ID:

dvi_4399

 Coordinate:

scaffold_12855:7835650-7835800 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.5 -27.4 -27.4

Flybase annnotation

exon [dvir_GLEANR_10902:2]; CDS [Dvir\GJ11017-cds]; intron [Dvir\GJ11017-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCCTGGCCGTCGATACCGAGCAGCGCTCCAAGCTGCTCAACGACAAATACGTGAGTAACAGCATCTTCAATGGCGGGCAGCGGAACGAATTGAGCGACAGTGAAATGGCTCAGTTGGAAGCGCAAATTTTAACAACGGACGCGAACAGGCGACGGGTGGGCAGCTCCAGCTCAGACACCAGCTCAGTCACCAGCACCAGCACAACAGTTATACCCTCACCAGCGGAACCCGCTAATGAGCCTAGCACATCA
****************************************************************************************(((((((....(((...((....(((((((.((((..(((.......((..(((......))).)))))..)).)))))))))))..)))..))))))).........******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060666
160_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 M061
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 V047
embryo
 SRR060671
9x160_males_carcasses_total
 V053
head
 SRR060685
9xArg_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 M027
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR060689
160x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060655
9x160_testes_total
 SRR060670
9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060659
Argentina_testes_total
...........................................................................................................................................................GGGGGCAACTCCATCTCAGA............................................................................ 20 3 5 53.40 267 119 1 24 14 15 13 10 12 12 8 4 5 2 0 7 0 5 3 3 2 3 0 2 0 0 0 1 1 1 0 0 0 0 0
......................................................................................................ACATGGCGCAGTTGGTAGCG................................................................................................................................. 20 3 14 9.36 131 1 82 23 0 0 2 2 3 1 3 0 6 2 0 2 0 0 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................GGGCAACTCCATCTCAGA............................................................................ 18 2 4 6.25 25 11 0 2 2 0 1 2 1 0 0 0 0 0 0 0 0 1 0 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GGGCAACTCCATCTCAGAG........................................................................... 19 3 18 3.28 59 3 9 8 2 4 1 6 8 0 1 0 3 4 0 0 2 0 0 3 0 0 1 2 1 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................AGTGGGCAACTCCATCTCAGA............................................................................ 21 3 2 3.00 6 1 0 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ACATGGCGCAGTTGGTAGCGC................................................................................................................................ 21 3 3 1.67 5 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AGACACCAGCTCAGTCACCAGCAC....................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GTGGGCAACTCCATCTCAGACC.......................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AACAGTTATACCCTCACCAGC............................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GGGCAACTCCAGCTCAGA............................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATTGAGCGACAGTGAAATGGCT............................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GAACCCGCTAATGAGCCTAGCA..... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GTAACAGCATCTTCAATGGCGGG.............................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CAATGGCGGGGAGCGGACC..................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ATAGGCTACGGGTGGGCTGCT...................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GTGGGCAACTCCATCTCAGAG........................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GGGGGGCAACTCCATCTCAGA............................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AATAGCTCAGTTGGTAGAGCAAA............................................................................................................................. 23 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GGCGGAATCCGCTAAGGAGC........... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GGGGGGCAACTCCATCTCAG............................................................................. 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGGAATCCGCTAAGGAGC........... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GAAATAGCTCAGTTGGAAG................................................................................................................................... 19 1 9 0.22 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GAAATGGCTCAGTTGGGAG................................................................................................................................... 19 1 9 0.22 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................AGCAGGGCTCCAAGGTGCACA.................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ACAGTGAGATTGCTCAGT......................................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TGATATGGCTCAGTTGGTA.................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GCGGGCAACTCCATCTCAGA............................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................AGTGGCTCAGTAGGAAGAGC................................................................................................................................ 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATGGCGCAGTTGGTAGCGC................................................................................................................................ 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GGGCAACTCCATCTCAGAGA.......................................................................... 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CACATGGCGCAGTTGGAAGC.................................................................................................................................. 20 3 14 0.14 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GCGCTTCAAGCAGATCAACGA................................................................................................................................................................................................................ 21 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GAAATAGCTCAGTTGGTAGCG................................................................................................................................. 21 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................GAAATGGCTCAGTTGGGA.................................................................................................................................... 18 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................GAAATAGCTCAGTTGGAAGTG................................................................................................................................. 21 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GAAATAGCTCAGTAGGAAG................................................................................................................................... 19 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ACATGGCGCAGTTGGGAGC.................................................................................................................................. 19 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GGCAACTCCATCTCAGAGA.......................................................................... 19 3 20 0.10 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................ACGACAAATATGTGTGTAAGA............................................................................................................................................................................................... 21 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AGGGGGCAACTCCAGCTCAG............................................................................. 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................GAAATAGCTCAGTTGGAGGG.................................................................................................................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GAAATGGCTCATTTGGGA.................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................GACATAGCTCAGTTGGTAGC.................................................................................................................................. 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CGAAACCGAGCGGCGCTAC.............................................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................ACGGCTCAGTTGGTAGAGCA............................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................GAATTGGCTCAGTAGGGAG................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ACATGGCACAGTTGGTAGCG................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCTCAGTTGGTAGAGCAACT............................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................GACAGTGAAACGCCTTAGT......................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GGGGCATCTCCATCTCAGA............................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GATATGGCTCAGTTGGTAGAG................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGGACCGGCAGCTATGGCTCGTCGCGAGGTTCGACGAGTTGCTGTTTATGCACTCATTGTCGTAGAAGTTACCGCCCGTCGCCTTGCTTAACTCGCTGTCACTTTACCGAGTCAACCTTCGCGTTTAAAATTGTTGCCTGCGCTTGTCCGCTGCCCACCCGTCGAGGTCGAGTCTGTGGTCGAGTCAGTGGTCGTGGTCGTGTTGTCAATATGGGAGTGGTCGCCTTGGGCGATTACTCGGATCGTGTAGT
*******************************************************(((((((....(((...((....(((((((.((((..(((.......((..(((......))).)))))..)).)))))))))))..)))..))))))).........**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 V116
male body		 SRR060686
Argx9_0-2h_embryos_total
 M027
male body		 SRR060665
9_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060680
 9xArg_testes_total
..........................................................GTCGTAGAAGTTACCGGGC.............................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0
............................................TTGCTGCACTCATTGTGGTAG.......................................................................................................................................................................................... 21 3 1 1.00 1 0 0 1 0 0 0 0 0
.....CGGCAGCTATGGGTCGTCG................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................TGCTGCACTCATTGTGGTAG.......................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 1 0 0 0 0
..............................TCGAAGAGGTGCTGTTTA........................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................GTCGTGTCGTCAACATGGGG................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0
..............................................GCTGCACTCATTGTGGTAG.......................................................................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 0 1 0
...........................................................................................................................................GCGGTTGTCAGCTGCCCA.............................................................................................. 18 2 8 0.13 1 0 0 0 0 0 0 0 1
....................................................................................................................................................................................CGAGACAGTGGGCGTGATC.................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................AGTCAGTGGGCGGGGTC.................................................... 17 2 16 0.06 1 1 0 0 0 0 0 0 0
..........................................................GTCGTAGTGGTTACTGCCC.............................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:7835600-7835850 + dvi_4399 CCCTGGCCGT------CGATACCGAGCAGCGCTCCAAGCTGCTCAACGACAAATACGTGAGTAACAGCATCTTCAATGGCGGGCAGCGGAACGAATTGAGCGACAGTGAAATGGCTCAGTTGGAAGCGCAAATTTTAACAACGGACGC------------------------GAACAGGCGACGGGTGGGCAGCTCCAGCTCA-----------------------------------G---------------A---------------------------------------------------CACC----------------AGCTCAGTCACCAGCACCAGCACAACAGTTATA------CC-----CTCACCAGC------------GGAACCCGCTAATGAGCC---------------TAGCACATCA
droMoj3 scaffold_6540:23056093-23056373 + dmo_2032 CTCTGACCTTCGAGGCCGATCGCGAGGAGCGGGCCAAGGCGCTCAACGAGAAATATGTGAGTAACACCATCTTCAATGGCGGGCGACGCAACGAGTTGAGTGACAGCGATATGGCTCATCTGGAAGCCCAAATATTGACAAACGA---------------------------AAACAAGCGACGGGT---TAGCAGCAGCAGCA--GCAGCAG------C------GG---------------------------------------------------------------------CAGGGGCAGTGGCAGC---TCAGTAAGCACCACCAGCACCAGCAACAGCCCCACAGCTCTGG------C------CCCACAAGT------------GGTGCCCACTAATGAGCC---------------CGCAATGTCA
droGri2 scaffold_15074:4400745-4400959 + CGCTATCCAGCGACATGGAGCCGGAGCAGCGCTCGAAGGCGCTCAATGACAAATATGTGAGTAACAGCATCTTCAATGGCGGCAAACGCAACGAACTCACCGACACTGAAATGGCCAACCTAGAGGCACAAATATTGACAACGGTGCC------------------------CAGTAGACG---------------------------------------------------------------------------------------------------------------------------------------------------------ACCCACAACAACCAGCAGCCCCCCG------C------TGA-----C------------CGAGGCCACTAATGAGCG---------------CACAACACCA
droWil2 scf2_1100000004943:12858435-12858683 + CGA--ACAAT------TGATGATGATGAGCGGTCGAAGGTGTTGAATGAGAAATATGTGAGTAACAGCATCTTTAATCGTGGCCAACGCAATGAGTTAAGCGACCAAGAAATGGCCCGCCTGGAAGCGCAAATTTTAACAGGAATCGGTTCTTCTTTGGCATCGGGTTCAAATAGCAAGCGAAAGGT---CAGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------GTCAACAGCGGTAGT------C------GAT-----C------------TGAATCCACTAATGAGCCGACCACAACCAGCAGCACAACGGCA
dp5 2:21717393-21717727 + CTGTCTCCTC------GGATCCGGCGGAGCGGGCCCGGCTGCTGAACGAGAAATACGTGAGTAACAGCATCTTCAATGGCGGGCAGAGGAACGAGCTGAGTGACTCCGAAATGGCCAATCTGGAGGCCCAAATACTCACGGGCGTGGG---------------------GCCAACGAAGCGGAAAGT---CAGCCTGAATAAGTCCGCTGCTCCACCAGCCACCACCACTCCAGCTTCT---------------GCCTCTCCTCTGGCTGGTGATCCTGCTCCTGC------------------------------TGCTCCTGCCCTGTTGGCCACCATAACAGTCTCCGATTGGAAGCCAACGC------CAC-----CTGGGCCCGGGCCTGGGCCCACTAATGAGGC---------------CACAACGGCA
droPer2 scaffold_3:4502125-4502459 + CTGTCTCCTC------GGATCCGGCGGAGCGGGCCCGGCTGCTGAACGAGAAATACGTGAGTAACAGCATCTTCAATGGCGGGCAGAGGAACGAGCTGAGTGACTCCGAAATGGCCAATCTGGAGGCTCAAATACTCACGGGCGTGGG---------------------GCCAACGAAGCGGAAAGT---CAGCCTGAATAAGTCCGCTGCTCCTCCAGCTACCACCACTCCAGCTTCT---------------GCCTCTCCTCTGGCTGGTGATCCTGCTCCTGC------------------------------TGCTCCTGCCCTGTTGGCCACCATAACAGTCTCCGATTGGAAGCCAACGC------CAC-----CTGGGCCCGGGCCTGGGCCCACTAATGAGGC---------------CACAACGGCA
droAna3 scaffold_13340:23256652-23256962 - CACTCACCGGAGGCGAAGATCCGGGCGAGAAGGCGCGACTCCTCAACGAGAAATACGTGAGTAACCACATCTTCAATGGCGGGCAGAGGAACGAGCTAACCGACGCGGAAATGGCTAACCTGGAGTCACAGATTATTACGGGTCTGGG---------------------CCCAATGAAACGAAAGGT---CAGCCCAAACCAATCCGCTCCTG------C---------TCCGGCTCCG---------------ACTGCTC---CGCCTGCT---------------GAAGCTG---------------CAGCACCTTCACCGGCCATTCTCACCTCCATCACGGTCTCCAAGTGGA---------------CAC-----C------------AGAGACCGCTAATGAGCCTACCACCAC------CACCACGGCA
droBip1 scf7180000396395:258171-258493 - CGCTCACCGGCGGCGAAGATCCCGCGGAGAGGGCGAGGCTCCTAAACGAGAAATACGTGAGTAACAGCATCTTCAATGGCGGGAAGAGGAACGAGCTAACCGACGCGGAGATGGCTAACCTGGAATCCCAGATTATCACGGGTCTGGG---------------------CCCAATGAAGCGAAAGGT---CAGCCCGAACCAGTCTGCTCCAG------C---------TCCTGCTCCT---------------GC---TG---CTCCTGCTGCTCCTACT---GCCGCTG---------------CTGAAGC---TC---CGGCCATTCTCACCTCCATCACGGTATCCAAGTGGACACCG---A------CAC-----C------------GGAGTCCGCTAATGAGCCTACCACCACCC---CCGCCGCGGCA
droKik1 scf7180000302707:169940-170247 - CGGTTGGTGG------AGAACCGGAGGATAAGGCACGGCTGCTCAACGAGAAATACGTGAGTAACAGCATTTTCAATGGCGGTCAACGAAACGAGCTGACCGATGCGGAAATGGCTAATCTAGAATCCCAGATTCTGACTAACCTGGG---------------------CCCCATGAAACGGAAGGT---CAGCCTGACTAAATCCGCTCCTG------C------TGCTCCTTCT------------------------GCTGCTGCTGGGGCTTCTCCT---TCCGC------------TGATTCCGACGC---TCCT------ATATCAACGTCCATAACAGTCACCAAATGGACT------CCGCCAGCAC-----C------------TGAATCGACTAATGAGGC---------------CACCACGGTA
droFic1 scf7180000453850:442311-442606 - CGGTGGCCGGGGATCCGGATCGGGCGGAGAAGGCTCGCCGGCTCAACGAGAAATACGTGAGTAACAGCATCTTCAACGGCGGCCAGAGGAACGAGCTGAGCGACGCCGAGATGGCCAATCTGGAGTCCCAGATTCTGACTAACCTGGC---------------------TCCCGCGAGGCGGAAGGT---CAGCCCCAGTCAGTCCGCTCCT---------------------GCTGCC---------------GCATCTC---CCCCTGCT------------------------------GACTCTGCGGC---TCCTGTTGCCATGACCGCTACCATAACGGTCACCAAGCTCAGT------C------CAC-----C------------TGAAGTCACTAATGAGAC---------------CGCCTCGGCA
droEle1 scf7180000491104:2898467-2898765 - CGTTGACCGG------CGATCCGGCGGAGAAGGCACGTCTGCTCAACGAGAAATACGTGAGTAATAGCATCTTCAATGGCGGTCAAAGGAACGAGCTGAGCGACACCGAGATGGCCCATCTTGAGTCCCAGATTCTGACTAACCTGGG---------------------CCCCATGAAAAGGAAGGT---CAGTGTGACCAAGTCCGCTCCTG------C------GGCTCCTGCTGCT---------------GCCGCTT---CTCCTGTT------------------------------GATTCCGCAGC---TCCTGTTGCCATAGACGCTTCCATTACGATGACGAAGCTGAGT------C------CAC-----C------------TGAAGCCATTAATGAGAG---------------CGCCCCGGCA
droRho1 scf7180000777712:2540-2838 - CGGTGACGGG------AGATCCGGCGGAGAAAGCTCGGCTGCTTAACGAGAAATACGTGAGTAACAGCATCTTCAATGGCGGTCAAAGGAACGAGCTGAGCGACGCAGAGATGGCCAATCTTGAGTCCCAGATTCTTACTAACCTGGG---------------------CCCTATGAAACGAAAGGT---CAGCCTGACTAAGTCCGCTCCTG------C------GGCTCCTGCTGCG---------------GAGGCTT---CTCCTGCT------------------------------GAATCCGCAGC---TCCTGCTGCCATGTTTGCTTCCATAACAGTCACCAAGCTAAGT------C------CAC-----C------------TGAAGCCACTAATGAGAC---------------CGCCCCGGCA
droBia1 scf7180000302411:817779-818092 - CGGTGACCGG------AGATCCAGGGGAGAAGGCTCGGCTGCTCAACGAGAAATACGTGAGTAATACCATCTTCAATGGCGGTCAAAGGAACGAGCTGAGCGACGCAGAGATGGCCAATCTGGAGTCTCAGATACTGACTAACCTGGG---------------------ACCTATGAAGCGGAAGGT---CAGCGCGACCAAAACCGCTCCGG------C------GGCTCCTGCTGCT---------------GCGCCCT---CTCCTGCTGCGCCCGCTCCCACT---------------GATTCCGACGC---TGCGGTCGCCATAACCGCCTCTATAACAGTCACCAAGCTTAGA------A------CAC-----C------------TGAAGCCACTAATGAGGC---------------CGCCCCGGCA
droTak1 scf7180000415789:846247-846542 - CGGTGTCCGG------AGATCCGGCGGAGAAGGCGCGGCTGCTCAACGAGAAATACGTGAGTAATAGCATCTTCAATGGCGGTCAAAGGAACGAGCTGAGCGACGCCGAGATGGCCAATCTGGAGTCTCAGATACTGACTAACCTGGG---------------------ACCTATGAAGCGGAAGGT---CAGCCTGACCAAATCCGCTCCAG------C------GGCTCCTGCTGCC---------------GCGTCCC---CTCCTGCTGCGTCT---------------------------------GC---TCCTGTGGCCATAACCGCTTCAATCACAGTCACCGAGCTTGGT------C------CAC-----C------------TGAAGCCACTAATGAGGC---------------CGCCACGGCA
droEug1 scf7180000409759:1037476-1037768 - CGGTGAACGG------AGATCCAGGAGAGAAAGCACGTCTGCTGAACGAAAAATACGTGAGTAATAACATCTTCAATGGCGGTCAAAGGAACGAGCTGAGCGACGCAGAGATGGCCAATCTGGAGTCCCAGATCATTACTAACCTTGG---------------------GCCCATGAAGCGGAAGGT---CAGCCTGACCAAATCCGTTCCAA------C---------------TGTT---------------GCGTCCC---CTCCTGCT---------------GCAGCTGCTCCTAGTGATACCTTGGC---TCCTGTTG------------CCATAACAGTCGTCCAGTTAGGT------C------CAC-----C------------TGAAGCCACTAATGAGAC---------------CGCCACGGCA
dm3 chr3R:1069281-1069609 - CGGTGGCCGG------AGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGCCAATCTGGAGTCACAGATACTCACTAACCTGGG---------------------ACCTATGAGGCGGAAGGT---CAGTCTGACCAAAACCGCTTCAG------C------GGCTCCTGTTCGT---------------GCACCTT---CTCCTGCTGCTCCTTCTCCTGCCGAGGCTGCCCCTCTGGATTCGGCAGC---TCCTGCTGTATTAACCGCATCTATAGCAGTCACCAAGCTTAGT------C------CAC-----C------------TGACGCCACTAATGAGAC---------------GGCCACGGCA
droSim2 3r:975974-976302 - dsi_28105 CGGTGGCCGG------AGATCCGGCAGAGAAGGCCCGACTGCTTAACGAGAAATACGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGCCAATCTGGAGTCACAGATACTCACTAACCTGGG---------------------ACCTATGAGGCGGAAGGT---CAGTCTGACCAAATCCGCTCCAG------C------GACTCCTGTTCCT---------------GCACCTT---CTCCTGCTGCTCCTTCTCCTGCCGATGCTGCCCCTCTGGATTCCGCAGC---TCCTGTTGAATTAACCGCATCCATAACAGTCACCAAGCTTAGT------C------CAC-----C------------TGACGCCACTAATGAGAC---------------GGCCACGGCA
droSec2 scaffold_6:1193130-1193458 - CGGTGGCCGG------AGATCCGGCAGAGAAGGCCCGTCTGCTTAACGAGAAATACGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGCCAATCTGGAGTCACAGATACTCACTAACCTGGG---------------------ACCTATGAGGCGGAAGGT---CAGTCTGACCAAATCCGCTCCAG------C------GACTCCTGTTCCT---------------GCACCTT---CTCCTGCTGCTCCTTCTCGTGCCGATGCTGCCCCTCTGGATTCCGCAGC---TCCTGTTGTATTAACCGCATCCATAACAGTCACCAAGCTAAGT------C------CAC-----C------------TGACGCCACTAATGAGAC---------------GGCCACGGCA
droYak3 3R:1433973-1434274 - CGGTGGCCGC------AGATCCAGCAGAGAAGGCACGACTGCTTAACGAGAAATACGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAACTAAACGACGCAGAGATGACCAATCTGGAGTCACAGATTCTCACTAACCTGGG---------------------ATCTATGAAGCGGAAGGT---CAGTCCTATCAAATCTGCTCCAA------C------GGCTCCTGTTCCT---------------GTGCCTT---TTCCTGCTGCTCCTTCTCCTGGTGAGGTTGACTCTCTGAATTCCGCAGG---TCCTGTTGCCCTAACCGCAACCATAACAGTCACAAAGCTTAGT------C------CAC-----C------------T------------------------------------------
droEre2 scaffold_4770:1346478-1346821 - CGGTGGTCGG------AGATCCGGCAGAGAAGGCACGACTGCTTAACGAGAAATACGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAAATGGTCCATCTGGAGTCCCAGATATTCACTAACCTGGG---------------------ACCTATGAAGCGGAAAGT---CAGTCTGACCAAATCCGCTCCAA------C------GGCTCCTGTTCCTGAGCCTTCTCCTGCTGCCCCTT---CTCCTGCTGCGCCTTCTCCTGCTGAGGCTGCCCCTGTGAATTCCGCAGC---TCCTGTTGCCATAACCGCATCCATAACAGTCACCAAGCTTAGT------T------CAG-----C------------TGACGCCCCTAATGAGAT---------------GGCCACGGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCCTGGCCGT------CGATACCGAGCAGCGCTCCAAGCTGCTCAACGACAAATACGTGAGTAACAGCATCTTCAATGGCGGGCAGCGGAACGAATTGAGCGACAGTGAAATGGCTCAGTTGGAAGCGCAAATTTTAACAACGGACGC------------------------GAACAGGCGACGGGTGGGCAGCTCCAGCTCA-----------------------------------G---------------A---------------------------------------------------CACC----------------AGCTCAGTCACCAGCACCAGCACAACAGTTATA------CC-----CTCACCAGC------------GGAACCCGCTAATGAGCC---------------TAGCACATCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................A-----------------------------------G---------------A---------------------------------------------------CACC----------------AGCTCAGTCACCAGCAC.............................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AACAGTTATA------CC-----CTCACCAGC------------...........................................2111.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................ATTGAGCGACAGTGAAATGGCT................................................................................................................................................................................................................................................................................................................................2211.001000000000000100000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GAACCCGCTAATGAGCC---------------TAGCA.....2211.001000000000000000000100000000000000000000000000000000000000000000
............................................................GTAACAGCATCTTCAATGGCGGG.................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
CTCTGACCTTCGAGGCCGATCGCGAGGAGCGGGCCAAGGCGCTCAACGAGAAATATGTGAGTAACACCATCTTCAATGGCGGGCGACGCAACGAGTTGAGTGACAGCGATATGGCTCATCTGGAAGCCCAAATATTGACAAACGA---------------------------AAACAAGCGACGGGT---TAGCAGCAGCAGCA--GCAGCAG------C------GG---------------------------------------------------------------------CAGGGGCAGTGGCAGC---TCAGTAAGCACCACCAGCACCAGCAACAGCCCCACAGCTCTGG------C------CCCACAAGT------------GGTGCCCACTAATGAGCC---------------CGCAATGTCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................GGT---TAGCAGCAGCAGCA--GCAGCA................................................................................................................................................................................................................................2311.001100000
..............................................................................................................................................................................................................GCAGCAG------C------GG---------------------------------------------------------------------CAGGGGCAGTGG...............................................................................................................................2211.001000001
................................................................................................TGAGTGACAGCGATATGG..................................................................................................................................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................T---TAGCAGCAGCAGCA--GCAGC.................................................................................................................................................................................................................................20200.051000010
..............................................................................................................................................................................................TAGCAGCAGCAGCA--GCAGCAG------C------..................................................................................................................................................................................................................22200.051000010
droGri2
CGCTATCCAGCGACATGGAGCCGGAGCAGCGCTCGAAGGCGCTCAATGACAAATATGTGAGTAACAGCATCTTCAATGGCGGCAAACGCAACGAACTCACCGACACTGAAATGGCCAACCTAGAGGCACAAATATTGACAACGGTGCC------------------------CAGTAGACG---------------------------------------------------------------------------------------------------------------------------------------------------------ACCCACAACAACCAGCAGCCCCCCG------C------TGA-----C------------CGAGGCCACTAATGAGCG---------------CACAACACCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................................................................CCAGCAGCCCCCCG------C------TGA-----C------------CGAGGCCACT.................................2911.00101
.........................................................................CAATGGCGGCAAACGCAACGAACT...................................................................................................................................................................................................................................................................................................................................................2411.00110
droWil2
CGA--ACAAT------TGATGATGATGAGCGGTCGAAGGTGTTGAATGAGAAATATGTGAGTAACAGCATCTTTAATCGTGGCCAACGCAATGAGTTAAGCGACCAAGAAATGGCCCGCCTGGAAGCGCAAATTTTAACAGGAATCGGTTCTTCTTTGGCATCGGGTTCAAATAGCAAGCGAAAGGT---CAGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------GTCAACAGCGGTAGT------C------GAT-----C------------TGAATCCACTAATGAGCCGACCACAACCAGCAGCACAACGGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................TTTAACAGGAATCGGTTCTTCTTTGGC....................................................................................................................................................................................................................................................................................2711.00100010
.....................................................................................................................................TTTAACAGGAATCGGTTCTT...........................................................................................................................................................................................................................................................................................2011.00100100
.....................................................................................................................................................................GTTCAAATAGCAAGCGAAAGGT---C.....................................................................................................................................................................................................................................................2311.00100010
..................................................................................................................................................................................................AAG---------------------------------------------------------------------------------------------------------------------------------------------------GTCAACAGCGGTAGT------C------GA..............................................................2111.00100001
..............................................................................................................................................AATCGGTTCTTCTTTGGC....................................................................................................................................................................................................................................................................................1811.00100010
dp5
CTGTCTCCTC------GGATCCGGCGGAGCGGGCCCGGCTGCTGAACGAGAAATACGTGAGTAACAGCATCTTCAATGGCGGGCAGAGGAACGAGCTGAGTGACTCCGAAATGGCCAATCTGGAGGCCCAAATACTCACGGGCGTGGG---------------------GCCAACGAAGCGGAAAGT---CAGCCTGAATAAGTCCGCTGCTCCACCAGCCACCACCACTCCAGCTTCT---------------GCCTCTCCTCTGGCTGGTGATCCTGCTCCTGC------------------------------TGCTCCTGCCCTGTTGGCCACCATAACAGTCTCCGATTGGAAGCCAACGC------CAC-----CTGGGCCCGGGCCTGGGCCCACTAATGAGGC---------------CACAACGGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................GAACGAGCTGAGTGACTCCG........................................................................................................................................................................................................................................................................................................................................2012.0020200000000
...................................CGGCTGCTGAACGAGAAATACG...........................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000020
.................................................................................................GAGTGACTCCGAAATGGC.................................................................................................................................................................................................................................................................................................................................1811.0010000000001
.......................................TGCTGAACGAGAAATACGTGAGT......................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................AAATACTCACGGGCGTGGG---------------------GCC........................................................................................................................................................................................................................................................................2211.0010010000000
...................................................................CATCTTCAATGGCGGGCAGAGGAAC........................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..............................................................................................................................................CGTGGG---------------------GCCAACGAAGCGGAAA...........................................................................................................................................................................................................................................................2211.0010000001000
........................................................................................................................................................................................................................................................................................TCCTGC------------------------------TGCTCCTGC...............................................................................................................15200.0510000000100
droPer2
CTGTCTCCTC------GGATCCGGCGGAGCGGGCCCGGCTGCTGAACGAGAAATACGTGAGTAACAGCATCTTCAATGGCGGGCAGAGGAACGAGCTGAGTGACTCCGAAATGGCCAATCTGGAGGCTCAAATACTCACGGGCGTGGG---------------------GCCAACGAAGCGGAAAGT---CAGCCTGAATAAGTCCGCTGCTCCTCCAGCTACCACCACTCCAGCTTCT---------------GCCTCTCCTCTGGCTGGTGATCCTGCTCCTGC------------------------------TGCTCCTGCCCTGTTGGCCACCATAACAGTCTCCGATTGGAAGCCAACGC------CAC-----CTGGGCCCGGGCCTGGGCCCACTAATGAGGC---------------CACAACGGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................TCCTCTGGCTGGTGATCCTGCTCC.........................................................................................................................................................2411.001100000
............................................................GTAACAGCATCTTCAATGGCGGGC................................................................................................................................................................................................................................................................................................................................................................2411.001001000
droAna3
CACTCACCGGAGGCGAAGATCCGGGCGAGAAGGCGCGACTCCTCAACGAGAAATACGTGAGTAACCACATCTTCAATGGCGGGCAGAGGAACGAGCTAACCGACGCGGAAATGGCTAACCTGGAGTCACAGATTATTACGGGTCTGGG---------------------CCCAATGAAACGAAAGGT---CAGCCCAAACCAATCCGCTCCTG------C---------TCCGGCTCCG---------------ACTGCTC---CGCCTGCT---------------GAAGCTG---------------CAGCACCTTCACCGGCCATTCTCACCTCCATCACGGTCTCCAAGTGGA---------------CAC-----C------------AGAGACCGCTAATGAGCCTACCACCAC------CACCACGGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................CTTCAATGGCGGGCAGAG............................................................................................................................................................................................................................................................................................................................................................1811.001100000
...........................................................................................................................................................................................................................................................................................................................................CACCTCCATCACGGTCTCCAA....................................................................................2111.001100000
...........................AGAAGGCGCGACTCCTCAACGAGAA................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.............................................................................GGCGGGCAGAGGAACGAGCTAACCG..............................................................................................................................................................................................................................................................................................................................................2511.001000100
droBip1
CGCTCACCGGCGGCGAAGATCCCGCGGAGAGGGCGAGGCTCCTAAACGAGAAATACGTGAGTAACAGCATCTTCAATGGCGGGAAGAGGAACGAGCTAACCGACGCGGAGATGGCTAACCTGGAATCCCAGATTATCACGGGTCTGGG---------------------CCCAATGAAGCGAAAGGT---CAGCCCGAACCAGTCTGCTCCAG------C---------TCCTGCTCCT---------------GC---TG---CTCCTGCTGCTCCTACT---GCCGCTG---------------CTGAAGC---TC---CGGCCATTCTCACCTCCATCACGGTATCCAAGTGGACACCG---A------CAC-----C------------GGAGTCCGCTAATGAGCCTACCACCACCC---CCGCCGCGGCASizeHit CountTotal NormTotal
No Reads
droKik1
CGGTTGGTGG------AGAACCGGAGGATAAGGCACGGCTGCTCAACGAGAAATACGTGAGTAACAGCATTTTCAATGGCGGTCAACGAAACGAGCTGACCGATGCGGAAATGGCTAATCTAGAATCCCAGATTCTGACTAACCTGGG---------------------CCCCATGAAACGGAAGGT---CAGCCTGACTAAATCCGCTCCTG------C------TGCTCCTTCT------------------------GCTGCTGCTGGGGCTTCTCCT---TCCGC------------TGATTCCGACGC---TCCT------ATATCAACGTCCATAACAGTCACCAAATGGACT------CCGCCAGCAC-----C------------TGAATCGACTAATGAGGC---------------CACCACGGTASizeHit CountTotal NormTotal
No Reads
droFic1
CGGTGGCCGGGGATCCGGATCGGGCGGAGAAGGCTCGCCGGCTCAACGAGAAATACGTGAGTAACAGCATCTTCAACGGCGGCCAGAGGAACGAGCTGAGCGACGCCGAGATGGCCAATCTGGAGTCCCAGATTCTGACTAACCTGGC---------------------TCCCGCGAGGCGGAAGGT---CAGCCCCAGTCAGTCCGCTCCT---------------------GCTGCC---------------GCATCTC---CCCCTGCT------------------------------GACTCTGCGGC---TCCTGTTGCCATGACCGCTACCATAACGGTCACCAAGCTCAGT------C------CAC-----C------------TGAAGTCACTAATGAGAC---------------CGCCTCGGCASizeHit CountTotal NormTotal
No Reads
droEle1
CGTTGACCGG------CGATCCGGCGGAGAAGGCACGTCTGCTCAACGAGAAATACGTGAGTAATAGCATCTTCAATGGCGGTCAAAGGAACGAGCTGAGCGACACCGAGATGGCCCATCTTGAGTCCCAGATTCTGACTAACCTGGG---------------------CCCCATGAAAAGGAAGGT---CAGTGTGACCAAGTCCGCTCCTG------C------GGCTCCTGCTGCT---------------GCCGCTT---CTCCTGTT------------------------------GATTCCGCAGC---TCCTGTTGCCATAGACGCTTCCATTACGATGACGAAGCTGAGT------C------CAC-----C------------TGAAGCCATTAATGAGAG---------------CGCCCCGGCASizeHit CountTotal NormTotal
No Reads
droRho1
CGGTGACGGG------AGATCCGGCGGAGAAAGCTCGGCTGCTTAACGAGAAATACGTGAGTAACAGCATCTTCAATGGCGGTCAAAGGAACGAGCTGAGCGACGCAGAGATGGCCAATCTTGAGTCCCAGATTCTTACTAACCTGGG---------------------CCCTATGAAACGAAAGGT---CAGCCTGACTAAGTCCGCTCCTG------C------GGCTCCTGCTGCG---------------GAGGCTT---CTCCTGCT------------------------------GAATCCGCAGC---TCCTGCTGCCATGTTTGCTTCCATAACAGTCACCAAGCTAAGT------C------CAC-----C------------TGAAGCCACTAATGAGAC---------------CGCCCCGGCASizeHit CountTotal NormTotal
No Reads
droBia1
CGGTGACCGG------AGATCCAGGGGAGAAGGCTCGGCTGCTCAACGAGAAATACGTGAGTAATACCATCTTCAATGGCGGTCAAAGGAACGAGCTGAGCGACGCAGAGATGGCCAATCTGGAGTCTCAGATACTGACTAACCTGGG---------------------ACCTATGAAGCGGAAGGT---CAGCGCGACCAAAACCGCTCCGG------C------GGCTCCTGCTGCT---------------GCGCCCT---CTCCTGCTGCGCCCGCTCCCACT---------------GATTCCGACGC---TGCGGTCGCCATAACCGCCTCTATAACAGTCACCAAGCTTAGA------A------CAC-----C------------TGAAGCCACTAATGAGGC---------------CGCCCCGGCASizeHit CountTotal NormTotal
No Reads
droTak1
CGGTGTCCGG------AGATCCGGCGGAGAAGGCGCGGCTGCTCAACGAGAAATACGTGAGTAATAGCATCTTCAATGGCGGTCAAAGGAACGAGCTGAGCGACGCCGAGATGGCCAATCTGGAGTCTCAGATACTGACTAACCTGGG---------------------ACCTATGAAGCGGAAGGT---CAGCCTGACCAAATCCGCTCCAG------C------GGCTCCTGCTGCC---------------GCGTCCC---CTCCTGCTGCGTCT---------------------------------GC---TCCTGTGGCCATAACCGCTTCAATCACAGTCACCGAGCTTGGT------C------CAC-----C------------TGAAGCCACTAATGAGGC---------------CGCCACGGCASizeHit CountTotal NormTotal
No Reads
droEug1
CGGTGAACGG------AGATCCAGGAGAGAAAGCACGTCTGCTGAACGAAAAATACGTGAGTAATAACATCTTCAATGGCGGTCAAAGGAACGAGCTGAGCGACGCAGAGATGGCCAATCTGGAGTCCCAGATCATTACTAACCTTGG---------------------GCCCATGAAGCGGAAGGT---CAGCCTGACCAAATCCGTTCCAA------C---------------TGTT---------------GCGTCCC---CTCCTGCT---------------GCAGCTGCTCCTAGTGATACCTTGGC---TCCTGTTG------------CCATAACAGTCGTCCAGTTAGGT------C------CAC-----C------------TGAAGCCACTAATGAGAC---------------CGCCACGGCASizeHit CountTotal NormTotal
No Reads
dm3
CGGTGGCCGG------AGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGCCAATCTGGAGTCACAGATACTCACTAACCTGGG---------------------ACCTATGAGGCGGAAGGT---CAGTCTGACCAAAACCGCTTCAG------C------GGCTCCTGTTCGT---------------GCACCTT---CTCCTGCTGCTCCTTCTCCTGCCGAGGCTGCCCCTCTGGATTCGGCAGC---TCCTGCTGTATTAACCGCATCTATAGCAGTCACCAAGCTTAGT------C------CAC-----C------------TGACGCCACTAATGAGAC---------------GGCCACGGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................GT---------------GCACCTT---CTCCTGCTGCTC................................................................................................................................................................21111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................GACGCAGAGATGGCCAATCTGGAGT......................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGCTTAACGAGAAATATGTGAG.......................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TATGAGGCGGAAGGT---CAGTCT................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CCCCTCTGGATTCGGCAGC---TC......................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TCAGAGGAAAGAACTGAGCGACGCAGA.......................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................ATGAGGCGGAAGGT---CAGTCTGA..............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AGAGGAAAGAACTGAGCGA.............................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GTATTAACCGCATCTATAGCAGTCACCA.....................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTCAG------C------GGCTCCTGTTCGT---------------GCA...................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATCCGGCAGAGAAGGCGC................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CACCTT---CTCCTGCTGCTCCTTCTCC.........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................CTGGG---------------------ACCTATGAGGCGGAAGGT---......................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................CAGTCTGACCAAAACCGCTTCAG------.........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CACTAACCTGGG---------------------ACCTATGAGGC................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................CTAACCTGGG---------------------ACCTATGAGG.................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................GAGTAATAGCATCTTTAATGGCG...................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GAGATGGCCAATCTGGAGTCACAGA................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CAC-----C------------TGACGCCACTAATGAGAC---------------GGC.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TCAG------C------GGCTCCTGTTCGT---------------GC....................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................AACCTGGG---------------------ACCTATGAGGCGGA.............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TAACCTGGG---------------------ACCTATGAGGCGGAAGG..........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CAGAGGAAAGAACTGAGCGACGCA.........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AGATCCGGCAGAGAAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................G---------------------ACCTATGAGGCGGAAGG..........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................ATCTGGAGTCACAGATACTCACTA.......................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................AGAACTGAGCGACGCAGAGATGGCC................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................TGGCGGTCAGAGGAAAGAACT...................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................GCGGTCAGAGGAAAGAACTGA.................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.............................................................................................................................................................................ATGAGGCGGAAGGT---CAGTCT................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................AGTCTGACCAAAACCGCTTCAG------C------GGCT..............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GCCCCTCTGGATTCGGCAGC---TCCT....................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................GATCCGGCAGAGAAGGCGCGACTGC..........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................AATCTGGAGTCACAGATACTCACTAACC....................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CCTGTTCGT---------------GCACCTT---CTCCT.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CTCTGGATTCGGCAGC---TCCTG...................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.....................................................................................................................................................................................................................................TCCTGTTCGT---------------GCACCTT---CTCCTGCTGC..................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TGAGCGACGCAGAGATGGCCAATCT...........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TAACGAGAAATATGTGAGTAATAGCA...............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TCTATAGCAGTCACCAAG...................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................GTCACCAAGCTTAGT------C------CAC-----C------------TGAC.......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GAAGGCGCGACTGCTTAACGAGAAATATGT..........................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................ATGGCGGTCAGAGGAAAGAACT...................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................................TGGG---------------------ACCTATGAGGCGGAAGGT---CA....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AACTGAGCGACGCAGAGAT....................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TTAACGAGAAATATGTGAGTAATAG.................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CACTAACCTGGG---------------------ACCTATGAGGCGGAAG...........................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GAGGAAAGAACTGAGCGACGC..........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TAACCTGGG---------------------ACCTATGAGGCG...............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................CTAACCTGGG---------------------ACCTATGAGGCGGAA............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................GGCGGAAGGT---CAGTCTGACCAA..........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGGCCAATCTGGAGTCACAG.................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
CGGTGGCCGG------AGATCCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CCCTCTGGATTCGGCAGC---TCCTG...................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droSim2
CGGTGGCCGG------AGATCCGGCAGAGAAGGCCCGACTGCTTAACGAGAAATACGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGCCAATCTGGAGTCACAGATACTCACTAACCTGGG---------------------ACCTATGAGGCGGAAGGT---CAGTCTGACCAAATCCGCTCCAG------C------GACTCCTGTTCCT---------------GCACCTT---CTCCTGCTGCTCCTTCTCCTGCCGATGCTGCCCCTCTGGATTCCGCAGC---TCCTGTTGAATTAACCGCATCCATAACAGTCACCAAGCTTAGT------C------CAC-----C------------TGACGCCACTAATGAGAC---------------GGCCACGGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................ACCTATGAGGCGGAAGGT---......................................................................................................................................................................................................................................................1812.00220000000000000000
...............................................................................................................................................................................................................CTCCAG------C------GACTCCTGTTCCT---------------GCAC..................................................................................................................................................................................2411.00101000000000000000
....................................................................................AGAGGAAAGAACTGAGCGACGCAG........................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..............................................................................................................................................................................TGAGGCGGAAGGT---CAGTC.................................................................................................................................................................................................................................................1811.00100000000001000000
...................................................................................CAGAGGAAAGAACTGAGC...............................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.......................................................................................................................CTGGAGTCACAGATACTC...........................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.....................................................................................GAGGAAAGAACTGAGCGACGCA.........................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
droSec2
CGGTGGCCGG------AGATCCGGCAGAGAAGGCCCGTCTGCTTAACGAGAAATACGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGCCAATCTGGAGTCACAGATACTCACTAACCTGGG---------------------ACCTATGAGGCGGAAGGT---CAGTCTGACCAAATCCGCTCCAG------C------GACTCCTGTTCCT---------------GCACCTT---CTCCTGCTGCTCCTTCTCGTGCCGATGCTGCCCCTCTGGATTCCGCAGC---TCCTGTTGTATTAACCGCATCCATAACAGTCACCAAGCTAAGT------C------CAC-----C------------TGACGCCACTAATGAGAC---------------GGCCACGGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................GG---------------------ACCTATGAGGCGGAAGGT---C.....................................................................................................................................................................................................................................................2111.0010100
droYak3
CGGTGGCCGC------AGATCCAGCAGAGAAGGCACGACTGCTTAACGAGAAATACGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAACTAAACGACGCAGAGATGACCAATCTGGAGTCACAGATTCTCACTAACCTGGG---------------------ATCTATGAAGCGGAAGGT---CAGTCCTATCAAATCTGCTCCAA------C------GGCTCCTGTTCCT---------------GTGCCTT---TTCCTGCTGCTCCTTCTCCTGGTGAGGTTGACTCTCTGAATTCCGCAGG---TCCTGTTGCCCTAACCGCAACCATAACAGTCACAAAGCTTAGT------C------CAC-----C------------T------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......CGC------AGATCCAGCAGAGAAGGCACGA..............................................................................................................................................................................................................................................................................................................................................................................................................2522.00400000000004
.................................................................................................................................................................................................................CCAA------C------GGCTCCTGTTCCT---------------GTGCC.................................................................................................................................................................................2320.50100100000000
..................................................AAATACGTGAGTAATAGC................................................................................................................................................................................................................................................................................................................................................................................1820.50100000100000
............................................................................................GAACTAAACGACGCAGAGAT....................................................................................................................................................................................................................................................................................................................................2020.50101000000000
droEre2
CGGTGGTCGG------AGATCCGGCAGAGAAGGCACGACTGCTTAACGAGAAATACGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAAATGGTCCATCTGGAGTCCCAGATATTCACTAACCTGGG---------------------ACCTATGAAGCGGAAAGT---CAGTCTGACCAAATCCGCTCCAA------C------GGCTCCTGTTCCTGAGCCTTCTCCTGCTGCCCCTT---CTCCTGCTGCGCCTTCTCCTGCTGAGGCTGCCCCTGTGAATTCCGCAGC---TCCTGTTGCCATAACCGCATCCATAACAGTCACCAAGCTTAGT------T------CAG-----C------------TGACGCCCCTAATGAGAT---------------GGCCACGGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................TGCCCCTGTGAATTCCGCAGC---TCC.....................................................................................................................2418.0080000008
...................................................................................................................................................G---------------------ACCTATGAAGCGGAAAGT---......................................................................................................................................................................................................................................................1911.0010000010
..............................................................................GCGGTCAGAGGAAAGAACTGAGCG..............................................................................................................................................................................................................................................................................................................................................2411.0010000100
...................................................................................................................................................G---------------------ACCTATGAAGCGGAAAGT---CAGTC.................................................................................................................................................................................................................................................2411.0010100000

Generated: 05/16/2015 at 10:13 PM