dvi_4429

Name	Class	Family	Strand
Helitron-1_DVir	RC	Helitron	-
Helitron-1N1_DVir	RC	Helitron	-

Species	Coordinate	ID	Alignment
droVir3	scaffold_12855:7907692-7907942 -	dvi_4429	CGAGCCGGAAAATAGTGATGCAGTTTCCATACAGCTGCATGTACTCAGTGGTAAGACGAA-------CCCAATAAAA---ATG--------------GGTATAAGGGGTACAAAG----------------TATTTG-------TGGAC-TGTCCAACTGTCCAACTGT--TTCCAACTGTCCGTCTGTCCGTATGTATGAACGCAAGGATCTCAGAACCTATAAGAGCTAGAGACTT-------AAATTT-------GGAACGTCTGTCCTCTTA----GTATCCGCGCAGTACGAGTTTGTTTTCGATTATC-------GATAA
droMoj3	scaffold_6473:12003795-12004021 -		AGG---------------------------------------------CGGAAGGAGGCGTGGCAGGCTACCTAATATATATATATATATTTTTGAG------------------TGGAAAGATGAGCT-GAGTC-----AATATAGCCATGT-CATCTGTCAGT----CTGTCCATCTGACCATCTGTCTGTACGTATCAACGCAGAGATCTCGTAAACCACAAAAGCTAGAGTATT------G-AATTT-------TACAGGTATTACTGTGTA----TACCATACGCAGTATGAGCTTAAAATATTTTTCC-------TATAA
droGri2	scaffold_14906:12727085-12727333 +		AAC--TGGGAAAGGGGTATAATGGTCTTGTGCAAATGTATGTAACAGGTAGAAGGAAGCATCTCCGACCACATAAAGTTTATA----TATTCTTG--------------------------------CC-AG-TC-----CGTCTGTTC--GTCCGTCTG--------TTCGTCCGTCCGTTTGTCCGTCTGTCTGTATGAACACGCAGATCTCAGAGACTATAAGAGCTAGAAACTT------CAAATTT-------TGAATTTATGTTCTCGTA----TACTCGGCGCAGATAAAGTTTGCGA-----TATTTTTCATCGATAA
droWil2	scf2_1100000004884:295903-296073 +		AAAA-------------------------------TGTATGTAACAGGCAGAAAGAAGCTTTTCCGACC----------------------------------------------------------------------------GGCCTTGA----------------CCGTCTGTCCGTCCGTCCGTCTGTCCGTATGAACACCTAGATCTCGGAGTCTATAAAGGCTAGAGCTAC------CAAATTT-------GGTATGTAGACTCGCGTA----GTATGTAAAGTGAACAAGTTTAATTTAAATT---------------
dp5	2:18811438-18811581 +		CT-----------------------------------------------------------------------------------------------------------------------------------------------------GTCCGTCTG--------TCCGTCCGTCCGTCTGTCCGTCTGTCCGTCTGTCCGCCTAGATCTCAGAGACTATAAAAGCTAGAGCAAC------CAAATTT-------GGTATCCACACTCCTAAT----ATATCAGACCGAGACGAGTTTGTTTCAAAATTTC-------GACA-
droPer2	scaffold_12:334205-334353 -		CCGT-----------------------------------------------------------------------------------------------------------------------------------------------------CCGTCTGTCCGTCTGTCCATCCGTCCGTCTGTCTGTCCGTCGCTATGAGCGCCTAGTTCTCAGAGACTATGAGAGCTAAAGCAAC------CAAATTT-------GGTATTTACACTCCTGTG----ATATCGCACCTGCACAGGTGTATTTCAAAATATC-------G----
droAna3	scaffold_13045:195409-195575 +		ACAA-----------------------------------------------------------------------AATATTTA----TATTCTTGCT------------------TAGCATCAACATC-------------------------------A--------C--CCATTTCTCTCTGTTCGTCAGTCTGTATGAACGCATGAATCTCAGTGACTATAGAAGATAGAGATAT------AAGATTT-------TGTAATTAGAATCCTATA----TTATCAACGCAGTTGAAGTTTGTTCCAAATTTTT-------GATA-
droBip1	scf7180000396572:966983-967170 -		TAGAA------------------------------------------------AACCAAA-------ACCAATCAAA---ATT--------------ACCAAAGATGGTA----G----------------TATATATAGGATATA-----GACCGACTG--------TCCGTCTGTCGGTCTGTCCGTCCGTCCGTACGAACACATGTATCTGAGAGACTAAAAGAGATATAACTAA------AGGATTT-------AACATGGAGATACCCAGATCCAATACCCACGCAGTTAAAGTTTGTTTT--------------------
droKik1	scf7180000302634:683365-683429 +		CGAGCCGGAAAACAGTGCGGCAGTTTCCATGCAATTGCACGTCCTGAGCGGTAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTCAAT----------------------
droFic1	scf7180000453850:357955-358009 +		TGAGCCGGAAAACAGCGAGGCAGTTTCCATGCAATTGCATGTCCTAAGCGGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491278:309021-309196 -		GTAT---------------------------------------------------------------------AGTTTATATA----AAGTCTTTAC--------CAAG------TCCAAGTCTTGGCC-AAGTC-----CA--------------TCTA--------TCT--ATTTCCGTCTGTCTGTTCGTCTTTATGAACGTCGAGATCTCGGAAACTATAAAATCTATAAACTT------CGGAGTT-------GAAATGCAGATTCTAGTA----ATTTTTTAGCAGCACAAGTTAATTTCCAAT----------------
droRho1	scf7180000778294:20482-20694 +		ACA-------------------------------------------GCTAGAAGGAAGCGATTCCGACCCTATATAGTATATA----TATTCTTGAT------------------CAGGGTCACTAGCC-GAGTC-----GATATAGCCATGTCCGTCTGTCCGT----CTGTCTGTCTGCCCGTCTGTCCGTCCGTATGAACGCTGAGATCTCGGAAACTATAAAAGCTAGAAGATT------GGCATTT-------TGCATGCAGATTCTAGGA----GTTCCTACGCAGCGCAAGTTTGTTT---------------------
droBia1	scf7180000302291:1357351-1357536 -		CGAA---------------------------------------------------------------CCCCATAAAG---ATA--------------AAGAT-------------CAGGATCACTAGCC-GAGTC-----GAT-TAGCCATGTCCGTCTG--------TCCGCCTGTCTGTCTATCTGCCTGTCCGTATAAACGCTGAGATCTCGAAAACTATAAGAGCTAGAAGGAGGAGAGGCAGACTT-------GGCATGCAGATTCGTGGG----CTTCCTGCGCAGCGCAAGTTTGTTT---------------------
droTak1	scf7180000410497:5449-5672 -		AAAAGGG---------GATATTGTATTCGTGCAAATGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAATGTATATA----TATTCTTGAT------------------CCGGGTCACTAGCC-GAGTC-----GATCTAGCCAT----------------------------GTCCGTCTGTCTGTCTGAATGAACGCTGAGATCTCGGAAACTACAAAAGCTAGAAGGTT------GAGATTT-------CCCACACATATTCTTTGG----CTTCCTACGCAGCGCAAGTTTATTTT--------------------
droEug1	scf7180000409445:55530-55724 +		CGTCCTGTTGCATAACTCGGT----------------------------ACTAAA------------ACCTACATGG---ATA--------------AA-----CGGCTAC------CAGTTATTGGGG-AATGC-CAGCAA--TAGC-----------A----ATC--GTGTCCGTCTGTCCGTCCGTCTGTCGGTATGAAAGCTGAGATCTCAGAAAATATAAGAGATAGAAAGAT------GAGATTA-------AGCATGAAGATTCTTGAG----GTCCCTACGCAGCGCAAGTTT-------------------------
dm3	chrX:22196397-22196541 +		G------------------------------------------------------------------------------------------------------------------------------------TC-----GATCTGACCCT--------G--------TCTGTCTATCAGCCTGTCTGACCGTCCGTAAGAGCGTAAAGATCTCAAGAACTATAAAAGCTAGAATGTT------GAGATTA-------AGCATGCAGCTTCCAGAG----TCATAGACGCAGCGCAAGTTTGTTTTCAAACATT-------G----
droSim2	2l:22264512-22264664 -		GT-------------------------------------------------------------------------------------------------------------------------------------------------------CAATCTGTCCGT----TTGTCTACCAGCCTGTCCGTCAGTACATATGAGCGCTGTGATCTCAGAAACTATAAAAACTTGAAAGTT------GAGATTAGGGACGTTTATTGGTGATTCTGGGG----ACGTAGACGCAGCGCAGGTTTGCTTTAAAATATT-------GACA-
droSec2	scaffold_11:2838939-2839113 +		TAAGAGGA---------------------------------------------------------------AGAAAGTATATA----TGTATAAGAT------------------CAGG-CCAATAGCCGGAGTC-----GAT--------------CTG--------T--GCCTGTCCGTCTGTCTGTCCGTCCGTATGAACGTCGAGATCTCAAGACTTGTAAGAGCTATAAGTTT------CAGATTA-------AGCATACAGATTCTAGAA----ACAGAGACGCATCGCCAGTTTGTTTCC-------------------
droYak3	X:4251404-4251586 +		AAAA--------------------------------GTATGTAACAGGCAGAAGGAA---------------------------------------------------------------------------GTC-----GATCTGGCCATGTCCGTCTGTCCAT----CTGTCCATCTGTCCGTCTGTCTGTCCGTATAAACGTCGAGATCTCAGGAACTATAAAAGCTAGAAATTT------GAGCTTA-------AGCATGCACACTCCAGAA----ACATAGACGCAGCGCAAGTTTGTCGATTTATGTT-------G---C
droEre2	scaffold_4690:11055852-11056022 +		ATAAAAG---------------------------------------------------------------TATAAAGTATATA----AAGTA--------------------------------TAGCC-GAGCC-----GA--------------ACCG--------TCCGTCCGTCCGGCTGTCCGTCCGTCCGTATAAACGTCTCGATCTCAGGAACTATAAAAGCTGGAATGTT------GAGATTA-------AGCATGCAGCTTCCAGAG----ACATCGACGCAGCGCAAGTTTGTTTCCGAATGTT-------G----

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CGAGCCGGAAAATAGTGATGCAGTTTCCATACAGCTGCATGTACTCAGTGGTAAGACGAA-------CCCAATAAAA---ATG--------------GGTATAAGGGGTACAAAG----------------TATTTG-------TGGAC-TGTCCAACTGTCCAACTGT--TTCCAACTGTCCGTCTGTCCGTATGTATGAACGCAAGGATCTCAGAACCTATAAGAGCTAGAGACTT-------AAATTT-------GGAACGTCTGTCCTCTTA----GTATCCGCGCAGTACGAGTTTGTTTTCGATTATC-------GATAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................................................TCTTA----GTATCCGCGCAGTACGAGTTT.........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TAGAGACTT-------AAATTT-------GGAACGTCTGTC........................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ATCTCAGAACCTATAAGAGCT................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................ACCTATAAGAGCTAGAGACTT-------.................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCAAGGATCTCAGAACCTATAAGAGC.................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TATGTATGAACGCAAGGATCTC................................................................................................................	22	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AGGATCTCAGAACCTATAAGAGCTAGAG............................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................CCGTATGTATGAACGCAAGGATCTCA...............................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TATGTATGAACGCAAGGATCTCAGA.............................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AAGGATCTCAGAACCTATAAGAGCTA...............................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CTATAAGAGCTAGAGACTT-------.................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATGTATGAACGCAAGGATCTCAGAAC...........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ATCTCAGAACCTATAAGAGCTAGAGA...........................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CCGTATGTATGAACGCAAGG.....................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCTGTCCGTATGTATGAACGCAAGGAT...................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GAACCTATAAGAGCTAGAGACT.........................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGG---------------------------------------------CGGAAGGAGGCGTGGCAGGCTACCTAATATATATATATATATTTTTGAG------------------TGGAAAGATGAGCT-GAGTC-----AATATAGCCATGT-CATCTGTCAGT----CTGTCCATCTGACCATCTGTCTGTACGTATCAACGCAGAGATCTCGTAAACCACAAAAGCTAGAGTATT------G-AATTT-------TACAGGTATTACTGTGTA----TACCATACGCAGTATGAGCTTAAAATATTTTTCC-------TATAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

AAC--TGGGAAAGGGGTATAATGGTCTTGTGCAAATGTATGTAACAGGTAGAAGGAAGCATCTCCGACCACATAAAGTTTATA----TATTCTTG--------------------------------CC-AG-TC-----CGTCTGTTC--GTCCGTCTG--------TTCGTCCGTCCGTTTGTCCGTCTGTCTGTATGAACACGCAGATCTCAGAGACTATAAGAGCTAGAAACTT------CAAATTT-------TGAATTTATGTTCTCGTA----TACTCGGCGCAGATAAAGTTTGCGA-----TATTTTTCATCGATAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AAAA-------------------------------TGTATGTAACAGGCAGAAAGAAGCTTTTCCGACC----------------------------------------------------------------------------GGCCTTGA----------------CCGTCTGTCCGTCCGTCCGTCTGTCCGTATGAACACCTAGATCTCGGAGTCTATAAAGGCTAGAGCTAC------CAAATTT-------GGTATGTAGACTCGCGTA----GTATGTAAAGTGAACAAGTTTAATTTAAATT---------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................ATGAACACCTAGATCTCGGAGT...........................................................................................................	22	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................ATGAACACCTAGATCTCGG..............................................................................................................	19	20	0.10	2	2	0	0	0	0
......................................................................................................................................................TGA----------------CCGTCTGTCCGTCCGT.............................................................................................................................................	19	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................GTCCGTCCGTCCGTCTGT.....................................................................................................................................	18	20	0.05	1	0	0	0	1	0

dp5

CT-----------------------------------------------------------------------------------------------------------------------------------------------------GTCCGTCTG--------TCCGTCCGTCCGTCTGTCCGTCTGTCCGTCTGTCCGCCTAGATCTCAGAGACTATAAAAGCTAGAGCAAC------CAAATTT-------GGTATCCACACTCCTAAT----ATATCAGACCGAGACGAGTTTGTTTCAAAATTTC-------GACA-	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................GAGACTATAAAAGCTAGAGCAAC------..................................................................................	23	20	6.65	133	0	133	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GAGACTATAAAAGCTAGAGCAAC------CAAATT............................................................................	29	20	4.75	95	0	71	24	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CAAATTT-------GGTATCCACACTCC......................................................	21	20	1.30	26	0	26	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GAGACTATAAAAGCTAGAGCAAC------CA................................................................................	25	20	1.00	20	0	0	0	0	2	0	0	18	0	0
.....................................................................................................................................................................................................................CAGAGACTATAAAAGCTAGAGCAAC------CA................................................................................	27	20	0.85	17	0	15	2	0	0	0	0	0	0	0
.T-----------------------------------------------------------------------------------------------------------------------------------------------------GTCCGTCTG--------TCCGTCCGTCC...................................................................................................................................................	21	20	0.70	14	0	0	0	0	0	0	14	0	0	0
.................................................................................................................................................................................................................ATCTCAGAGACTATAAAAGCT................................................................................................	21	20	0.60	12	0	12	0	0	0	0	0	0	0	0
........................................................................................................................................................................TCCGTCCGTCCGTCTGTCCG..........................................................................................................................................	20	20	0.55	11	0	11	0	0	0	0	0	0	0	0
...........................................................................................................................................................GTCTG--------TCCGTCCGTCCGTCTG..............................................................................................................................................	21	20	0.50	10	0	10	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GAGACTATAAAAGCTAGAGCAAC------CAAAA.............................................................................	28	20	0.45	9	0	9	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCCGTCTGTCCGTCTGTCCGTCTG..............................................................................................................................	24	20	0.45	9	0	9	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ATCTCAGAGACTATAAAAGCTA...............................................................................................	22	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAGAGACTATAAAAGCTAGAGCAAC------CAA...............................................................................	28	20	0.40	8	0	6	0	0	0	0	0	2	0	0
..................................................................................................................................................................................CGTCTGTCCGTCTGTCCGTC................................................................................................................................	20	20	0.30	6	0	0	0	0	0	0	6	0	0	0
.....................................................................................................................................................................................CTGTCCGTCTGTCCGTCTGTC............................................................................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.T-----------------------------------------------------------------------------------------------------------------------------------------------------GTCCGTCTG--------TCCGTCCGTCCG..................................................................................................................................................	22	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAATTT-------GGTATCCACACTC.......................................................	19	20	0.25	5	0	5	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TCAGACCGAGACGAGTTTGTTTCAAAAT...............	28	20	0.25	5	0	3	0	0	0	0	2	0	0	0
........................................................................................................................................................................................................................AGACTATAAAAGCTAGAGCA..........................................................................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................................................................TCTG--------TCCGTCCGTCCGTCTGTC............................................................................................................................................	22	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AGCTAGAGCAAC------CAAATTT-------GGTATC..............................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................................................................................TCCGTCCGTCTGTCCGTCTGTCCG..................................................................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ATCTCAGAGACTATAAAAGCTAGAGC...........................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	3	0	0
...............................................................................................................................................................................................................................................................................................ACCGAGACGAGTTTGTTTCAAAATT..............	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCCGTCTGTCCGTCTGTCCGTCT...............................................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGAGACTATAAAAGCTAGAGCAAC------CAA...............................................................................	27	20	0.15	3	0	0	0	0	0	0	0	3	0	0
......................................................................................................................................................................................................................AGAGACTATAAAAGCTAGAGCAAC------C.................................................................................	25	20	0.15	3	0	0	3	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TAAAAGCTAGAGCAAC------CAAATTT-------....................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................CTG--------TCCGTCCGTCCGTCTGT.............................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	3	0	0
...........................................................................................................................................................GTCTG--------TCCGTCCGTCCGTCT...............................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................TCCGTCTG--------TCCGTCCGTCCGTCT...............................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGACTATAAAAGCTAGAGCAAC------CAAATT............................................................................	28	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCCGTCTGTCCGTCTGTCCGTCTGTC............................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CGCCTAGATCTCAGAGACTA........................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GTCCGTCCGTCTGTCCGTCTGTC....................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................TAAT----ATATCAGACCGAGACGAG............................	22	20	0.10	2	0	1	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................GAGACTATAAAAGCTAGAGCAAC------CAAATTT-------....................................................................	30	20	0.10	2	0	0	0	0	0	0	0	0	2	0
........................................................................................................................................................................................................................AGACTATAAAAGCTAGAGC...........................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.............................................................................................................................................................................................................................................................................TCCTAAT----ATATCAGACCGAGACG..............................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CTAGAGCAAC------CAAATTT-------GGTATCC.............................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CCTAGATCTCAGAGACTATAAAAGC.................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................TCTG--------TCCGTCCGTCCGTCTGTCCG..........................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GAGCAAC------CAAATTT-------GGTATCCACACTCC......................................................	28	20	0.10	2	0	0	2	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TCTCAGAGACTATAAAAGCTAG..............................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAATTT-------GGTATCCACACTCC......................................................	20	20	0.10	2	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TAAT----ATATCAGACCGAGACGAGT...........................	23	20	0.10	2	0	1	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................TCAGACCGAGACGAGTTTGTTTCAAAAA...............	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TAAT----ATATCAGACCGAGACGAGTT..........................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TCAGACCGAGACGAGTTTGTTTCAAAA................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TCAGACCGAGACGAGTTTGTTTCAAA.................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TATCAGACCGAGACGAGTTTG........................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................CCTAAT----ATATCAGACCGAGA................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................CGAGTTTGTTTCAAAATTTC-------G....	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TCAGACCGAGACGAGTTTGTT......................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................TCAGACCGAGACGAGTTTGTTT.....................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................CAGACCGAGACGAGTTTGTTTCAA..................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CTAAT----ATATCAGACCGAGAC...............................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................CCTAGATCTCAGAGACTATA......................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................T----ATATCAGACCGAGACGAGTT..........................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................T-------GGTATCCACACTCCTAAT----ATATCAGT......................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................CTAGATCTCAGAGACTATAAAAG..................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................CCTAGATCTCAGAGACTATAAAAG..................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................AGACGAGTTTGTTTCAAAATT..............	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGAGACTATAAAAGCTAGAGC...........................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................GTCCGTCTGTCCGTCTGT.............................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TCCGTCCGTCTGTCCGTCTG......................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................TATCCACACTCCTAAT----ATATCAGACC....................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CCGTCCGTCTGTCCGTCTGTCCGTC................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AAGCTAGAGCAAC------CAAATTT-------GGTA................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTCCGTCTGTCCGTCTGTCCG..........................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................TAAT----ATATCAGACCGAGACGA.............................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................AAAAGCTAGAGCAAC------CAAATTT-------GG..................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CTAAT----ATATCAGACCGAGA................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................TCAGACCGAGACGAGTTTGTTTCA...................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................AGCAAC------CAAATTT-------GGTATCCACACT........................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................AT----ATATCAGACCGAGACGAGT...........................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ATCAGACCGAGACGAGTTTGTTTCAAAAT...............	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TCCTAAT----ATATCAGACCGAGACGAG............................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................TCCGTCCGTCCGTCTGTCCGT.........................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAGAGACTATAAAAGCTAGAGCAAC------C.................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................TCCGTCTGTCCGTCTGTCCGTCTGTCCG..........................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TCAGACCGAGACGAGTTTGTTTCAAAATT..............	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGAGACTATAAAAGCTAGAGCAAC------..................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................TCAGAGACTATAAAAGCT................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AGTTTGTTTCAAAATTTC-------G....	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................CCGTCCGTCCGTCTGTCCGTCTGT.....................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GACTATAAAAGCTAGAGC...........................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TCAGACCGAGACGAGTTTGTTTC....................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CTAGAGCAAC------CAAATTT-------GGTATCCACAC.........................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TAAT----ATATCAGACCGAGACG..............................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................TCAGACCGAGACGAGTTTGTTTCAA..................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................C------CAAATTT-------GGTATCCACACTCC......................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................GTCCGTCTG--------TCCGTCCGTCCGTCTG..............................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AAGCTAGAGCAAC------CAAATTT-------GG..................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCCTAGATCTCAGAGACTAT.......................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TAAAAGCTAGAGCAAC------CAAAT.............................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CTATAAAAGCTAGAGCAAC------C.................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GCTAGAGCAAC------CAAATTT-------GGTA................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................TTT-------GGTATCCACACTCCTAAT----A.............................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GTCTGTCCGTCTGTCCGTC................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

CCGT-----------------------------------------------------------------------------------------------------------------------------------------------------CCGTCTGTCCGTCTGTCCATCCGTCCGTCTGTCTGTCCGTCGCTATGAGCGCCTAGTTCTCAGAGACTATGAGAGCTAAAGCAAC------CAAATTT-------GGTATTTACACTCCTGTG----ATATCGCACCTGCACAGGTGTATTTCAAAATATC-------G----	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

ACAA-----------------------------------------------------------------------AATATTTA----TATTCTTGCT------------------TAGCATCAACATC-------------------------------A--------C--CCATTTCTCTCTGTTCGTCAGTCTGTATGAACGCATGAATCTCAGTGACTATAGAAGATAGAGATAT------AAGATTT-------TGTAATTAGAATCCTATA----TTATCAACGCAGTTGAAGTTTGTTCCAAATTTTT-------GATA-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TAGAA------------------------------------------------AACCAAA-------ACCAATCAAA---ATT--------------ACCAAAGATGGTA----G----------------TATATATAGGATATA-----GACCGACTG--------TCCGTCTGTCGGTCTGTCCGTCCGTCCGTACGAACACATGTATCTGAGAGACTAAAAGAGATATAACTAA------AGGATTT-------AACATGGAGATACCCAGATCCAATACCCACGCAGTTAAAGTTTGTTTT--------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGAGCCGGAAAACAGTGCGGCAGTTTCCATGCAATTGCACGTCCTGAGCGGTAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTCAAT----------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGAGCCGGAAAACAGCGAGGCAGTTTCCATGCAATTGCATGTCCTAAGCGGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTAT---------------------------------------------------------------------AGTTTATATA----AAGTCTTTAC--------CAAG------TCCAAGTCTTGGCC-AAGTC-----CA--------------TCTA--------TCT--ATTTCCGTCTGTCTGTTCGTCTTTATGAACGTCGAGATCTCGGAAACTATAAAATCTATAAACTT------CGGAGTT-------GAAATGCAGATTCTAGTA----ATTTTTTAGCAGCACAAGTTAATTTCCAAT----------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACA-------------------------------------------GCTAGAAGGAAGCGATTCCGACCCTATATAGTATATA----TATTCTTGAT------------------CAGGGTCACTAGCC-GAGTC-----GATATAGCCATGTCCGTCTGTCCGT----CTGTCTGTCTGCCCGTCTGTCCGTCCGTATGAACGCTGAGATCTCGGAAACTATAAAAGCTAGAAGATT------GGCATTT-------TGCATGCAGATTCTAGGA----GTTCCTACGCAGCGCAAGTTTGTTT---------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGAA---------------------------------------------------------------CCCCATAAAG---ATA--------------AAGAT-------------CAGGATCACTAGCC-GAGTC-----GAT-TAGCCATGTCCGTCTG--------TCCGCCTGTCTGTCTATCTGCCTGTCCGTATAAACGCTGAGATCTCGAAAACTATAAGAGCTAGAAGGAGGAGAGGCAGACTT-------GGCATGCAGATTCGTGGG----CTTCCTGCGCAGCGCAAGTTTGTTT---------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAAGGG---------GATATTGTATTCGTGCAAATGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAATGTATATA----TATTCTTGAT------------------CCGGGTCACTAGCC-GAGTC-----GATCTAGCCAT----------------------------GTCCGTCTGTCTGTCTGAATGAACGCTGAGATCTCGGAAACTACAAAAGCTAGAAGGTT------GAGATTT-------CCCACACATATTCTTTGG----CTTCCTACGCAGCGCAAGTTTATTTT--------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CGTCCTGTTGCATAACTCGGT----------------------------ACTAAA------------ACCTACATGG---ATA--------------AA-----CGGCTAC------CAGTTATTGGGG-AATGC-CAGCAA--TAGC-----------A----ATC--GTGTCCGTCTGTCCGTCCGTCTGTCGGTATGAAAGCTGAGATCTCAGAAAATATAAGAGATAGAAAGAT------GAGATTA-------AGCATGAAGATTCTTGAG----GTCCCTACGCAGCGCAAGTTT-------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

G------------------------------------------------------------------------------------------------------------------------------------TC-----GATCTGACCCT--------G--------TCTGTCTATCAGCCTGTCTGACCGTCCGTAAGAGCGTAAAGATCTCAAGAACTATAAAAGCTAGAATGTT------GAGATTA-------AGCATGCAGCTTCCAGAG----TCATAGACGCAGCGCAAGTTTGTTTTCAAACATT-------G----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................AACTATAAAAGCTAGAATGTT------GAGAT.............................................................................	26	11	12.82	141	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	2	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	3	19	0	25	5	23	11	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AACTATAAAAGCTAGAATGTT------GAGA..............................................................................	25	11	5.09	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	1	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	15	2	3	4	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AACTATAAAAGCTAGAATGTT------GAG...............................................................................	24	11	4.82	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	1	4	0	4	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	6	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TGTCTATCAGCCTGTCTGACCGTCCG..................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AACTATAAAAGCTAGAATGTT------GA................................................................................	23	12	3.42	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	4	1	0	0	4	0	5	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TGTT------GAGATTA-------AGCATGCAGC..........................................................	21	4	3.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TGTT------GAGATTA-------AGCATGCAGCTTC.......................................................	24	3	3.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TCTATCAGCCTGTCTGACCGTCCGT.................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................TGTT------GAGATTA-------AGCATGCAGCT.........................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................CTATAAAAGCTAGAATGTT------G.................................................................................	20	18	0.22	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................CTAGAATGTT------GAGATTA-------AGC.................................................................	20	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GCTAGAATGTT------GAGATTA-------AGC.................................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................TATAAAAGCTAGAATGTT------GACC..............................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ATAGACGCAGCGCAAGTTT.........................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ATAGACGCAGCGCAAGTTTG........................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TT------GAGATTA-------AGCATGCC............................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ATAGACGCAGCGCAAGTTTGG.......................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AGACGCAGCGCAAGTTTGTT......................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CATAGACGCAGCGCAAGTTT.........................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GT-------------------------------------------------------------------------------------------------------------------------------------------------------CAATCTGTCCGT----TTGTCTACCAGCCTGTCCGTCAGTACATATGAGCGCTGTGATCTCAGAAACTATAAAAACTTGAAAGTT------GAGATTAGGGACGTTTATTGGTGATTCTGGGG----ACGTAGACGCAGCGCAGGTTTGCTTTAAAATATT-------GACA-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................CGCTGTGATCTCAGAAACTATAAAAA..................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GATCTCAGAAACTATAAAAAC.................................................................................................	21	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TGGGG----ACGTAGACGCAGCGCAGGTT..........................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTGGTGATTCTGGGG----ACGTA.........................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AGACGCAGCGCAGGTTTG........................	18	6	0.33	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................ATTCTGGGG----ACGTAGCT......................................	17	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TAAGAGGA---------------------------------------------------------------AGAAAGTATATA----TGTATAAGAT------------------CAGG-CCAATAGCCGGAGTC-----GAT--------------CTG--------T--GCCTGTCCGTCTGTCTGTCCGTCCGTATGAACGTCGAGATCTCAAGACTTGTAAGAGCTATAAGTTT------CAGATTA-------AGCATACAGATTCTAGAA----ACAGAGACGCATCGCCAGTTTGTTTCC-------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AAAA--------------------------------GTATGTAACAGGCAGAAGGAA---------------------------------------------------------------------------GTC-----GATCTGGCCATGTCCGTCTGTCCAT----CTGTCCATCTGTCCGTCTGTCTGTCCGTATAAACGTCGAGATCTCAGGAACTATAAAAGCTAGAAATTT------GAGCTTA-------AGCATGCACACTCCAGAA----ACATAGACGCAGCGCAAGTTTGTCGATTTATGTT-------G---C	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................TCCGTATAAACGTCGAGATCTCAGG.............................................................................................................	25	20	0.35	7	0	1	0	0	0	0	0	0	0	0	6
.......................................................................................................................................................................................................AAACGTCGAGATCTCAGGAAC..........................................................................................................	21	20	0.15	3	3	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CCATCTGTCCGTCTGTCTGTCCGT.................................................................................................................................	24	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TCCATCTGTCCGTCTGTCTGTCCGT.................................................................................................................................	25	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CATCTGTCCGTCTGTCTGTCCG..................................................................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TCCGTATAAACGTCGAGATCTCAGGAA...........................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAGAA............................................................................................	26	20	0.10	2	0	1	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................GAGATCTCAGGAACTATAAAAGC.................................................................................................	23	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CATCTGTCCGTCTGTCTG......................................................................................................................................	18	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TCCATCTGTCCGTCTGTCTG......................................................................................................................................	20	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CATCTGTCCGTCTGTCTGTC....................................................................................................................................	20	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TCCAGAA----ACATAGACGCAGCGCAAG............................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................ATAAACGTCGAGATCTCAGGA............................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..AA--------------------------------GTATGTAACAGGCAGAAGGAA---------------------------------------------------------------------------GT................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAGGAACTATAAAAGCTAGAAA...........................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................AGACGCAGCGCAAGTTTGT.......................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CCGTATAAACGTCGAGATCTCAGGAA...........................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TAAACGTCGAGATCTCAGGAACT.........................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GAGATCTCAGGAACTATAAAAGCTAGAAA...........................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................AGCGCAAGTTTGTCGATTTATGTT-------.....	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCTGTCTGTCCGTATAAACGT.........................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TAAACGTCGAGATCTCAGGAACTA........................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

ATAAAAG---------------------------------------------------------------TATAAAGTATATA----AAGTA--------------------------------TAGCC-GAGCC-----GA--------------ACCG--------TCCGTCCGTCCGGCTGTCCGTCCGTCCGTATAAACGTCTCGATCTCAGGAACTATAAAAGCTGGAATGTT------GAGATTA-------AGCATGCAGCTTCCAGAG----ACATCGACGCAGCGCAAGTTTGTTTCCGAATGTT-------G----	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_4429

scaffold_12855:7907742-7907892 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-25.3	-25.3	-25.3