ID:

dvi_4502

 Coordinate:

scaffold_12855:8547852-8548002 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.0 -24.8 -24.1

Flybase annnotation

exon [dvir_GLEANR_10058:1]; CDS [Dvir\GJ10109-cds]; intron [Dvir\GJ10109-in]

No Repeatable elements found

Sense Strand Reads

------############################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAGAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAAGAAAAGTACACACACTTCGACAATTGTCGTGGTATGAAATGGAGAAACGGGACGACATATATATGTACACACACATACGTTTGCCTATGTATGTATATATACCCGTGGAAAAGTTTGCGCAGCCAAAATACAAATCGTATATGTGTGTATGTGACCTGCGTACCAGTTGTGTCTGTGTGTGTATGTTTGTACGTTGC
*****************************************************...........((.(((.((((....)))).))).))..........(((((...(((((((((.(((.((........)).))).))))))))).......))))).....************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060655
9x160_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 GSM1528803
follicle cells		 SRR060654
160x9_ovaries_total
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 V053
head
 M047
female body
 SRR060667
160_females_carcasses_total
 M028
head
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
...........AACACCCGCACGCAGACGTCT........................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGCGTACCGGTTGTGTCTGTG.................... 21 1 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TACCAGTTGTGTCTGTGTGTG................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CATGTCAACACCCGCACGCAGA................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GTATATGTGTGTATGTGACCT........................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TATGTGTGTATGTGACCTGCGT.................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CTTATGAGAGATTTTAAA........................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTGACCTGCGTACCAGTT............................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TATGAGAGATTTTAAAAGGTA...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................GCAGACGTCTTATGAGCGAT................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATGTGTGTATGCGACCTGCG..................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CAGACGTCTTGTGAGAGATTTT.............................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTGTGTCTGTGTGTGTATGTT.......... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GTGTGTATGTGACCTGCGTAC.................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGTTGTGTCTGTGTGTGTATG............ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGTATGTGACCTGCGTACCAG............................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................AGTGGAGAAACGGGACGACA............................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGAAAAGTACACACACTTCG.................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TGTATATATACCCGTGGAAA...................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................CGCAGACGTCTTATGAGG.................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CGGGACGTCGTGTATATGTAC................................................................................................................................. 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................GTGGGAAAGGTACACACACTT.................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................CATCGACCATTGTCGTGGAA................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................ATATAAGTACACACTCTTCGA................................................................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................ATTCCCGTCGATAAGTTTGC............................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................AGATTTTAAAAAGTAAGAC.................................................................................................................................................................................................. 19 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................AAACAGGACTACATATAT....................................................................................................................................... 18 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATCTTGTACAGTTGTGGGCGTGCGTCTGCAGAATACTCTCTAAAATTTTCCATTCTTTTCATGTGTGTGAAGCTGTTAACAGCACCATACTTTACCTCTTTGCCCTGCTGTATATATACATGTGTGTGTATGCAAACGGATACATACATATATATGGGCACCTTTTCAAACGCGTCGGTTTTATGTTTAGCATATACACACATACACTGGACGCATGGTCAACACAGACACACACATACAAACATGCAACG
**************************************************************************************...........((.(((.((((....)))).))).))..........(((((...(((((((((.(((.((........)).))).))))))))).......))))).....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060655
9x160_testes_total
 M027
male body		 SRR060687
9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 V116
male body		 SRR060681
Argx9_testes_total
 SRR060670
9_testes_total
 SRR060667
160_females_carcasses_total
........................................................................................................................TGTGTGTGTATGCAAACGGAT.............................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
........................................................................................................................................................................AACGCGTCGGTTTTATGTTT............................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................TGTTAACAGAACCCCACTTTAC............................................................................................................................................................ 22 3 1 1.00 1 0 0 1 0 0 0 0 0
............CGTGGGCGTGCGTCTGCAG............................................................................................................................................................................................................................ 19 1 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................TGCCCTGCTGTATATATACAT.................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................GCTGTTAACAGAACCCCACTTTAC............................................................................................................................................................ 24 3 1 1.00 1 0 0 0 1 0 0 0 0
............AGTGGGCGTGCGTCTGCAGGAT......................................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.............GTGGGCGTGCGTCTGCAGAA.......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................TGCAAGCGGGTACATACATCT.................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................CTTCCTTTTCAAACGCGTCGGT........................................................................ 22 3 2 0.50 1 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................CGGGAGGCATCGTCAACACA......................... 20 3 5 0.20 1 0 0 0 0 1 0 0 0
..................................................................................................................................TGCAAACGGATAGAAACAGATA................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 1 0
..............................................TTTCCCTTCTTTTCATGTGTTTT...................................................................................................................................................................................... 23 3 11 0.09 1 0 0 0 0 0 0 0 1
......................................................................................................................................................................CAAACGGGTCGGTTTTAGGG................................................................. 20 3 15 0.07 1 0 0 0 0 1 0 0 0
................................................................................................................................................................CGTTTCCAAAGGCGTCGGT........................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:8547802-8548052 - dvi_4502 T-AGAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAA------GAA-----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACACAC------ACTTCGACA-------------------------------------------------------------AT-----TGT----------------CGTGG----TATGAAA------TGGAGAA------AC-------GGGAC----------------------------------------GACAT----ATATAT------------------------------------------------------------------------------------GTACACACA------------------CAT----ACGTTTGC-CTAT--------GTATGTATATATACC--CGTGGAAAAGTTTGCGCAGCCAAAATACAAATCGTAT------ATGTGTGTATG---TGACCTGCGTACCAGTTGTGTCTG------------------------------------------TGTGTGTATGTTTGTACGTTGC
droMoj3 scaffold_6540:23746291-23746613 - T-AGAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAA------GAA-----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACACAC------ACAACGACAG---------------------------------------------------------------------T----------------TCTGG----TATGAAA------TGGAG------AAAC-------GAGTCGACA----------------------------------------T----ATGTGT-------GTATGTATGCTCACACATACACACAAGCATTATTTATATATATATATATATATATATATAT----ATATATAT----ATATATATATGTGT----ATATATATATAC----ATATATG-----C--------GTATGTACATATGCC--CGTGGAAAAGTTTGCGCAGCCAAAATACAAATTGTGC------ATGTGTGTATG---TGACCTGCGTACAAGTTTTGACTT--------TGT----------------------------GTGTTTGTACGTTGT----------
droGri2 scaffold_14830:2246156-2246433 - dgr_116 T-AGAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAA------GAA-----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACACACACACACACATTGATA-------------------------------------------------------------AT-----AGT----------------CGTGATGTATGTGAAA------TGGAG------AAAC-------GGGGCAGCA----------------------------------------T----ATGTAT------------------------------------------------------------------------------------ACATACTTACGTCC----GTAATTATGTATGTATGTATGTAT-------------GTACGGACATATGCC--CGTGGAAAAGTTTGCGCAGCCAAAATAAAAA-AGTGCTTAGGTTTGTG--TGTG---TGACCTGCGTGCGAGCTGTGTTTG--------TGT----------------------------GCGTGTGT------TTATACGTTGG
droWil2 scf2_1100000004943:8426423-8426808 + TTGAAACATGTCAACTCCCGCTCGCAGACGTCTGATGAGAGATTTTAAAAGGTAA------GAGCTA---A------GAAA-------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGCAAAGTACACAC------ACTTTGA--GACTTCGT-------------GCCCATTTGTCCCCAACCCCCAATCCGCA----------GTCTCGTGGCT-------TGTGTTGGTAGTAG----TATGAAA------TGGA------GAAAC----CTGTGA-CTACCTATAGGAAAGGGGGGTGCTGC---------TGC-CCAATAC----ATATGAAGAAA------------------------------------------------------CATATGTATCACCTTATATATATGTGTGT--------GT----GTG------TGT----GTGTGTGT-GTGTGTGTGTGTGTGTGTCT-------ATGGTGTGGAAGTTTGCGCAGCCAAAATAATCC-AATGT------ATATATGCATG---TGTA------------AGTGTGTG--------TGTGTGTGTGTATATATATCTAGGTACATATGTATA--T-----------------
dp5 2:22019834-22020143 + T-AAAAAATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAA------GAA-----AACGCCACG-----------------------------------------AAA---AAA-------------------------------------------------------TTAAAAGAA----------------------------------AAAAACGCAAAGTACACAC------ACTTTGAGAGACCTCGTCGTCGTATCCGTCGC----TCGTTCCCCAACC---------C----------AAATCGTGTTT----------------CGTGG----TATGAAA------TGGAG------AAAC----CTGGGGGCTGC--------------------TCTGCTCCCTCTGCCTCAATAC----ATGTGAACGCAGA-----------------------------------------------------------------------------GCAGAC-----------------------------------CATTAT--------GTCTGTAT-------GTCGTGGAAAAGTTTGCGCAGCCAAAATAT-------AC------ACCCATACATA---TTTA--------------TGCATA----------------------------------CATATGCATGTCT-----------------
droPer2 scaffold_3:4801324-4801633 + T-AAAAAATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAA------GAA-----AACGCCACG-----------------------------------------AAA---AAA-------------------------------------------------------TTAAAAGAA----------------------------------AAAAACGCAAAGTACACAC------ACTTTGAGAGACCTCGTCGTCGTATCCGTCGC----TCGTTCCCCAACC---------C----------AAATCGTGTTT----------------CGTGG----TATGAAA------TGGAG------AAAC----CTGGGGGCTGC--------------------TCTGCTCCCTCTGCCTCAATAC----ATGTGAACGCAGA-----------------------------------------------------------------------------GCAGAC-----------------------------------CATTAT--------GTCTGTAT-------GTCGTGGAAAAGTTTGCGCAGCCAAAATAT-------AC------ACCCATACATA---TTTA--------------TGCATA----------------------------------CATATGCATGTCT-----------------
droAna3 scaffold_13340:22997743-22998068 - T-AAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----A-------------------------------TCGAGTCAAAACGGGGCGAAATAGAGGCC-------------------------------------------------------AAAA--------------------------GCCA-----GGCGAAACTCGAAGTACACAC------A-T-CGGGGGACTTCGC---------------C---TCGTCCTCCGCCCCCTATC--------------------------AAGGG-------------GA----CTCG---AAACGTTGGAG------AAAC----CTGGGGGCCGCC----------------------------TCTGC-CCAATAC----ATATGA------------------------------------------------------------------------------------GCAAATATACAGGCAGCCCCCCATA----C----------GGACCAC--------GTCTATAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATGT-------GC------CAGTGTGTATGGTGTA-T------------GGTGTATG--------TGT----------------------------TTGTGTATGAGTGGTTG-------A
droBip1 scf7180000396395:12338-12655 - TAAAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----A-------------------------------TCGAGTCGAAACGGGGCGAAATGGAGGCC-------------------------------------------------------AAAA--------------------------GCCA-----GGCGAAACTCGAAGTACACAC------A-T-CGGGGGACTTCGC---------------C---TCGTCCTCCGCCCCCTTCC--------------------------GAGGG-------------GA----CTCG---AAACGTTGGAG------AAAC----CTGGGGGCCGCC----------------------------TCTGC-CCAATAC----ATATGA------------------------------------------------------------------------------------GCAAATATACAGGCAGC-CCCCATAC--------------GGACCAC--------GTCTATAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATGT-------GC------CAGTG--TATGG--TGT------------------ATG--------TGT----------------------TC----CTGTGTATGAGTGGTTG--------
droKik1 scf7180000302634:473480-473828 - T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----AACGGCA-GAAAAGAAAAGGGAAAGGAAGGAGT-----G----------------GATGAA-------------------------------------------------------AA-----------------------AATAAGGAA-----GGAGAGATGCGAAGTACATAC------CGT-C-------------GTCGGATTT----------------------------TGCGTGTTCGATTCGATTCGTGTTTCAAGTATCGTTTT---CGTGG----TACGAA-AAATGTTGGAGAAAACGAAACGAGACTGGGGGCTG----------------------C---------TGC-CCAATAC----ATATAG------------------------------------------------------------------------------------GCAAACACGCAGTC----ATCCATATGTATATATGTATGTAAAAC-C--------GTGTGTAT-------GTGGTGGAAAAGTTTGCGCAGCCAAAATA-----------------------CATG---TGCC------------TGTGGGA--------------------------------------------GTGTGAGTGTGTG--------
droFic1 scf7180000453850:130503-130871 - T-GAAACATGTCAACACCCGCTCGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAAACGA--AA---------AGAA-----------ACGAAT-----CGAA-----GTGAA-AAG-----AAAAGG----------------------------------AAAGGAAA-----CGCATCGCAACGAAATGAAAACAAGATAATAAG-CAGGAGCAACGAAACGCGAAATACACAC------AAT-A-------------TTTGGATTT----------------------------TGCG----------AATTCGTAATT----------------CGTGG----TACGAGAAAATGTTGGTGAAAA-GAAAC----CTGGG-G-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACAGGC----GTACATACATAC----ATGTGTGCTCTAT--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTTCATG---TGCT------------TATATATATT--TG--TGT----------------------------GTGTGTGAGAGTGGTTG--------
droEle1 scf7180000491104:2573997-2574326 - T-GAACCATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTCAAAAGGTGA------GAA-----AA------GAAAAGAA---------------AA-----CG-------------------------------AAACAAAAC----------GCAAGGAAAGGAAAGTAAA-----GTAAAGGAAAAGAATGGAAAACACGAAAATCAG-CAGGAGAAGCCAATCTCGAAATACAA--------AAT-C-------------GTCGGATTT----------------------------TTCG----------GATTCGTGTTT----------------CGTGG----TGCGAAAAAATGTTGGAGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAATATA------------------TAT----ATGTGTGCTCTAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ATATGT-----------------------------------------------------------------------GACTGTGTGAGTGGTTG--------
droRho1 scf7180000776814:13085-13419 - T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAAACGA--AA---------AAAA-----------AGAAAA-----CGAA-----GCAAA-----------------------------------------A-----GGAAAGGAAA-----GTAAA-----GGAAAAGAAAGCAGGAAAATAAG-CAGGAGAAGTTAATCGCGAACTACAC----------T-C-------------GTCGAATTT----------------------------GGCG----------GATTCGTGTTT----------------CGTGG----TGCGAAAAAATGTTGGAGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGGC----GCACATACATAT------GTGTGCTCTAC--------GTCTGTAT-------GTAGAGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TGAC--------------------------------------------------------------TGTGTGAGTGGTTG--------
droBia1 scf7180000302411:528016-528355 - T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTCAAAAGGTGA------GAA-----AA------GAAAACCC-----------AG--------------G---GC----AAG-----CAAAGG----------------------------------ACGGGAAACAAATCGAGTCGAGTCGAAAGGAAAGCAGGAAAGCG-------AGAGGCGAGTCGCGAAGTACACAC------TAT-C-------------GTCGGATT-----------------------------CGCG----------GATTCGTGTTT----------------CGTGG----TGCGAAAAAATGTTGGAGAAAA-GAAAC----CTGGGG-CTGC--------------------GC---------TGC-CCAATACATACATATAA------------------------------------------------------------------------------------GCGAACACACGACC----GCACATACGCGT----GTGTGTGCCCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAC-------CT------ACGAGT-------------------------------------------------------------------------GTGTGTGAGTGGTTG--------
droTak1 scf7180000415789:477917-478261 - T-GAAACATGTCAACACCCGCTCGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----AA------GAAAACTAGAGGAAAGGCAAGGAAT-----CGAA-T-----------------------------------C----------GAAA------------------------------GGAAAGGAACGCAGGAAAACG-------AGAGGCGAATCGCGAAGA------------AAT-C-------------GTCGGATTT----------------------------TGCG----------AATTCGTGATT----------------CGTGG----TGCGAAAAAATGTTGGAGAAAA-GAAAC----CTGGGG-CTGC--------------------GC---------TGC-CCAATACATACATATAC------------------------------------------------------------------------------------GCAAACACACGGTC----GCACTTATGTA--------TGTGCTCTAT--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCTTG---TGGC------------TGTGTGTG------CGCGA----------------------------GTGTGTGTGAGTGGTTG--------
droEug1 scf7180000409759:732223-732546 - T-GAACCATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAAATGTGGGAACTGAAAA------GAAAACTA-----------AT--------------G------GA-AAG-----AAAAGG----------------------------------AC--------------------TCGAACGGAAAGCAGGAAAATT-------ATAAGCAAGTCGCGAGTTTCAC--------AGT-C-------------GTCGGATTT----------------------------TGCA----------GTTTCGTG----------------------GG----TTGAAAAAAATGTTGGAGAAAA-GAAAC----CTGGG-G-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGGC----GCACATATGTGT---------------GT--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TGTC--------------TTCATG--------TGT----------------------------GTGTGTGTGAGTGGTTG--------
dm3 chr3R:777861-778224 - T-GAAAAATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----GAA---------ACTA-----------AGGAAT-----CGAA-T---GCGAA-TAG-----AAAAGAATACAAACAAAAC----------GAAA------------------------------GCAAAGGAAAACAGGAAGGCA-------AGGAGCGAATGGCAAAGTACACAC------AAC-C-------------GTTGGATTT----------------------------TACGTTT---------TACGTGTTT----------------CTCGT----TCCGAAAAAATGCTGGGGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGAC----ACACGTATATAT----GACTGTGCTCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TGCC------------CATGCTCGTGTG--CGTGT----------------------------GCGTGTGTGAGTGGTTG--------
droSim2 3r:705265-705621 - dsi_21962 T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----GAA---------ACTA-----------AGGAAT-----CGAA-T---GCGAA-TAG-----AAAAGAATACAAACAAAAC----------CAAA------------------------------GCAAAGGAAAACAGGAAAACA-------AGGAGCGAATCGCAAAGTACACAC------AAT-C-------------GTTGGATTT----------------------------TACG----------GATTCGTGTTT----------------CGCAG----TGCGAAAAAATGTTGGGGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGGC----ACACGTATATAT----GACTGTGCTCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TGCC------------CGTGCTCG--------TGT----------------------------GCGTGTGTGAGTGGTTG--------
droSec2 scaffold_6:908247-908603 - T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----GAA---------ACTA-----------AGGAAT-----CGAA-T---GCGAA-TAG-----AAAAGAATACAAACAAAAC----------GAAA------------------------------GCAAAGGAAAACAGGAAAACA-------AGGAGCGAATCGCAAAGTACACAC------AAT-C-------------GTTGGATTT----------------------------TACA----------GATTCGTGTTT----------------CGCAG----TGCGAAAAAATGTTGGGGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGGC----ACACGTATATAT----GAATGTGCTCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TGCC------------CGTGCTCG--------TGT----------------------------GCGTGTGTGAGTGGTTG--------
droYak3 3R:1117770-1118124 - T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----GAA---------ACTA-----------AGGAGT-----GGAA-----GTGAT-TCG-----AAA-----ATAAGCAAAGCGGAGCTGGGCAAAA------------------------------GCAAAGGAGAGCAGGAAAACG-------AGAAGCGAAGCGCAAAGTACACAC------AAT-A-------------GTCGCATTT----------------------------TGCA----------GATTTGTGTTT----------------TGCTG----TGCCAAAAAATGTTGGAGAAAA-GAAAC----CTAGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACTCGGGC----ATACATT------------TGAGCTCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAA-------GT------ACGTGTGCACG---TTCC------------CGTGCTCTTG--TG--TGT----------------------------GTGTGTGTGAGTGGT----------
droEre2 scaffold_4770:1075185-1075544 - T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----GAA---------ACTA-----------AGGAATGGAGTCGAA-T---GCGAA-AAA-----AA--------AAACAAAACAGAGATGGGCGAAA------------------------------GCAAAGGAAAGCAGGAAAACG-------AGGATCGAGTCTCAAAGTACACAC------AAT-C-------------GTCTGATTT----------------------------TTCG----------GATTCGTGTTC----------------CGCGG----TGCGAAAAAATGTTGGAGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CTAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGGC----GCACATA----T----GAGTGTGCTCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TACC------------CGTGCTCG--------TGT----------------------------GTGTGTGTGAGTGGTTG--------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
T-AGAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAA------GAA-----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACACAC------ACTTCGACA-------------------------------------------------------------AT-----TGT----------------CGTGG----TATGAAA------TGGAGAA------AC-------GGGAC----------------------------------------GACAT----ATATAT------------------------------------------------------------------------------------GTACACACA------------------CAT----ACGTTTGC-CTAT--------GTATGTATATATACC--CGTGGAAAAGTTTGCGCAGCCAAAATACAAATCGTAT------ATGTGTGTATG---TGACCTGCGTACCAGTTGTGTCTG------------------------------------------TGTGTGTATGTTTGTACGTTGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............AACACCCGCACGCAGACGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000020000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGTTGTGTCTG------------------------------------------TGTGTG................2112.002000002000000000000000000000000000000000000000000000000000000000
......CATGTCAACACCCGCACGCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAT------ATGTGTGTATG---TGACCT..................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------ATGTGTGTATG---TGACCTGCGT..............................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
...............................CTTATGAGAGATTTTAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TGACCTGCGTACCAGTT.......................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
.................................TATGAGAGATTTTAAAAGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTCTG------------------------------------------TGTGTGTATGTT..........2111.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATG---TGACCTGCGTAC............................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTGTCTG------------------------------------------TGTGTGTATG............2111.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATG---TGACCTGCGTACCAG.........................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
......................................................A------GAA-----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACACAC------ACTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATATACC--CGTGGAAA.........................................................................................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
......................CGCAGACGTCTTATGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
droMoj3
T-AGAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAA------GAA-----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACACAC------ACAACGACAG---------------------------------------------------------------------T----------------TCTGG----TATGAAA------TGGAG------AAAC-------GAGTCGACA----------------------------------------T----ATGTGT-------GTATGTATGCTCACACATACACACAAGCATTATTTATATATATATATATATATATATATAT----ATATATAT----ATATATATATGTGT----ATATATATATAC----ATATATG-----C--------GTATGTACATATGCC--CGTGGAAAAGTTTGCGCAGCCAAAATACAAATTGTGC------ATGTGTGTATG---TGACCTGCGTACAAGTTTTGACTT--------TGT----------------------------GTGTTTGTACGTTGT----------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGC------ATGTGTGTATG---TGACCT..................................................................................2511.001000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------ATGTGTGTATG---TGACCTGCG...............................................................................2111.001001000
droGri2
T-AGAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAA------GAA-----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACACACACACACACATTGATA-------------------------------------------------------------AT-----AGT----------------CGTGATGTATGTGAAA------TGGAG------AAAC-------GGGGCAGCA----------------------------------------T----ATGTAT------------------------------------------------------------------------------------ACATACTTACGTCC----GTAATTATGTATGTATGTATGTAT-------------GTACGGACATATGCC--CGTGGAAAAGTTTGCGCAGCCAAAATAAAAA-AGTGCTTAGGTTTGTG--TGTG---TGACCTGCGTGCGAGCTGTGTTTG--------TGT----------------------------GCGTGTGT------TTATACGTTGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......CATGTCAACACCCGCACGCAGACGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
..........................GACGTCTTATGAGAGATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAGTTTGCGCAGCC............................................................................................................................2011.00110
................CCCGCACGCAGACGTCTTATGAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
.......ATGTCAACACCCGCACGCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
droWil2
TTGAAACATGTCAACTCCCGCTCGCAGACGTCTGATGAGAGATTTTAAAAGGTAA------GAGCTA---A------GAAA-------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGCAAAGTACACAC------ACTTTGA--GACTTCGT-------------GCCCATTTGTCCCCAACCCCCAATCCGCA----------GTCTCGTGGCT-------TGTGTTGGTAGTAG----TATGAAA------TGGA------GAAAC----CTGTGA-CTACCTATAGGAAAGGGGGGTGCTGC---------TGC-CCAATAC----ATATGAAGAAA------------------------------------------------------CATATGTATCACCTTATATATATGTGTGT--------GT----GTG------TGT----GTGTGTGT-GTGTGTGTGTGTGTGTGTCT-------ATGGTGTGGAAGTTTGCGCAGCCAAAATAATCC-AATGT------ATATATGCATG---TGTA------------AGTGTGTG--------TGTGTGTGTGTATATATATCTAGGTACATATGTATA--T-----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................GCAGACGTCTGATGAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200
..................................................................................................................................................................................................................................................................................................................CGCA----------GTCTCGTGGCT-------TGTGTTGGTA....................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
......CATGTCAACTCCCGCTCGCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACCTATAGGAAAGGGGGGTGC..............................................................................................................................................................................................................................................................................................................................................2111.00100001
.............ACTCCCGCTCGCAGACGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATATATATCTAGG................................1911.00101000
....................CTCGCAGACGTCTGATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCT-------ATGGTGTGGAAA.......................................................................................................................................2011.00100001
......................CGCAGACGTCTGATGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
................................TGATGAGAGATTTTAAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGT-GTGTGTGTGTGTGTGTGTC...........................................................................................................................................................26200.05100010
dp5
T-AAAAAATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAA------GAA-----AACGCCACG-----------------------------------------AAA---AAA-------------------------------------------------------TTAAAAGAA----------------------------------AAAAACGCAAAGTACACAC------ACTTTGAGAGACCTCGTCGTCGTATCCGTCGC----TCGTTCCCCAACC---------C----------AAATCGTGTTT----------------CGTGG----TATGAAA------TGGAG------AAAC----CTGGGGGCTGC--------------------TCTGCTCCCTCTGCCTCAATAC----ATGTGAACGCAGA-----------------------------------------------------------------------------GCAGAC-----------------------------------CATTAT--------GTCTGTAT-------GTCGTGGAAAAGTTTGCGCAGCCAAAATAT-------AC------ACCCATACATA---TTTA--------------TGCATA----------------------------------CATATGCATGTCT-----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................CGCAGACGTCTTATGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
........................................................................................................................................................................................................................................................................................................AACC---------C----------AAATCGTGTTT----------------CGTGG----............................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-----------------------------------CATTAT--------GTCTGTAT-------GTCGT..............................................................................................................................................2211.0010100000000
...........CAACACCCGCACGCAGACGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................AGACCTCGTCGTCGTATCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................CGCAGACGTCTTATGAGAGATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
................CCCGCACGCAGACGTCTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GGCTGC--------------------TCTGCTCCCTCTGCC..............................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................TTTGAGAGACCTCGTCGTCGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................................ACAC------ACTTTGAGAGACCTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAGTTTGCGCAGCCA...........................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................C----ATGTGAACGCAGA-----------------------------------------------------------------------------GCAGAC-----------------------------------................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC----ATGTGAACGCAGA-----------------------------------------------------------------------------GCAGA....................................................................................................................................................................................................................2111.0010000001000
......................................................................................................................................................................................................................................................................................................................................................................TGAAA------TGGAG------AAAC----CTGGGGT.....................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAT-------GTCGTGGAAAAGTT.....................................................................................................................................2011.0010000001000
..............................................................................................................................................................................................................................................TACACAC------ACTTTGAGAGACCTCGTCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001000
..................CGCACGCAGACGTCTTATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
........................CAGACGTCTTATGAGAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........CAACACCCGCACGCAGACGTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
T-AAAAAATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAA------GAA-----AACGCCACG-----------------------------------------AAA---AAA-------------------------------------------------------TTAAAAGAA----------------------------------AAAAACGCAAAGTACACAC------ACTTTGAGAGACCTCGTCGTCGTATCCGTCGC----TCGTTCCCCAACC---------C----------AAATCGTGTTT----------------CGTGG----TATGAAA------TGGAG------AAAC----CTGGGGGCTGC--------------------TCTGCTCCCTCTGCCTCAATAC----ATGTGAACGCAGA-----------------------------------------------------------------------------GCAGAC-----------------------------------CATTAT--------GTCTGTAT-------GTCGTGGAAAAGTTTGCGCAGCCAAAATAT-------AC------ACCCATACATA---TTTA--------------TGCATA----------------------------------CATATGCATGTCT-----------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------GTCGTGGAAAAGTTTGCGCAT..............................................................................................................................2211.001010000
..............................................................................................................................................................................................................................................................................TCGTATCCGTCGC----TCGTTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
......................CGCAGACGTCTTATGAGAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.............................................................................................................................................................................................................................................GTACACAC------ACTTTGAGAGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............ACACCCGCACGCAGACGTCTTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.....................................................................................................................................................................................................................................................................................................................C----------AAATCGTGTTT----------------CGTGG----TAT.........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...................GCACGCAGACGTCTTATGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAACGCAGA-----------------------------------------------------------------------------GCAGAC-----------------------------------................................................................................................................................................................................1911.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------GTCGTGGAAAAGTTTGCG.................................................................................................................................2111.001010000
droAna3
T-AAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----A-------------------------------TCGAGTCAAAACGGGGCGAAATAGAGGCC-------------------------------------------------------AAAA--------------------------GCCA-----GGCGAAACTCGAAGTACACAC------A-T-CGGGGGACTTCGC---------------C---TCGTCCTCCGCCCCCTATC--------------------------AAGGG-------------GA----CTCG---AAACGTTGGAG------AAAC----CTGGGGGCCGCC----------------------------TCTGC-CCAATAC----ATATGA------------------------------------------------------------------------------------GCAAATATACAGGCAGCCCCCCATA----C----------GGACCAC--------GTCTATAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATGT-------GC------CAGTGTGTATGGTGTA-T------------GGTGTATG--------TGT----------------------------TTGTGTATGAGTGGTTG-------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
T-AAAACATGTCAACACCCGCACGCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..................CGCACGCAGACGTCTTATGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....ACATGTCAACACCCGCACGCAGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............AACACCCGCACGCAGACGTCTTATGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..................................................................................................................................................................................................................................................CAC------A-T-CGGGGGACTTCGC---------------C---TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.....................ACGCAGACGTCTTATGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
..................CGCACGCAGACGTCTTATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGGTGTA-T------------GGTGTATG--------........................................................2311.001000010
......................CGCAGACGTCTTATGAGAGATTTTAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
............AACACCCGCACGCAGACGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGGCAGCCCCCCATA----C----------GG...............................................................................................................................................................................2111.001100000
droBip1
TAAAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----A-------------------------------TCGAGTCGAAACGGGGCGAAATGGAGGCC-------------------------------------------------------AAAA--------------------------GCCA-----GGCGAAACTCGAAGTACACAC------A-T-CGGGGGACTTCGC---------------C---TCGTCCTCCGCCCCCTTCC--------------------------GAGGG-------------GA----CTCG---AAACGTTGGAG------AAAC----CTGGGGGCCGCC----------------------------TCTGC-CCAATAC----ATATGA------------------------------------------------------------------------------------GCAAATATACAGGCAGC-CCCCATAC--------------GGACCAC--------GTCTATAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATGT-------GC------CAGTG--TATGG--TGT------------------ATG--------TGT----------------------TC----CTGTGTATGAGTGGTTG--------SizeHit CountTotal NormTotal
No Reads
droKik1
T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----AACGGCA-GAAAAGAAAAGGGAAAGGAAGGAGT-----G----------------GATGAA-------------------------------------------------------AA-----------------------AATAAGGAA-----GGAGAGATGCGAAGTACATAC------CGT-C-------------GTCGGATTT----------------------------TGCGTGTTCGATTCGATTCGTGTTTCAAGTATCGTTTT---CGTGG----TACGAA-AAATGTTGGAGAAAACGAAACGAGACTGGGGGCTG----------------------C---------TGC-CCAATAC----ATATAG------------------------------------------------------------------------------------GCAAACACGCAGTC----ATCCATATGTATATATGTATGTAAAAC-C--------GTGTGTAT-------GTGGTGGAAAAGTTTGCGCAGCCAAAATA-----------------------CATG---TGCC------------TGTGGGA--------------------------------------------GTGTGAGTGTGTG--------SizeHit CountTotal NormTotal
No Reads
droFic1
T-GAAACATGTCAACACCCGCTCGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAAACGA--AA---------AGAA-----------ACGAAT-----CGAA-----GTGAA-AAG-----AAAAGG----------------------------------AAAGGAAA-----CGCATCGCAACGAAATGAAAACAAGATAATAAG-CAGGAGCAACGAAACGCGAAATACACAC------AAT-A-------------TTTGGATTT----------------------------TGCG----------AATTCGTAATT----------------CGTGG----TACGAGAAAATGTTGGTGAAAA-GAAAC----CTGGG-G-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACAGGC----GTACATACATAC----ATGTGTGCTCTAT--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTTCATG---TGCT------------TATATATATT--TG--TGT----------------------------GTGTGTGAGAGTGGTTG--------SizeHit CountTotal NormTotal
No Reads
droEle1
T-GAACCATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTCAAAAGGTGA------GAA-----AA------GAAAAGAA---------------AA-----CG-------------------------------AAACAAAAC----------GCAAGGAAAGGAAAGTAAA-----GTAAAGGAAAAGAATGGAAAACACGAAAATCAG-CAGGAGAAGCCAATCTCGAAATACAA--------AAT-C-------------GTCGGATTT----------------------------TTCG----------GATTCGTGTTT----------------CGTGG----TGCGAAAAAATGTTGGAGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAATATA------------------TAT----ATGTGTGCTCTAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ATATGT-----------------------------------------------------------------------GACTGTGTGAGTGGTTG--------SizeHit CountTotal NormTotal
No Reads
droRho1
T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAAACGA--AA---------AAAA-----------AGAAAA-----CGAA-----GCAAA-----------------------------------------A-----GGAAAGGAAA-----GTAAA-----GGAAAAGAAAGCAGGAAAATAAG-CAGGAGAAGTTAATCGCGAACTACAC----------T-C-------------GTCGAATTT----------------------------GGCG----------GATTCGTGTTT----------------CGTGG----TGCGAAAAAATGTTGGAGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGGC----GCACATACATAT------GTGTGCTCTAC--------GTCTGTAT-------GTAGAGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TGAC--------------------------------------------------------------TGTGTGAGTGGTTG--------SizeHit CountTotal NormTotal
No Reads
droBia1
T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTCAAAAGGTGA------GAA-----AA------GAAAACCC-----------AG--------------G---GC----AAG-----CAAAGG----------------------------------ACGGGAAACAAATCGAGTCGAGTCGAAAGGAAAGCAGGAAAGCG-------AGAGGCGAGTCGCGAAGTACACAC------TAT-C-------------GTCGGATT-----------------------------CGCG----------GATTCGTGTTT----------------CGTGG----TGCGAAAAAATGTTGGAGAAAA-GAAAC----CTGGGG-CTGC--------------------GC---------TGC-CCAATACATACATATAA------------------------------------------------------------------------------------GCGAACACACGACC----GCACATACGCGT----GTGTGTGCCCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAC-------CT------ACGAGT-------------------------------------------------------------------------GTGTGTGAGTGGTTG--------SizeHit CountTotal NormTotal
No Reads
droTak1
T-GAAACATGTCAACACCCGCTCGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----AA------GAAAACTAGAGGAAAGGCAAGGAAT-----CGAA-T-----------------------------------C----------GAAA------------------------------GGAAAGGAACGCAGGAAAACG-------AGAGGCGAATCGCGAAGA------------AAT-C-------------GTCGGATTT----------------------------TGCG----------AATTCGTGATT----------------CGTGG----TGCGAAAAAATGTTGGAGAAAA-GAAAC----CTGGGG-CTGC--------------------GC---------TGC-CCAATACATACATATAC------------------------------------------------------------------------------------GCAAACACACGGTC----GCACTTATGTA--------TGTGCTCTAT--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCTTG---TGGC------------TGTGTGTG------CGCGA----------------------------GTGTGTGTGAGTGGTTG--------SizeHit CountTotal NormTotal
No Reads
droEug1
T-GAACCATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTAAATGTGGGAACTGAAAA------GAAAACTA-----------AT--------------G------GA-AAG-----AAAAGG----------------------------------AC--------------------TCGAACGGAAAGCAGGAAAATT-------ATAAGCAAGTCGCGAGTTTCAC--------AGT-C-------------GTCGGATTT----------------------------TGCA----------GTTTCGTG----------------------GG----TTGAAAAAAATGTTGGAGAAAA-GAAAC----CTGGG-G-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGGC----GCACATATGTGT---------------GT--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TGTC--------------TTCATG--------TGT----------------------------GTGTGTGTGAGTGGTTG--------SizeHit CountTotal NormTotal
No Reads
dm3
T-GAAAAATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----GAA---------ACTA-----------AGGAAT-----CGAA-T---GCGAA-TAG-----AAAAGAATACAAACAAAAC----------GAAA------------------------------GCAAAGGAAAACAGGAAGGCA-------AGGAGCGAATGGCAAAGTACACAC------AAC-C-------------GTTGGATTT----------------------------TACGTTT---------TACGTGTTT----------------CTCGT----TCCGAAAAAATGCTGGGGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGAC----ACACGTATATAT----GACTGTGCTCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TGCC------------CATGCTCGTGTG--CGTGT----------------------------GCGTGTGTGAGTGGTTG--------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.............................................................................................................................................................................................................AGGAAGGCA-------AGGAGCGAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................GGGAAAA-GAAAC----CTGGGGG-------------------------C---------TT................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................TATGAGAGATTTTAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.......ATGTCAACACCCGCACGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................C-C-------------GTTGGATTT----------------------------TACGTTT---------TAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
....................CACGCAGACGTCTTATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------------------------------------------------GCAAACACACGGAC----ACACGT.................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................AAT-----CGAA-T---GCGAA-TAG-----AAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTATGAGAGATTTTAAAAGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
................CCCGCACGCAGACGTCTTATGAGAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------GTCTGTAT-------GTAGTGGAAAAGTTTGC..................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................ACACAC------AAC-C-------------GTTGGATTT----------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC------------CATGCTCGTGTG--CGTG......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..................CGCACGCAGACGTCTTATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................CTTATGAGAGATTTTAAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AACACCCGCACGCAGACGTCTTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATAT----GACTGTGCTCCAC--------GTC...............................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC------------CATGCTCGTGTG--CGTGT----------------------------GCG......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTAT-------GTAGTGGAAA.........................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TGCC------------CATGCTCGTGTG--CGTG......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAAATAT-------GT------ACGTGTGC..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................CTGGGGAAAA-GAAAC----CTGGGG......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................................................AA---------ACTA-----------AGGAAT-----CGAA-T---GCGAA-TAG-----A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCTCCAC--------GTCTGTAT-------G..................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------CATGCTCGTGTG--CGTGT----------------------------GCGTGTGTG................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.............................................TAAAAGGTGA------GAA-----GAA---------ACTA-----------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................CTGGGGG-------------------------C---------TGC-CCAATAC----ATA................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............AACACCCGCACGCAGACGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..GAAAAATGTCAACACCCGCACGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--CGTGT----------------------------GCGTGTGTGAGTGGT..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGGAAAAGTTTGCGCAG..............................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTATGAGAGATTTTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AACACCCGCACGCAGACGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................ATGGCAAAGTACACAC------AAC-C-------------GT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------GT------ACGTGTGCATG---TGCC------------CATGCT..................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................AAAAGGTGA------GAA-----GAA---------ACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................CGCACGCAGACGTCTTATGAGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AACAGGAAGGCA-------AGGAGCGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.......................................................................................................................................................................................................................................GGCAAAGTACACAC------AAC-C-------------GTTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTG--CGTGT----------------------------GCGTGTGTGA...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................AA---------ACTA-----------AGGAAT-----CGAA-T---GCGAA-TAG-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GCTGGGGAAAA-GAAAC----CTGGG.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
droSim2
T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----GAA---------ACTA-----------AGGAAT-----CGAA-T---GCGAA-TAG-----AAAAGAATACAAACAAAAC----------CAAA------------------------------GCAAAGGAAAACAGGAAAACA-------AGGAGCGAATCGCAAAGTACACAC------AAT-C-------------GTTGGATTT----------------------------TACG----------GATTCGTGTTT----------------CGCAG----TGCGAAAAAATGTTGGGGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGGC----ACACGTATATAT----GACTGTGCTCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TGCC------------CGTGCTCG--------TGT----------------------------GCGTGTGTGAGTGGTTG--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----ACACGTATATAT----GACTG..................................................................................................................................................................................1813.00321000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGGC----ACACGTATATAT----GACTG..................................................................................................................................................................................2413.00330000000000000000
....................................................................................................................................................................................................................................................................................................................CG----------GATTCGTGTTT----------------CGCAG----TGC.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------GTCTGTAT-------GTAGTGGAAAAG.......................................................................................................................................2111.00100000010000000000
........TGTCAACACCCGCACGCAGACGTCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
...............ACCCGCACGCAGACGTCTTATGAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
............AACACCCGCACGCAGACGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................CGTCTTATGAGAGATTTTAAAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
..................CGCACGCAGACGTCTTATGAGAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----GACTGTGCTCCAC--------GTCTG.............................................................................................................................................................2111.00100000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCCAC--------GTCTGTAT-------G..................................................................................................................................................1811.00110000000000000000
.................CCGCACGCAGACGTCTTATGAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
...........................................................................................................................................................................................................................................AAGTACACAC------AAT-C-------------GTTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..................CGCACGCAGACGTCTTATGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
.................................................AGGTGA------GAA-----GAA---------ACTA-----------AGGAAT-----CGAA-T---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
..............CACCCGCACGCAGACGTCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
droSec2
T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----GAA---------ACTA-----------AGGAAT-----CGAA-T---GCGAA-TAG-----AAAAGAATACAAACAAAAC----------GAAA------------------------------GCAAAGGAAAACAGGAAAACA-------AGGAGCGAATCGCAAAGTACACAC------AAT-C-------------GTTGGATTT----------------------------TACA----------GATTCGTGTTT----------------CGCAG----TGCGAAAAAATGTTGGGGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGGC----ACACGTATATAT----GAATGTGCTCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TGCC------------CGTGCTCG--------TGT----------------------------GCGTGTGTGAGTGGTTG--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................GCACGCAGACGTCTTATGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020110
.............ACACCCGCACGCAGACGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................................................................................................................................................AAC----------GAAA------------------------------GCAAAGGAAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...........CAACACCCGCACGCAGACGTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.....ACATGTCAACACCCGCACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
......................CGCAGACGTCTTATGAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
...................................................................................................................................................................................................................................................................................................................ACA----------GATTCGTGTTT----------------CGCAG----T...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
..................CGCACGCAGACGTCTTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
....................................................TGA------GAA-----GAA---------ACTA-----------AGGAAT-----CG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCTCCAC--------GTCTGTAT-------G..................................................................................................................................................2111.0010001
....................................................................................................................................................................................................................................................................................................................................................................TGCGAAAAAATGTTGGGGAAA.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...............................................AAAGGTGA------GAA-----GAA---------ACTA-----------AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GAATGTGCTCCAC--------GTCTGT............................................................................................................................................................2011.0010100
.........................AGACGTCTTATGAGAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCG--------TGT----------------------------GCGTGTGTGAGTG............2111.0010001
droYak3
T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----GAA---------ACTA-----------AGGAGT-----GGAA-----GTGAT-TCG-----AAA-----ATAAGCAAAGCGGAGCTGGGCAAAA------------------------------GCAAAGGAGAGCAGGAAAACG-------AGAAGCGAAGCGCAAAGTACACAC------AAT-A-------------GTCGCATTT----------------------------TGCA----------GATTTGTGTTT----------------TGCTG----TGCCAAAAAATGTTGGAGAAAA-GAAAC----CTAGGGG-------------------------C---------TGC-CCAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACTCGGGC----ATACATT------------TGAGCTCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAA-------GT------ACGTGTGCACG---TTCC------------CGTGCTCTTG--TG--TGT----------------------------GTGTGTGTGAGTGGT----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAA------------------------------------------------------------------------------------GCAAACACTCGGGC----ATA....................................................................................................................................................................................................2111.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TTCC------------CGTGCTCTTG--TG--TGT----------------------------GTGTG....................2511.00100000010000
T-GAAACATGTCAACACCCGCACGCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50101000000000
...............................CTTATGAGAGATTTTAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000010000
T-GAAACATGTCAACACCCGCACGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50101000000000
...............................CTTATGAGAGATTTTAAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
.....................ACGCAGACGTCTTATGAGAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
............................................................................................................................................AAGCAAAGCGGAGCTGGGCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
droEre2
T-GAAACATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGGTGA------GAA-----GAA---------ACTA-----------AGGAATGGAGTCGAA-T---GCGAA-AAA-----AA--------AAACAAAACAGAGATGGGCGAAA------------------------------GCAAAGGAAAGCAGGAAAACG-------AGGATCGAGTCTCAAAGTACACAC------AAT-C-------------GTCTGATTT----------------------------TTCG----------GATTCGTGTTC----------------CGCGG----TGCGAAAAAATGTTGGAGAAAA-GAAAC----CTGGGGG-------------------------C---------TGC-CTAATAC----ATATAA------------------------------------------------------------------------------------GCAAACACACGGGC----GCACATA----T----GAGTGTGCTCCAC--------GTCTGTAT-------GTAGTGGAAAAGTTTGCGCAGCCAAAATAT-------GT------ACGTGTGCATG---TACC------------CGTGCTCG--------TGT----------------------------GTGTGTGTGAGTGGTTG--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............CACCCGCACGCAGACGTCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0022000000
..............CACCCGCACGCAGACGTCTTATGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.....................ACGCAGACGTCTTATGAGAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
...................GCACGCAGACGTCTTATGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.....ACATGTCAACACCCGCACGCAGACGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
......................CGCAGACGTCTTATGAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.............ACACCCGCACGCAGACGTCTTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
.....................ACGCAGACGTCTTATGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
............AACACCCGCACGCAGACGTCTTATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..................................ATGAGAGATTTTAAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------ACGTGTGCATG---TACC------------CGTGCTCG--------TGT----------------------------.........................2811.0010001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCG--------TGT----------------------------GTGTGTGTGA...............1840.2510000010

Generated: 05/16/2015 at 11:46 PM