dvi_4486

Species	Coordinate	ID	Alignment
droVir3	scaffold_12855:8366379-8366629 -	dvi_4486	GCTGGTAAACGAGCAGCACGAGACGGACAACGAGTCCGAGATGCTGTTAGGTAAGTGTGCAGCGGGGGGGTAGGAA-ATAATAAAGGATATGGCAACAA-------TTGCTGATACT----------------CATCCAA--------ATTCGCAGGCAACAGCAGCATTTGGGTTCAGCAGCACACCATCTACTATCGTCCCGTCGAGGAGGAGCTGCTTGCCG---------CC------GGCGGTTCT---GGTGCCAACAGCTCTTGCAGCAGCAGCAGCGGCAGTCAGGCCCACAA------
droMoj3	scaffold_6540:23584295-23584536 -		GCTAGTCAACGAGCAGCACGAGACGGACAACGAGTCCGAGATGCTGCTAGGTAAGT------------------GGAATTAGAAAGAGTCC----TTTAAGCGAGTGG----AT-CTATTTAAG---CTAATCCATCTAA-----TCCATCTGTAGGCAATAGCAGCATTTGGGTGCAGCAGCACACCATCTTCTATCGCCCCGTCGAGGAGGAACTCGCTGGCGGATCT---GG--GCCA---AACAGC----TCCTGCAGCAGTAGCAGCA------------GCAGTCAGGCCCACAA------
droGri2	scaffold_15074:4961189-4961420 -		GCTGGTCAACGAGCACAACGAGACGGACAATGAGTCCGAGATGCTGCTGGGTGAGT------------------AC-ATCACAAAGAATGC----ACAA-------TG----AT-TTCATCAAGTAATCAATCCATTTT-TTGAAAATATGAACAGGCAACAGCAGCATTTGGGTGCAACAGCACACCATCTATTATCGTCCTGTGGAGGAGGAGAATG---------------------------TGGCATCCACTGCCAATAGCTCGTGCA------------GCAGCAGCAGTCAGACATACAA
droWil2	scf2_1100000004943:15075255-15075434 +		TCTTGTTAATGAGCAACCCGAGACTGATAATGAATCGGAGACATTGCTGG----------------------------------------------------------------------------------------------------------GCAATCCTAGCATCTGGGCACAACAACATACCATATACTATAGGCCAGTTGATGAGGAGACTGG---CGGAAAT---ACAGGAGGAGCAGCCACC---TCGAGTACAAGCTCTTGCA------------GTAGCGGTGGAGTTCAACAACA
dp5	2:22177814-22177987 +		GCTGGTCAACGAGCAGCCTGAGACCGATAACGAGTCGGAGACGCTGCTGG----------------------------------------------------------------------------------------------------------GCAACGCGAGCATCTGGGTGCAGCAGCACACCATATACTATCGTCCCGTGGAGGAGGAGGCATCAGCTGC------------AGCCCCGGCCTCC---TCTAGCAGCAGCTCGTGCA------------GCAGCAGTGCCCAGAAGCACCA
droPer2	scaffold_3:4958931-4959104 +		GCTGGTCAACGAGCAGCCGGAGACTGACAACGAGTCGGAGACGCTGCTGG----------------------------------------------------------------------------------------------------------GCAACGCGAGCATCTGGGTGCAGCAGCACACCATATACTATCGTCCCGTGGAGGAGGAGGCATCAGCTGC------------AGCCCCGGCCTCC---TCTAGCAGCAGCTCATGCA------------GCAGCAGTGCCCAGAAGCACCA
droAna3	scaffold_13340:22835335-22835498 -		GCTGGTCAGTGAACAGCCGGAGACGGACAACGAGTCGGAGACCCTGCTGG----------------------------------------------------------------------------------------------------------GCAATGCCAGTATCTGGGTTCAGCAGCACACTATCTACTATCGGCCCGTGGAGGAGGAGGCCGGTTCGGGAACT---GCC---------GGAGCC---TCTAGCAGCAGTTCGTGCAGCA---------GCAGCGGCG-------------
droBip1	scf7180000396424:1110165-1110335 -		GCTGGTCAGTGAACAGCCGGAGACGGACAACGAGTCGGAGACCCTGCTGG----------------------------------------------------------------------------------------------------------GCAACGCCAGCATCTGGGTGCAGCAGCACACCATTTACTATCGCCCCGTGGAGGAGGAGGCCGCTGCTGGAGCT---GCC---------GGAGCC---TCCAGCAGCAGCTCGTGCAGCA---------GCAGTGGCGTGCAAAA------
droKik1	scf7180000302634:307815-307982 -		GCTGGTCAGTGAGCAGCCGGAAACGGACAATGAGTCAGAGACTCTGTTGG----------------------------------------------------------------------------------------------------------GCAACGCCAGCATATGGGTGCAGCAGCACACGATCTATTATCGTCCGGTCGAGGAGGAGGCTACTCCAGGGGCT---G------------CGGCC---TCCAGCAGCAGTTCGTGCAGCA---------GCAGTGGTGTCCAGAA------
droFic1	scf7180000453903:222054-222227 -		GCTGGTCAGTGAGCAGCCGGAGACCGACAACGAGTCGGAGACCCTGTTGG----------------------------------------------------------------------------------------------------------GCAACGCCAGCATATGGGTGCAGCAGCACACCATCTACTATCGGCCCGTGGAGGAGGAGGTGGCTGCCGGAGCG---GCCGCCGG---GGCAGCC---TCGAGCAGCAGCTCGTGCA------------GCAGTGGCGTGCAGAA------
droEle1	scf7180000491104:2387207-2387386 -		GCTGGTCAGTGAGCAGCCGGAGACGGACAACGAATCGGAGACGCTGTTGG----------------------------------------------------------------------------------------------------------GTAACGCCAGCATTTGGGTGCAACAGCACACCATCTACTATCGTCCCGTTGAGGAGGAAGTCGCTTCGGGAACGGGAGCCGGTGG---AGCAGCCTCCAGCAGCAGCAGTTCGTGCA------------GCAGTGGTGTACAAAA------
droRho1	scf7180000777661:32639-32812 -		GCTGGTCAGTGAGCAGCCTGAGACGGACAACGAATCGGAGACGCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGCATATGGGTGCAGCAGCACACCATTTACTACCGCCCCGTGGAGGAGGAAGTTGCTTCGGGAGCA---ACTGCGGG---AGCAGCC---TCCAGCAGTAGCTCGTGCA------------GCAGTGGCGTACAAAA------
droBia1	scf7180000302411:347223-347396 -		GCTGGTCAGTGAACAGCCAGAGACCGACAACGAGTCGGAGACGCTTTTAG----------------------------------------------------------------------------------------------------------GAAATGCCAGCATATGGGTGCAGCAGCACACCATTTACTATCGCCCCGTGGAGGAGGAAGTTGCCTCGGGAGCG---GCTGCGGG---AGCTGCT---TCCAGCAGCAGCTCGTGTA------------GCAGTGGTGTGCAAAA------
droTak1	scf7180000415261:513994-514167 +		GCTAGTCAGTGAACAGCCGGAGACCGACAACGAGTCGGAGACGCTCTTGG----------------------------------------------------------------------------------------------------------GAAATGCCAGCATATGGGTGCAGCAGCACACCATTTACTACCGCCCCGTAGAGGAGGAAGTTGCTTCGGGAGCG---GCCACGGG---AGCAGCT---TCGAGCAGTAGCTCTTGCA------------GCAGTGGCGTGCAAAA------
droEug1	scf7180000409759:549911-550084 -		TCTGGTCAGTGAGCAACCGGAGACCGACAACGAGTCGGAGACGCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGCATTTGGGTGCAACAGCACACCATCTACTACCGCCCCGTGGAGGAAGAAGTCGCTTCGGGAGGG---GCAGCGGG---AGCAGCT---TCCACCAGCAGCTCGTGTA------------GCAGTGGCGTGCAAAA------
dm3	chr3R:616027-616200 -		ACTGGTCAGTGAACAACCTGAGACGGACAACGAGTCGGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGTATATGGGTGCAGCAGCATACTATTCACTATCGTCCTGTAGAGGAGGAAGTGACTTCGGGAGCG---GCTGCGGG---AGCAGCA---TCCAGCAGCAGTTCGTGTA------------GCAGTGGCGTGCAAAA------
