dvi_4544

CDS [Dvir\GJ11081-cds]; exon [dvir_GLEANR_10962:3]; exon [dvir_GLEANR_10962:2]; CDS [Dvir\GJ11081-cds]; intron [Dvir\GJ11081-in]

##################################################--------------------------------------------------------------------------------------################################################## CCTGGTACATCCGCAACCAGGACTTAGCAAGAGACCTAAAGGTTTCCTTGGTGGGTGACCTCTTACGACAGCAGTCCACTAGCTACATGGCCCGTCTTTCTGTCCACCCCAATATATTAGCTAGAAGGCTTTGCAGAAGAAGGCGACGGAGACTTCGCAGGATCCATCCCATCGATCTCCCAAACC ************************************************................................((.((.((((..(((..(((...............)))..))).)))).)).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060688 160_ovaries_total	SRR060665 9_females_carcasses_total	SRR060666 160_males_carcasses_total	SRR060686 Argx9_0-2h_embryos_total	SRR060670 9_testes_total	SRR060684 140x9_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total
...........................................................................................................................GAAGGGTTTGAAGAAGAAGG...........................................	20	2	3	0.33	1	0	1	0	0	0	0	0
.............................................................................ACTAGCTACATGGCCCGTCTTTC......................................................................................	23	0	4	0.25	1	1	0	0	0	0	0	0
...........................................................................................................................GAAGGGTTTGAAGAAGAAGGT..........................................	21	3	5	0.20	1	0	0	1	0	0	0	0
..........................................................CCTCTTACGACAGCAGTCCA............................................................................................................	20	0	5	0.20	1	1	0	0	0	0	0	0
.................................AGCTAAAGGTTACCGTGGTG.....................................................................................................................................	20	3	6	0.17	1	0	0	0	1	0	0	0
...............................................................................................................................GCTTTGCAGACTAAGGCG.........................................	18	2	7	0.14	1	0	0	0	0	1	0	0
.......................................................TCACCTCTTACGACAGAAC................................................................................................................	19	3	13	0.08	1	0	0	0	0	0	1	0
........................................................................................GTCCCGTCTTTCTCTCCA................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	1

