ID:

dvi_4550

 Coordinate:

scaffold_12855:9367009-9367070 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_10022:1]; CDS [Dvir\GJ10070-cds]; exon [dvir_GLEANR_10022:2]; CDS [Dvir\GJ10070-cds]; intron [Dvir\GJ10070-in]

No Repeatable elements found

Sense Strand Reads

----------------------------------------##########--------------------------------------------------------------##################################################
CTCCCAACGGTGAAAGTAACGCACAGGACTATCTACAACAATGAGAGTTTGTAAGTTGTGGACTGGGCTGGTTATTTGGGTCTATACTAAATGCTTCTGTTGTCCTTTGCAGACAACTTGCTGCTGCTCACACTTGTGATTACCCTCTCTGCTCTGGCTGCA
**************************************************....((...((((......(((.((((((.......)))))))))......))))...))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR1106729
mixed whole adult body
 M047
female body
 M027
male body		 SRR060665
9_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 V116
male body		 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060670
9_testes_total
 SRR060655
9x160_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR1106727
larvae
 SRR060662
9x160_0-2h_embryos_total
 SRR1106728
larvae
 V053
head
 SRR060674
9x140_ovaries_total
 M061
embryo
 SRR060664
9_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
..................................................................................................................AACTTGCTGCTGCTCACACTTGT......................... 23 0 1 3.00 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CACCATGAGAGTTTGTAA............................................................................................................ 18 2 6 2.17 13 0 0 2 0 0 0 4 5 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TTACAACTTGCTGCTGCTCACACT............................ 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GAAAGTAACGCACAGGACTAT.................................................................................................................................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ATCTACAACAATGAGAGTTT................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGTAACGCACAGGACTAT.................................................................................................................................. 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GACTATCTACAACAATGAGAGT.................................................................................................................. 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TACAACTTGCTGCTGCTCACACTTGT......................... 26 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GCACAGGACTATCTACAACAATGAGAGT.................................................................................................................. 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GAAAGTAACGCACAGGACT.................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CTCCCAACGGTGAAAGTAACGCACA......................................................................................................................................... 25 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CCATGAGAGTTTGTAAC........................................................................................................... 17 2 8 1.75 14 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................CACCATGAGAGTTTGTAAC........................................................................................................... 19 3 20 1.15 23 0 0 1 2 0 0 8 2 3 0 0 0 0 1 1 1 0 0 1 0 0 0 2 0 1 0 0
.......................................................................................................................................GTGATTACCCTCTCTGCTCTGGCTG.. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TACAACTTGCTGCTGCTCAC............................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CAACGGTGAAAGTAACGCACAG........................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AACTTGCTGCTGCTCACACTT........................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GATTACCCTCTCTGCTCTG...... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CGGTGAAAGTAACGCACAG........................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................ACAACTTGCTGCTGCTCAC............................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GCACAGGACTATCTACAAC........................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CGGTGAAAGTAACGCACAGGACTAT.................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CAACGGTGAAAGTAACGCACAGGACT.................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CTCCCAACGGTGAAAGTAACGCACAG........................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GTAACGCACAGGACTATCTACAACAAT........................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................ACTATCTACAACAATGAGAG................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GTAACGCACAGGACTATCTACAACAATGAGAG................................................................................................................... 32 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CCCAACGGTGAAAGTAACGCACAGGACT.................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...CCAACGGTGAAAGTAACGCACA......................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AACGGTGAAAGTAACGCACAGGAC..................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GAAAGTAACGCACAGGCCTAT.................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TGAAAGTAACGCACAGGACT.................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GGTGAAAGTAACGCACAGGA...................