droSim2	3r:550535-550708 -		ACTGGTCAGTGAACAGCCTGAGACGGACAACGAGTCTGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGTATATGGGTGCAGCAGCATACTATTCACTATCGTCCTGTAGAGGAGGAAGTGACTTCGGGAGCG---GCTGCGGG---AGCAGCA---TCCAGCAGCAGTTCGTGTA------------GCAGTGGCGTGCAAAA------
droSec2	scaffold_6:715939-716112 -		ACTGGTCAGTGAACAGCCTGAGACGGACAACGAGTCTGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGTATATGGGTGCAGCAGCATACTATTCACTATCGTCCTGTAGAGGAGGAAGTGACTTCGGGAGCG---GCTGCGGG---AGCAGCA---TCCAGCAGCAGTTCGTGTA------------GCAGTGGCGTGCAAAA------
droYak3	3R:935121-935278 -		GCTGGTCAGTGAACAGCCTGAGACCGACAACGAGTCCGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCCACTATATGGGTTCAGCAACATACTATTTACTATCGTCCTGTGGAGGAGGATATGTCTTCGGGAACA---GCTGCGGG---AGCAGCA---TCCAGCAGCGGTTTGGGTA----------------------------------
droEre2	scaffold_4770:923830-924003 -		GCTGGTCAGTGAACAGCCTGAGACCGACAACGAGTCTGAGACTCTTTTGG----------------------------------------------------------------------------------------------------------GAAACGCCAGTATATGGGTGCAACAGCATACTATTTACTATCGTCCTGTAGAGGAGGAAGTGGCTTCGGGAGCG---GCTGCGGG---AGCAGCA---TCCACCAGCGGTTTGAGTA------------GCAGTGGCGTGCAAAA------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GCTGGTAAACGAGCAGCACGAGACGGACAACGAGTCCGAGATGCTGTTAGGTAAGTGTGCAGCGGGGGGGTAGGAA-ATAATAAAGGATATGGCAACAA-------TTGCTGATACT----------------CATCCAA--------ATTCGCAGGCAACAGCAGCATTTGGGTTCAGCAGCACACCATCTACTATCGTCCCGTCGAGGAGGAGCTGCTTGCCG---------CC------GGCGGTTCT---GGTGCCAACAGCTCTTGCAGCAGCAGCAGCGGCAGTCAGGCCCACAA------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................GACAACGAGTCCGAGATGC.......................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................GTCGAGGAGGAGCTGCTTGCC...................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AGCACACCATCTACTATCGTCC.........................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ATCGTCCCGTCGAGGAGGAGCTGCTT......................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CAACGAGTCCGAGATGCT......................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ACAACGAGTCCGAGATGCTGTTAGG................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GCAGCATTTGGGTTCAGC...............................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................AGCACACCATCTACTATCGTCCC........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GCAGCACGAGACGGACAACGA..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACGGACAACGAGTCCGAGATGCT......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................G---------CC------GGCGGTTCT---GGTGCCAACAGC.........................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TACTATCGTCCCGTCGAGGAGGAGC...........................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GAGTCCGAGATGCTGTTAG.................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................CG---------CC------GGCGGTTCT---GGTGCCAACAGCTCTTG....................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................TGGGTTCAGCAGCACACCATCTACTAA..............................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCTGGTAAACGAGCAGCACGA..............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................AGCAGCATTTGGGTTCAGC...............................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................GTTAGGTAAGTGTGCAGCGGGG................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GAGGAGCTGCTTGCCG---------CC------GGCG.............................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GCAACAGCAGCATTTGGGTTC..................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AACGAGCAGCACGAGACGGAC.......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
........ACGAGCAGCACGAGACGG.........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TACTATCGTCCCGTCGAGGA................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................ACAGCAGCATTTGGGTTCAGCA..............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GGAGCTGCTTGCCG---------CC------GGC..............................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AAACGAGCAGCACGAGACG..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CGTCCCGTCGAGGAGGAGCTGCT.......................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................AGGAGGAGCTGCTTGCCG---------CC------GGC..............................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCACGAGACGGACAACGAGTC...............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................TGGGTTCAGCAGCACACCA......................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CAGCAGCACACCATCTACTATC.............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATCTACTATCGTCCCGTCGAGGAGGA.............................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATCTACTATCGTCCCGTCGAGGAGG..............................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AGCTCTTGCAGCAGCAGCAGCGGC....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGGTAAACGAGCAGCACGA..............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........ACGAGCAGCACGAGACGGACA......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CTTGCAGCAGCAGCAGCGGCAG..................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CTTGCAGCAGCAGCAGCGGCA...................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TTGCAGCAGCAGCAGCGGCA...................	20	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TGCAGCAGCAGCAGCGGCA...................	19	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

