................................................................................GA-----AGAGTATGTAACAGG...........................................................................................................................................................................................1770.14100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGTCG----AGATCTC-----AG----------GA............................21200.10200200000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGTCG----AGATCTC-----AG----------GAACT.........................24200.10200000000200000000
................................................................................................................................................................................................................................................................................................TGA-----AGAGTATGTAACA.............................................................................................................................................................................................16140.07100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGTATGAACGTCG----AGATCTG-----G.........................................25140.07100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATGAACGTCG----AGATCTC-----AG----------..............................22200.05100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGTATGAACGTCG----AGATCTT-----T.........................................25200.05100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGTATGAACGTCG----AGATCTT-----TA----------..............................26200.05100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAACGTCG----AGATCTC-----AG----------..............................21200.05100000001000000000
.........................................................................................................................................................................................................................................TTTTTATACCCGTTACTCG......................................................................................................................................................................................................................................................19200.05100000000001000000
droSec2
GCTTATAAA-T---------------------------ATT------------------TGATA---T-----TGTTTAT------------------------------------GAA--------------------TT----------------TGT------------------GATCGTACAAGTTTTACCGAGAGT--TTTATT----------------------TTTTTTATACCCGCTACTCGTA------GAG-TAAAAGGGTAAACTAGATTCGT--TGT-----AAAATATGTAACAGGCAAAAGGAAGCGTTTCCGATCGTATAAAG--TATATATATTCTTGATCTGGATCAATAGCCGAGTCGATCTGAC--CATGTCCGTCTG---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................TTCGT--TGT-----AAAATATGTAACAGGCA.........................................................................................................................................................................................2522.0042020
.................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGAC--CATGTCCGTC.....................................................................................................2632.0064011
.................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGAC--CATGTCCGT......................................................................................................2551.2063030
.........................................................................................................................................................................................................................................................................................TTCGT--TGT-----AAAATATGTAACAGGC..........................................................................................................................................................................................2421.0022000
...................................................................................................................................................................................................................................................................................................................................................G--TATATATATTCTTGATCTGGATCA....................................................................................................................................2540.7532010
...................................................................................................................................................................................................................................................................................................................................................G--TATATATATTCTTGATCTGGATC.....................................................................................................................................2440.7532010
.................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGAC--CATGTCCGTCT....................................................................................................2730.6722000
...................................................................T-----TGTTTAT------------------------------------GAA--------------------TT----------------TGT------------------GATCGTACA.......................................................................................................................................................................................................................................................................................................................2520.5011000
...........................................................TGATA---T-----TGTTTAT------------------------------------GAA--------------------TT----------------TGT------------------................................................................................................................................................................................................................................................................................................................................2120.5011000
.............................................................................................................................................................TGT------------------GATCGTACAAGTTTTACCGAGAGT--......................................................................................................................................................................................................................................................................................................2720.5011000
.........................................................................................................................................................................................................................................................................................................AAATATGTAACAGGCAAAAGGAAGCGTT.............................................................................................................................................................................2820.5011000
..............................................................................................................................................................................................................................................................................GGTAAACTAGATTCGT--TGT-----..........................................................................................................................................................................................................1920.5010010
.........................................................................................................................................................................................................................................................................................TTCGT--TGT-----AAAATATGTAACAGGCAAA.......................................................................................................................................................................................2720.5011000
...............................................................................................................................................................................................................................................................................GTAAACTAGATTCGT--TGT-----AAAATA....................................................................................................................................................................................................2420.5010010
.............................................................................................................................................................................................................................................................................................................................GAAGCGTTTCCGATCGTATAAAG--TAT.........................................................................................................................................................2620.5011000
..........................................................................................................................................................................................................................................................................................TCGT--TGT-----AAAATATGTAACAGGC..........................................................................................................................................................................................2320.5011000
................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTGAC--CATGTCCGTC.....................................................................................................2720.5011000
...............................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTGAC--CATGTCCGTC.....................................................................................................2820.5011000
..............................................................................................................................................................................................................................................................................................................................AAGCGTTTCCGATCGTATAAAG--TA..........................................................................................................................................................2420.5011000
...............................................................................................................................................................T------------------GATCGTACAAGTTTTACCGAGAGT--......................................................................................................................................................................................................................................................................................................2520.5011000
............................................................................................................................................................................................................................................................................................................TATGTAACAGGCAAAAGGAAGCGTTTC...........................................................................................................................................................................2750.4020200
...........................................................................................................................................................................................................................................................................................................................AGGAAGCGTTTCCGATCGTATAAAG--T...........................................................................................................................................................2630.3311000
..................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGAC--CATGTCCGTC.....................................................................................................2530.3311000
...................................................................................................................................................................................................................................................................................................................................................G--TATATATATTCTTGATCTGGATCAA...................................................................................................................................2640.2511000
.............................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTGAC--CATG...........................................................................................................2440.2510010
...................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGAC--CATGTCCGTCTG---------------------------------------------------------------------------------------------------2640.2510010
...................................................................................................................................................................................................................................................................................................................................................G--TATATATATTCTTGATCTGGATCAAT..................................................................................................................................2740.2510010
.................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGAC--CATGTCC........................................................................................................2350.2010010
.................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGAC--CATGTCCG.......................................................................................................2450.2011000
..................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGAC--CATGTCCGT......................................................................................................2450.2011000
.......................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCTGGATCAA...................................................................................................................................2460.1711000
.......................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCTGGATCAAT..................................................................................................................................2560.1710010
.................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGAC--CATGTC.........................................................................................................2260.1711000
...................................................................................................................................................................................................................................................................................................................................................G--TATATATATTCTTGATCTGGATCAAA..................................................................................................................................27100.1011000
...........................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTGA..................................................................................................................21200.0510001
droYak3
ATTGGAG--------------------------------------------------------AATAC-----TGAGACCCT-----------------------TACG-----TGG---------------------------G-----------A--------A---------------------------------------------------TAA------GTTTTTGTTATTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAG--TATATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGC--CATGTCCGTCTGTCCG--------------------TCCGTCTGTCC----GTCTGTCCGTCT---------GTCTGTCCGTATG------------------------AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGT--..................................................................................................................................................................................................................21201.3527000000270000
...................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCGTTTCCGA........................................................................................................................................................................23200.30606000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TCGATTTGGC--CATGTCCGTCTGTCCG--------------------TC.........................................................................28200.20404000000000
.................................................................................................................................................................................................................................................................................ATACTAGATTCGT--TGA-----AAAGTA....................................................................................................................................................................................................22200.10200000020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCC----GTCTGTCCGTCT---------GTC....................................20200.10200020000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTCC----GTCTGTCCGTCT---------GTCTG..................................27200.05101000000000
.................................................................................................................................................................................................................................................................................................GA-----AAAGTATGTAACAGGCAGAAGGA...................................................................................................................................................................................25200.05100010000000
...............................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACCATATAAAG--TATA........................................................................................................................................................25200.05100100000000
............................................................................................................................................................................................................................................................................................................................................................................................TTGGC--CATGTCCGTCTGTCCG--------------------T..........................................................................22200.05100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCC----GTCTGTCCGTCT---------GTCTGTCC...............................27200.05100100000000
.......................................................................................................................................................................................................................................................ACTCGTA------GAG-TAAAAGGGT.................................................................................................................................................................................................................................19200.05100100000000
droEre2
TATATCCA-------------------------------------------------------ATTAC-----TACAATCAAA--------------------------TGATCTTTAG--------------------TT----------------AGGA----A--------------ACAATTTACTTTTATCCAGCTTCCATTTTT----------------------TTTTTTTTGCCCTT-----GCA------GG-------GAA-----------------------------TTGCAAAACAGTAAACGAGACATTTGCGACCATATAAGG--TATACATATACTAGATTAATAACAAATGTCCAGTCGATATAGC--CATGTGCGGGTGCCCGT------------CCGTTTCTTTCTACGCAAACAAGTCTCTCAGCT-T-----AA-ACCTATCTGCATG------------------------AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................GTAAACGAGACATTTGCGACC......................................................................................................................................................................2111.0010000100

Generated: 05/19/2015 at 01:14 PM