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AACGGTGAAAGTAACGCACAGGACTAT.................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGTAACGCACAGGACTATCTACAA............................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CTATCTACAACAATGAGAGT.................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GTAACGCACAGGACTATCTACAACAATGAGAGT.................................................................................................................. 33 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AACGCACAGGACTATCTACAACAATGA...................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CCATGAGAGTTTGTAA............................................................................................................ 16 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AACGGTGAAAGTAACGCACAGGA...................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................ACGCACAGGACTATCTACAACAAT........................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AACGCACAGGACTATCTACAACAAT........................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................ACAACTTGCTCCTGCTCAC............................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTACAACAATGAGAGTTTA............................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CAACGGTGAAAGTAACGCACAGGA...................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TCCCAACGGTGAAAGTAACGCACAGGA...................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TATCTACAACAATGAGAGT.................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTTTGCAGACGACTTA.......................................... 18 2 5 1.00 5 0 0 0 0 0 0 0 1 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............AGTAACGCACAGGACTATCT................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TACAACTTGCTGCTGCTCACACTT........................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CAACGGTGAAAGTAACGCACAGGAC..................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GTAACGCACAGGACTATCTA............................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GTTTACAACTTGCTGCTGCTCACACT............................ 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GACTATCTACAACAATGAGA.................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................ACTATCTACAACAATGAGAGTTTAC.............................................................................................................. 25 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................ACAACTTGCTGCTGCTCACA.............................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AAAGTAACGCACAGGACTAT.................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CTCCCAACGGTGAAAGTAACGCACAGGA...................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AACGGTGAAAGTAACGCAC.......................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GCACAGGACTATCTACAACAAT........................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GTAACGCACAGGACTATCTAC.............................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TATCGACTGGGCTGGTTATT...................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATCCTTTGCAGACGACTT........................................... 18 2 11 0.91 10 0 0 0 0 0 0 0 1 0 0 0 2 0 3 0 0 2 0 1 0 0 0 0 1 0 0 0
........................................ATGAGAGTTTGTAAC........................................................................................................... 15 1 9 0.89 8 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................AGTCCTTTGCAGACGACTT........................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTTTGCAGACGACTTGA......................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................CATGAGAGTTTGTAA............................................................................................................ 15 1 10 0.20 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................ACAACAATGAGAGTTTACAACT.......................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTTTGCAGACGACTTAA......................................... 19 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........GAAGGTAACGCAGAGAACTA................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................TCCTTTGCAGACGACTTAG......................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CCAAACGGTGAAAGAAACGA............................................................................................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CACCATGAGAGTTTGTA............................................................................................................. 17 2 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GTAAAGGTAACGCAGAGGA...................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GAGGGTTGCCACTTTCATTGCGTGTCCTGATAGATGTTGTTACTCTCAAACATTCAACACCTGACCCGACCAATAAACCCAGATATGATTTACGAAGACAACAGGAAACGTCTGTTGAACGACGACGAGTGTGAACACTAATGGGAGAGACGAGACCGACGT
**************************************************....((...((((......(((.((((((.......)))))))))......))))...))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060666
160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 M027
male body		 SRR060659
Argentina_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V116
male body
.........................................................................................................................................CTAATGGGAGAGTCCAGCC...... 19 3 11 2.27 25 7 4 6 3 1 1 1 1 1