GCTAGTCAACGAGCAGCACGAGACGGACAACGAGTCCGAGATGCTGCTAGGTAAGT------------------GGAATTAGAAAGAGTCC----TTTAAGCGAGTGG----AT-CTATTTAAG---CTAATCCATCTAA-----TCCATCTGTAGGCAATAGCAGCATTTGGGTGCAGCAGCACACCATCTTCTATCGCCCCGTCGAGGAGGAACTCGCTGGCGGATCT---GG--GCCA---AACAGC----TCCTGCAGCAGTAGCAGCA------------GCAGTCAGGCCCACAA------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................TGGCGGATCT---GG--GCCA---AACAG..........................................................	21	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................GCAGCAGCACACCATCTTCTATCG............................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........................CAACGAGTCCGAGATGCTG.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.......................................................................................GTCC----TTTAAGCGAGTGG----AT-C...............................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................ACGAGACGGACAACGAGTCCGAGATGC.......................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................AGCAGTAGCAGCA------------GCAGTC................	19	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................GG--GCCA---AACAGC----TCCTGCAGCA...........................................	22	1	1.00	1	0	0	0	0	1	0
...........AGCAGCACGAGACGGACT......................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................GCACACCATCTTCTATCGC...........................................................................................................	19	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................GAGGAGGAACTCGCTGGCGG.................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................TAATCCATCTAA-----TCCATCTGT.........................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
......CAACGAGCAGCACGAGACGGA........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................ATCGCCCCGTCGAGGAGGAACT..........................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................GTAAGT------------------GGAATTAGAAAGAGTC.........................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................G--GCCA---AACAGC----TCCTGCAGC............................................	20	1	1.00	1	1	0	0	0	0	0

droGri2

GCTGGTCAACGAGCACAACGAGACGGACAATGAGTCCGAGATGCTGCTGGGTGAGT------------------AC-ATCACAAAGAATGC----ACAA-------TG----AT-TTCATCAAGTAATCAATCCATTTT-TTGAAAATATGAACAGGCAACAGCAGCATTTGGGTGCAACAGCACACCATCTATTATCGTCCTGTGGAGGAGGAGAATG---------------------------TGGCATCCACTGCCAATAGCTCGTGCA------------GCAGCAGCAGTCAGACATACAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................................................................................................................................TGTGGAGGAGGAGAATG---------------------------TG...........................................................	19	1	1.00	1	0	1
.............................................................................................................................................................................................................................................................................................GCAGCAGCAGTCAGACATACA.	21	1	1.00	1	1	0
..........GAGCACAACGAGACGGAC.......................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................CACTGCCAATAGCTCGTGCA------------......................	20	1	1.00	1	0	1
.............CACAACGAGACGGACAATGAGT................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1
.............................................................................................................................................................................................................................................................................................GCAGCAGCAGTCAGACATA...	19	2	0.50	1	0	1
........................................................................................................................................................................................................................................................................GCTCGTGCA------------GCAGCAGCAG............	19	4	0.25	1	1	0