GGACCATGTAGGCGTTGGTCCTGAATCGTTCTCTGGATTTCCAAAGGAACCACCCACTGGAGAATGCTGTCGTCAGGTGATCGATGTACCGGGCAGAAAGACAGGTGGGGTTATATAATCGATCTTCCGAAACGTCTTCTTCCGCTGCCTCTGAAGCGTCCTAGGTAGGGTAGCTAGAGGGTTTGG ************************************************................................((.((.((((..(((..(((...............)))..))).)))).)).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	SRR060678 9x140_testes_total	SRR060666 160_males_carcasses_total	SRR060674 9x140_ovaries_total	SRR060680 9xArg_testes_total	SRR060670 9_testes_total	SRR060677 Argx9_ovaries_total	SRR060679 140x9_testes_total	SRR060662 9x160_0-2h_embryos_total	SRR060663 160_0-2h_embryos_total	SRR060689 160x9_testes_total	V053 head	SRR060681 Argx9_testes_total	SRR060684 140x9_0-2h_embryos_total
..................................................................CTGTCGTTATGTGCTCGATGT...................................................................................................	21	3	5	1.40	7	0	3	0	0	2	1	0	1	0	0	0	0	0	0
...................CCTGAATCGTTCTCTGGATTT..................................................................................................................................................	21	0	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................GTTGTACAGGGCAAAAAGACA...................................................................................	21	3	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................ACATCTTCTTCCGCTACCTC...................................	20	2	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................TGTCGTTATGTGCTCGATGT...................................................................................................	20	3	20	0.45	9	0	1	0	0	2	2	0	1	0	0	2	0	1	0
......................................................................CGTCAGGTGATCGATGTACCGGGCAG..........................................................................................	26	0	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................TTATCGATCTTCCGAACCAT...................................................	20	3	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................ACCGGGCAGGAAGGCAGGTC...............................................................................	20	3	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GAAAGACTGGTGGCGTTA.........................................................................	18	2	9	0.11	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................TTGGTGGGGTAGCTAGTGGGT....	21	3	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................TGGAGAACGTTGTAGTCAG..............................................................................................................	19	3	19	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................ACGCGTCGTAGGTATGGTAG.............	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12855:9287310-9287495 +	dvi_4544	CC-TGGTACATCCGCAACCAGGACTTAGCAAGAGACCTAAAGGTTTCCTTGGTGGGTGACCTCTTACGACAGCAGTCCACTAGCTACATGGCCCGTCTTTCTGTCCACCCCAATATATTAGCTAGAAGGCT-------------------------TTG---CAGAAGAA------------------GGCGACGGAGACTTCGCAGGATCCATCCCATCGATCTCCCAAA----------CC
droMoj3	scaffold_6482:1406961-1407154 -		TC-TGGTACATGCGTACCTGGGACATTGAAAAAGATGTCAGGGTCCCCAAAGTAGGAGACGTAATGCAAAAGGTAACTGCTAGTTACCTTGCAAGACTTGAAGGCCACCCAAACCCTTTGGCGAGAAGACT-------------------------TAACAAAGCAGCCA------------------GAAAAAGAAGACTCAAGAAGTGCCATCCATCCATCCTACAAAA-----ATGTATC
droGri2	scaffold_15116:226831-226858 +		CC-CCATACGTGAGTAACAGGACGCTGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004943:6577971-6578145 -		CT-TGGTATATACGAAACAAGGATATTGAAAGGGACCTGGGCGTCCCTAAGGTGGGTGATGGTATGAAGCAA------------TATGCAGACCGCCTCGGTGGTCACCCAAATAGTCTAGCCAGACGTCT-------------------------CACTGACAGACCAA------------------GGAAAAGAAGACTGAAGCGATACCACCCAAGGAATCTCCCTAA------------
dp5	XR_group6:6632372-6632555 +		CC-TGGTACATGCGAAACAGCGACATTGAAAGGGACCTAAAGGCTCCCAAAGTGGGCGATGTTAAACAACTACATGCAGCGAGATACTTGCAACGCCTTGGTGGTCACCCTAATGCACTAGCCAAACGTCT-------------------------AATTACCCCGCCAA------------------AGAAACGAAGACTCAAAAGGTGTCATCCACTGGATCTCCC---------------
droPer2	scaffold_28:55361-55549 -		CCATGGTACATACGAAACAGCGACATCGAGAGGGACCTAAAGGTTCCCAAAGTGGGCGATGTTATACAACTACATGCAGCGAGGTACTTGCAACGACTTGGTGGTCACCCCAATGTACTAGCCAGATGTCT-------------------------AATTAACCCGCCAA------------------GGAAAAGAAGACTCAAAAGGTGTCATCCACTGGATCTCCCTA-----------CT
droAna3	scaffold_13079:629420-629626 -		CA-TGGTACATGCGCACCTCGAACTAAGAGAAGGACCTGATGGTATCCAAAGTAGGCGACGTACTAAACGAGCAGACTAAAAAGTACAAAGAAAAGCTTCAAAATCACTCAAACGTTCTAGTCAGGCATCT-------------------------CCTAAGAGACCGCAGAATTGCAGGTGTCAGGGTACGGAGAAGGCTAAAACGAGTACACTCTAAAGATCTCCCAAG----------CC
droBip1	scf7180000394959:5343-5542 -		CG-TGGTTTATGCGAACCAGAGACATCGAACGAGATCTCAACGTGCCTAAAATCGGAGACAAGCTGCAGGAACTTTCTCGGAAATACATGGAACGTTTAAATGAGCACCCCAACAGCCTAGCTTGGTACCGCTGCTAT---------------TA-GGAGCGCTGATCCA----------------AGTCAAGAGAAGACTAAAAAGACACCACCCTTAAGACCTACCAAA----------CC
droKik1	scf7180000301591:33017-33205 +		CC-TGGTACGTCAGAAACAAGGACATCGAGAGGAACCTAAAGGTCCCGATAGTCAGAGACATTCTCCAAGATTTGGCAATCGGCTATGCGCAACGCCTCGAAAACCACCCTAATGCTTTGCCCAGACACCT-------------------------TACAAGAAGGGACA------------------GAACAAGAAAATTAAAAAGATGCCATCCAATCGACCTTCCTAA----------AA
droFic1	scf7180000454169:18094-18284 -		CT-TGGTACATCCGAAATAGGGACAACGAGAGGAACCTGAAGGTCCCCAAGGTCGGAGATGTTCTACAAAACTTGGCAACCAGCTATGTGCAACGCCTTGGAAACCACCCTAACGCATTGGCCAGACAGTA-------------------------GAACAGCGCAATCG----------------ATAGAGAAGACGCCTTAAAAGATGCCACCCAGCCGATTTACCTTC----------AA
droEle1	scf7180000486800:6343-6527 -		CC-TGGTTAATGAGAACTAGTGATTTAGAAAGAGATCTCCAAATCGCAAAGATAGGCGATGTATGTCGTACGCACGCCGAAAACTACCTCAGACGTCTTGGCTCTCATCCTAACACCCTGGCGAAGAGGCT-------------------------AATATGGAGACCTA------------------AGAAAAGAAGACTTAAAAGTTACCACTCACATGACCTTCCA--------------
droRho1	scf7180000758904:436-634 -		CA-TGGTACATCCGAAATAGGAACATCGAGAGAGACCTGAAGGTCCCCAAGGTCGGAGACGTTTTACAAAACCTGGCAACCGGCTATGTGCAACGCCTTGGAAACCACCCTAACGCATTGGCCAGACAGTT-------------------------AGCAGCGCAACCGA------------------CGAGAAGACGCCTAAAAAGATGCCTCCCAGCCGATTTACCCTCAACGGCCATAAC
droBia1	scf7180000302421:884561-884690 -		AG-TGGTTCGTTAGCGGCCAAACGCTTCACAATGACCTAAACCTGAGTCTTGTTGAAGACCAAATATCGTTCTTTTCAAGCAGGTACAACGACCGTCTAACTGCCCACCGTAATCGTCTAGCCCGGAGATT----------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415875:111094-111275 -		CG-TGGTACGTGAGAAATGAGGTCCTAGCCAGTGACCTGCACATTCCTTCAGTGAGAGAGCAAATCAACATGCACTCAAGCCGCTACAACGACCGACTACTAGCCCACTCCAATCAATTAGCTGCATCCTT-------------------------GGCAAACCCAACCA------------------CAAGAAGAAGGCTGAAGCGTCGACACCCTGGTGATCTC-----------------
droEug1	scf7180000409447:1626-1809 +		CA-TGGTACATGAGAACCAGAGACATAGAAAGAGATCTACAAGTCCCAAAGATAGGCGATGTTTGTCGAACGCATGCTGAAAGCTACTTCAGACGCCTTGGCAATCATCCTAACTCCCTGGCGAAGAGGCT-------------------------AATTTGGAGACCAA------------------GAAGGAGAAGACTCAAAAGATTCCACCCACACGATCTCCC---------------
dm3	chr3RHet:608383-608569 +		CC-TGGTACGTGACGAACCAGGTAATCGAAGGAGATCTGAAAGTTACCTC--TTGGGGATCAGATTAATTTTCACAGCAGCCGTTATGCCGACAGGCTTATGGTCCACCCGAACCAACTAGCAAATATCCT-------------------------AGCTAATCCCATCT------------------CCCTCCGAAGGCTGAAGATGGTACACCCCACCGATCTCCCTAC----------CC
droSim2	node_96334:279-458 -		CT-TGGTACATGAGAACCAGAGATATAGAAAGAGATCTTAATATTCCAAAGATAGGCGATGTATTGAGGACTCATGCGGAAAGTTATATGCGGCGACTAGGTTTCCACCCCAACACCCTGGCGAGAAGGCC-------------------------A--------CCCGA------------------AAAAAAGAAGGCTAAAAAGATTCCACCCACATGATCTCCAAT-----------CG
droSec2	scaffold_1937:492-680 -		CC-TGGTACGTGACGAACATAGTCATCGAAAGAGATCTGAAAGTTACCCTTCTTGGGGATCAGATTAATTTCCACAGCAGCCGTTATGCCGACAGGCTTATAGCCCACCCGAACCAACTAGCAACTATCCT-------------------------AGCTGATCACATCT------------------CCCTCCGAAGACTGAAGAGGGTACACCCCAGCGATCTCCTTAC----------CC
droYak3	v2_chrX_random_001:135186-135373 +		CC-TGGTACATGAGAACCAGAGATATCGAAAGGGATCTTAATATTCCAAAGATAGGCGATGTACTGAGGACCCATGCGGAAAGATACATGCGGCGACTCCGTTCCCACCCCAACACCCTGGCGAGAAGGCT-------------------------TATCCATCCCCTGT------------------GAAAAAGAAGGCTGAAAAGATTCCACCCACATGATCTCCCAT-----------CG
droEre2	scaffold_4929:25929597-25929804 -		CG-TGGTATATGAGGAACAGTGACATTGAACGTGATCTCAAGATTAC--------GAGACAAAATCCAAGAAGTGGCCAAAAAATACCAGGAGAGACTGGATTTACATACCAACATCCTAGGAAGGCGTCTAGGCAATGCGGCCCTACAAGTTGAAGA-------CCCCAG---------AACAAGAACGAGAAGAAGACTCCAATGTCACCATCCTCAAGACCTCCCAGA----------CC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CC-TGGTACATCCGCAACCAGGACTTAGCAAGAGACCTAAAGGTTTCCTTGGTGGGTGACCTCTTACGACAGCAGTCCACTAGCTACATGGCCCGTCTTTCTGTCCACCCCAATATATTAGCTAGAAGGCT-------------------------TTG---CAGAAGAA------------------GGCGACGGAGACTTCGCAGGATCCATCCCATCGATCTCCCAAA----------CC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................ACTAGCTACATGGCCCGTCTTTC..............................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................CCTCTTACGACAGCAGTCCA....................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TC-TGGTACATGCGTACCTGGGACATTGAAAAAGATGTCAGGGTCCCCAAAGTAGGAGACGTAATGCAAAAGGTAACTGCTAGTTACCTTGCAAGACTTGAAGGCCACCCAAACCCTTTGGCGAGAAGACT-------------------------TAACAAAGCAGCCA------------------GAAAAAGAAGACTCAAGAAGTGCCATCCATCCATCCTACAAAA-----ATGTATC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................AAGACTTGAAGGCCACCCAAACC................................................................................................................................	23	1	4.00	4	3	0	0	0	1	0
............................................................................................................................GAAGACT-------------------------TAACAAAGCAGCCA------------------GA.....................................................	23	3	3.00	9	8	0	0	0	1	0
............................................................................................................................GAAGACT-------------------------TAACAAAGCAGCCA------------------.......................................................	21	3	1.33	4	4	0	0	0	0	0
............................................................................................................................GAAGACT-------------------------TAACAAAGCAGCCA------------------GAA....................................................	24	3	1.33	4	3	0	0	0	1	0
..........................................................................................................................................................................................................AAGAAGTGCCATCCATCCATCCTACAAA.............	28	1	1.00	1	1	0	0	0	0	0
......TACATGCGTACCTGGGACATTGA......................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................TGCCATCCATCCATCCTACAAAA-----.......	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................AAGAAGTGCCATCCATCCATCCTACA...............	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................CAAGACTTGAAGGCCACCCAAA..................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................AGACTTGAAGGCCACCCAAACCCTT.............................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................AAGACTTGAAGGCCACCCAAACCCTTT............................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................AAGACTTGAAGGCCACCCAAACCC...............................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................AAGAAGTGCCATCCATCCATCCT..................	23	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................AAGAAGTGCCATCCATCCATCCTA.................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................AGAAGACTCAAGAAGTGCCATCCATCCAT.....................	29	1	1.00	1	0	0	0	0	0	1
...........................................................................................CAAGACTTGAAGGCCACCCAAACC................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............TACCTGGGACATTGAAAAAGATGTCA...........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................AAGTGCCATCCATCCATCC...................	19	1	1.00	1	0	0	0	0	1	0
............................................................................................................................GAAGACT-------------------------TAACAAAGCAGCCA------------------G......................................................	22	3	0.67	2	2	0	0	0	0	0
............................................................................................................................GAAGACT-------------------------TAACAAAGCAGCCA------------------GAT....................................................	24	3	0.67	2	2	0	0	0	0	0
..........................................................ACGTAATGCAAAAGGTAACTGCTA.................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
..........................................................ACGTAATGCAAAAGGTAACTGCT..................................................................................................................................................................	23	2	0.50	1	0	0	0	0	1	0
..........................................................ACGTAATGCAAAAGGTAACTGCTAG................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
.............................................................................................................................AAGACT-------------------------TAACAAAGCAGCCA------------------.......................................................	20	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................TTGGCGAGAAGACT-------------------------TAACAAAGCA.............................................................................	24	3	0.33	1	1	0	0	0	0	0
............................................................................................................................GAAGACT-------------------------TAACAAAGCAGCCA------------------GAAAA..................................................	26	3	0.33	1	1	0	0	0	0	0
............................................................................................................................GAAGACT-------------------------TAACAAAGCAGCCA------------------GAAA...................................................	25	3	0.33	1	1	0	0	0	0	0
............................................................................................................................GAAGACT-------------------------TAACAAAGCAGCCA------------------GAATTG.................................................	27	3	0.33	1	1	0	0	0	0	0
............................................................................................................................GAAGACT-------------------------TAACAAAGCAGCCA------------------GAATTT.................................................	27	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................................................GAAGACTCAAGAAGTGCCATCC...........................	22	4	0.25	1	1	0	0	0	0	0
.................................................................................................................CCCTTTGGCGAGAAGACT-------------------------TAAC...................................................................................	22	5	0.20	1	0	0	0	0	1	0

droGri2

CC-CCATACGTGAGTAACAGGACGCTGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CT-TGGTATATACGAAACAAGGATATTGAAAGGGACCTGGGCGTCCCTAAGGTGGGTGATGGTATGAAGCAA------------TATGCAGACCGCCTCGGTGGTCACCCAAATAGTCTAGCCAGACGTCT-------------------------CACTGACAGACCAA------------------GGAAAAGAAGACTGAAGCGATACCACCCAAGGAATCTCCCTAA------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................GAAGACTGAAGCGATACCACCCA..........................	23	9	1.67	15	2	11	1	1	0
..................................................................................................................................................................................................GAAGACTGAAGCGATACCACCC...........................	22	9	1.22	11	0	8	0	3	0
...........................................................................................................................AGACGTCT-------------------------CACTGACAGACCAA------------------GG.....................................................	24	1	1.00	1	0	1	0	0	0
.....................................TGGGCGTCCCTAAGGTGGGTGATGG.....................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
..........TACGAAACAAGGATATTGAAAGGGACC..............................................................................................................................................................................................................	27	9	0.89	8	0	8	0	0	0
.................................................................................................................................................................................................AGAAGACTGAAGCGATACCACC............................	22	9	0.78	7	0	7	0	0	0
..........TACGAAACAAGGATATTGAAAGGGA................................................................................................................................................................................................................	25	9	0.67	6	0	2	0	4	0
..................................................................................................................................................................................................GAAGACTGAAGCGATACCACCCAA.........................	24	8	0.50	4	0	4	0	0	0
........................................................................................................TCACCCAAATAGTCTAGCCAGACGTCT-------------------------.......................................................................................	27	2	0.50	1	0	1	0	0	0
.................................................................................................................................................................................................AGAAGACTGAAGCGATACCACCC...........................	23	9	0.44	4	0	4	0	0	0
..........TACGAAACAAGGATATTGAAAGGG.................................................................................................................................................................................................................	24	9	0.44	4	0	3	0	1	0
...................................................................................................................................................................................................AAGACTGAAGCGATACCACCCA..........................	22	9	0.44	4	0	4	0	0	0
..................................................................................................................................................................................................GAAGACTGAAGCGATACCACC............................	21	9	0.33	3	0	2	0	1	0
.......................TATTGAAAGGGACCTGGGCGTCC.....................................................................................................................................................................................................	23	11	0.27	3	0	1	0	2	0
...................AGGATATTGAAAGGGACCTGGGCG........................................................................................................................................................................................................	24	11	0.27	3	0	3	0	0	0
..........TACGAAACAAGGATATTGAAAGGGAC...............................................................................................................................................................................................................	26	9	0.22	2	0	1	0	1	0
.................................................................................................................................................................................................AGAAGACTGAAGCGATACCACCCA..........................	24	9	0.22	2	0	2	0	0	0
...............AACAAGGATATTGAAAGGGACCTG............................................................................................................................................................................................................	24	10	0.20	2	0	2	0	0	0
...........ACGAAACAAGGATATTGAAAGGG.................................................................................................................................................................................................................	23	10	0.20	2	0	2	0	0	0
...................AGGATATTGAAAGGGACCTGGGCGT.......................................................................................................................................................................................................	25	11	0.18	2	0	2	0	0	0
..................AAGGATATTGAAAGGGACCTGGGC.........................................................................................................................................................................................................	24	11	0.18	2	0	1	0	1	0
.....................GATATTGAAAGGGACCTGGGCGT.......................................................................................................................................................................................................	23	11	0.18	2	0	2	0	0	0
.......................TATTGAAAGGGACCTGGGCGTC......................................................................................................................................................................................................	22	11	0.18	2	0	0	0	2	0
..................AAGGATATTGAAAGGGACCTGGG..........................................................................................................................................................................................................	23	11	0.18	2	0	2	0	0	0
.......ATATACGAAACAAGGATATTGAA.....................................................................................................................................................................................................................	23	8	0.13	1	0	1	0	0	0
..........TACGAAACAAGGATATTGAAAGGGACCT.............................................................................................................................................................................................................	28	9	0.11	1	0	1	0	0	0
..........................TGAAAGGGACCTGGGCGTCCCTAAGG...............................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0
...............AACAAGGATATTGAAAGGGACCTGG...........................................................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0
.................................................................................................................................................................................................AGAAGACTGAAGCGATACCA..............................	20	10	0.10	1	0	1	0	0	0
................ACAAGGATATTGAAAGGGAC...............................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0
......................................GGGCGTCCCTAAGGTGGGTGATG......................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0
.....................................TGGGCGTCCCTAAGGTGGGTGATG......................................................................................................................................................................................	24	10	0.10	1	0	1	0	0	0
.................................................................................................................................................................................................AGAAGACTGAAGCGATACCAC.............................	21	10	0.10	1	0	1	0	0	0
...................AGGATATTGAAAGGGACCTGGGCGTC......................................................................................................................................................................................................	26	11	0.09	1	0	1	0	0	0
....................GGATATTGAAAGGGACCTGGGCC........................................................................................................................................................................................................	23	11	0.09	1	0	1	0	0	0
....................GGATATTGAAAGGGACCTGGGCGTC......................................................................................................................................................................................................	25	11	0.09	1	0	0	1	0	0
..................AAGGATATTGAAAGGGACCTGG...........................................................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0
...................AGGATATTGAAAGGGACCTGGGC.........................................................................................................................................................................................................	23	11	0.09	1	0	1	0	0	0
.....................GATATTGAAAGGGACCTGGGCG........................................................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0

dp5

CC-TGGTACATGCGAAACAGCGACATTGAAAGGGACCTAAAGGCTCCCAAAGTGGGCGATGTTAAACAACTACATGCAGCGAGATACTTGCAACGCCTTGGTGGTCACCCTAATGCACTAGCCAAACGTCT-------------------------AATTACCCCGCCAA------------------AGAAACGAAGACTCAAAAGGTGTCATCCACTGGATCTCCC---------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................GAAGACTCAAAAGGTGTCATCCACT........................	25	7	6.57	46	0	42	4	0	0	0	0	0	0	0
..................................................................................................................................................................................................GAAGACTCAAAAGGTGTCATCCAC.........................	24	7	5.57	39	0	35	2	0	0	0	0	2	0	0
..................................................................................................................................................................................................GAAGACTCAAAAGGTGTCATCC...........................	22	7	3.29	23	0	22	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................GAAGACTCAAAAGGTGTCATCCACTGG......................	27	6	2.67	16	0	15	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................GAAGACTCAAAAGGTGTCATCCACTG.......................	26	6	2.00	12	0	12	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GAAGACTCAAAAGGTGTCATCCA..........................	23	7	1.14	8	0	6	0	0	0	0	0	2	0	0
..................................................................................................................................................................................................GAAGACTCAAAAGGTGTCATCCACTGGA.....................	28	6	1.00	6	0	6	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GAAGACTCAAAAGGTGTCATC............................	21	7	0.86	6	0	4	2	0	0	0	0	0	0	0
..................................................................................................................................................................................................GAAGACTCAAAAGGTGTCATCCACC........................	25	7	0.57	4	0	0	4	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGACTCAAAAGGTGTCATCCACT........................	24	7	0.29	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGACTCAAAAGGTGTCATCC...........................	21	7	0.29	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGACTCAAAAGGTGTCATCCACTGG......................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGACTCAAAAGGTGTCATCCACTG.......................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGACTCAAAAGGTGTCATCCACTGGA.....................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGTCATCCACTGGATCTC.................	18	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AAAGGTGTCATCCACTGGATC...................	21	7	0.14	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAAAGGTGTCATCCACTGGATT...................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGACTCAAAAGGTGTCATC............................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGACTCAAAAGGTGTCATCCAC.........................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AGACTCAAAAGGTGTCATCC...........................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CTCAAAAGGTGTCATCCACT........................	20	7	0.14	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAAAGGTGTCATCCACTGGATCT..................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0

droPer2

CCATGGTACATACGAAACAGCGACATCGAGAGGGACCTAAAGGTTCCCAAAGTGGGCGATGTTATACAACTACATGCAGCGAGGTACTTGCAACGACTTGGTGGTCACCCCAATGTACTAGCCAGATGTCT-------------------------AATTAACCCGCCAA------------------GGAAAAGAAGACTCAAAAGGTGTCATCCACTGGATCTCCCTA-----------CT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................AACGACTTGGTGGTCACCCCAAT.................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0
...........................................................................................AACGACTTGGTGGTCACCCCAATG................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
...TGGTACATACGAAACAGCGACAT.........................................................................................................................................................................................................................	23	3	1.33	4	0	4	0	0	0	0
...........................................................................................AACGACTTGGTGGTCACCCCAATA................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................CAATGTACTAGCCAGATGTCT-------------------------AAT....................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................CCAA------------------GGAAAAGAAGACTCAAAAGG...................................	24	17	1.00	17	5	12	0	0	0	0
...........................................................TGTTATACAACTACATGCAGCGAGG...............................................................................................................................................................	25	5	1.00	5	0	5	0	0	0	0
..........................................................ATGTTATACAACTACATGCAGCGAGG...............................................................................................................................................................	26	5	0.80	4	0	4	0	0	0	0
...TGGTACATACGAAACAGCGACATC........................................................................................................................................................................................................................	24	3	0.67	2	0	2	0	0	0	0
......................................................................................................................................................................CCAA------------------GGAAAAGAAGACTCAAAAGGTG.................................	26	15	0.60	9	0	7	0	0	0	2
...TGGTACATACGAAACAGCGACA..........................................................................................................................................................................................................................	22	4	0.50	2	0	2	0	0	0	0
...............AACAGCGACATCGAGAGGGAC...............................................................................................................................................................................................................	21	7	0.43	3	0	0	0	0	0	3
............CGAAACAGCGACATCGAGAGG..................................................................................................................................................................................................................	21	5	0.40	2	0	0	0	1	0	1
....GGTACATACGAAACAGCGACAT.........................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
.......................................................................ACATGCAGCGAGGTACTTGCAACGACT.................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
...TGGTACATACGAAACAGCGACATCGA......................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0
...TGGTACATACGAAACAGCGACATCG.......................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
........................................................................CATGCAGCGAGGTACTTGCAACGA...................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
......TACATACGAAACAGCGACATCGAGA....................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
......................................................................................................................................................................CCAA------------------GGAAAAGAAGACTCAAAAG....................................	23	17	0.29	5	1	4	0	0	0	0
...........................................................TGTTATACAACTACATGCAGCGA.................................................................................................................................................................	23	8	0.25	2	0	2	0	0	0	0
....................................................................................TACTTGCAACGACTTGGTGGTCACCC.....................................................................................................................................	26	12	0.25	3	0	3	0	0	0	0
..............AAACAGCGACATCGAGAGGGA................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	1
...........................................................TGTTATACAACTACATGCAGCGAG................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0
..............AAACAGCGACATCGAGAGG..................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	1
...............................................................ATACAACTACATGCAGCGAGGTAC............................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0
......................................................................................................................................................................CCAA------------------GGAAAAGAAGACTCAAAAA....................................	23	17	0.18	3	3	0	0	0	0	0
............................................TCCCAAAGTGGGCGATGTTATACAACT............................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0
..................................................................................GGTACTTGCAACGACTTGGTGG...........................................................................................................................................	22	13	0.15	2	0	2	0	0	0	0
..................AGCGACATCGAGAGGGACC..............................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	1	0
...........................................TTCCCAAAGTGGGCGATGTTATA.................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0
........................................................CGATGTTATACAACTACATGCAGCG..................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0
....................CGACATCGAGAGGGACCTAAAGG........................................................................................................................................................................................................	23	8	0.13	1	0	1	0	0	0	0
..........................................................ATGTTATACAACTACATGCAGCGA.................................................................................................................................................................	24	8	0.13	1	0	1	0	0	0	0
.......................................................................................................................................................................CAA------------------GGAAAAGAAGACTCAAAAGG...................................	23	17	0.12	2	0	2	0	0	0	0
...............................................CAAAGTGGGCGATGTTATA.................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	1
................................................AAAGTGGGCGATGTTATACAA..............................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	1
.......................................................................................TTGCAACGACTTGGTGGTCACC......................................................................................................................................	22	12	0.08	1	0	1	0	0	0	0
....................................................................................TACTTGCAACGACTTGGTGGTCAC.......................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0
....................................................................................TACTTGCAACGACTTGGTGGTCACC......................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0
.....................................................................................ACTTGCAACGACTTGGTGGTCACC......................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0
......................................................................................CTTGCAACGACTTGGTGGTCACCC.....................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0
.....................GACATCGAGAGGGACCTAAAGG........................................................................................................................................................................................................	22	13	0.08	1	0	0	1	0	0	0
.................................................................................AGGTACTTGCAACGACTTGG..............................................................................................................................................	20	13	0.08	1	0	1	0	0	0	0
....................................................................................TACTTGCAACGACTTGGTGGTC.........................................................................................................................................	22	13	0.08	1	0	1	0	0	0	0
..................................................................................GGTACTTGCAACGACTTGGTTT...........................................................................................................................................	22	13	0.08	1	0	1	0	0	0	0
.......................CATCGAGAGGGACCTAAAGG........................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	1	0
.......................................AAGGTTCCCAAAGTGGGCGATG......................................................................................................................................................................................	22	14	0.07	1	0	1	0	0	0	0
...................................CCTAAAGGTTCCCAAAGTGGGCGATG......................................................................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0
........................ATCGAGAGGGACCTAAAGGTT......................................................................................................................................................................................................	21	14	0.07	1	0	0	0	0	0	1
.......................................................................................................................................................................CAA------------------GGAAAAGAAGACTCAAAAGGTG.................................	25	15	0.07	1	0	1	0	0	0	0
......................................................................................................................................................................CCAA------------------GGAAAAGAAGACTCAAAAGGT..................................	25	15	0.07	1	0	1	0	0	0	0
.................................GACCTAAAGGTTCCCAAAGTGGGCGT........................................................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0
....................................................................................................................................................................................................AGACTCAAAAGGTGTCATCCACTGGATC...................	28	15	0.07	1	0	1	0	0	0	0
.....................................................................................................................................................................................................GACTCAAAAGGTGTCATCCACTGG......................	24	15	0.07	1	0	1	0	0	0	0
....................................................................................................................................................................CGCCAA------------------GGAAAAGAAGACTC.........................................	20	16	0.06	1	0	0	0	0	0	1
....................................................................................................................................................................CGCCAA------------------GGAAAAGAAGACTCA........................................	21	16	0.06	1	0	0	0	0	0	1
...................................................................................................................................................................CCGCCAA------------------GGAAAAGAAGACTC.........................................	21	16	0.06	1	0	0	0	0	0	1
.................................................................................................................................................................................................................GTCATCCACTGGATCTCCCT..............	20	17	0.06	1	0	1	0	0	0	0
.......................................................................................................................................................................CAA------------------GGAAAAGAAGACTCAAAAG....................................	22	17	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................TCATCCACTGGATCTCCCTA-----------..	20	17	0.06	1	0	1	0	0	0	0
................................................................................................................................................................................................................TGTCATCCACTGGATCTCCC...............	20	18	0.06	1	0	1	0	0	0	0
..............................................................................................................................................................................................AAAAGAAGACTCAAAAGGTGT................................	21	18	0.06	1	0	0	0	0	0	1

droAna3

CA-TGGTACATGCGCACCTCGAACTAAGAGAAGGACCTGATGGTATCCAAAGTAGGCGACGTACTAAACGAGCAGACTAAAAAGTACAAAGAAAAGCTTCAAAATCACTCAAACGTTCTAGTCAGGCATCT-------------------------CCTAAGAGACCGCAGAATTGCAGGTGTCAGGGTACGGAGAAGGCTAAAACGAGTACACTCTAAAGATCTCCCAAG----------CC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............GCACCTCGAACTAAGAGAAGGA................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................TAAGAGAAGGACCTGATGGTATCCAAA................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................TTCTAGTCAGGCATCT-------------------------CCTAAGAGACC............................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................................TGATGGTATCCAAAGTAGGCGACGTAC...................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................TACGGAGAAGGCTAAAACGAGTACACTC...........................	28	1	1.00	1	1	0	0	0	0	0
........CATGCGCACCTCGAACTAAGAGAAGGACC..............................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................TCAGGGTACGGAGAAGGCTAAAACGAG..................................	27	2	0.50	1	1	0	0	0	0	0
...............................................................................................................AACGTTCTAGTCAGGCATCT-------------------------CCTAAGA................................................................................	27	3	0.33	1	1	0	0	0	0	0
........................................................................................................TCACTCAAACGTTCTAGTCAGGCATCT-------------------------CC.....................................................................................	29	4	0.25	1	1	0	0	0	0	0
.........................................................................................................CACTCAAACGTTCTAGTCAGGCATC.................................................................................................................	25	5	0.20	1	1	0	0	0	0	0
........................................................................................................TCACTCAAACGTTCTAGTCAGGCATC.................................................................................................................	26	5	0.20	1	1	0	0	0	0	0
.......................................................................................................ATCACTCAAACGTTCTAGTCAGGCATC.................................................................................................................	27	5	0.20	1	1	0	0	0	0	0

droBip1

CG-TGGTTTATGCGAACCAGAGACATCGAACGAGATCTCAACGTGCCTAAAATCGGAGACAAGCTGCAGGAACTTTCTCGGAAATACATGGAACGTTTAAATGAGCACCCCAACAGCCTAGCTTGGTACCGCTGCTAT---------------TA-GGAGCGCTGATCCA----------------AGTCAAGAGAAGACTAAAAAGACACCACCCTTAAGACCTACCAAA----------CC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CC-TGGTACGTCAGAAACAAGGACATCGAGAGGAACCTAAAGGTCCCGATAGTCAGAGACATTCTCCAAGATTTGGCAATCGGCTATGCGCAACGCCTCGAAAACCACCCTAATGCTTTGCCCAGACACCT-------------------------TACAAGAAGGGACA------------------GAACAAGAAAATTAAAAAGATGCCATCCAATCGACCTTCCTAA----------AA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CT-TGGTACATCCGAAATAGGGACAACGAGAGGAACCTGAAGGTCCCCAAGGTCGGAGATGTTCTACAAAACTTGGCAACCAGCTATGTGCAACGCCTTGGAAACCACCCTAACGCATTGGCCAGACAGTA-------------------------GAACAGCGCAATCG----------------ATAGAGAAGACGCCTTAAAAGATGCCACCCAGCCGATTTACCTTC----------AA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CC-TGGTTAATGAGAACTAGTGATTTAGAAAGAGATCTCCAAATCGCAAAGATAGGCGATGTATGTCGTACGCACGCCGAAAACTACCTCAGACGTCTTGGCTCTCATCCTAACACCCTGGCGAAGAGGCT-------------------------AATATGGAGACCTA------------------AGAAAAGAAGACTTAAAAGTTACCACTCACATGACCTTCCA--------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CA-TGGTACATCCGAAATAGGAACATCGAGAGAGACCTGAAGGTCCCCAAGGTCGGAGACGTTTTACAAAACCTGGCAACCGGCTATGTGCAACGCCTTGGAAACCACCCTAACGCATTGGCCAGACAGTT-------------------------AGCAGCGCAACCGA------------------CGAGAAGACGCCTAAAAAGATGCCTCCCAGCCGATTTACCCTCAACGGCCATAAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AG-TGGTTCGTTAGCGGCCAAACGCTTCACAATGACCTAAACCTGAGTCTTGTTGAAGACCAAATATCGTTCTTTTCAAGCAGGTACAACGACCGTCTAACTGCCCACCGTAATCGTCTAGCCCGGAGATT----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CG-TGGTACGTGAGAAATGAGGTCCTAGCCAGTGACCTGCACATTCCTTCAGTGAGAGAGCAAATCAACATGCACTCAAGCCGCTACAACGACCGACTACTAGCCCACTCCAATCAATTAGCTGCATCCTT-------------------------GGCAAACCCAACCA------------------CAAGAAGAAGGCTGAAGCGTCGACACCCTGGTGATCTC-----------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CA-TGGTACATGAGAACCAGAGACATAGAAAGAGATCTACAAGTCCCAAAGATAGGCGATGTTTGTCGAACGCATGCTGAAAGCTACTTCAGACGCCTTGGCAATCATCCTAACTCCCTGGCGAAGAGGCT-------------------------AATTTGGAGACCAA------------------GAAGGAGAAGACTCAAAAGATTCCACCCACACGATCTCCC---------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CC-TGGTACGTGACGAACCAGGTAATCGAAGGAGATCTGAAAGTTACCTC--TTGGGGATCAGATTAATTTTCACAGCAGCCGTTATGCCGACAGGCTTATGGTCCACCCGAACCAACTAGCAAATATCCT-------------------------AGCTAATCCCATCT------------------CCCTCCGAAGGCTGAAGATGGTACACCCCACCGATCTCCCTAC----------CC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......TACGTGACGAACCAGGTAATCGAAGGA..................................................................................................................................................................................................................	27	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	2	6	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GGTAATCGAAGGAGATCTGAAAGT.......................................................................................................................................................................................................	24	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AATTTTCACAGCAGCCGTTATGC..........................................................................................................................................................	23	20	10.60	212	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	4	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	2	0	0	0	0	64	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	2	0	7	0	9	1	6	4	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	2	0	1	0	0	0	12	1	16	0	0	0	0	0	0	23	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
..............GAACCAGGTAATCGAAGGA..................................................................................................................................................................................................................	19	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GAAGGAGATCTGAAAGTTACC...................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TAATCGAAGGAGATCTGAAAGTTACC...................................................................................................................................................................................................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGAAGATGGTACACCCCACCGATCT..................	25	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AATTTTCACAGCAGCCGTTATG...........................................................................................................................................................	22	20	8.45	169	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	1	2	1	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	1	0	0	0	0	47	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	2	8	2	0	4	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	6	0	7	0	0	0	0	0	0	4	9	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	6	8	6	0	0	0	0	0	0
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......................................................................................TGCCGACAGGCTTATGGTCCACCCGA...................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ACGTGACGAACCAGGTAATCG.......................................................................................................................................................................................................................	21	10	0.30	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................GATTAATTTTCACAGCAGCCGTT..............................................................................................................................................................	23	10	0.30	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CT-TGGTACATGAGAACCAGAGATATAGAAAGAGATCTTAATATTCCAAAGATAGGCGATGTATTGAGGACTCATGCGGAAAGTTATATGCGGCGACTAGGTTTCCACCCCAACACCCTGGCGAGAAGGCC-------------------------A--------CCCGA------------------AAAAAAGAAGGCTAAAAAGATTCCACCCACATGATCTCCAAT-----------CG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................TGTATTGAGGACTCATGCGGAAAGT...............................................................................................................................................................	25	2	8.50	17	0	0	0	0	0	0	2	1	2	0	12	0	0	0	0	0	0
....................................................TAGGCGATGTATTGAGGACTCATGCGGC...................................................................................................................................................................	28	2	3.50	7	0	0	0	0	0	0	0	5	0	2	0	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTAGG..............................................................................................................................................	26	12	2.50	30	0	0	0	0	0	0	15	9	0	0	0	0	4	2	0	0	0
..............................AGAGATCTTAATATTCCAAAGATAG............................................................................................................................................................................................	25	14	2.21	31	0	0	0	1	25	0	0	0	0	0	4	0	0	1	0	0	0
....GGTACATGAGAACCAGAGAT...........................................................................................................................................................................................................................	20	10	2.10	21	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0	0
...........................................................TGTATTGAGGACTCATGCGGAAAGTTA.............................................................................................................................................................	27	2	2.00	4	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0
..........................................................................TGCGGAAAGTTATATGCGGCGACTAGG..............................................................................................................................................	27	12	2.00	24	0	0	0	0	0	0	1	3	16	1	1	0	2	0	0	0	0
..............................AGAGATCTTAATATTCCAAAGATAGGC..........................................................................................................................................................................................	27	14	2.00	28	0	0	0	0	0	0	14	6	4	1	3	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTAG...............................................................................................................................................	25	12	1.92	23	0	0	0	0	0	0	0	1	0	0	2	0	13	7	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTA................................................................................................................................................	24	12	1.75	21	0	0	0	0	0	0	0	0	0	2	0	0	17	2	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCA..............................	18	16	1.63	26	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACT.................................................................................................................................................	23	13	1.62	21	0	0	0	0	0	0	9	9	0	0	1	0	2	0	0	0	0
..............................AGAGATCTTAATATTCCAAAGAT..............................................................................................................................................................................................	23	17	1.59	27	0	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCACC............................	20	14	1.57	22	0	0	0	0	21	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................TAGGTTTCCACCCCAACACCCTGGCGAGA.....................................................................................................................	29	2	1.50	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCACCCACA........................	24	14	1.14	16	0	0	0	1	0	0	6	0	0	2	6	0	1	0	0	0	0
..............................AGAGATCTTAATATTCCAAAGATAGGCGA........................................................................................................................................................................................	29	14	1.14	16	0	0	0	0	0	0	9	5	2	0	0	0	0	0	0	0	0
......................................................................CTCATGCGGAAAGTTATATGCGGC.....................................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................TAGGTTTCCACCCCAACACCCTGGCGAGAA....................................................................................................................	30	2	1.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.............................................................TATTGAGGACTCATGCGGAAAGTTA.............................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................TGTATTGAGGACTCATGCGGAAAGTT..............................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
................................................................TGAGGACTCATGCGGAAAGTTATA...........................................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
...............................................................TTGAGGACTCATGCGGAAA.................................................................................................................................................................	19	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TTGAGGACTCATGCGGAAAGTTATA...........................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
......TACATGAGAACCAGAGATATAGA......................................................................................................................................................................................................................	23	9	0.78	7	0	0	0	0	0	0	2	1	0	2	2	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTAGGT.............................................................................................................................................	27	12	0.75	9	0	0	0	0	0	0	3	2	0	0	0	0	1	3	0	0	0
..............................AGAGATCTTAATATTCCAAAGATA.............................................................................................................................................................................................	24	14	0.71	10	0	0	0	1	0	0	4	2	1	0	1	0	1	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCACCCACATGA.....................	27	13	0.69	9	0	0	0	0	0	0	4	0	1	1	2	0	1	0	0	0	0
..............AACCAGAGATATAGAA.....................................................................................................................................................................................................................	16	14	0.64	9	0	0	0	0	0	0	8	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCACCCAC.........................	23	14	0.57	8	0	0	0	1	0	0	1	1	0	3	2	0	0	0	0	0	0
..............................AGAGATCTTAATATTCCAAAGATAGG...........................................................................................................................................................................................	26	14	0.57	8	0	0	0	1	0	0	3	1	2	0	0	0	1	0	0	0	0
..............................AGAGATCTTAATATTCCAAAGA...............................................................................................................................................................................................	22	18	0.56	10	0	0	0	0	0	0	2	2	5	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCACCCACAT.......................	25	13	0.54	7	0	0	0	0	0	0	5	0	0	1	1	0	0	0	0	0	0
....................................................................................TATATGCGGCGACTAGGTTTCCACCCC....................................................................................................................................	27	4	0.50	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
.....................................................AGGCGATGTATTGAGGACTCATGCGGC...................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................GATGTATTGAGGACTCATGCGGAAAGT...............................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........TGAGAACCAGAGATATAGAAAGAGA................................................................................................................................................................................................................	25	10	0.50	5	0	0	0	0	0	0	0	0	3	1	1	0	0	0	0	0	0
...........................................................TGTATTGAGGACTCATGCGGAAAG................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................GTATTGAGGACTCATGCGGAAAGTTA.............................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................TTGAGGACTCATGCGGAAAGTTA.............................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................GGCGATGTATTGAGGACTCATGCGGC...................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................TGTATTGAGGACTCATGCGGAAAGTTATA...........................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................TAGGCGATGTATTGAGGACTCATGC......................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................TAGGTTTCCACCCCAACACCCTGGCGA.......................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................TTCCACCCCAACACCCTGGCGAGA.....................................................................................................................	24	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TGAGGACTCATGCGGAAAGTTATATGC........................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................TATTGAGGACTCATGCGGAAAGT...............................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................TTGAGGACTCATGCGGAAAGTTATATGC........................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................CACCCCAACACCCTGGCGAGAAGGCC-------------------------A--------CC............................................................................	29	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TTTCCACCCCAACACCCTGGCGAGAA....................................................................................................................	26	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................TATTGAGGACTCATGCG.....................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................CTCATGCGGAAAGTTATATGCGGCGA...................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGA...................................................................................................................................................	21	13	0.46	6	0	0	0	0	0	0	0	0	0	4	0	0	1	1	0	0	0
...TGGTACATGAGAACCAGAGATATAGAAA....................................................................................................................................................................................................................	28	5	0.40	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
...TGGTACATGAGAACCAGAGATATAGAA.....................................................................................................................................................................................................................	27	6	0.33	2	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTAT...............................................................................................................................................	25	12	0.33	4	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0
..........TGAGAACCAGAGATATAGAA.....................................................................................................................................................................................................................	20	12	0.33	4	0	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTAGA..............................................................................................................................................	26	12	0.33	4	0	0	0	0	0	0	0	3	0	0	0	0	0	1	0	0	0
......TACATGAGAACCAGAGATATAGAA.....................................................................................................................................................................................................................	24	9	0.33	3	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0
.T-TGGTACATGAGAACCAGAGATATAGA......................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AGGCTAAAAAGATTCCACCCACATGATC...................	28	13	0.31	4	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCACCCACATG......................	26	13	0.31	4	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGAC..................................................................................................................................................	22	13	0.31	4	0	0	0	0	0	0	1	1	0	0	0	0	1	1	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCACCCACATGATC...................	29	13	0.31	4	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0
.............GAACCAGAGATATAGAA.....................................................................................................................................................................................................................	17	13	0.31	4	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0
....................................................................................................................................................................................................AGGCTAAAAAGATTCCACCCACATGA.....................	26	13	0.31	4	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0
......TACATGAGAACCAGAGATATA........................................................................................................................................................................................................................	21	10	0.30	3	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCACCCA..........................	22	14	0.29	4	0	0	0	1	0	0	1	0	0	0	2	0	0	0	0	0	0
..........TGAGAACCAGAGATATAGAAA....................................................................................................................................................................................................................	21	11	0.27	3	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0
......TACATGAGAACCAGAGATATAGAAA....................................................................................................................................................................................................................	25	8	0.25	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................TGCGGAAAGTTATATGCGGCGACTA................................................................................................................................................	25	12	0.25	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
....................................................................................TATATGCGGCGACTAGGTTT...........................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................AGTTATATGCGGCGACTAGGTTTC..........................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................TGCGGCGACTAGGTTTCCACCCCAA..................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......TACATGAGAACCAGAGATATAG.......................................................................................................................................................................................................................	22	9	0.22	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
.........................TAGAAAGAGATCTTAATATTCCAAAGA...............................................................................................................................................................................................	27	16	0.19	3	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0
...TGGTACATGAGAACCAGAGATATAGAATT...................................................................................................................................................................................................................	29	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...TGGTACATGAGAACCAGAGATATAGA......................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTATT..............................................................................................................................................	26	12	0.17	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
...TGGTACATGAGAACCAGAGATATAG.......................................................................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCACCCACATGAT....................	28	13	0.15	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..........................................................................TGCGGAAAGTTATATGCGGCGA...................................................................................................................................................	22	13	0.15	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0
..............................................................................GAAAGTTATATGCGGCGACTA................................................................................................................................................	21	14	0.14	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................AGAGATCTTAATATTCCAAAGATAGT...........................................................................................................................................................................................	26	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
............................................................................CGGAAAGTTATATGCGGCGACTAGG..............................................................................................................................................	25	14	0.14	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...............................................................................AAAGTTATATGCGGCGACTAG...............................................................................................................................................	21	15	0.13	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
.........................................................................................................CACCCCAACACCCTGGCGAGAA....................................................................................................................	22	17	0.12	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
......TACATGAGAACCAGAGATATAGAAT....................................................................................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........TGAGAACCAGAGATATAGAAAGAGATC..............................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......TACATGAGAACCAGAGATATAGT......................................................................................................................................................................................................................	23	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......TACATGAGAACCAGAGATATAGATTT...................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AAAAAAGAAGGCTAAAAAGATTCCACC............................	27	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............ACCAGAGATATAGAAAGAGATCTT............................................................................................................................................................................................................	24	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................CGA------------------AAAAAAGAAGGCTAAAAAGATT.................................	25	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................AGAGATATAGAAAGAGATCTTAATAT.......................................................................................................................................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTATA..............................................................................................................................................	26	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........TGAGAACCAGAGATATAGAAAA...................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTAC...............................................................................................................................................	25	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTAGGA.............................................................................................................................................	27	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................TGCGGAAAGTTATATGCGGCGACTAGGT.............................................................................................................................................	28	12	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................CATGCGGAAAGTTATATGCGGCGAC..................................................................................................................................................	25	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........TGAGAACCAGAGATATAGAAT....................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTAGT..............................................................................................................................................	26	12	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTAA...............................................................................................................................................	25	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................TAAAAAGATTCCACCCACATGATCTCC................	27	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAAAGATTCCACCCACATGA.....................	22	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGACTTA...............................................................................................................................................	25	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................ATGCGGAAAGTTATATGCGGCGA...................................................................................................................................................	23	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......TACATGAGAACCAGAGATA..........................................................................................................................................................................................................................	19	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......TACATGAGAACCAGAGAT...........................................................................................................................................................................................................................	18	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................TGCGGAAAGTTATATGCGGCGAC..................................................................................................................................................	23	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGT...................................................................................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................AGAAGGCTAAAAAGATTCCACCCACA........................	26	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................AGGCTAAAAAGATTCCACCCACATGAT....................	27	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AGGCTAAAAAGATTCCACCCACATG......................	25	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................TGCGGAAAGTTATATGCGGCG....................................................................................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCACCCACATGC.....................	27	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......TACATGAGAACCAGAGATAT.........................................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................AAGAGATCTTAATATTCCAAAGATA.............................................................................................................................................................................................	25	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCCACCCAG.........................	23	14	0.07	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CGGAAAGTTATATGCGGCGACTAG...............................................................................................................................................	24	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGC.....................................................................................................................................................	19	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................TAAAAAGATTCCACCCA..........................	17	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................CAAAGATAGGCGATGTATTGAGGAC............................................................................................................................................................................	25	14	0.07	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................GCGGAAAGTTATATGCGGCGAT..................................................................................................................................................	22	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................AGAAGGCTAAAAAGATTCCACA............................	22	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................TATAGAAAGAGATCTTAATATTCCAA..................................................................................................................................................................................................	26	15	0.07	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................AAAGTTATATGCGGCGACTA................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................AGTTATATGCGGCGACTAG...............................................................................................................................................	19	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................TATAGAAAGAGATCTTAATATTCCAAAG................................................................................................................................................................................................	28	15	0.07	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TATAGAAAGAGATCTTAATATTCCAAAGA...............................................................................................................................................................................................	29	15	0.07	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................AGTTATATGCGGCGACTAGGTT............................................................................................................................................	22	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................TAGAAAGAGATCTTAATATTCCAAAGAT..............................................................................................................................................................................................	28	15	0.07	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTCC...............................	17	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................AGAAGGCTAAAAAGAT..................................	16	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................AAAGTTATATGCGGCGACT.................................................................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................TATGCGGCGACTAGG..............................................................................................................................................	15	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................AGATATAGAAAGAGATCTTAATATT......................................................................................................................................................................................................	25	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................TATGCGGCGACTAGGTT............................................................................................................................................	17	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................GATATAGAAAGAGATCTTAATAT.......................................................................................................................................................................................................	23	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................AGAGATATAGAAAGAG.................................................................................................................................................................................................................	16	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTAAAAAGATTC................................	16	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................AGGCTAAAAAGATTCC...............................	16	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................AAAGAGATCTTAATATTCCAAAGA...............................................................................................................................................................................................	24	17	0.06	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................AAGAGATCTTAATATTCCAAAGAT..............................................................................................................................................................................................	24	17	0.06	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGAGATCTTAATATTCCAAAGAGCT............................................................................................................................................................................................	25	18	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................TTCCAAAGATAGGCGATGTATTGAG...............................................................................................................................................................................	25	18	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................CAAAGATAGGCGATGTATTGAT...............................................................................................................................................................................	22	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................TAGGCGATGTATTGAGGA.............................................................................................................................................................................	18	18	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................AGAAAGAGATCTTAATA........................................................................................................................................................................................................	17	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................GAAAGAGATCTTAATAT.......................................................................................................................................................................................................	17	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................AACACCCTGGCGAGAA....................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AAGATTCCACCCACATGATCTC.................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................CTTAATATTCCAAAGAT..............................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................AGAGATCTTAATATTCC....................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................TAATATTCCAAAGATAGGCGA........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................AAGAGATCTTAATATTCC....................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................AAAGATAGGCGATGTAT...................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................GATCTTAATATTCCAAAGATAGGC..........................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CC-TGGTACGTGACGAACATAGTCATCGAAAGAGATCTGAAAGTTACCCTTCTTGGGGATCAGATTAATTTCCACAGCAGCCGTTATGCCGACAGGCTTATAGCCCACCCGAACCAACTAGCAACTATCCT-------------------------AGCTGATCACATCT------------------CCCTCCGAAGACTGAAGAGGGTACACCCCAGCGATCTCCTTAC----------CC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................ATCAGATTAATTTCCACAGCAGCCGT...............................................................................................................................................................	26	20	2.15	43	43	0	0	0
..........................................................ATCAGATTAATTTCCACAGCAGCCGTTA.............................................................................................................................................................	28	20	0.15	3	0	2	1	0
....................AGTCATCGAAAGAGATCTGAAAGT.......................................................................................................................................................................................................	24	20	0.10	2	0	0	2	0
..................................................................................................TATAGCCCACCCGAACCAACTAGCAAC......................................................................................................................	27	20	0.05	1	1	0	0	0
.............................................................................................................CGAACCAACTAGCAACTATCCT-------------------------AGC....................................................................................	25	20	0.05	1	1	0	0	0
....................................................................................TATGCCGACAGGCTTATAGCCCACC......................................................................................................................................	25	20	0.05	1	1	0	0	0
...................................................................................TTATGCCGACAGGCTTATAGCCCACC......................................................................................................................................	26	20	0.05	1	1	0	0	0
.......................CATCGAAAGAGATCTGAAAGTTACCCT.................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0
....................................................................................................TAGCCCACCCGAACCAACTAGCAACTA....................................................................................................................	27	20	0.05	1	0	0	0	1
.................................................................................................TTATAGCCCACCCGAACCAACTA...........................................................................................................................	23	20	0.05	1	1	0	0	0
................................................................TTAATTTCCACAGCAGCCGTTATG...........................................................................................................................................................	24	20	0.05	1	0	0	1	0
............................................................................................................................................................................................................GAGGGTACACCCCAGCGATCTCCT...............	24	20	0.05	1	1	0	0	0

droYak3

CC-TGGTACATGAGAACCAGAGATATCGAAAGGGATCTTAATATTCCAAAGATAGGCGATGTACTGAGGACCCATGCGGAAAGATACATGCGGCGACTCCGTTCCCACCCCAACACCCTGGCGAGAAGGCT-------------------------TATCCATCCCCTGT------------------GAAAAAGAAGGCTGAAAAGATTCCACCCACATGATCTCCCAT-----------CG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................TACATGCGGCGACTCCGTTCCCACCCC....................................................................................................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..........................................................................TGCGGAAAGATACATGCGGCGACTCCG..............................................................................................................................................	27	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................T------------------GAAAAAGAAGGCTGAAAAGATTCCACC............................	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..........................................................................TGCGGAAAGATACATGCGGCGAC..................................................................................................................................................	23	3	1.67	5	0	4	1	0	0	0	0	0	0	0	0
......................................................................................................TCCCACCCCAACACCCTGGCGAGAAGGCT-------------------------.......................................................................................	29	14	1.07	15	0	2	0	0	0	0	0	0	0	0	13
............................................................................................................................................................TATCCATCCCCTGT------------------GAAAAAGAAGGC...........................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................TATCCATCCCCTGT------------------GAAAAAGAAGGCT..........................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................ATCCATCCCCTGT------------------GAAAAAGAAGGC...........................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................GAAAGATACATGCGGCGACTCCGT.............................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................TGCGGAAAGATACATGCGGCGA...................................................................................................................................................	22	3	0.67	2	0	1	0	0	0	0	1	0	0	0	0
..........................................................................TGCGGAAAGATACATGCGGCGACT.................................................................................................................................................	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTGAAAAGATTCCACCCACA........................	24	13	0.54	7	0	7	0	0	0	0	0	0	0	0	0
................CCAGAGATATCGAAAGGGATCTTT...........................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...............ACCAGAGATATCGAAAGGGATCTTAA..........................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...............ACCAGAGATATCGAAAGGGATCTT............................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..........TGAGAACCAGAGATATCGAAAGGGA................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...TGGTACATGAGAACCAGAGATATCGAA.....................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTGAAAAGATTCCACCCACATG......................	26	13	0.38	5	0	3	2	0	0	0	0	0	0	0	0
..............................................................................GAAAGATACATGCGGCGACT.................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................CCCATGCGGAAAGATACATGCGGCGAC..................................................................................................................................................	27	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................TGCGGAAAGATACATGCGGCGACTC................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................TGCGGAAAGATACATGCGGC.....................................................................................................................................................	20	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................GCGGAAAGATACATGCGGCGAC..................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................TGCGGAAAGATACATGCGGCGT...................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTGAAAAGATTCCACCC...........................	21	13	0.31	4	0	3	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTGAAAAGATTCCACCCAC.........................	23	13	0.31	4	1	2	1	0	0	0	0	0	0	0	0
...................................................ATAGGCGATGTACTGAGGACC...........................................................................................................................................................................	21	13	0.31	4	0	3	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................AAGGCTGAAAAGATTCCACCCACATGA.....................	27	13	0.23	3	0	3	0	0	0	0	0	0	0	0	0
......................................................................................................TCCCACCCCAACACCCTGGCGAGAAG...................................................................................................................	26	14	0.21	3	0	3	0	0	0	0	0	0	0	0	0
.....................................................................................................TTCCCACCCCAACACCCTGGCGAGAAGGCT-------------------------.......................................................................................	30	14	0.21	3	0	0	0	0	0	0	0	0	0	0	3
............................................TCCAAAGATAGGCGATGTACTGAGGACC...........................................................................................................................................................................	28	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
...................................TCTTAATATTCCAAAGATAGGCGATG......................................................................................................................................................................................	26	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................AGAAGGCTGAAAAGATTCCACCC...........................	23	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
......................................................GGCGATGTACTGAGGACC...........................................................................................................................................................................	18	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................GAGAAGGCT-------------------------TATCCATCCCC............................................................................	20	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
...................................................ATAGGCGATGTACTGAGGACCC..........................................................................................................................................................................	22	13	0.15	2	2	0	0	0	0	0	0	0	0	0	0
......................................................................................................TCCCACCCCAACACCCTGGCGAGAAGGC.................................................................................................................	28	14	0.14	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................CACCCCAACACCCTGGCGAGAAGGCT-------------------------.......................................................................................	26	14	0.14	2	0	1	1	0	0	0	0	0	0	0	0
....GGTACATGAGAACCAGAGA............................................................................................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
...................................TCTTAATATTCCAAAGATAGGC..........................................................................................................................................................................................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..........................................ATTCCAAAGATAGGCGATGTACTGA................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.............................................CCAAAGATAGGCGATGTACTGAG...............................................................................................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............................................TCCAAAGATAGGCGATGTACTGAGG..............................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................TATTCCAAAGATAGGCGATGTACC..................................................................................................................................................................................	24	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
..........................................ATTCCAAAGATAGGCGATGTA....................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................GATTCCACCCACATGATCTCCCAT-----------CG	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................TGTACTGAGGACCCATGCGGAAAGATA.............................................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...................................TCTTAATATTCCAAAGATAGGCGA........................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..........................................ATTCCAAAGATAGGCGATGTACTGAAA..............................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................TATTCCAAAGATAGGCGATGTACTG.................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................TGTACTGAGGACCCATGCGGAAAGATAC............................................................................................................................................................	28	12	0.08	1	1	0	0	0	0	0	0	0	0	0	0
..................................ATCTTAATATTCCAAAGATAGGCGATG......................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..........................................ATTCCAAAGATAGGCGATGTACTG.................................................................................................................................................................................	24	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0
...........................................TTCCAAAGATAGGCGATGTA....................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0
..........................................ATTCCAAAGATAGGCGATGTACTGAGG..............................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AGGCTGAAAAGATTCCACCC...........................	20	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................ACTGAGGACCCATGCGGAAAGATA.............................................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGAAAAGATTCCACCCACATGATC...................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...............................................AAAGATAGGCGATGTACTGA................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................GATGTACTGAGGACCCATGCGGAAAGA...............................................................................................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..................................................GATAGGCGATGTACTGAGGACCCATG.......................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................GGCGAGAAGGCT-------------------------TATCCATCCCC............................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................................................AGATAGGCGATGTACTGAG...............................................................................................................................................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................AGGACCCATGCGGAAAGAT..............................................................................................................................................................	19	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................AGGCGATGTACTGAGGACCC..........................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............................................................GTACTGAGGACCCATGCGGAAAGAT..............................................................................................................................................................	25	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
......................................................GGCGATGTACTGAGGACCC..........................................................................................................................................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GGCTGAAAAGATTCCACCCACAT.......................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................GATGTACTGAGGACCCATGCG.....................................................................................................................................................................	21	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................GAAAAAGAAGGCTGAAAAGATTCCACC............................	27	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AAAAAGAAGGCTGAAAAGATTCCACC............................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................GATGTACTGAGGACCCATGCGGAA..................................................................................................................................................................	24	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................GGACCCATGCGGAAAGATACA...........................................................................................................................................................	21	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
......................................................GGCGATGTACTGAGGACCCATGC......................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGAAAAGATTCCACCCACATGAT....................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................................................AGATAGGCGATGTACTGAGGACCCATGC......................................................................................................................................................................	28	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................CACCCCAACACCCTGGCGAGAAGGCT-------------------------TA.....................................................................................	28	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...................................................ATAGGCGATGTACTGAGGACCCATGCG.....................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AGGCTGAAAAGATTCCACCCACATG......................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................GATGTACTGAGGACCCATGCGGAAA.................................................................................................................................................................	25	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
...................................................ATAGGCGATGTACTGAGGACCCATGCGG....................................................................................................................................................................	28	13	0.08	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................CTGAGGACCCATGCGGAAAGATACAT..........................................................................................................................................................	26	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................CTGAGGACCCATGCGGAAAGAT..............................................................................................................................................................	22	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................GAGGACCCATGCGGAAAGATACA...........................................................................................................................................................	23	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
......................................................GGCGATGTACTGAGGACCCATGCGGAAAG................................................................................................................................................................	29	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
....................................................TAGGCGATGTACTGAGGACCCATGC......................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................CCCTGGCGAGAAGGCT-------------------------TATCCATCCC.............................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGGCTGAAAAGATTCCACCCATT........................	24	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GAAGGCTGAAAAGATTCCACCC...........................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..................................................GATAGGCGATGTACTGAGGACCCATGC......................................................................................................................................................................	27	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
...................................................ATAGGCGATGTACTGAGGACCCATGCGGA...................................................................................................................................................................	29	13	0.08	1	1	0	0	0	0	0	0	0	0	0	0
..................................................GATAGGCGATGTACTGAGGACC...........................................................................................................................................................................	22	13	0.08	1	1	0	0	0	0	0	0	0	0	0	0
..............................................CAAAGATAGGCGATGTACTG.................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................TCCCACCCCAACACCCTGGCGAGAA....................................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................CACCCCAACACCCTGGCGAGAAGGC.................................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................CCCCAACACCCTGGCGAGAAG...................................................................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................TTCCCACCCCAACACCCTGGCGAGAAGG..................................................................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................TACTGAGGACCCATGCGGA...................................................................................................................................................................	19	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................TTCCCACCCCAACACCCTGGCGAGAAG...................................................................................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................TTCCCACCCCAACACCCTGGCG........................................................................................................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................CCCACCCCAACACCCTGGCGAGAAGGC.................................................................................................................	27	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................TTCCCACCCCAACACCCTGGCGAG......................................................................................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CG-TGGTATATGAGGAACAGTGACATTGAACGTGATCTCAAGATTAC--------GAGACAAAATCCAAGAAGTGGCCAAAAAATACCAGGAGAGACTGGATTTACATACCAACATCCTAGGAAGGCGTCTAGGCAATGCGGCCCTACAAGTTGAAGA-------CCCCAG---------AACAAGAACGAGAAGAAGACTCCAATGTCACCATCCTCAAGACCTCCCAGA----------CC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

-15.6	-15.5	-15.4	-15.3

dvi_4544

scaffold_12855:9287360-9287445 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads