ID:

dvi_4549

 Coordinate:

scaffold_12855:9366602-9366705 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.2

Flybase annnotation

CDS [Dvir\GJ10070-cds]; exon [dvir_GLEANR_10022:2]; exon [dvir_GLEANR_10022:3]; CDS [Dvir\GJ10070-cds]; intron [Dvir\GJ10070-in]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------##################################################
TGCTATAGTCTCTGGGCATGATCACGAAGGGCATTTAGCGGCATCAAGTGGTAAAGCTCCTTGCGAAACAACTCCAAAGCCCCCATGTGATAAGCCAAAGCTAACAACAACACCCCCCTGTGAAAAAACACCCATCTCACCACCACAAGCAGAGACAACACCCTGCACGACTACAACTTCTACAACTCCTTGCACAACCACATC
**************************************************************.......................(((....(((....)))....)))............*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 M047
female body
 V116
male body		 SRR060666
160_males_carcasses_total
 SRR060665
9_females_carcasses_total
 M027
male body		 SRR060668
160x9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
.........................................................................................................................................CACCACCACAAGCAGAGA................................................. 18 0 1 3.00 3 0 1 0 0 0 2 0 0 0 0
......................................................................................................AACAACAACACCCCCCTGT................................................................................... 19 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
.........CTCTGGGCATGATCACGAAGGGC............................................................................................................................................................................ 23 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
..............................................................GCGAAACAACTCCAAAGCCC.......................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................CATTTAGCGGCATCAAGTGGT........................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................CCCCATGTGATAAGCCAAA......................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............GGCATGATCACGAAGGGCAT.......................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................ATGTGATAAGCCAAAGCTAACAACAAC............................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................TAGCGGCATCAAGTGGTAAAG.................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................GAAAAAACACCCATCTCACCACCAC.......................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AACTTCTACAACTCCTTGCACAACC..... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................TCCTTGCGAAACAACTCCAA............................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTACAACTCCTTGCACAACCACAT. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................AACACCCCCCTGTGAAAAAACACCCATC.................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................CAACTCCAAAGCCCCCATGTGATA................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................AACTTCTACAACTCCTTGCAC......... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................AAACACCCATCTCACCACCACAAGCAGA................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................CAAAGCTAACAAAAACACCCCCCTGT................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................AACTCCAAAGCCCCCATGT.................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................ATCAAGTGGTAAAGCTCCTTG............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................ATCAAGTGGTAAAGCTCCT............................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................AAAGCCCCCATGTGATAAGCC............................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............GCATGATCACGAAGGGCATTT........................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................CCAAAGCCCCCATGTGATAAGC............................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................AACACCCTGCACGACTACAA............................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................ATGTGATAAGCCAAAGCTA..................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................GACAACACCCTGCACGACT................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................CCCATGTGATAAGCCAAAGCT...................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................CATTTAGCGGCATCAAGTG.......................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................ATCAAGTGGTAAAGCTCCTTGC............................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................ACAACTCCTTGCACAACCACATC 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................CTGCACGACTACAACTTCTACA.................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................CCCCCATGTGATAAGCCAAAG........................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...........................................TCAAGTGGTAAAGCTCCTTGCGAAA........................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACAAGCAGAGACAACACCCTGCACG................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................GGTAAAGCTCCTTGCGAAAC....................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................ATCTCACCACCACAAGCAGA................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GACAACACCCTGCACGACTAC.............................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...TATAGTCTCTGGGCATGATCAC................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................AACAACAACACCCCCCTGTGA................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TACAACTTCTACAACTCCTTGCAC......... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................CACCCATCTCACCACCAC.......................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................CTGCACGACTACAACTTCTAC..................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................CGAAGGGCATTTAGCGGCATCA.............................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....ATAGTCTCTGGGCATGATCACGAAGGG............................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................CCCCCATGTGATAAGCCAAAGCT...................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................AAGTGGTAAAGCTCCTTGCGA.......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............GGCATGATCACGAAGGGCATT......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
....................................................................................ATGTGATAAGCCAAAGCT...................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................CCTTGCGAAACAACTCCCA............................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..CTATAGTCTCTGGGCATGATCACGAAG............................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................AAAGCTCCTTGCGAAACAACTCCAA............................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AACTTCTACAACTCCTTGCA.......... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................CCTTGCGAAACAACTCCAAA.............................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................GCACGACTACAACTTCTACAACTCCTT............. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................ATGTGATAAGCCAAAGCTAA.................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......GTCTCTGGGCATGATCACGAAGGGC............................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CAACTCCTTGCACAACCACAT. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................ATGTGATAAGCCAAAGCTAAC................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.GCTATAGTCTCTGGGCAT......................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................ATGATCACGAAGGGCATTT........................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................AGCGGCATCAAGTGGTAAAG.................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.........CTCTGGGCATGATCACGAAG............................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................ATTTAGCGGCATCAAGTGGT........................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......GTCTCTGGGCATGATCACGAAGG.............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........CTCTGGGCATGATCACGAAGGG............................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................GTAAAGCTCCTTGCGAAACAACTCC................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................AGAGACAACACCCTGCACG................