.........................................................................................................................................CTAATGGGAGAGTCCAGCCC..... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0
.............................................................................................GAAGACCACAGGATACGGC.................................................. 19 3 18 0.06 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:9366959-9367120 - dvi_4550 CTCCCAACGGTGAAAGTAACGCACAGGACTATCTACAACAATGAGAGTTTGTAAGTTGTGGACTGGGC-TGGTTATTTGGGTCTAT--ACTAAA---------------TGCTTCT-------GT-----TGTCCTTTGCAGACAACTTGCTGCTGCTCACACTTGTGATTACCCTCTCTGC---------TCTGGCTGCA
droMoj3 scaffold_6540:24452741-24452904 - CTCCAAACGGTAAAAGCAAAGAGCAGGAATATTTCTAACAATGAGAGTTTGTAAGTTCTTGAGTGGACGTGACGTTTTGAGTATTTATTGTACA---------------TACG---GC-----AT-----TGCGTTTTATAGACAACTTGCTGCTGCTCACTTTTGTGACTGCCCTGGCTTC---------TCTGGCTGCA
droGri2 scaffold_14830:1819673-1819842 - TTCTCAACGGTTAAAGCAAAGCGAAGGACTATTTACAAAAATGAGAGTTTGTAAGTTGTGGCCTGGGC--------------CCTT--TCGACTGGCCCACTATTCTAATG----TGGCACGTGTTGCCT--TGTCTTGCAGATAACGTGCTGCTGCTCACACTTGTGATTGCCCTATCATC---------GCTGGCTGCA
droWil2 scf2_1100000004521:1292842-1293000 - CTTCCAGTGGTTC--GCAAAACAACGAACTCATT---GCAATGAGAGCTTGTATGTTGG------------ATACTTTAAAACTTT--AGTACAAACTCCATATAATAATC----AGC-----TA----T-TTATTTTTCAGACAACTTACTGGTACTTACCTTTGTAACTGTACTGTTATC---------CTTTACCGGA
dp5 4_group1:3128811-3128857 - CTCCCAACAAAGGCAGTGAAACGAGCGACTATATGCGATACAGAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_6:3577254-3577298 - CTGG--------------------------------------------------------------------------------------------------------------------------------------------------GTGCTGCTCCTTCTTACAGCTGCTCTGGCTGC---------TCTGGCTGC-
droAna3 scaffold_13266:3606373-3606406 + GCAA---------------CTCACAGAACTGTCGCTAACAATGAGAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302344:805633-805694 + TATT----------------------------------------------------------------------------------------------------------------------------------CTCACCAGACAACGTTGTGTGGCTGACGCTCGTGGTCACAATATGTTC---------ACTGGTAACA
droFic1 scf7180000454038:946999-947068 + TTTTG----------------------------------------------------------------------------------------------------------------------------T-TATATCTTCAGGCTATGTAAACCTCCTAACTCTTGTGATCGTGTTATCCTCGGC------TGTTACTTTT
droEle1 scf7180000490751:258937-258993 - TCT---------------------------------------------------------------------------------------------------------------------------------------CCAGACAATGTACGCCTTCTAACGCTTGTGATCGCACTTTCCTC---------GGCGGTTGAC
droRho1 scf7180000776762:92142-92206 + CTTT-------------------------------------------------------------------------------------------------------------------------------TATTTCCCCAGACCATGTACACCTTCTATTGCTTGTGATCGCAGTATCCTC---------GACGGTGGAA
droBia1 scf7180000302421:2501460-2501559 + TGTAC----------------------------------------------------------------------------------------TAACTCCATT------------TTTTCTGTGTTCTTG-TGTATCTCCAGGCAATGTGACCCATCTAACGCTTGTGATCCTACTGTCCTCAGCGGTTCCCCTAGCTACA
droTak1 scf7180000415210:114633-114722 + TTGTT------------------------------------------------------------------------CTGTTCT--------------CTATATAA------------------TTTTTT-TGTTTCTTCAGGCAATGAAGACCATCTAACGCTTGTGATCCTACTACTCTGCTC------GGTGGCTCCA
droEug1 scf7180000409765:23507-23563 + TCT---------------------------------------------------------------------------------------------------------------------------------------TCAGGCAATTTACACCTTGTAACGCTCGTGGTCCTACTATACTC---------AGCGGTTCCA
droSec2 scaffold_12:158646-158694 - CA-----------------------------------------------------------------------------------------------------------------------------------------------ACTTGTTGCTCGTCTCGCTTGCTCTCTCACTCTCTAC---------TCTCTTTTCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTCCCAACGGTGAAAGTAACGCACAGGACTATCTACAACAATGAGAGTTTGTAAGTTGTGGACTGGGC-TGGTTATTTGGGTCTAT--ACTAAA---------------TGCTTCT-------GT-----TGTCCTTTGCAGACAACTTGCTGCTGCTCACACTTGTGATTACCCTCTCTGC---------TCTGGCTGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................AACTTGCTGCTGCTCACACTTGT..................................2313.003000000000000000102000000000000000000000000000000000000000000000
...........GAAAGTAACGCACAGGACTAT.........................................................................................................................................................................2112.002000000000000000001010000000000000000000000000000000000000000000
..............................ATCTACAACAATGAGAGTTT.......................................................................................................................................................2012.002000000000000000002000000000000000000000000000000000000000000000
..............AGTAACGCACAGGACTAT.........................................................................................................................................................................1812.002000000000000000001010000000000000000000000000000000000000000000
..........................GACTATCTACAACAATGAGAGT.........................................................................................................................................................2212.002000000000000000001010000000000000000000000000000000000000000000
....................GCACAGGACTATCTACAACAATGAGAGT.........................................................................................................................................................2812.002000000000000000001010000000000000000000000000000000000000000000
...........GAAAGTAACGCACAGGACT...........................................................................................................................................................................1912.002200000000000000000000000000000000000000000000000000000000000000
CTCCCAACGGTGAAAGTAACGCACA................................................................................................................................................................................2512.002000000000000000001000000000000000000000000000000000000000000010
.....................................................................................................................................................................GTGATTACCCTCTCTGC---------TCTGGCTG..2511.001001000000000000000000000000000000000000000000000000000000000000
....CAACGGTGAAAGTAACGCACAG...............................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................AACTTGCTGCTGCTCACACTT....................................2111.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................GATTACCCTCTCTGC---------TCTG......1911.001000000000000000001000000000000000000000000000000000000000000000
.......CGGTGAAAGTAACGCACAG...............................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................ACAACTTGCTGCTGCTCAC........................................1911.001000000000000000000010000000000000000000000000000000000000000000
....................GCACAGGACTATCTACAAC..................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......CGGTGAAAGTAACGCACAGGACTAT.........................................................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
....CAACGGTGAAAGTAACGCACAGGACT...........................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
CTCCCAACGGTGAAAGTAACGCACAG...............................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
...............GTAACGCACAGGACTATCTACAACAAT...............................................................................................................................................................2711.001000000000000000000010000000000000000000000000000000000000000000
...........................ACTATCTACAACAATGAGAG..........................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
...............GTAACGCACAGGACTATCTACAACAATGAGAG..........................................................................................................................................................3211.001000000000000000000000000000000000000000000000000000000000100000
..CCCAACGGTGAAAGTAACGCACAGGACT...........................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
...CCAACGGTGAAAGTAACGCACA................................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
.....AACGGTGAAAGTAACGCACAGGAC............................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
..........TGAAAGTAACGCACAGGACT...........................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
........GGTGAAAGTAACGCACAGGA.............................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.....AACGGTGAAAGTAACGCACAGGACTAT.........................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
..............AGTAACGCACAGGACTATCTACAA...................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
............................CTATCTACAACAATGAGAGT.........................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............GTAACGCACAGGACTATCTACAACAATGAGAGT.........................................................................................................................................................3311.001000000000000000000000000000000000000000000000000000000000100000
.................AACGCACAGGACTATCTACAACAATGA.............................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....AACGGTGAAAGTAACGCACAGGA.............................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
..................ACGCACAGGACTATCTACAACAAT...............................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.................AACGCACAGGACTATCTACAACAAT...............................................................................................................................................................2511.001100000000000000000000000000000000000000000000000000000000000000
................................CTACAACAATGAGAGTTTA......................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
....CAACGGTGAAAGTAACGCACAGGA.............................................................................................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
.TCCCAACGGTGAAAGTAACGCACAGGA.............................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
.............................TATCTACAACAATGAGAGT.........................................................................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
..............AGTAACGCACAGGACTATCT.......................................................................................................................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
....CAACGGTGAAAGTAACGCACAGGAC............................................................................................................................................................................2511.001100000000000000000000000000000000000000000000000000000000000000
...............GTAACGCACAGGACTATCTA......................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..........................GACTATCTACAACAATGAGA...........................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...........................ACTATCTACAACAATGAGAGTTTAC.....................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................ACAACTTGCTGCTGCTCACA.......................................2011.001000000000000000000010000000000000000000000000000000000000000000
............AAAGTAACGCACAGGACTAT.........................................................................................................................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
CTCCCAACGGTGAAAGTAACGCACAGGA.............................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
.....AACGGTGAAAGTAACGCAC.................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................GCACAGGACTATCTACAACAAT...............................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
...............GTAACGCACAGGACTATCTAC.....................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
........................................ATGAGAGTTTGTAAC..................................................................................................................................................1590.898000000000000000000000000000000000000000000000000000000000800000
droMoj3
CTCCAAACGGTAAAAGCAAAGAGCAGGAATATTTCTAACAATGAGAGTTTGTAAGTTCTTGAGTGGACGTGACGTTTTGAGTATTTATTGTACA---------------TACG---GC-----AT-----TGCGTTTTATAGACAACTTGCTGCTGCTCACTTTTGTGACTGCCCTGGCTTC---------TCTGGCTGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........AAAAGCAAAGAGCAGGAATATTT.......................................................................................................................................................................2312.002200000
........................AGGAATATTTCTAACAATGAGA...........................................................................................................................................................2212.002200000
.......................................................................................................................................................................GACTGCCCTGGCTTC---------TCTGGCTGC.2411.001100000
...............GCAAAGAGCAGGAATATTTCTAACAATG..............................................................................................................................................................2811.001100000
............AAAGCAAAGAGCAGGAATATT........................................................................................................................................................................2111.001000001
.........................................................................................................................................................CTGCTCACTTTTGTGACTGCCCTG........................2411.001100000
..........................................................................................................................................................TGCTCACTTTTGTGACTGCCCTGGC......................2511.001100000
..................................................................................................................................................................TTTGTGACTGCCCTGGCTTC---------T.........2111.001100000
................................................................................................................................................AACTTGCTGCTGCTCACTT......................................1911.001100000
...........AAAAGCAAAGAGCAGGAAT...........................................................................................................................................................................1911.001100000
............................................................................................................................................................CTCACTTTTGTGACTGCCCTGGCTTC---------T.........2711.001100000
....AAACGGTAAAAGCAAAGAGCAGG..............................................................................................................................................................................2311.001000001
........................................................................................................................................................................ACTGCCCTGGCTTC---------TCTGG.....1911.001100000
.......................................................................................................................................................................GACTGCCCTGGCTTC---------TCTGG.....2011.001100000
.................AAAGAGCAGGAATATTTCTA....................................................................................................................................................................2011.001000001
.......................................................................................................................................................................GACTGCCCTGGCTTC---------TCTGGC....2111.001100000
..............AGCAAAGAGCAGGAATATTT.......................................................................................................................................................................2011.001000001
.....................AGCAGGAATATTTCTAACAATGAGAGT.........................................................................................................................................................2711.001000001
...........AAAAGCAAAGAGCAGGAATATTTCT.....................................................................................................................................................................2511.001100000
........GGTAAAAGCAAAGAGCAGG..............................................................................................................................................................................1911.001000001
CTCCAAACGGTAAAAGCAAAGA...................................................................................................................................................................................2211.001000001
...........AAAAGCAAAGAGCAGGAATATTTCTA....................................................................................................................................................................2611.001100000
......................GCAGGAATATTTCTAACAATGAGAGT.........................................................................................................................................................2611.001000001
..CCAAACGGTAAAAGCAAAGA...................................................................................................................................................................................2011.001100000
....AAACGGTAAAAGCAAAGAGCA................................................................................................................................................................................2111.001000001
droGri2
TTCTCAACGGTTAAAGCAAAGCGAAGGACTATTTACAAAAATGAGAGTTTGTAAGTTGTGGCCTGGGC--------------CCTT--TCGACTGGCCCACTATTCTAATG----TGGCACGTGTTGCCT--TGTCTTGCAGATAACGTGCTGCTGCTCACACTTGTGATTGCCCTATCATC---------GCTGGCTGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CTTCCAGTGGTTC--GCAAAACAACGAACTCATT---GCAATGAGAGCTTGTATGTTGG------------ATACTTTAAAACTTT--AGTACAAACTCCATATAATAATC----AGC-----TA----T-TTATTTTTCAGACAACTTACTGGTACTTACCTTTGTAACTGTACTGTTATC---------CTTTACCGGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................AACGAACTCATT---GCAATGA.............................................................................................................................................................1923.00651000
......................AACGAACTCATT---GCAATG..............................................................................................................................................................1823.00660000
.....................CAACGAACTCATT---GCAATGA.............................................................................................................................................................2022.00440000
.................AAAACAACGAACTCATT---GCAATG..............................................................................................................................................................2311.00110000
......................AACGAACTCATT---GCAATGAGA...........................................................................................................................................................2120.50110000
.....................CAACGAACTCATT---GCAATGAGAGCT........................................................................................................................................................2520.50101000
dp5
CTCCCAACAAAGGCAGTGAAACGAGCGACTATATGCGATACAGAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTGG--------------------------------------------------------------------------------------------------------------------------------------------------GTGCTGCTCCTTCTTACAGCTGCTCTGGCTGC---------TCTGGCTGC-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GCAA---------------CTCACAGAACTGTCGCTAACAATGAGAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droKik1
TATT----------------------------------------------------------------------------------------------------------------------------------CTCACCAGACAACGTTGTGTGGCTGACGCTCGTGGTCACAATATGTTC---------ACTGGTAACASizeHit CountTotal NormTotal
No Reads
droFic1
TTTTG----------------------------------------------------------------------------------------------------------------------------T-TATATCTTCAGGCTATGTAAACCTCCTAACTCTTGTGATCGTGTTATCCTCGGC------TGTTACTTTTSizeHit CountTotal NormTotal
No Reads
droEle1
TCT---------------------------------------------------------------------------------------------------------------------------------------CCAGACAATGTACGCCTTCTAACGCTTGTGATCGCACTTTCCTC---------GGCGGTTGACSizeHit CountTotal NormTotal
No Reads
droRho1
CTTT-------------------------------------------------------------------------------------------------------------------------------TATTTCCCCAGACCATGTACACCTTCTATTGCTTGTGATCGCAGTATCCTC---------GACGGTGGAASizeHit CountTotal NormTotal
No Reads
droBia1
TGTAC----------------------------------------------------------------------------------------TAACTCCATT------------TTTTCTGTGTTCTTG-TGTATCTCCAGGCAATGTGACCCATCTAACGCTTGTGATCCTACTGTCCTCAGCGGTTCCCCTAGCTACASizeHit CountTotal NormTotal
No Reads
droTak1
TTGTT------------------------------------------------------------------------CTGTTCT--------------CTATATAA------------------TTTTTT-TGTTTCTTCAGGCAATGAAGACCATCTAACGCTTGTGATCCTACTACTCTGCTC------GGTGGCTCCASizeHit CountTotal NormTotal
No Reads
droEug1
TCT---------------------------------------------------------------------------------------------------------------------------------------TCAGGCAATTTACACCTTGTAACGCTCGTGGTCCTACTATACTC---------AGCGGTTCCASizeHit CountTotal NormTotal
No Reads
droSec2
CA-----------------------------------------------------------------------------------------------------------------------------------------------ACTTGTTGCTCGTCTCGCTTGCTCTCTCACTCTCTAC---------TCTCTTTTCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads

Generated: 05/19/2015 at 12:59 PM