droWil2

TCTTGTTAATGAGCAACCCGAGACTGATAATGAATCGGAGACATTGCTGG----------------------------------------------------------------------------------------------------------GCAATCCTAGCATCTGGGCACAACAACATACCATATACTATAGGCCAGTTGATGAGGAGACTGG---CGGAAAT---ACAGGAGGAGCAGCCACC---TCGAGTACAAGCTCTTGCA------------GTAGCGGTGGAGTTCAACAACA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....GTTAATGAGCAACCCGAGAC...........................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
.........................GATAATGAATCGGAGACAT.......................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0
.........................GATAATGAATCGGAGACATT......................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0
.......................................................................................................................................................................................................................................................................AGCTCTTGCA------------GTAGCGGTGGA...........	21	1	2.00	2	0	0	0	1	1
.........................................................................................................................................................................................................................TGG---CGGAAAT---ACAGGAGGAGC...............................................................	21	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................ATAGGCCAGTTGATGAGGAG............................................................................................	20	1	1.00	1	0	0	0	0	1
..............................................................................................................................................................................................ATACTATAGGCCAGTTGATG.................................................................................................	20	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................CCAGTTGATGAGGAGACT.........................................................................................	18	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................CAACATACCATATACTATAGGCC.........................................................................................................	23	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................................................CGGAAAT---ACAGGAGGAGC...............................................................	18	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................AAT---ACAGGAGGAGCAGCCACC---TCGA.................................................	25	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................AGCCACC---TCGAGTACAAGCTCTTGCA------------G.....................	27	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................TGGGCACAACAACATACCATAT...................................................................................................................	22	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................AAAT---ACAGGAGGAGCAGCCAC.........................................................	21	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................AACAACATACCATATACTATAGGCCA........................................................................................................	26	1	1.00	1	0	0	0	1	0
.....TTAATGAGCAACCCGAGACTGATAAT....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...........................TAATGAATCGGAGACATTGCTGG----------------------------------------------------------------------------------------------------------GCAA...................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................TACCATATACTATAGGCCAGTTGA...................................................................................................	24	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................GCTCTTGCA------------GTAGCGGTGGA...........	20	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................AGCGGTGGAGTTCAACAAC.	19	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................GCA------------GTAGCGGTGGAGTTCAACAACA	25	1	1.00	1	0	0	0	1	0
.............................ATGAATCGGAGACATTGCT...................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................GCAGCCACC---TCGAGTACAAGCTC.......................................	23	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................GTACAAGCTCTTGCA------------GTAGCGGTGGA...........	26	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................CAGTTGATGAGGAGACTGG---C...................................................................................	20	1	1.00	1	0	0	1	0	0
............GCAACCCGAGACTGATAATG...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................AAGCTCTTGCA------------GTAGCGGTGGAGTT........	25	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................GTTGATGAGGAGACTGG---C...................................................................................	18	1	1.00	1	0	0	0	1	0
.........................GATAATGAATCGGAGACATTGCTGG----------------------------------------------------------------------------------------------------------G......................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................GTACAAGCTCTTGCA------------GTAGCGG...............	22	1	1.00	1	0	0	1	0	0

dp5

GCTGGTCAACGAGCAGCCTGAGACCGATAACGAGTCGGAGACGCTGCTGG----------------------------------------------------------------------------------------------------------GCAACGCGAGCATCTGGGTGCAGCAGCACACCATATACTATCGTCCCGTGGAGGAGGAGGCATCAGCTGC------------AGCCCCGGCCTCC---TCTAGCAGCAGCTCGTGCA------------GCAGCAGTGCCCAGAAGCACCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................GCTGG----------------------------------------------------------------------------------------------------------GCAACGCGAGCATCTGG......................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0
.........................GATAACGAGTCGGAGACGCTGCT...................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.......................................................................................................................................................................................ACACCATATACTATCGTCCCGTGGA...................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATATACTATCGTCCCGTGGAGG.................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................CTGG----------------------------------------------------------------------------------------------------------GCAACGCGAGCATCTGG......................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............GCAGCCTGAGACCGATAACGA..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................AACGAGTCGGAGACGCTGCT...................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............AGCCTGAGACCGATAACGA..................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................G----------------------------------------------------------------------------------------------------------GCAACGCGAGCATCTGGGTGCA.................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................AGCAGCTCGTGCA------------GCAGC.................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................CTAGCAGCAGCTCGTGCA------------GC....................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......CAACGAGCAGCCTGAGACC..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................GAGACGCTGCTGG----------------------------------------------------------------------------------------------------------GCAACG.................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................GCTGG----------------------------------------------------------------------------------------------------------GCAACGCGAGCATCTG.......................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................GG----------------------------------------------------------------------------------------------------------GCAACGCGAGCATCTGGGTGCA.................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GTCCCGTGGAGGAGGAGGC..........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................GGAGACGCTGCTGG----------------------------------------------------------------------------------------------------------GCAACG.................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CC---TCTAGCAGCAGCTCGTGCA------------GC....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................GGAGACGCTGCTGG----------------------------------------------------------------------------------------------------------GCAACGCGA..............................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......AACGAGCAGCCTGAGACCGAT.......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................TACTATCGTCCCGTGGAGGA................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCGTGGAGGAGGAGGC..........................................................................................	16	5	0.20	1	0	0	0	0	0	0	0	0	0	1

