ID:

dvi_4554

 Coordinate:

scaffold_12855:9492032-9492182 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.1 -11.0 -11.0

Flybase annnotation

exon [dvir_GLEANR_10964:1]; CDS [Dvir\GJ11083-cds]; intron [Dvir\GJ11083-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GAGGCGGTGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCGGCGGCAATGTAAGCAATATTTGTGTTATGCAACTCGCGTTTTAATTGTGAGTCTAAAGATATCATCATTAAAATTAGTTAAATACTCATTCTGATATAGACTAACCATGAAAACCTCCGACTATATTGATATATATGTACGTATAGAGAATGAGCCCATTAAAATGTACAGCAAATTAGTTAGAAAAAGTTTTCTTAATAATTTTTTAA
***********************************************************************....(((.(((((.((.((.((((((....(((((.......(((.(((.....))).))).))))))))))).)).)).)))))...)))..........******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060681
Argx9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 V053
head
 M061
embryo
 SRR060671
9x160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 M028
head
 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 GSM1528803
follicle cells		 V047
embryo
 SRR060667
160_females_carcasses_total
 SRR060659
Argentina_testes_total
 SRR060657
140_testes_total
 SRR1106720
embryo_8-10h
.......................................................................................................................................................AAAACCTCCGACTATATTGAT............................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GAGGCGGTGGAGGAGGAGGAGGAGGAGG............................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CAACTCGCGTTTTAATTGTGA............................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GTGGAGGAGGAGGAGGAGGAGGAGGAG.......................................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GGAGGAGGAGGCGGCGGCGGCGGC............................................................................................................................................................................................................ 24 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GCGGTGGAGGAGGAGGAGGAGGAGGA.............................................................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GGAGGAGGAGGAGGAGGAGGAGGA........................................................................................................................................................................................................................... 24 0 20 0.35 7 0 6 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....CGGTGGAGGAGGAGGAGGAGGAGGA.............................................................................................................................................................................................................................. 25 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GAGGAGGAGGAGGAGGAGGAGGA........................................................................................................................................................................................................................... 23 0 20 0.30 6 0 3 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0
............GAGGCGGAGGAGGCGGAGGAGGCGGC..................................................................................................................................................................................................................... 26 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....GGTGGAGGAGGAGGAGGAGGAGGAG............................................................................................................................................................................................................................. 25 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....CGGTGGAGGAGGAGGAGGAGGA................................................................................................................................................................................................................................. 22 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GTGGAGGAGGAGGAGGAGGAGGCGGC..................................................................................................................................................................................................................... 26 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GCGGGGGAGGAGGAGGAGGAGGAGGA.............................................................................................................................................................................................................................. 26 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........GGAGGAGGAGGAGGAGGAGGA........................................................................................................................................................................................................................... 21 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GGTGGAGGAGGAGGAGGAGGAGGA.............................................................................................................................................................................................................................. 24 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................GGAGGAGGAGGCGGTGGCGGCGGC............................................................................................................................................................................................................ 24 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GGAGGAGGCGGCGGCGGC............................................................................................................................................................................................................... 18 0 12 0.17 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TGGAGGAGGAGGAGGAGGAGGAGGA........................................................................................................................................................................................................................... 25 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........GAGGAGGAGGAGGAGGAGGAGGAGG......................................................................................................................................................................................................................... 25 0 20 0.15 3 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0
........................GAGGAGGAGGCGGCGGCGGCG.............................................................................................................................................................................................................. 21 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AGGAGGAGGAGGCGGCGGC.................................................................................................................................................................................................................. 19 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................GAGGAGGAGGAGGCGGCGG................................................................................................................................................................................................................... 19 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGGAGGCGGCGGCGGCGGC............................................................................................................................................................................................................ 19 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GGTGGAGGAGGAGGAGGAGGA................................................................................................................................................................................................................................. 21 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GGAGGAGGAGGAGGAGGAGGAGGC........................................................................................................................................................................................................................ 24 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GGAGGAGGAGGAGGCGGCG.................................................................................................................................................................................................................... 19 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................GGAGGAGGAGGCGGCGGC.................................................................................................................................................................................................................. 18 0 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................GGAGGAGGCGGCCGCGGC............................................................................................................................................................................................................... 18 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................GGAGGAGGCGGAGGCGGCGGC.................................................................................................................................................................................................................. 21 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................GGAGGAGGCGGAGGCGGCGGC............................................................................................................................................................................................................ 21 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................GGAGGAGGAGGAGGCGGC..................................................................................................................................................................................................................... 18 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....GGTGGAGGAGGAGGAGGA.................................................................................................................................................................................................................................... 18 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GGAGGAGGAGGAGGAGGAGGA.............................................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........GAGGAGGAGGAGGAGGAGGAGGAG.......................................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........GGAGGAGGAGGAGGAGGA................................................................................................................................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........AGGAGGAGGAGGAGGAGGAGGAGG......................................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GGAGGAGGAGGAGGAGGAGGAGGAGG......................................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CACCAAACTAGTTAGGAAA...................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GGAGGAGGCGGCGGAGGC............................................................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................AGGAGGACGCGGCGGC.................................................................................................................................................................................................................. 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........AGGAGGAGGAGGAGGAGGAGGA........................................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CGTTGGCGGAGGAGGGGGAGGA................................................................................................................................................................................................................................. 22 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTCCGCCACCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGTTACATTCGTTATAAACACAATACGTTGAGCGCAAAATTAACACTCAGATTTCTATAGTAGTAATTTTAATCAATTTATGAGTAAGACTATATCTGATTGGTACTTTTGGAGGCTGATATAACTATATATACATGCATATCTCTTACTCGGGTAATTTTACATGTCGTTTAATCAATCTTTTTCAAAAGAATTATTAAAAAATT
*******************************************************************************....(((.(((((.((.((.((((((....(((((.......(((.(((.....))).))).))))))))))).)).)).)))))...)))..........*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 SRR060670
9_testes_total
 M027
male body		 V116
male body		 V047
embryo
...........................................................................AGCGCAAAATTAACACTCAGA........................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.....................................................................................TAACACTCAGGTTTCTACAGTA................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................CTCTTACTCGGGTTACTTT............................................. 19 2 5 0.20 1 0 1 0 0 0
....................CCTCCTCCTTCTCCGCCGCCGTCTC.............................................................................................................................................................................................................. 25 3 15 0.07 1 0 0 1 0 0
...............................................................................................AGTACTATAGTAGTAATTT......................................................................................................................................... 19 2 15 0.07 1 0 0 0 1 0
...............................................................................................................................................................................................................................TCTTTTTCATAAGAATTGTAA....... 21 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:9491982-9492232 + dvi_4554 GAGGCGGTGGAGGAGGAGGAGGAGGA---GGAGGAGGCGGCGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTCGCGTTTTAAT---T--GTGAGTCTAA------A-------------------------------------GAT----ATCATCATTAAAATTAGTTAAA------TACTCATTCTGATATAGACTAACCATGAAAACCTCCG--ACTATATT-G----ATATATAT---------GTACGTA-----TAG----AG---AATGAGCCCATTAAAATGTACAGCAAATTAGTTAGAAAAAGTT-TTCTTAATAATTTTTTAA
droMoj3 scaffold_6540:24563440-24563685 + GAGGCGGCGGCGGTGGCGGTGGCACT---TCCGGTGGTGGCGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTAACGTTTTAAT---T--GTGAGTCCCA------A-------------------------------------AGT----GTGA--------ATTAGCTGTA------GACTCAATC-------GACATTTCCCGAAAATCGCAAATACTAAATA-G----TTATGCATAAATTCAATGTTCATTCAATGTAA----CG---AAT-------TTGTAGTGTGCGAAAAATTAAAAAAAAAAAATTATTCATAACATTTATTGAG
droGri2 scaffold_14830:1918839-1919014 + GTGGTGGTGGCGGAGGTGGTTC------------TGGTGGCGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTCGCGTTTTAAT---T--GTGAGTGTAA------A-------------------------------------AAT----GTGATCAG----TTTAGATATA------GATACGATCTGAT--AGATTACTAAACAAAGACATAA--AATACATTAG----TTATTTAT---------ATGCGTA-----TAC----A-----------------------------------------------------------------G
droWil2 scf2_1100000004902:304246-304339 - GAGGAGGAGGAGGAGCAGGTGGTGCA---GGAGGAGGCGGCGGTGGTGGCAAT-GTAAGCAATATTTGTGTTATGCAACTCAACTATTAAT---T--GTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:22817687-22817806 + GTGGTGGTGGAGGAGGA------------------GGTGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACATGCGTATTAAT---T--GTGAGTTAAG------ATACTGATTATCATCATCTAATT------------------------------------T-------------------------------------------------------------------------------------GCTTA-----AGCTTTCA------------------------------------------------------------------
droPer2 scaffold_3:5595356-5595507 + GTGGTGGAGGAGGAGGTGG---------------AGGCGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACATGCGTATTAAT---T--GTGAGTTAAG------ATACTGATTATCATCATCTAATT------------------------------------T-------------------------------------------------------------------------------------GCTTA-----AGCTTTCAACTGGAGATGC--ATATAAATCAACTGAGA-----------------------------------A
droAna3 scaffold_13340:4371656-4371743 - GTGGCGGCGGAGGCGGAGGAGGTGGTGGAGGAGGTGGTGGTGGCGGCGCCAAT-GTAAGCAATATTTGTGTTATGCAACTAACATTCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396570:139816-140094 + GTGGCGGTGGAGGGGGAGGCGGTGGTGGAGGAGGTGGTGGCGGTGGCGCCAAT-GTAAGCAATATTTGTGTTATGCAACTAACATTCTACTAATTAAGTGAGTTTAA------CTATTGTAAATCAT------AGTCCTACATCCAGATAAAGTTGGCTTTATCCCTAAACTTAGTTAATAATATTAACCCATTTTAAAATAGACCAA--ATGAT-----------------TGGCTAAATATACAT---------ATTCC---------T----AA---TATAAGC--ATAATAACCACCAGCAATTGAATTTTAATATCCT-TTTTTCAAAAA---TTAA
droKik1 scf7180000302383:301017-301159 - GTGGCGGAGGAGGAGGCGGAGGAGGA---GGCGGAGGAGGAGGCGGAGGTACTTGCCCGC----------------GACCTTCG-----GC---T--GAGACTTTAAGGGTAAGTATTGGTT-TAAAGATAAAACT------------------------------------T-------------------------------------------------------------------------------------ACTTA-----AGAAACCTATTTTATATTA--GTT-AAAAAACC----------------------------------------T
droFic1 scf7180000453812:1060762-1060856 - GAGGAGGAGGAGGTGGAGGAGGGGGT------GGAGGAGGCGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTAACTAACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490967:29036-29156 - GAGGAGGAGGAGGTGGTGGAGGGGGT---GGAGGCGGAGGCGGTGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGCACTAAT---T--GTGAGTCTAA------CTACTTAATATCTTCATCTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779739:22595-22692 + GAGGAGGGGGTGGCGGGGGAGGAGGA---GGAGGAGGCGGTGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302402:9768498-9768595 - GCGGCGGCGGAGGAGGAGGTGGTGGA---GGTGGCGGAGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415199:116283-116380 + GAGGAGGAGGAGGAGGTGGTGGAGGG---GGCGGAGGAGGCGGTGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409615:269970-270101 + GCGGTGGTGGAGGCGGAGGAGGTGGTGGTGGTGGAGGAGGCGGTGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA------CTACTTATAATCTTCATCTAAGT--------------------------------------------------------------------------------------------------------------------------GCTTA-----TTC-----------------------------------------------------------------------