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................AAAGCTCCTTGCGAAACAACTCCAAA.............................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....ATAGTCTCTGGGCATGAT...................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................AGAGACAACACCCTGCACGACTACAACT.......................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................CCAAAGCTAACAACAACACCCCCCTGT................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................CCAAAGCTAACAACAACACCCCCCTGTGA................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................ATGATCACGAAGGGCATTTAGC..................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................CATCAAGTGGTAAAGCTCCT............................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................AAAGCTCCTTGCGAAACAACT................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................CCCATGTGATAAGCCAAAGCTAACA.................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............GGCATGATCACGAAGGGCA........................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TACAACTTCTACAACTCCTTGCACA........ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................ACTCCAAAGCCCAGATGT.................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACGATATCAGAGACCCGTACTAGTGCTTCCCGTAAATCGCCGTAGTTCACCATTTCGAGGAACGCTTTGTTGAGGTTTCGGGGGTACACTATTCGGTTTCGATTGTTGTTGTGGGGGGACACTTTTTTGTGGGTAGAGTGGTGGTGTTCGTCTCTGTTGTGGGACGTGCTGATGTTGAAGATGTTGAGGAACGTGTTGGTGTAG
***********************************************************************************.......................(((....(((....)))....)))............************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V116
male body		 SRR060667
160_females_carcasses_total
 V047
embryo
 SRR060659
Argentina_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
.........................................................................................................................CTTTGTTGTGGGTAGAGGGG............................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................GGGAAGTGCTGAAGTTGAAG........................ 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0
...............CGTACTAGGGCTGCCCGCAA......................................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................................TGGTTTCGGGGGTGCACT.................................................................................................................. 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0
.................TTCAAGTGCTACCCGTAAAT....................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................GAAGAATGGTAGTGTTCGTC.................................................... 20 3 10 0.20 2 0 0 0 0 2 0 0 0 0
......................................................................................................TTGTTGTAGTGGTCGGACACT................................................................................. 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................TGGGTCGAGTGGTGGCCTT........................................................ 19 3 8 0.13 1 0 0 0 0 0 0 1 0 0
................................................................CTTTGTGGCGGTTTCGGAGG........................................................................................................................ 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0
................................TAGATCGCCATAGCTCACC......................................................................................................................................................... 19 3 9 0.11 1 0 0 0 1 0 0 0 0 0
............................................................................................TCGGTTAGCATTGTTGTTGTG........................................................................................... 21 3 10 0.10 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................CTGTTTTGTGGTTAGGGTGG............................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................TGTTCGACACAGTTGTGGG......................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.......................................................................................................TGTTGGTGTGGCGGGAC.................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:9366552-9366755 - dvi_4549 TGC-T-ATAGTCTCTGGGCATGATCACGAAGGGCATTTAGCGGCATCAAGTGGTAAAGCTCCTTGCGAAACAACTCCAAAGCCCCCAT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAAG-------------------------------------------------------------------------------------------------------CTAA---CAACAACACCCCCCTGTG---------------------A------------------AA---------AAACA------CCCATCTC-------------AC---------------CACCACAAGCAGAGAC------AA---C------------ACCCTGCACGA----------------CT---ACAACTTC---------------------------------TACAA---------CT-CCTTGCACAACCACATC
droMoj3 scaffold_6540:24452340-24452537 - TTC-G-ATAGTCACTGGAGATGCTCACGACGATCATCTGGCGGCCCCAGGTGGTAAAGCTCCTTGCGAAACAACTCCGAAGCCACCGT-----------------------------------------------------------------------------------------------------------------GCACTAAGACAGC---CC----------------------------------------------------------CTACAGCTCCCCCACCCTGCACGAAAACAACTACCCC----------------------------------------------------------------------------------------------------------------------AAGCGCAGAATC---------------------AC---C------------AAGTGA----------------------------AACAACTACACCTTG------------------------TGAGA---------CA-ACTAGACGGACGACAAC
droGri2 scaffold_14830:1819287-1819469 - TGC-C-ATCGTGTCTGGCCACGATCACGAAACACATCATTCGGCGTTGGGTGGTCAAGCTCCATGCGGAACCACTGTGAAGCCACCGT-----------------------------------------------------------------------------------------------------------------GCGATAACCCAAAG-------------------------------------------------------------------------------------------------------CCAATTTCAACAACAAC----------CCCATG--------------------------------TGAAACA----------------------------------------------------------------CAGAC------GC---C------------CTCCACTACGA----------------CA---ACAACTCC---------------------------------AACCA---------CA-ACAACTAAAGTCACAAC
droWil2 scf2_1100000004521:7596924-7597115 - TGC-T-GCTGCTTC-TGCAACTGATTGT-----------GAGACAA---------------------------------------------------------CC---------ACAGCATGTGCCACAGCTGACACCACGACAACCACCTGCAAACCAAATGAAGCAGA------------A--------------------------------CCAA-------------C----------------A-----------------------ACAACA---------------------------------------ACAT---GC------------------------ACAACACCTA---------------------------------------------------------CGACAACCACTTG-------------------------------------CA---------------GCACGGAA-TCCACAACAACCACCTGCAA---G-----------------------------------------CCAA-ATGAAACA-CAACCCACAACAACAAC
dp5 XL_group3a:1127596-1127773 + ACG-A-TG---------------ACGAAGTG-GCACCGAGCAGCAGCTC---------------------------------------GA------------------------------------------------G----------------------TGGTGCAGC------------A--------------------------------GCAG-------------C----------------AGC-----------------------------------------------CAC--CAATAAGGTGAACGGCAG---CGACGACAGCTCG------------------------CGGGTGAAGATCGATTTGCCG----------------ACATTT---------------------G----------------AGCCA------GAGACAACGACTCC---------------GACGCCGA-------------------CGACGACGACAAC---------------------------------TAAAG---------GT-GATAGCTTACCCACTTT
droPer2 scaffold_12092:349-511 + AGC-G-ACACCAGC---------------------------GGCAGCGG---------------------------------------CAGCGA---CAC---CT---------------------------------G----------------------CGGC--AGC------------A--------------------------------GCACC-----AG--CGGCCGCACCAATTAAT---GCCGCATCAACAACAACAAAAACAGAAGTA---------------------------------------GC-----------------------------------------------------------------------------------CGCCC------------------ACAAC-------------------------AGCC----------------------------------ATAGCCTGTAAC---------ACAAATAC---------------------------------CACCCAGAAAGCACCC-CATCAAGCTGCAGCATC
droAna3 scaffold_12916:16180293-16180460 + GAC-G-ACAGCCTC-CACAACTACTAAAGAA-G----------------------------------------------------------------TAA---CCAC---------A------TCCACAGCTCTTCCCA----------------------CAAC--AAC------------C--------------------------------TCAGC-----AA--CT---------------------TCTAC---------TGAAGAAGTAACA---------------------------------------ACAT---CC------------------------ACAGCT---------------------------------------------------------------CTTCCCACAGCTATATCC-------------------AC------AA---C------------AACTGAAGACG----------------CC---ACAACATC---------------------------------CACAG---------CT-GTTGCCACAACCATGAC
droBip1 scf7180000394737:17083-17259 - TGG-C-AGCGGCGC-AGCCAGAGGCAAAAAA----------------------------------------------------------AG------TAG---TCCG---------A------GATACGGC----TACG----------------------CCATGCAAG------------GACTCTACCCCGACCCCCCACCATGCTCCAAGA-----------------------------------------------------------------------------------------------------TCACAA---CGACGACACCACCCTGTG---------------------A------------------TAAGGTC------------------------------------AC-------------------------------------TACGACAACAACAACAACACC-------------------------------TTGTGC---------------------------------CCCTA---------CA-ACGACTTCTACCACAAC
droKik1 scf7180000302809:339682-339876 - CGC-C-GCCAGCTTTGGCCATTGTCAAGGAA-GAATCAAGTAATAATAG---------------------------------------TTGTAATA---TGTA--------------------------------CCCA----------------------CAACACAAC------------A--------------------------------ACA--------------------------------ACACAAC------------------------------------------------------------------ATCATCATCA----------ACAAATAC--------------------------------AACAACAAC---------------------------------------CAAACAGACAACAAGCGAAAGCC------AC----------------------------------------------------------AACAACACAGAGGGCGTTGGCTCGCCGGGAAACAACAACAA---------CAACAGCACACAATCACACC
droFic1 scf7180000453438:41805-41976 - ATTCA-GCAGCCTC-AGTCGATTCCAGTG-----------------------------------------------------------------CAAGAG---GCGGGTCAACTGCAACAGCA------------ACCA----------------------CGGC--AAA------AGC---A--------------------------------ACAA----------CAACAATTGCA------------AA---------------------------------------------------------------------AGGAGCAGAG----------TCAGCTGC--------------------------------AACAACA------------------------------------GCAG-------------GATCA------AGCCC------AG---C------------AACAACAACAA----------------AC---AGGACAGC---------------------------------AACAG---------CA-GCAAACGCAGAAACAGC
droEle1 scf7180000491107:1161236-1161393 + ACG-A-CC-----------------ACT-GA-GGCTCCAACGACAACGA---------------------------------------CCACTGAGGCTC---CC---------------------------------A----------------------CGAC--AAC------------A--------------------------------ACGAC-----AA--CG---------------------TGTGC---------------------------------------------------------------------CCCAACA----------ACAACC--ACGACAACGACCAC----------------T-----------------GAGGCTCCC------------------ACGAC-------------------------AACGACCACTGA---------------GGCTC----------------------CAAC---GACAAC---------------------------------GACCA---------CT-GAGGCTCCCACGACAAC
droRho1 scf7180000762853:122359-122530 - GAGCT-ACAGTTCCTGGACATGTTGCA-----TCAGCAGCAGGCGC-------------------AACAT------------------CAGCAACA---GGCGCA---------------------------------A----------------------CAACA--GCTGCTAATGCAGCA--------------------------------ACAA-------------C----------------AAC--------------------------G---------------------------------------ACAGCAGCAGCAGCA----------ACAACAAC--------------------------------AACAACA------------------------------------A-------------------------------------CAACAAC------------AACAACAACAA----------------CA---ACAACAAC---------------------------------AACAA---------CA-ACAACAACAACAACAGC
droBia1 scf7180000299102:2016521-2016714 - TCC-G-CCAGCTT-TGGCCATTGTCAAGGAA-GAATCAAGTAATAATAG---------------------------------------TTGTAATA---TGTA--------------------------------CCCA----------------------CAACACAAC------------A--------------------------------ACAA-------------C----------------AACACCAC------------------------------------------------------------------ATCATCATCA----------ACAACTAC--------------------------------AACAACAAC---------------------------------------CAAACAGACAACCAGCGAAAGCA---------------------------------TCAA-------------------CAACAACAACAACAACACTGAATGCGTTGGCTCGCCGGGCA--------------------A-CCACAC---ACAATCAC
droTak1 scf7180000414050:334603-334772 - ACC-A-CA---------------------AA-GAGGCTAGCAACAACGA---------------------------------------CCGAAAGA---ACAA--------------------------------C-------------------------TACCACAAC------------A--------------------------------ACTACAACGA--AA-----------------AG---GACAAC------------------------------------------------------------------GACGCCAACA----------ACTACAAC--------------------------------AACAACACCCAAACCA------ACCACAACAA----------------------------CACCGAAACCG------ACCACAA---C------------AACAA----------------------GAAA---GGCAAC---------------------------------AACCA---------CA-AAGAGCACAACGACAAC
droEug1 scf7180000407160:965-1158 + TCC-G-CCGGCTT-TGGCAATTGTTAAGGAA-GAATCAAGTAATAATAG---------------------------------------TTGTAATA---TGTA--------------------------------CCCA----------------------CAACACAAC------------A--------------------------------ACAA-------------C----------------AACACAAC------------------------------------------------------------------ATCATCATCA----------ACAACATC--------------------------------AACAACA------------------------------ACAACCACCACCAAACAGACAACCAGCGAAAGCA------AC----------------------------------------------------------AACAATACCGAGGGCGTTGGCTCACCCGGCA--------------------A-TCACACACAGTCACACC
dm3 chrX:1450239-1450406 - ACC-A-AGGACAAC---------------------TGTAGTGACAACAA---------------------CGACT------------------CAAAAAC---GC---------------------------------------------------------AGTACGAC------------A--------------------------------ACT----------------------------CACAACACCTCACCAGATACAAAAACAACAATA---------------------------------------AGAT---CT------------------------ACA---------------------------------------------ACGCTT---------------------T----------------CTCCGAAAACG------ACGACAAC---------------ACCTTCCACGA-------CAA------CA---CCTTCCAC---------------------------------GACAA---------CA-CCTTCCACGACAACACC
droSim2 3r:22558145-22558307 + AGG-G-CTT-----------------------------GGAGGCGTCCATTGGTGTGCCACCCAGCACAGCCACT------------------CCTAAAC---CC---------------------------------A----------------------AGGC--GGC------------T--------------------------------CCC----------------------------AGCACCACCAC---------------------------------------------------------------------TCCAAAA----------CCCACAAC--------------------------------GACAACT---------------------ACTACGCCGAAACCCACTAC-------------------------------------CA---------------CAACGA-------------------CAACTACTACAAC---------------------------------CACGC---------CA-AAACCCACTACCACAAC
droSec2 scaffold_13:1870570-1870734 + CGA-G-G---------------------------GGTTGGAGGCGTCCATTGGTGTGCCACCCAGCACAGCCACT------------------CCTAAAC---CT---------------------------------A----------------------AGGC--GGC------------T--------------------------------CCC----------------------------AGCACCACCAC---------------------------------------------------------------------TCCAAAA----------CCCACAAC--------------------------------GACAACT---------------------ACCACGCCGAAACCCACTAC-------------------------------------CA---------------CAACGA-------------------CAACTACAACAAC---------------------------------CACGC---------CA-AAACCCACTACCACAAC
droYak3 2L:17544967-17545104 - CAC-G-AAGGGTT--------------------CATCCAGCAGCAGCAG---------------------------------------TAGTTCTT----------------------------------------------------------------------CAAA------GCCTGCA--------------------------------GCAA--------GT-----------------AG---CACCAC------------------------------------------------------------------TCCTTTGATA----------ACCAAAAA--------------------------------AAAGCCA------------------------------------A-------------------------------------CCACGAC------------CAACGCTCCAA----------------CT---ACCACTAC---------------------------------TACTA---------CA-ACTACAACAACCGCAAC
droEre2 scaffold_4784:14010745-14010911 - CAG-CAACT---TC-CACAGCAGCTTG-----------CGCAACAACAT------------------------------------------------------CC---------TCAAC------------------------------------------------AAC------------------------------------------------------------------------------------------------------------------TCCCACAGCAACTGCCACAGCAACTTTCTCAACCACAT---CC------------------------ACAACAACTTCCGC----------------A-----------------GCAACATCA------------------ACAAC-------------------------AGCA----------------------------------ATCGCCAAGAATGC--CAAC---GAC---------------------------------------TCCA-ACAGGACGGCAGACACCACGTACACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGC-T-ATAGTCTCTGGGCATGATCACGAAGGGCATTTAGCGGCATCAAGTGGTAAAGCTCCTTGCGAAACAACTCCAAAGCCCCCAT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAAG-------------------------------------------------------------------------------------------------------CTAA---CAACAACACCCCCCTGTG---------------------A------------------AA---------AAACA------CCCATCTC-------------AC---------------CACCACAAGCAGAGAC------AA---C------------ACCCTGCACGA----------------CT---ACAACTTC---------------------------------TACAA---------CT-CCTTGCACAACCACATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................C-------------AC---------------CACCACAAGCAGAGA....................................................................................................................................1813.003000000000000000200010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................AA---CAACAACACCCCCCTGT........................................................................................................................................................................................................................................................1913.003000000000000000002010000000000000000000000000000000000000000000
...........CTCTGGGCATGATCACGAAGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000020
................................................................GCGAAACAACTCCAAAGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.................................CATTTAGCGGCATCAAGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
..................................................................................CCCCAT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAA........................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
................GGCATGATCACGAAGGGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................AT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAAG-------------------------------------------------------------------------------------------------------CTAA---CAACAAC..................................................................................................................................................................................................................................................................2711.001000000000000000100000000000000000000000000000000000000000000000
.....................................TAGCGGCATCAAGTGGTAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................G---------------------A------------------AA---------AAACA------CCCATCTC-------------AC---------------CACCAC.............................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTC---------------------------------TACAA---------CT-CCTTGCACAACC.....2511.001000000000000000001000000000000000000000000000000000000000000000
...........................................................TCCTTGCGAAACAACTCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------TACAA---------CT-CCTTGCACAACCACAT.2411.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................AACACCCCCCTGTG---------------------A------------------AA---------AAACA------CCCATC...................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................CAACTCCAAAGCCCCCAT-----------------------------------------------------------------------------------------------------------------GTGATA...............................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTC---------------------------------TACAA---------CT-CCTTGCAC.........2111.001000000000000000010000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AAACA------CCCATCTC-------------AC---------------CACCACAAGCAGA......................................................................................................................................2811.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................AACTCCAAAGCCCCCAT-----------------------------------------------------------------------------------------------------------------GT...................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
............................................ATCAAGTGGTAAAGCTCCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
............................................ATCAAGTGGTAAAGCTCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................AAAGCCCCCAT-----------------------------------------------------------------------------------------------------------------GTGATAAGCC...........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
.................GCATGATCACGAAGGGCATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................CCAAAGCCCCCAT-----------------------------------------------------------------------------------------------------------------GTGATAAGC............................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---C------------ACCCTGCACGA----------------CT---ACAA.......................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
......................................................................................AT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAAG-------------------------------------------------------------------------------------------------------CTA.............................................................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC------AA---C------------ACCCTGCACGA----------------CT---...........................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................CCCAT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAAG-------------------------------------------------------------------------------------------------------CT..............................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................CATTTAGCGGCATCAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................ATCAAGTGGTAAAGCTCCTTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---------CT-CCTTGCACAACCACATC2311.001000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACGA----------------CT---ACAACTTC---------------------------------TACA..............................2211.001000000000000000010000000000000000000000000000000000000000000000
.................................................................................CCCCCAT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAAG-------------------------------------------------------------------------------------------------------................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.............................................TCAAGTGGTAAAGCTCCTTGCGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCAGAGAC------AA---C------------ACCCTGCACG.................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
...................................................GGTAAAGCTCCTTGCGAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCTC-------------AC---------------CACCACAAGCAGA......................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC------AA---C------------ACCCTGCACGA----------------CT---AC.........................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....T-ATAGTCTCTGGGCATGATCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................AA---CAACAACACCCCCCTGTG---------------------A------------------...............................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---ACAACTTC---------------------------------TACAA---------CT-CCTTGCAC.........2411.001000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CA------CCCATCTC-------------AC---------------CACCAC.............................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACGA----------------CT---ACAACTTC---------------------------------TAC...............................2111.001000000000000000001000000000000000000000000000000000000000000000
..........................CGAAGGGCATTTAGCGGCATCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
......ATAGTCTCTGGGCATGATCACGAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................CCCCCAT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAAG-------------------------------------------------------------------------------------------------------CT..............................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...............................................AAGTGGTAAAGCTCCTTGCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
................GGCATGATCACGAAGGGCATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................AT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAAG-------------------------------------------------------------------------------------------------------CT..............................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
..C-T-ATAGTCTCTGGGCATGATCACGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
......................................................AAAGCTCCTTGCGAAACAACTCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTC---------------------------------TACAA---------CT-CCTTGCA..........2011.001000000000000000000010000000000000000000000000000000000000000000
............................................................CCTTGCGAAACAACTCCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGA----------------CT---ACAACTTC---------------------------------TACAA---------CT-CCTT.............2711.001000000000000000000010000000000000000000000000000000000000000000
......................................................................................AT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAAG-------------------------------------------------------------------------------------------------------CTAA---.........................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.........GTCTCTGGGCATGATCACGAAGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---------CT-CCTTGCACAACCACAT.2111.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................AT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAAG-------------------------------------------------------------------------------------------------------CTAA---C........................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.GC-T-ATAGTCTCTGGGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000010000000000000000000000000000000000000000000
...................ATGATCACGAAGGGCATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
......................................AGCGGCATCAAGTGGTAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
...........CTCTGGGCATGATCACGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..................................ATTTAGCGGCATCAAGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.........GTCTCTGGGCATGATCACGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...........CTCTGGGCATGATCACGAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
....................................................GTAAAGCTCCTTGCGAAACAACTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAC------AA---C------------ACCCTGCACG.................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
......................................................AAAGCTCCTTGCGAAACAACTCCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
......ATAGTCTCTGGGCATGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAC------AA---C------------ACCCTGCACGA----------------CT---ACAACT.....................................................................2811.001100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CCAAAG-------------------------------------------------------------------------------------------------------CTAA---CAACAACACCCCCCTGT........................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CCAAAG-------------------------------------------------------------------------------------------------------CTAA---CAACAACACCCCCCTGTG---------------------A------------------...............................................................................................................................................................................................................2911.001000000000000000001000000000000000000000000000000000000000000000
...................ATGATCACGAAGGGCATTTAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
...........................................CATCAAGTGGTAAAGCTCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
......................................................AAAGCTCCTTGCGAAACAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
...................................................................................CCCAT-----------------------------------------------------------------------------------------------------------------GTGATAAGCCAAAG-------------------------------------------------------------------------------------------------------CTAA---CA.......................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................GGCATGATCACGAAGGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---ACAACTTC---------------------------------TACAA---------CT-CCTTGCACA........2511.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
TTC-G-ATAGTCACTGGAGATGCTCACGACGATCATCTGGCGGCCCCAGGTGGTAAAGCTCCTTGCGAAACAACTCCGAAGCCACCGT-----------------------------------------------------------------------------------------------------------------GCACTAAGACAGC---CC----------------------------------------------------------CTACAGCTCCCCCACCCTGCACGAAAACAACTACCCC----------------------------------------------------------------------------------------------------------------------AAGCGCAGAATC---------------------AC---C------------AAGTGA----------------------------AACAACTACACCTTG------------------------TGAGA---------CA-ACTAGACGGACGACAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................ATCTGGCGGCCCCAGGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.......................................................................................................................................................................................................................................................................................................GCACGAAAACAACTACCCC----------------------------------------------------------------------------------------------------------------------AAGCGCA.......................................................................................................................................................2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGA---------CA-ACTAGACGGACGACA..2111.001000001
.................................................................................................................................................................................................................................................................................................................AACTACCCC----------------------------------------------------------------------------------------------------------------------AAGCGCAGAAT...................................................................................................................................................2011.001100000
.......................................................................AACTCCGAAGCCACCGT-----------------------------------------------------------------------------------------------------------------GCACT................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...........CACTGGAGATGCTCACGACGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................................................................................................................................................................................................................................................AACAACTACCCC----------------------------------------------------------------------------------------------------------------------AAGCGCA.......................................................................................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------CA-ACTAGACGGACGACA..1911.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATC---------------------AC---C------------AAGTGA----------------------------AACAACT..................................................................2211.001100000
................................................................................................................................................................................................................................................................................................................CAACTACCCC----------------------------------------------------------------------------------------------------------------------AAGCGCAGA.....................................................................................................................................................1911.001100000
................................................................................GCCACCGT-----------------------------------------------------------------------------------------------------------------GCACTAAGACAGC---CC----------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................2311.001100000
..C-G-ATAGTCACTGGAGATGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....G-ATAGTCACTGGAGATGCTCACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.............................................................................................................................................................................................................................................................................................CCCCCACCCTGCACGAAA...............................................................................................................................................................................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAGAATC---------------------AC---C------------AAGTGA----------------------------.........................................................................1911.001100000
..C-G-ATAGTCACTGGAGATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................................................................CTACAGCTCCCCCACCCTGCA....................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGA----------------------------AACAACTACACCTTG------------------------TGAGA---------....................2611.001100000
...................................................GGTAAAGCTCCTTGCGAAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................................................................................CACCGT-----------------------------------------------------------------------------------------------------------------GCACTAAGACAGC---CC----------------------------------------------------------C........................................................................................................................................................................................................................................................................................................................2211.001100000
.........................................................................................................................................................................................................................................................................................AGCTCCCCCACCCTGCACGAAAACA............................................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................................................................................................AGCTCCCCCACCCTGCAC...................................................................................................................................................................................................................................................................................................1811.001100000
..................................................................GAAACAACTCCGAAGCCACCGT-----------------------------------------------------------------------------------------------------------------G....................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................................................................................................................................................................................CTCCCCCACCCTGCACGA.................................................................................................................................................................................................................................................................................................1811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTG------------------------TGAGA---------CA-ACTAGACGGA.......2511.001000001
..C-G-ATAGTCACTGGAGATGCTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGA----------------------------AACAACTACACCTTG------------------------TGAGA---------....................2411.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACCTTG------------------------TGAGA---------CA-ACT..............2011.001100000
.........................................................................CTCCGAAGCCACCGT-----------------------------------------------------------------------------------------------------------------GCACTAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGA----------------------------AACAACTACACCTT...........................................................1811.001100000
.....................................................................................CGT-----------------------------------------------------------------------------------------------------------------GCACTAAGACAGC---CC----------------------------------------------------------C........................................................................................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................AACTACCCC----------------------------------------------------------------------------------------------------------------------AAGCGCAGAATC---------------------AC---C------------AAGT.......................................................................................................2811.001100000
droGri2
TGC-C-ATCGTGTCTGGCCACGATCACGAAACACATCATTCGGCGTTGGGTGGTCAAGCTCCATGCGGAACCACTGTGAAGCCACCGT-----------------------------------------------------------------------------------------------------------------GCGATAACCCAAAG-------------------------------------------------------------------------------------------------------CCAATTTCAACAACAAC----------CCCATG--------------------------------TGAAACA----------------------------------------------------------------CAGAC------GC---C------------CTCCACTACGA----------------CA---ACAACTCC---------------------------------AACCA---------CA-ACAACTAAAGTCACAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGC-T-GCTGCTTC-TGCAACTGATTGT-----------GAGACAA---------------------------------------------------------CC---------ACAGCATGTGCCACAGCTGACACCACGACAACCACCTGCAAACCAAATGAAGCAGA------------A--------------------------------CCAA-------------C----------------A-----------------------ACAACA---------------------------------------ACAT---GC------------------------ACAACACCTA---------------------------------------------------------CGACAACCACTTG-------------------------------------CA---------------GCACGGAA-TCCACAACAACCACCTGCAA---G-----------------------------------------CCAA-ATGAAACA-CAACCCACAACAACAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................AATGAAGCAGA------------A--------------------------------CCAA-------------C----------------A-----------------------AC...........................................................................................................................................................................................................................................................................................................................2011.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACCTGCAA---G-----------------------------------------CCAA-ATGAA.....................2111.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACTTG-------------------------------------CA---------------GCACGGA..................................................................................................18100.20200020
........................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------CGACAACCACTTG-------------------------------------CA---------------GCAC.....................................................................................................20100.10100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCACTTG-------------------------------------CA---------------GCACGGA..................................................................................................20100.10100010
................................................................................................................................................................................................................................................................................................................................................................CAACACCTA---------------------------------------------------------CGACAACCACTTG-------------------------------------CA---------------GCAC.....................................................................................................28100.10100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-ATGAAACA-CAACCCACA........19150.07100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAACA-CAACCCACAAC......19150.07100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ATGAAACA-CAACCCACAAC......20150.07100010
dp5
ACG-A-TG---------------ACGAAGTG-GCACCGAGCAGCAGCTC---------------------------------------GA------------------------------------------------G----------------------TGGTGCAGC------------A--------------------------------GCAG-------------C----------------AGC-----------------------------------------------CAC--CAATAAGGTGAACGGCAG---CGACGACAGCTCG------------------------CGGGTGAAGATCGATTTGCCG----------------ACATTT---------------------G----------------AGCCA------GAGACAACGACTCC---------------GACGCCGA-------------------CGACGACGACAAC---------------------------------TAAAG---------GT-GATAGCTTACCCACTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......G---------------ACGAAGTG-GCACCGAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGACTCC---------------GACGCCGA-------------------CGAC............................................................................2311.0010100000000
droPer2
AGC-G-ACACCAGC---------------------------GGCAGCGG---------------------------------------CAGCGA---CAC---CT---------------------------------G----------------------CGGC--AGC------------A--------------------------------GCACC-----AG--CGGCCGCACCAATTAAT---GCCGCATCAACAACAACAAAAACAGAAGTA---------------------------------------GC-----------------------------------------------------------------------------------CGCCC------------------ACAAC-------------------------AGCC----------------------------------ATAGCCTGTAAC---------ACAAATAC---------------------------------CACCCAGAAAGCACCC-CATCAAGCTGCAGCATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................TCAACAACAACAAAAACAGAAGTA---------------------------------------G...............................................................................................................................................................................................................................................................................2513.003030000
...............................................................................................................................................................................................................................................................TCAACAACAACAAAAACAGAAGTA---------------------------------------................................................................................................................................................................................................................................................................................2412.002020000
...............................................................................................................................................................................................................................................................TCAACAACAACAAAAACAGAAGTA---------------------------------------GC-----------------------------------------------------------------------------------...........................................................................................................................................................................................2611.001010000
...............................................................................................................................................................................................................................................................TCAACAACAACAAAAACAGAAGTA---------------------------------------GC-----------------------------------------------------------------------------------A..........................................................................................................................................................................................2740.251010000
droAna3
GAC-G-ACAGCCTC-CACAACTACTAAAGAA-G----------------------------------------------------------------TAA---CCAC---------A------TCCACAGCTCTTCCCA----------------------CAAC--AAC------------C--------------------------------TCAGC-----AA--CT---------------------TCTAC---------TGAAGAAGTAACA---------------------------------------ACAT---CC------------------------ACAGCT---------------------------------------------------------------CTTCCCACAGCTATATCC-------------------AC------AA---C------------AACTGAAGACG----------------CC---ACAACATC---------------------------------CACAG---------CT-GTTGCCACAACCATGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................CCA----------------------CAAC--AAC------------C--------------------------------TCAGC-----AA--C........................................................................................................................................................................................................................................................................................................................................................................1920.501010000
..............................................................................................................................ACAGCTCTTCCCA----------------------CAAC--AAC------------C--------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................2130.331010000
droBip1
TGG-C-AGCGGCGC-AGCCAGAGGCAAAAAA----------------------------------------------------------AG------TAG---TCCG---------A------GATACGGC----TACG----------------------CCATGCAAG------------GACTCTACCCCGACCCCCCACCATGCTCCAAGA-----------------------------------------------------------------------------------------------------TCACAA---CGACGACACCACCCTGTG---------------------A------------------TAAGGTC------------------------------------AC-------------------------------------TACGACAACAACAACAACACC-------------------------------TTGTGC---------------------------------CCCTA---------CA-ACGACTTCTACCACAACSizeHit CountTotal NormTotal
No Reads
droKik1
CGC-C-GCCAGCTTTGGCCATTGTCAAGGAA-GAATCAAGTAATAATAG---------------------------------------TTGTAATA---TGTA--------------------------------CCCA----------------------CAACACAAC------------A--------------------------------ACA--------------------------------ACACAAC------------------------------------------------------------------ATCATCATCA----------ACAAATAC--------------------------------AACAACAAC---------------------------------------CAAACAGACAACAAGCGAAAGCC------AC----------------------------------------------------------AACAACACAGAGGGCGTTGGCTCGCCGGGAAACAACAACAA---------CAACAGCACACAATCACACCSizeHit CountTotal NormTotal
No Reads
droFic1
ATTCA-GCAGCCTC-AGTCGATTCCAGTG-----------------------------------------------------------------CAAGAG---GCGGGTCAACTGCAACAGCA------------ACCA----------------------CGGC--AAA------AGC---A--------------------------------ACAA----------CAACAATTGCA------------AA---------------------------------------------------------------------AGGAGCAGAG----------TCAGCTGC--------------------------------AACAACA------------------------------------GCAG-------------GATCA------AGCCC------AG---C------------AACAACAACAA----------------AC---AGGACAGC---------------------------------AACAG---------CA-GCAAACGCAGAAACAGCSizeHit CountTotal NormTotal
No Reads
droEle1
ACG-A-CC-----------------ACT-GA-GGCTCCAACGACAACGA---------------------------------------CCACTGAGGCTC---CC---------------------------------A----------------------CGAC--AAC------------A--------------------------------ACGAC-----AA--CG---------------------TGTGC---------------------------------------------------------------------CCCAACA----------ACAACC--ACGACAACGACCAC----------------T-----------------GAGGCTCCC------------------ACGAC-------------------------AACGACCACTGA---------------GGCTC----------------------CAAC---GACAAC---------------------------------GACCA---------CT-GAGGCTCCCACGACAACSizeHit CountTotal NormTotal
No Reads
droRho1
GAGCT-ACAGTTCCTGGACATGTTGCA-----TCAGCAGCAGGCGC-------------------AACAT------------------CAGCAACA---GGCGCA---------------------------------A----------------------CAACA--GCTGCTAATGCAGCA--------------------------------ACAA-------------C----------------AAC--------------------------G---------------------------------------ACAGCAGCAGCAGCA----------ACAACAAC--------------------------------AACAACA------------------------------------A-------------------------------------CAACAAC------------AACAACAACAA----------------CA---ACAACAAC---------------------------------AACAA---------CA-ACAACAACAACAACAGCSizeHit CountTotal NormTotal
No Reads
droBia1
TCC-G-CCAGCTT-TGGCCATTGTCAAGGAA-GAATCAAGTAATAATAG---------------------------------------TTGTAATA---TGTA--------------------------------CCCA----------------------CAACACAAC------------A--------------------------------ACAA-------------C----------------AACACCAC------------------------------------------------------------------ATCATCATCA----------ACAACTAC--------------------------------AACAACAAC---------------------------------------CAAACAGACAACCAGCGAAAGCA---------------------------------TCAA-------------------CAACAACAACAACAACACTGAATGCGTTGGCTCGCCGGGCA--------------------A-CCACAC---ACAATCACSizeHit CountTotal NormTotal
No Reads
droTak1
ACC-A-CA---------------------AA-GAGGCTAGCAACAACGA---------------------------------------CCGAAAGA---ACAA--------------------------------C-------------------------TACCACAAC------------A--------------------------------ACTACAACGA--AA-----------------AG---GACAAC------------------------------------------------------------------GACGCCAACA----------ACTACAAC--------------------------------AACAACACCCAAACCA------ACCACAACAA----------------------------CACCGAAACCG------ACCACAA---C------------AACAA----------------------GAAA---GGCAAC---------------------------------AACCA---------CA-AAGAGCACAACGACAACSizeHit CountTotal NormTotal
No Reads
droEug1
TCC-G-CCGGCTT-TGGCAATTGTTAAGGAA-GAATCAAGTAATAATAG---------------------------------------TTGTAATA---TGTA--------------------------------CCCA----------------------CAACACAAC------------A--------------------------------ACAA-------------C----------------AACACAAC------------------------------------------------------------------ATCATCATCA----------ACAACATC--------------------------------AACAACA------------------------------ACAACCACCACCAAACAGACAACCAGCGAAAGCA------AC----------------------------------------------------------AACAATACCGAGGGCGTTGGCTCACCCGGCA--------------------A-TCACACACAGTCACACCSizeHit CountTotal NormTotal
No Reads
dm3
ACC-A-AGGACAAC---------------------TGTAGTGACAACAA---------------------CGACT------------------CAAAAAC---GC---------------------------------------------------------AGTACGAC------------A--------------------------------ACT----------------------------CACAACACCTCACCAGATACAAAAACAACAATA---------------------------------------AGAT---CT------------------------ACA---------------------------------------------ACGCTT---------------------T----------------CTCCGAAAACG------ACGACAAC---------------ACCTTCCACGA-------CAA------CA---CCTTCCAC---------------------------------GACAA---------CA-CCTTCCACGACAACACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...................................................................................................................................................................................................................................................................................AATA---------------------------------------AGAT---CT------------------------ACA---------------------------------------------ACGCTT---------------------T----------------CTCCGAA............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................AA---------------------CGACT------------------CAAAAAC---GC---------------------------------------------------------AGTACGAC------------A--------------------------------AC.....................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................................................T------------------------ACA---------------------------------------------ACGCTT---------------------T----------------CTCCGAAAACG------ACG...............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CAACACCTCACCAGATAC....................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
AGG-G-CTT-----------------------------GGAGGCGTCCATTGGTGTGCCACCCAGCACAGCCACT------------------CCTAAAC---CC---------------------------------A----------------------AGGC--GGC------------T--------------------------------CCC----------------------------AGCACCACCAC---------------------------------------------------------------------TCCAAAA----------CCCACAAC--------------------------------GACAACT---------------------ACTACGCCGAAACCCACTAC-------------------------------------CA---------------CAACGA-------------------CAACTACTACAAC---------------------------------CACGC---------CA-AAACCCACTACCACAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................CAACT---------------------ACTACGCCGAAACCCACTAC-------------------------------------C.........................................................................................................................2611.00100000000100000000
.......TT-----------------------------GGAGGCGTCCATTGGTGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTACTACAAC---------------------------------CACGC---------CA-AAACCCACT........2911.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCACTAC-------------------------------------CA---------------CAACGA-------------------................................................................................1820.50100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCCACTAC-------------------------------------CA---------------CAACGA-------------------CA..............................................................................2120.50100000000000001000
droSec2
CGA-G-G---------------------------GGTTGGAGGCGTCCATTGGTGTGCCACCCAGCACAGCCACT------------------CCTAAAC---CT---------------------------------A----------------------AGGC--GGC------------T--------------------------------CCC----------------------------AGCACCACCAC---------------------------------------------------------------------TCCAAAA----------CCCACAAC--------------------------------GACAACT---------------------ACCACGCCGAAACCCACTAC-------------------------------------CA---------------CAACGA-------------------CAACTACAACAAC---------------------------------CACGC---------CA-AAACCCACTACCACAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................GTTGGAGGCGTCCATTGGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...................................GTTGGAGGCGTCCATTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.GA-G-G---------------------------GGTTGGAGGCGTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...................................GTTGGAGGCGTCCATTGGTGTGCCACCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010
.....................................TGGAGGCGTCCATTGGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
...............................................................................................TAAAC---CT---------------------------------A----------------------AGGC--GGC------------T--------------------------------CCC----------------------------AGCA....................................................................................................................................................................................................................................................................................................................................................2311.0010010
.......................................................................CACT------------------CCTAAAC---CT---------------------------------A----------------------AGGC--GGC------------........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
............................................................................................................................................................................................................................................................................................................................................................AAC--------------------------------GACAACT---------------------ACCACGCCGA.........................................................................................................................................................................2011.0010001
.......................................................................................................CT---------------------------------A----------------------AGGC--GGC------------T--------------------------------CCC----------------------------AGCACCA.................................................................................................................................................................................................................................................................................................................................................2111.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCACTAC-------------------------------------CA---------------CAACGA-------------------CAA.............................................................................2020.5011000
droYak3
CAC-G-AAGGGTT--------------------CATCCAGCAGCAGCAG---------------------------------------TAGTTCTT----------------------------------------------------------------------CAAA------GCCTGCA--------------------------------GCAA--------GT-----------------AG---CACCAC------------------------------------------------------------------TCCTTTGATA----------ACCAAAAA--------------------------------AAAGCCA------------------------------------A-------------------------------------CCACGAC------------CAACGCTCCAA----------------CT---ACCACTAC---------------------------------TACTA---------CA-ACTACAACAACCGCAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CAG-CAACT---TC-CACAGCAGCTTG-----------CGCAACAACAT------------------------------------------------------CC---------TCAAC------------------------------------------------AAC------------------------------------------------------------------------------------------------------------------TCCCACAGCAACTGCCACAGCAACTTTCTCAACCACAT---CC------------------------ACAACAACTTCCGC----------------A-----------------GCAACATCA------------------ACAAC-------------------------AGCA----------------------------------ATCGCCAAGAATGC--CAAC---GAC---------------------------------------TCCA-ACAGGACGGCAGACACCACGTACACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/19/2015 at 12:58 PM