droPer2

GCTGGTCAACGAGCAGCCGGAGACTGACAACGAGTCGGAGACGCTGCTGG----------------------------------------------------------------------------------------------------------GCAACGCGAGCATCTGGGTGCAGCAGCACACCATATACTATCGTCCCGTGGAGGAGGAGGCATCAGCTGC------------AGCCCCGGCCTCC---TCTAGCAGCAGCTCATGCA------------GCAGCAGTGCCCAGAAGCACCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................AACGAGTCGGAGACGCTGC....................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................ACACCATATACTATCGTCCC........................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................ATACTATCGTCCCGTGGAGGA................................................................................................	21	1	2.00	2	0	0	1	0	0	1
......................................................................................................................................................................................................GTCCCGTGGAGGAGGAGGCA.........................................................................................	20	1	2.00	2	0	0	0	0	0	2
.........................GACAACGAGTCGGAGACGCTGCTGG----------------------------------------------------------------------------------------------------------GC.....................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................AACGCGAGCATCTGGGTGCAGCA..............................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................CTATCGTCCCGTGGAGGAGGA.............................................................................................	21	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................ATACTATCGTCCCGTGGAG..................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................AACGCGAGCATCTGGGTGCA.................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................ATACTATCGTCCCGTGGAC..................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................GACAACGAGTCGGAGACG........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........................GACAACGAGTCGGAGACGCT......................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................GACAACGAGTCGGAGACGCTGCT...................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..........................ACAACGAGTCGGAGACGCT......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................CTGG----------------------------------------------------------------------------------------------------------GCAACGCGAGCATCTG.......................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.....................GACTGACAACGAGTCGGAGACGCT......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................CTGC------------AGCCCCGGCCTCC---TCTAGCAGCA...........................................	27	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................CAACGCGAGCATCTGGGT....................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................GCTGC------------AGCCCCGGCCTCC---TCT..................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................ATCAGCTGC------------AGCCCCGGCCTCC---T....................................................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................ATACTATCGTCCCGTGGAGGAGGA.............................................................................................	24	1	1.00	1	0	0	0	0	0	1
GCTGGTCAACGAGCAGCCGGA..............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0

droAna3

GCTGGTCAGTGAACAGCCGGAGACGGACAACGAGTCGGAGACCCTGCTGG----------------------------------------------------------------------------------------------------------GCAATGCCAGTATCTGGGTTCAGCAGCACACTATCTACTATCGGCCCGTGGAGGAGGAGGCCGGTTCGGGAACT---GCC---------GGAGCC---TCTAGCAGCAGTTCGTGCAGCA---------GCAGCGGCG-------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................CAACGAGTCGGAGACCCTGCT...................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0
....................................................................................................................................................................................................................GAGGCCGGTTCGGGAACT---..........................................................................	18	1	1.00	1	0	1	0	0	0	0
..........GAACAGCCGGAGACGGACAA.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................GAGGAGGCCGGTTCGGGAAC..............................................................................	20	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................AGGAGGCCGGTTCGGGAACT---GC........................................................................	22	1	1.00	1	0	0	0	0	1	0
................................AGTCGGAGACCCTGCTGG----------------------------------------------------------------------------------------------------------GCAATGCC...............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................GGAACT---GCC---------GGAGCC---TCTAG................................................	20	1	1.00	1	1	0	0	0	0	0
...........................CAACGAGTCGGAGACCCTGCTG..................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...................GAGACGGACAACGAGTCGGA............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................GAGCC---TCTAGCAGCAGTTCGTGC...................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AGTTCGTGCAGCA---------GCAGCGGC..............	21	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................AGCAGTTCGTGCAGCA---------GCAGC.................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................GTATCTGGGTTCAGCAGCA...........................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................GGACAACGAGTCGGAGACCCT......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................TGGGTTCAGCAGCACACTA......................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................CTATCGGCCCGTGGAGGAG...............................................................................................	19	1	1.00	1	0	0	1	0	0	0
..............................CGAGTCGGAGACCCTGCTGG----------------------------------------------------------------------------------------------------------GCA....................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droBip1