dm3 chr3R:8040561-8040649 + GCGGTGGAGGAGGAGGTGGCGGT------------GGTGGAGGCGGGGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTTCTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3r:13069365-13069447 - GAGGAGGAGGTGGCGGT------------------GGTGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_0:13935899-13935983 - A----GGAGGAGGAAGTGGCGG------------TGGTGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:12356914-12357002 + GCGGAGGAGGAGGAGGTGGCGGT------------AGTGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:13579432-13579520 - GTGGAGGAGGAGGAGGTGGAGGT------------GGTGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GAGGCGGTGGAGGAGGAGGAGGAGGA---GGAGGAGGCGGCGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTCGCGTTTTAAT---T--GTGAGTCTAA------A-------------------------------------GAT----ATCATCATTAAAATTAGTTAAA------TACTCATTCTGATATAGACTAACCATGAAAACCTCCG--ACTATATT-G----ATATATAT---------GTACGTA-----TAG----AG---AATGAGCCCATTAAAATGTACAGCAAATTAGTTAGAAAAAGTT-TTCTTAATAATTTTTTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................AAAACCTCCG--ACTATATT-G----AT.....................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
GAGGCGGTGGAGGAGGAGGAGGAGGA---GG.......................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................CAACTCGCGTTTTAAT---T--GTGA.................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......GTGGAGGAGGAGGAGGAGGA---GGAGGAG..................................................................................................................................................................................................................................................................................................................2720.501000000000000000000000000000000000000000000000000000000000000010
.......................GGA---GGAGGAGGCGGCGGCGGCGGC....................................................................................................................................................................................................................................................................................................2420.501000000000000000000000010000000000000000000000000000000000000000
...GCGGTGGAGGAGGAGGAGGAGGA---GGA......................................................................................................................................................................................................................................................................................................................2620.501000000000000000000000000000000000000000000000000000000000000010
........GGAGGAGGAGGAGGAGGA---GGAGGA...................................................................................................................................................................................................................................................................................................................24200.357006000000000000000000000000000000000000000000000000000000000100
....CGGTGGAGGAGGAGGAGGAGGA---GGA......................................................................................................................................................................................................................................................................................................................2530.331000000000000000000000000010000000000000000000000000000000000000
.........GAGGAGGAGGAGGAGGA---GGAGGA...................................................................................................................................................................................................................................................................................................................23200.306013000000000000001000000010000000000000000000000000000000000000
.....GGTGGAGGAGGAGGAGGAGGA---GGAG.....................................................................................................................................................................................................................................................................................................................2540.251000000000000000000000100000000000000000000000000000000000000000
....CGGTGGAGGAGGAGGAGGAGGA---.........................................................................................................................................................................................................................................................................................................................2240.251000000000000000000000000000000000000000000000000000000000000010
...........GGAGGAGGAGGAGGA---GGAGGA...................................................................................................................................................................................................................................................................................................................21200.204004000000000000000000000000000000000000000000000000000000000000
.....GGTGGAGGAGGAGGAGGAGGA---GGA......................................................................................................................................................................................................................................................................................................................2450.201000000000000000000000000000000000000000000000000000000000000100
.............................GGAGGAGGCGGCGGCGGC.......................................................................................................................................................................................................................................................................................................18120.172002000000000000000000000000000000000000000000000000000000000000
.......TGGAGGAGGAGGAGGAGGA---GGAGGA...................................................................................................................................................................................................................................................................................................................2560.171000000000000000010000000000000000000000000000000000000000000000
.........GAGGAGGAGGAGGAGGA---GGAGGAGG.................................................................................................................................................................................................................................................................................................................25200.153000100010000000000000000000000000000000000000000000000000001000
........................GA---GGAGGAGGCGGCGGCGGCG......................................................................................................................................................................................................................................................................................................2170.141001000000000000000000000000000000000000000000000000000000000000
......................AGGA---GGAGGAGGCGGCGGC..........................................................................................................................................................................................................................................................................................................1970.141000000000000000000010000000000000000000000000000000000000000000
.....................GAGGA---GGAGGAGGCGGCGG...........................................................................................................................................................................................................................................................................................................19100.101001000000000000000000000000000000000000000000000000000000000000
...............................AGGAGGCGGCGGCGGCGGC....................................................................................................................................................................................................................................................................................................19100.101000000000000000000000000000000000000000000000000000000000000010
.....GGTGGAGGAGGAGGAGGAGGA---.........................................................................................................................................................................................................................................................................................................................21100.101000000000000000000000010000000000000000000000000000000000000000
...........GGAGGAGGAGGAGGA---GGAGGAGGC................................................................................................................................................................................................................................................................................................................24100.101001000000000000000000000000000000000000000000000000000000000000
....................GGAGGA---GGAGGAGGCGGCG............................................................................................................................................................................................................................................................................................................19110.091000000000100000000000000000000000000000000000000000000000000000
.......................GGA---GGAGGAGGCGGCGGC..........................................................................................................................................................................................................................................................................................................18130.081010000000000000000000000000000000000000000000000000000000000000
....................GGAGGA---GGAGGAGGCGGC.............................................................................................................................................................................................................................................................................................................18150.071000000000000000000000000000000000000000000000000000000000001000
.....GGTGGAGGAGGAGGAGGA...............................................................................................................................................................................................................................................................................................................................18190.051001000000000000000000000000000000000000000000000000000000000000
........GGAGGAGGAGGAGGAGGA---GGA......................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000100
.........GAGGAGGAGGAGGAGGA---GGAGGAG..................................................................................................................................................................................................................................................................................................................24200.051000000000000000001000000000000000000000000000000000000000000000
........GGAGGAGGAGGAGGAGGA---.........................................................................................................................................................................................................................................................................................................................18200.051010000000000000000000000000000000000000000000000000000000000000
..........AGGAGGAGGAGGAGGA---GGAGGAGG.................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
........GGAGGAGGAGGAGGAGGA---GGAGGAGG.................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
..........AGGAGGAGGAGGAGGA---GGAGGA...................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GAGGCGGCGGCGGTGGCGGTGGCACT---TCCGGTGGTGGCGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTAACGTTTTAAT---T--GTGAGTCCCA------A-------------------------------------AGT----GTGA--------ATTAGCTGTA------GACTCAATC-------GACATTTCCCGAAAATCGCAAATACTAAATA-G----TTATGCATAAATTCAATGTTCATTCAATGTAA----CG---AAT-------TTGTAGTGTGCGAAAAATTAAAAAAAAAAAATTATTCATAACATTTATTGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................CT---TCCGGTGGTGGCGGCG.........................................................................................................................................................................................................................................................................................................1811.001100000
.AGGCGGCGGCGGTGGCGG...................................................................................................................................................................................................................................................................................................................................18110.091000100
................................GGTGGTGGCGGCGGCGGC....................................................................................................................................................................................................................................................................................................18200.051100000
droGri2
GTGGTGGTGGCGGAGGTGGTTC------------TGGTGGCGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTCGCGTTTTAAT---T--GTGAGTGTAA------A-------------------------------------AAT----GTGATCAG----TTTAGATATA------GATACGATCTGAT--AGATTACTAAACAAAGACATAA--AATACATTAG----TTATTTAT---------ATGCGTA-----TAC----A-----------------------------------------------------------------GSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GAGGAGGAGGAGGAGCAGGTGGTGCA---GGAGGAGGCGGCGGTGGTGGCAAT-GTAAGCAATATTTGTGTTATGCAACTCAACTATTAAT---T--GTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................GGAGGCGGCGGTGGTGGCA...................................................................................................................................................................................................................................................................................................1911.00101000
........................CA---GGAGGAGGCGGCGGTGGTGG.....................................................................................................................................................................................................................................................................................................2211.00101000
.................................GAGGCGGCGGTGGTGGCAAT-................................................................................................................................................................................................................................................................................................2011.00101000
...............................AGGAGGCGGCGGTGGTGG.....................................................................................................................................................................................................................................................................................................1870.14101000
dp5
GTGGTGGTGGAGGAGGA------------------GGTGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACATGCGTATTAAT---T--GTGAGTTAAG------ATACTGATTATCATCATCTAATT------------------------------------T-------------------------------------------------------------------------------------GCTTA-----AGCTTTCA------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...GTGGTGGAGGAGGA------------------GGTGGAGGCGGCG......................................................................................................................................................................................................................................................................................................2713.0030000003000
.....GGTGGAGGAGGA------------------GGTGGAGGCGGC.......................................................................................................................................................................................................................................................................................................2412.0020100001000
GTGGTGGTGGAGGAGGA------------------GGTGGAGGC..........................................................................................................................................................................................................................................................................................................2612.0020000011000
...GTGGTGGAGGAGGA------------------GGTGGAGGCGGC.......................................................................................................................................................................................................................................................................................................2612.0020100001000
........GGAGGAGGA------------------GGTGGAGGCGGCGGC....................................................................................................................................................................................................................................................................................................2412.0020101000000
...........GGAGGA------------------GGTGGAGGCGGCGGC....................................................................................................................................................................................................................................................................................................2112.0020200000000
........GGAGGAGGA------------------GGTGGAGGCGGC.......................................................................................................................................................................................................................................................................................................2111.0010100000000
..GGTGGTGGAGGAGGA------------------GGTGGAGGCGGC.......................................................................................................................................................................................................................................................................................................2711.0010000001000
......GTGGAGGAGGA------------------GGTGGAGGCGGCGGC....................................................................................................................................................................................................................................................................................................2611.0010100000000
.TGGTGGTGGAGGAGGA------------------GGTGGAGGCGG........................................................................................................................................................................................................................................................................................................2711.0010000001000
......GTGGAGGAGGA------------------GGTGGAGGCGGCGGCA...................................................................................................................................................................................................................................................................................................2711.0010000001000
..GGTGGTGGAGGAGGA------------------GGTGGA.............................................................................................................................................................................................................................................................................................................2120.5010100000000
...........GGAGGA------------------GGTGGAGGCGGC.......................................................................................................................................................................................................................................................................................................1820.5010100000000
.TGGTGGTGGAGGAGGA------------------GGTGGA.............................................................................................................................................................................................................................................................................................................2220.5010000001000
...GTGGTGGAGGAGGA------------------GGTGG..............................................................................................................................................................................................................................................................................................................1930.3310000010000
..............GGA------------------GGTGGAGGCGGCGGC....................................................................................................................................................................................................................................................................................................1840.2510100000000
.......TGGAGGAGGA------------------GGTGGAGGC..........................................................................................................................................................................................................................................................................................................1960.1710100000000
.....GGTGGAGGAGGA------------------GGTGGA.............................................................................................................................................................................................................................................................................................................18110.0910000000010
...............GA------------------GGTGGAGGCGGCGGCC...................................................................................................................................................................................................................................................................................................18140.0710000010000
droPer2
GTGGTGGAGGAGGAGGTGG---------------AGGCGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACATGCGTATTAAT---T--GTGAGTTAAG------ATACTGATTATCATCATCTAATT------------------------------------T-------------------------------------------------------------------------------------GCTTA-----AGCTTTCAACTGGAGATGC--ATATAAATCAACTGAGA-----------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........GAGGAGGTGG---------------AGGCGGAGGCGGCGGC....................................................................................................................................................................................................................................................................................................2613.003000003
...GTGGAGGAGGAGGTGG---------------AGGCGGAGGC..........................................................................................................................................................................................................................................................................................................2613.003000003
..GGTGGAGGAGGAGGTGG---------------AGGCGG..............................................................................................................................................................................................................................................................................................................2312.002000002
GTGGTGGAGGAGGAGGTGG---------------AGGCGG..............................................................................................................................................................................................................................................................................................................2511.001000001
..GGTGGAGGAGGAGGTGG---------------AGGCG...............................................................................................................................................................................................................................................................................................................2211.001000001
...GTGGAGGAGGAGGTGG---------------AGGCGGAGGCG.........................................................................................................................................................................................................................................................................................................2711.001000001
..GGTGGAGGAGGAGGTGG---------------AGGCGGAGGC..........................................................................................................................................................................................................................................................................................................2711.001000001
.TGGTGGAGGAGGAGGTGG---------------AGGCGGAG............................................................................................................................................................................................................................................................................................................2611.001000001
GTGGTGGAGGAGGAGGTGG---------------AGGCGGA.............................................................................................................................................................................................................................................................................................................2611.001000001
..GGTGGAGGAGGAGGTGG---------------AGGCGGAG............................................................................................................................................................................................................................................................................................................2511.001000001
............GAGGTGG---------------AGGCGGAGGCGGCGGC....................................................................................................................................................................................................................................................................................................2311.001000001
...........GGAGGTGG---------------AGGCGGAGGCGGCGGC....................................................................................................................................................................................................................................................................................................2411.001000001
......GAGGAGGAGGTGG---------------AGGCGGAGGCGGCG......................................................................................................................................................................................................................................................................................................2711.001000001
GTGGTGGAGGAGGAGGTGG---------------AGG.................................................................................................................................................................................................................................................................................................................2211.001000001
............GAGGTGG---------------AGGCGGAGGCGGC.......................................................................................................................................................................................................................................................................................................2020.501000001
.........GAGGAGGTGG---------------AGGCGGAGG...........................................................................................................................................................................................................................................................................................................1920.501000001
..GGTGGAGGAGGAGGTGG---------------A...................................................................................................................................................................................................................................................................................................................18120.334000013
..GGTGGAGGAGGAGGTGG---------------AG..................................................................................................................................................................................................................................................................................................................19110.091000001
droAna3
GTGGCGGCGGAGGCGGAGGAGGTGGTGGAGGAGGTGGTGGTGGCGGCGCCAAT-GTAAGCAATATTTGTGTTATGCAACTAACATTCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................GTGGTGGAGGAGGTGGTGGTGGCGGC.......................................................................................................................................................................................................................................................................................................2619.009000036
.......................GGTGGAGGAGGTGGTGGTGGCGGC.......................................................................................................................................................................................................................................................................................................2428.00160000214
..................GAGGTGGTGGAGGAGGTGGTGGTGGC..........................................................................................................................................................................................................................................................................................................2615.005000014
........GGAGGCGGAGGAGGTGGTGGAGGA......................................................................................................................................................................................................................................................................................................................2424.509000009
GTGGCGGCGGAGGCGGAGGAGGTGG.............................................................................................................................................................................................................................................................................................................................2514.004000013
..................GAGGTGGTGGAGGAGGTGGTGGTGG...........................................................................................................................................................................................................................................................................................................2514.004100003
.........GAGGCGGAGGAGGTGGTGGAGGAGGTG..................................................................................................................................................................................................................................................................................................................2713.003000030
...............GAGGAGGTGGTGGAGGAGGTGGTGG..............................................................................................................................................................................................................................................................................................................2512.002000002
.....................GTGGTGGAGGAGGTGGTGGTGGCGG........................................................................................................................................................................................................................................................................................................2512.002000002
..................GAGGTGGTGGAGGAGGTGGTGGTGGCG.........................................................................................................................................................................................................................................................................................................2712.002000011
...............GAGGAGGTGGTGGAGGAGGTGGTG...............................................................................................................................................................................................................................................................................................................2412.002000002
....................GGTGGTGGAGGAGGTGGTGGTGGC..........................................................................................................................................................................................................................................................................................................2412.002000002
...............GAGGAGGTGGTGGAGGAGGTGGTGGT.............................................................................................................................................................................................................................................................................................................2612.002000011
.......................GGTGGAGGAGGTGGTGGTGGCGGCG......................................................................................................................................................................................................................................................................................................2512.002000002
.................GGAGGTGGTGGAGGAGGTGGT................................................................................................................................................................................................................................................................................................................2111.001000010
...............GAGGAGGTGGTGGAGGAGGTGG.................................................................................................................................................................................................................................................................................................................2211.001000001
....................GGTGGTGGAGGAGGTGGTGGTGGCG.........................................................................................................................................................................................................................................................................................................2511.001000001
...................AGGTGGTGGAGGAGGTGGTGGTGGCG.........................................................................................................................................................................................................................................................................................................2611.001000010
...GCGGCGGAGGCGGAGGAGGTGGT............................................................................................................................................................................................................................................................................................................................2311.001000010
...................AGGTGGTGGAGGAGGTGGTGGTGG...........................................................................................................................................................................................................................................................................................................2411.001000001
....................GGTGGTGGAGGAGGTGGTGGT.............................................................................................................................................................................................................................................................................................................2111.001000001
.................GGAGGTGGTGGAGGAGGTGGTGGT.............................................................................................................................................................................................................................................................................................................2411.001000001
......GCGGAGGCGGAGGAGGTGGTGGAGGAG.....................................................................................................................................................................................................................................................................................................................2711.001000100
........GGAGGCGGAGGAGGTGGTGGAGGAA.....................................................................................................................................................................................................................................................................................................................2521.002000002
....................GGTGGTGGAGGAGGTGGTGGTGGCT.........................................................................................................................................................................................................................................................................................................2511.001000001
.......................GGTGGAGGAGGTGGTGGTGGCGGCGCCA...................................................................................................................................................................................................................................................................................................2811.001000001
...........GGCGGAGGAGGTGGTGGAGGA......................................................................................................................................................................................................................................................................................................................2121.002000002
..................GAGGTGGTGGAGGAGGTGGTGGTG............................................................................................................................................................................................................................................................................................................2411.001000001
.................GGAGGTGGTGGAGGAGGT...................................................................................................................................................................................................................................................................................................................1820.501000010
.......................GGTGGAGGAGGTGGTGGTGGCGG........................................................................................................................................................................................................................................................................................................2320.501000001
.........GAGGCGGAGGAGGTGGTGGAGG.......................................................................................................................................................................................................................................................................................................................2220.501000010
..........................GGAGGAGGTGGTGGTGGCGGC.......................................................................................................................................................................................................................................................................................................2120.501100000
..........AGGCGGAGGAGGTGGTGGAG........................................................................................................................................................................................................................................................................................................................2020.501000001
.........GAGGCGGAGGAGGTGGTGGA.........................................................................................................................................................................................................................................................................................................................2020.501000001
.......................GGTGGAGGAGGTGGTGGTGGC..........................................................................................................................................................................................................................................................................................................2120.501000010
.......................GGTGGAGGAGGTGGTGGT.............................................................................................................................................................................................................................................................................................................1830.331100000
...........GGCGGAGGAGGTGGTGGA.........................................................................................................................................................................................................................................................................................................................1830.331100000
....................GGTGGTGGAGGAGGTGGTGG..............................................................................................................................................................................................................................................................................................................2050.201000001
...............GAGGAGGTGGTGGAGGAGG....................................................................................................................................................................................................................................................................................................................1970.141000001
................AGGAGGTGGTGGAGGAGG....................................................................................................................................................................................................................................................................................................................1870.141000001
droBip1
GTGGCGGTGGAGGGGGAGGCGGTGGTGGAGGAGGTGGTGGCGGTGGCGCCAAT-GTAAGCAATATTTGTGTTATGCAACTAACATTCTACTAATTAAGTGAGTTTAA------CTATTGTAAATCAT------AGTCCTACATCCAGATAAAGTTGGCTTTATCCCTAAACTTAGTTAATAATATTAACCCATTTTAAAATAGACCAA--ATGAT-----------------TGGCTAAATATACAT---------ATTCC---------T----AA---TATAAGC--ATAATAACCACCAGCAATTGAATTTTAATATCCT-TTTTTCAAAAA---TTAASizeHit CountTotal NormTotal
No Reads
droKik1
GTGGCGGAGGAGGAGGCGGAGGAGGA---GGCGGAGGAGGAGGCGGAGGTACTTGCCCGC----------------GACCTTCG-----GC---T--GAGACTTTAAGGGTAAGTATTGGTT-TAAAGATAAAACT------------------------------------T-------------------------------------------------------------------------------------ACTTA-----AGAAACCTATTTTATATTA--GTT-AAAAAACC----------------------------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
GAGGAGGAGGAGGTGGAGGAGGGGGT------GGAGGAGGCGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTAACTAACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GAGGAGGAGGAGGTGGTGGAGGGGGT---GGAGGCGGAGGCGGTGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGCACTAAT---T--GTGAGTCTAA------CTACTTAATATCTTCATCTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GAGGAGGGGGTGGCGGGGGAGGAGGA---GGAGGAGGCGGTGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCGGCGGCGGAGGAGGAGGTGGTGGA---GGTGGCGGAGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GAGGAGGAGGAGGAGGTGGTGGAGGG---GGCGGAGGAGGCGGTGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GCGGTGGTGGAGGCGGAGGAGGTGGTGGTGGTGGAGGAGGCGGTGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA------CTACTTATAATCTTCATCTAAGT--------------------------------------------------------------------------------------------------------------------------GCTTA-----TTC-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GCGGTGGAGGAGGAGGTGGCGGT------------GGTGGAGGCGGGGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTTCTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...GTGGAGGAGGAGGTGGCGGT------------GGTGGAG............................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200010000000
GCGGTGGAGGAGGAGGTGGCGGT------------GG.................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000
....TGGAGGAGGAGGTGGCGGT------------GGTGGAG............................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000
..GGTGGAGGAGGAGGTGGC..................................................................................................................................................................................................................................................................................................................................1822.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000020001000000
GCGGTGGAGGAGGAGGTGGCGGT------------GGT................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000
...GTGGAGGAGGAGGTGGCGGT------------GGTGG..............................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000
.......AGGAGGAGGTGGCGGT------------GGTGGAGGC..........................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000
.CGGTGGAGGAGGAGGTGGC..................................................................................................................................................................................................................................................................................................................................1921.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001010000000000
............GAGGTGGCGGT------------GGTGGAGGCGGGGG.....................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...GTGGAGGAGGAGGTGGCGGT------------G..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................GCGGT------------GGTGGAGGCGGGG......................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......AGGAGGAGGTGGCGGT------------GGTGGAGGCG.........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............GAGGTGGCGGT------------GGTGGAGGCG.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
GCGGTGGAGGAGGAGGTGGCGGT------------G..................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....TGGAGGAGGAGGTGGCGGT------------GGTGGA.............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....GGAGGAGGAGGTGGCGGT------------GGTGGAG............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................CGGT------------GGTGGAGGCGGGGGC....................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.............AGGTGGCGGT------------GGTGGAGGCGGG.......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.CGGTGGAGGAGGAGGTGGCGGT------------GGTG...............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............GAGGTGGCGGT------------GGTGGAGGC..........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............GAGGTGGCGGT------------GGTGGAGGCGGGGGC....................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..GGTGGAGGAGGAGGTGGCGGT------------...................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...GTGGAGGAGGAGGTGGCGG................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............GAGGTGGCGGT------------GGTGGAGGCGGC.......................................................................................................................................................................................................................................................................................................2330.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
.CGGTGGAGGAGGAGGTGGCGC................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..............GGTGGCGGT------------GGTGGAGGCG.........................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....GGAGGAGGAGGTGGCGGT------------GGTGG..............................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....GGAGGAGGAGGTGGCGGT------------...................................................................................................................................................................................................................................................................................................................1860.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000
.............AGGTGGCGGT------------GGTGGAGGCGGA.......................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........GAGGAGGTGGCGGT------------GGTGGAGGCGGAT......................................................................................................................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGGTGGAGGAGGAGGTGG...................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
................TGGCGGT------------GGTGGAGGCGG........................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....TGGAGGAGGAGGTGGCGGT------------GGTGGT.............................................................................................................................................................................................................................................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....GGAGGAGGAGGTGGCGGT------------G..................................................................................................................................................................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GAGGAGGTGGCGGT------------GGTT...............................................................................................................................................................................................................................................................................................................18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GAGGAGGAGGTGGCGGT------------------GGTGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......GAGGTGGCGGT------------------GGTGGAGGCGGCGGC....................................................................................................................................................................................................................................................................................................2611.00100010000000000000
droSec2
A----GGAGGAGGAAGTGGCGG------------TGGTGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............GTGGCGG------------TGGTGGAGGCGGC.......................................................................................................................................................................................................................................................................................................2020.5010100
.................GGCGG------------TGGTGGAGGCGGCG......................................................................................................................................................................................................................................................................................................1940.2511000
droYak3
GCGGAGGAGGAGGAGGTGGCGGT------------AGTGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTGGAGGAGGAGGAGGTGGAGGT------------GGTGGAGGCGGCGGCAAT-GTAAGCAATATTTGTGTTATGCAACTTGCGTACTAAT---T--GTGAGTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............GAGGTGGAGGT------------GGTGGAGGCGGCGGC....................................................................................................................................................................................................................................................................................................2611.0010000100
...........GGAGGTGGAGGT------------GGTGGAGGC..........................................................................................................................................................................................................................................................................................................2111.0011000000
.........GAGGAGGTGGAGGT------------GGTGGAGGCGGCG......................................................................................................................................................................................................................................................................................................2711.0010000100
..........AGGAGGTGGAGGT------------GGTGGAGGC..........................................................................................................................................................................................................................................................................................................2211.0010000100
......GAGGAGGAGGTGGAGGT------------GGTGGAGGC..........................................................................................................................................................................................................................................................................................................2611.0011000000
...GAGGAGGAGGAGGTGGAGGT------------GGTGG..............................................................................................................................................................................................................................................................................................................2511.0010000010
...GAGGAGGAGGAGGTGGAGGT------------...................................................................................................................................................................................................................................................................................................................2060.1711000000
...GAGGAGGAGGAGGTGGAGG................................................................................................................................................................................................................................................................................................................................19140.0710000100

Generated: 05/19/2015 at 01:00 PM