GCTGGTCAGTGAACAGCCGGAGACGGACAACGAGTCGGAGACCCTGCTGG----------------------------------------------------------------------------------------------------------GCAACGCCAGCATCTGGGTGCAGCAGCACACCATTTACTATCGCCCCGTGGAGGAGGAGGCCGCTGCTGGAGCT---GCC---------GGAGCC---TCCAGCAGCAGCTCGTGCAGCA---------GCAGTGGCGTGCAAAA------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCTGGTCAGTGAGCAGCCGGAAACGGACAATGAGTCAGAGACTCTGTTGG----------------------------------------------------------------------------------------------------------GCAACGCCAGCATATGGGTGCAGCAGCACACGATCTATTATCGTCCGGTCGAGGAGGAGGCTACTCCAGGGGCT---G------------CGGCC---TCCAGCAGCAGTTCGTGCAGCA---------GCAGTGGTGTCCAGAA------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCTGGTCAGTGAGCAGCCGGAGACCGACAACGAGTCGGAGACCCTGTTGG----------------------------------------------------------------------------------------------------------GCAACGCCAGCATATGGGTGCAGCAGCACACCATCTACTATCGGCCCGTGGAGGAGGAGGTGGCTGCCGGAGCG---GCCGCCGG---GGCAGCC---TCGAGCAGCAGCTCGTGCA------------GCAGTGGCGTGCAGAA------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCTGGTCAGTGAGCAGCCGGAGACGGACAACGAATCGGAGACGCTGTTGG----------------------------------------------------------------------------------------------------------GTAACGCCAGCATTTGGGTGCAACAGCACACCATCTACTATCGTCCCGTTGAGGAGGAAGTCGCTTCGGGAACGGGAGCCGGTGG---AGCAGCCTCCAGCAGCAGCAGTTCGTGCA------------GCAGTGGTGTACAAAA------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCTGGTCAGTGAGCAGCCTGAGACGGACAACGAATCGGAGACGCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGCATATGGGTGCAGCAGCACACCATTTACTACCGCCCCGTGGAGGAGGAAGTTGCTTCGGGAGCA---ACTGCGGG---AGCAGCC---TCCAGCAGTAGCTCGTGCA------------GCAGTGGCGTACAAAA------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCTGGTCAGTGAACAGCCAGAGACCGACAACGAGTCGGAGACGCTTTTAG----------------------------------------------------------------------------------------------------------GAAATGCCAGCATATGGGTGCAGCAGCACACCATTTACTATCGCCCCGTGGAGGAGGAAGTTGCCTCGGGAGCG---GCTGCGGG---AGCTGCT---TCCAGCAGCAGCTCGTGTA------------GCAGTGGTGTGCAAAA------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCTAGTCAGTGAACAGCCGGAGACCGACAACGAGTCGGAGACGCTCTTGG----------------------------------------------------------------------------------------------------------GAAATGCCAGCATATGGGTGCAGCAGCACACCATTTACTACCGCCCCGTAGAGGAGGAAGTTGCTTCGGGAGCG---GCCACGGG---AGCAGCT---TCGAGCAGTAGCTCTTGCA------------GCAGTGGCGTGCAAAA------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCTGGTCAGTGAGCAACCGGAGACCGACAACGAGTCGGAGACGCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGCATTTGGGTGCAACAGCACACCATCTACTACCGCCCCGTGGAGGAAGAAGTCGCTTCGGGAGGG---GCAGCGGG---AGCAGCT---TCCACCAGCAGCTCGTGTA------------GCAGTGGCGTGCAAAA------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACTGGTCAGTGAACAACCTGAGACGGACAACGAGTCGGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGTATATGGGTGCAGCAGCATACTATTCACTATCGTCCTGTAGAGGAGGAAGTGACTTCGGGAGCG---GCTGCGGG---AGCAGCA---TCCAGCAGCAGTTCGTGTA------------GCAGTGGCGTGCAAAA------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................GACAACGAGTCGGAGACTCTT.....................................................................................................................................................................................................................................................................	21	1	60.00	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	14	5	19	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GACAACGAGTCGGAGACTCT......................................................................................................................................................................................................................................................................	20	1	34.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	5	2	8	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CGGACAACGAGTCGGAGACTCTT.....................................................................................................................................................................................................................................................................	23	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CGGACAACGAGTCGGAGACTCT......................................................................................................................................................................................................................................................................	22	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GACAACGAGTCGGAGACTCTTT....................................................................................................................................................................................................................................................................	22	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	7	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................ACGAGTCGGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGC................................................................................................................................................	28	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GACAACGAGTCGGAGACTC.......................................................................................................................................................................................................................................................................	19	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................CTTCGGGAGCG---GCTGCGGG---AGCAGC.........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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ACTGGTCAGTGAACAACCTGAGACGGA........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................TAGAGGAGGAAGTGACTTCGGGAGCG---GC........................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................AGCA---TCCAGCAGCAGTTCGTGTA------------GC....................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TACTATTCACTATCGTCCTGTA.....................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TCCAGCAGCAGTTCGTGTA------------G.....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GCATACTATTCACTATCGTCCATC......................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ACAACGAGTCGGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAA...................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GCAGCAGTTCGTGTA------------GCAGTG................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTATCGTCCTGTAGAGGAG...............................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................CCTGAGACGGACAACGAGTCGGAGA..........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACTGGTCAGTGAACAGCCTGAGACGGACAACGAGTCTGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGTATATGGGTGCAGCAGCATACTATTCACTATCGTCCTGTAGAGGAGGAAGTGACTTCGGGAGCG---GCTGCGGG---AGCAGCA---TCCAGCAGCAGTTCGTGTA------------GCAGTGGCGTGCAAAA------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................TACTATTCACTATCGTCCTGTAGAGGA................................................................................................	27	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..........GAACAGCCTGAGACGGACAAC....................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TTCACTATCGTCCTGTAGAGGAGG..............................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGTGACTTCGGGAGCG---GCTGCG....................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TACTATTCACTATCGTCCTGTAGAGGG................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACGGACAACGAGTCTGAGACT........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ACTTCGGGAGCG---GCTGCGGG---AGCA...........................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................CTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGTATATGG......................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTGAGACGGACAACGAGTCTGAGACTC.......................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACAGCCTGAGACGGACAAC....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCCTGTAGAGGAGGAAGTGACTTCGG..................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................GTCTGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCC...............................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGTATATGGGT....................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..TGGTCAGTGAACAGCCTGAGACGGACAACGA..................................................................................................................................................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......AGTGAACAGCCTGAGACGGACAACGAGT................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CTGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGT............................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGGTCAGTGAACAGCCTGAGACGGAC.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................ACGGACAACGAGTCTGAGACTCTT.....................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CCTGAGACGGACAACGAGTCTGAGAC.........................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATTCACTATCGTCCTGTAGA...................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GGTCAGTGAACAGCCTGAGAC...........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGTATATGGGTGCAG................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............AGCCTGAGACGGACAACGAGTCTGAGAC.........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TTCACTATCGTCCTGTAGAGGAGGA.............................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................ATACTATTCACTATCGTC..........................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GTGAACAGCCTGAGACGGA........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......AGTGAACAGCCTGAGACGGAC.......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TGAACAGCCTGAGACGGACAA.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACAGCCTGAGACGGACAACGAGTCTGAGA..........................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AACAGCCTGAGACGGACAACG...................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTGAGACGGACAACGAGTCTGAGACTCTT.....................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGT............................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GGTCAGTGAACAGCCTGAGACGGACAAC....................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TTCACTATCGTCCTGTAGAGGAGGAAG...........................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCCTGAGACGGACAACGAGT................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CTGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCT...............................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AGACGGACAACGAGTCTGAGACT........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................A---TCCAGCAGCAGTTCGTGTA------------GC....................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........GTGAACAGCCTGAGACGGACAACGAGT................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTATCGTCCTGTAGAGGAGGAAG...........................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AGCCTGAGACGGACAACGAGTCTGAGACT........................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAACAGCCTGAGACGGACAACGA..................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TAG----------------------------------------------------------------------------------------------------------GAAACGCTAGTATATGGGTGCAGC...............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GACTTCGGGAGCG---GCTGCGGG---AGCAGC.........................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CGGACAACGAGTCTGAGACTCT......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAACAGCCTGAGACGGAC.......................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCCTGAGACGGACAACGAGTCTGAGACT........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ACTGGTCAGTGAACAGCCTGAGACGGACAACGAGTCTGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGTATATGGGTGCAGCAGCATACTATTCACTATCGTCCTGTAGAGGAGGAAGTGACTTCGGGAGCG---GCTGCGGG---AGCAGCA---TCCAGCAGCAGTTCGTGTA------------GCAGTGGCGTGCAAAA------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................CTGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGT............................................................................................................................................	26	1	2.00	2	0	0	2	0
...............................................................................................................................................................................................CACTATCGTCCTGTAGAGGAGGAAGT..........................................................................................	26	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................GACTTCGGGAGCG---GCTGC.....................................................................	18	1	1.00	1	0	0	1	0
..TGGTCAGTGAACAGCCTGAGACGGG........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1
.......................................................................................................................................................................................................................................................................AGTTCGTGTA------------GCAGTGGCGT............	20	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................GACTTCGGGAGCG---GCTGCGGG---AGCAGC.........................................................	27	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................AGTGACTTCGGGAGCG---GCT.......................................................................	19	1	1.00	1	0	0	0	1
...........................................CTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCTAGT............................................................................................................................................	18	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................ATACTATTCACTATCGTCCTGTAGAGGA................................................................................................	28	1	1.00	1	1	0	0	0
..........GAACAGCCTGAGACGGACAACGAGT................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
........GTGAACAGCCTGAGACGGACAACGAG.................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
.............................................................................................................................................................AAACGCTAGTATATGGGTGCA.................................................................................................................................	21	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................GCA---TCCAGCAGCAGTTCGT.....................................	19	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................CAGCAGCAGTTCGTGTA------------GCAGT.................	22	1	1.00	1	0	1	0	0
.....................................................................................................................................................................GTATATGGGTGCAGCAGC............................................................................................................................	18	1	1.00	1	0	0	1	0
.................................................................................................................................................................................AGCAGCATACTATTCACTATCGTC..........................................................................................................	24	1	1.00	1	0	0	1	0
...................................................................................................................................................................TAGTATATGGGTGCAGCA..............................................................................................................................	18	1	1.00	1	0	0	0	1
.....................................................................................................................................................................................................................................................................GCAGTTCGTGTA------------GCAGTGGC..............	20	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................ATACTATTCACTATCGTCCTGTAGA...................................................................................................	25	1	1.00	1	0	1	0	0
............ACAGCCTGAGACGGACAACGAGT................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0

droYak3

GCTGGTCAGTGAACAGCCTGAGACCGACAACGAGTCCGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCCACTATATGGGTTCAGCAACATACTATTTACTATCGTCCTGTGGAGGAGGATATGTCTTCGGGAACA---GCTGCGGG---AGCAGCA---TCCAGCAGCGGTTTGGGTA----------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................G---AGCAGCA---TCCAGCAGCGGT.........................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................CTCTTTTAG----------------------------------------------------------------------------------------------------------GAAACGCCACT............................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CTATTTACTATCGTCCTGTGGAGGAGG..............................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................AGCA---TCCAGCAGCGGTTTGGGTA----------------------------------	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................GTCCGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GA.....................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........GAACAGCCTGAGACCGACAACA...................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................TTAG----------------------------------------------------------------------------------------------------------GAAACGCCACTATATGGGT....................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CTATTTACTATCGTCCTGTGGAGGAG...............................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................CTATCGTCCTGTGGAGGAGGATATGTCT......................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTACTATCGTCCTGTGGAGGAGGA.............................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.................................GTCCGAGACTCTTTTAG----------------------------------------------------------------------------------------------------------GAAA...................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..TGGTCAGTGAACAGCCTGAGACCGA........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............AGCCTGAGACCGACAACGA..................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GATATGTCTTCGGGAACA---GCT.......................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GCTGGTCAGTGAACAGCCTGAGACCGACAACGAGTCTGAGACTCTTTTGG----------------------------------------------------------------------------------------------------------GAAACGCCAGTATATGGGTGCAACAGCATACTATTTACTATCGTCCTGTAGAGGAGGAAGTGGCTTCGGGAGCG---GCTGCGGG---AGCAGCA---TCCACCAGCGGTTTGAGTA------------GCAGTGGCGTGCAAAA------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................A---TCCACCAGCGGTTTGAGT...................................	19	1	4.00	4	0	0	0	0	4	0	0
...................................................................................................................................................................................................ATCGTCCTGTAGAGGAGGAAGT..........................................................................................	22	1	3.00	3	0	0	0	0	0	0	3
..........................................................................................................................................................................................................................................................A---TCCACCAGCGGTTTGAGTA------------GC....................	22	1	2.00	2	0	0	0	0	2	0	0
.......................................................................................................................................................................................................................................................................GGTTTGAGTA------------GCAGTGGCGT............	20	1	2.00	2	0	0	0	0	2	0	0
....................................................................................................................................................................................................................................................................AGCGGTTTGAGTA------------GCAGTGGC..............	21	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................ACTATCGTCCTGTAGAGGAG...............................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................AGCATACTATTTACTATCGTCCT........................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..........GAACAGCCTGAGACCGACAACG...................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............ACAGCCTGAGACCGACAAC....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...........................................CTTTTGG----------------------------------------------------------------------------------------------------------GAAACGCCAGTATATGGGTG...................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................CAGTATATGGGTGCAACA..............................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.................................GTCTGAGACTCTTTTGG----------------------------------------------------------------------------------------------------------GAAACGCCAGT............................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................A---TCCACCAGCGGTTTGAGTA------------......................	20	1	1.00	1	0	0	0	0	1	0	0
............ACAGCCTGAGACCGACAACGA..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................CCTGTAGAGGAGGAAGTGGC.......................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................TCCACCAGCGGTTTGAGT...................................	18	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................TGTAGAGGAGGAAGTGGCTT.....................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......CAGTGAACAGCCTGAGACCG.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................GCAGCA---TCCACCAGCGGTT........................................	19	1	1.00	1	0	0	0	0	1	0	0
.........................GACAACGAGTCTGAGACTCTTTTGG----------------------------------------------------------------------------------------------------------GA.....................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GCA---TCCACCAGCGGTTTG......................................	18	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................TTCGGGAGCG---GCTGCGGG---AGCAGC.........................................................	24	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................AGTATATGGGTGCAACAGCATACTATTTA..................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................CA---TCCACCAGCGGTTTGAGT...................................	20	1	1.00	1	0	0	0	0	1	0	0
............ACAGCCTGAGACCGACAACGAGTCTGAG...........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................A---TCCACCAGCGGTTTGAGTA------------G.....................	21	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ACCAGCGGTTTGAGTA------------GCAGT.................	21	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................AGAGGAGGAAGTGGCTTCGGGA................................................................................	22	1	1.00	1	0	0	0	0	0	1	0

CGACCATTTGCTCGTCGTGCTCTGCCTGTTGCTCAGGCTCTACGACAATCCATTCACACGTCGCCCCCCCATCCTTTATTATTTCCTATACCGTTGTTAACGACTATGAGTAGGTTTAAGCGTCCGTTGTCGTCGTAAACCCAAGTCGTCGTGTGGTAGATGATAGCAGGGCAGCTCCTCCTCGACGAACGGCGGCCGCCAAGACCACGGTTGTCGAGAACGTCGTCGTCGTCGCCGTCAGTCCGGGTGTT *********************************************************..........(((..((((((...((.(((....(((......)))))))).)))))).)))********************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M061 embryo	SRR060687 9_0-2h_embryos_total	V116 male body	V047 embryo	SRR060684 140x9_0-2h_embryos_total	SRR060662 9x160_0-2h_embryos_total	SRR060663 160_0-2h_embryos_total	SRR060664 9_males_carcasses_total	SRR060669 160x9_females_carcasses_total	M027 male body	SRR060655 9x160_testes_total	SRR060658 140_ovaries_total	SRR060685 9xArg_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	SRR060672 9x160_females_carcasses_total	SRR060668 160x9_males_carcasses_total	SRR1106714 embryo_2-4h
.......................................................................................................................................................................................................AAAGCCCAGGGTTGTCGAGA................................	20	3	7	1.29	9	7	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................CAAGCCCAGGGTTGTCGA..................................	18	2	4	1.25	5	0	0	0	1	1	1	0	1	1	0	0	0	0	0	0	0	0
............................................................................................................................CGTTGTCGTGGTGAACCCAA...........................................................................................................	20	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CAAGCCCAGGGTTGTCGATA................................	20	3	5	0.60	3	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................AAAGACCAGGGTTGTCGA..................................	18	2	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
.......................................................................................................................................................................................................AAAGCCCACGGTTGTCGATA................................	20	3	8	0.25	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................AAAGACCAGGGTTGTCGATA................................	20	3	9	0.22	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAAGCCCAGGGTTGTCGA..................................	19	3	15	0.20	3	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CCCAGGGTTGTCGAGAAAG.............................	19	3	16	0.19	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0
...........................................................................................................................TCGTTGTCGTGGTGAACCCAA...........................................................................................................	21	3	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.GACCACTTGCTTGCCGTGC.......................................................................................................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GAAAGACCAGGGTTGTCGA..................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................CTCTAGTTCAGGCTCTACG...............................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................CCAGGGTTGTCGATAA...............................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

dvi_4486

scaffold_12855:8366429-8366579 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads