ID:

dvi_437

 Coordinate:

scaffold_12958:2991973-2992052 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-26.3 -26.1 -26.0

Flybase annnotation

intergenic

No Repeatable elements found

mature
star
  1. scaffold_12736:152834-152859 +
  2. scaffold_12937:112033-112058 -
  3. scaffold_12937:124723-124748 -
  4. dvi_437  scaffold_12958:2992010-2992035 -
  5. scaffold_13050:1839981-1840006 -
  6. scaffold_13324:2181388-2181413 +

Sense Strand Reads

CAGCTGCAAGTGAGCTTTTGCGAAAGCTATCTCGAGAAAGCTTTGCTGCACTCGAGCACCACTCACGTACTTGAGTTGCGATCAGCTGAGCGCAGCTTAAGTTTTGCAAGAACTTGGTCACTCGCACTGCACGCGGTAATTTTTCGTTAAACAATCGTTAATTCTTATAACACTCCGGCT
****************************************************((((.((((.((..((((((((((((((.((....)).))))))))))))...))..))...))))..)))).((((....))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 GSM1528803
follicle cells		 SRR060682
9x140_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 M061
embryo
 SRR060687
9_0-2h_embryos_total
 SRR1106714
embryo_2-4h
 SRR1106729
mixed whole adult body
 SRR060673
9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR1106712
embryo_0-2h
 SRR1106720
embryo_8-10h
 SRR060688
160_ovaries_total
 SRR1106713
embryo_0-2h
 SRR1106718
embryo_6-8h
 SRR1106721
embryo_10-12h
 SRR060654
160x9_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR1106723
embryo_12-14h
 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
........................................................................................................TGCAAGAACTTGGTCACTCGCACTGC.................................................. 26 0 1 50.00 50 7 0 6 9 5 6 5 5 4 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTCGCACTG................................................... 25 0 1 16.00 16 8 0 2 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTCGCACTGCA................................................. 27 0 1 15.00 15 4 0 4 1 2 1 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTAATTCTTTTAACACTCCA... 20 2 5 13.80 69 0 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTCGCACTGCACGCGG............................................ 32 0 1 11.00 11 0 0 0 0 0 0 0 0 0 0 2 3 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTCGCACTGCAC................................................ 28 0 1 10.00 10 3 0 1 0 2 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTCGCACT.................................................... 24 0 1 7.00 7 3 0 0 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ATCTCGAGAAAGCTTTGCTGCACTCGA............................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTCGCA...................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTAATTCTTTTAACACTCCG... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CTGCAAGAACTTGGTCACTCGCACTGCAC................................................ 29 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTTGCACTGTAA................................................ 28 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTCGCACTGCACG............................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AAGAACTTGGTCACTCGCACTGCACGCGG............................................ 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CAAGAACTTGGTCACTCGCACTGCA................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TCTCGAGAAAGCTTTGCTGCACTCG.............................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTCGCACTAC.................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAATAACTTGGTCACTCGCACTGC.................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTC......................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTCGCAAT.................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTCG........................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GCAAGAACTTGGTCACTCGCACTGC.................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GCAAGAACTTGGTCACTCGCACT.................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GCAAGAACTTGGTCACTCGCA...................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGGTCACTCGCAC..................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................ATAATTCTTTTAACACTCC.... 19 2 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGCTCACTCGCACT.................................................... 24 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAAGAACTTGCTCACT.......................................................... 18 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................TACTTGAGTTGCGATCAGCTGAGCGC....................................................................................... 26 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................TTAATTCTTATAAAACTCCA... 20 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTGAGTTGCGATCAGCTGAGCGCAGCT................................................................................... 27 0 20 0.15 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................TACTTGAGTTGCGATCAGCTG............................................................................................ 21 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................TTGAGTTGCGATCAGCTGAGCGCAG..................................................................................... 25 0 20 0.10 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................TTAATTCTTGTAAGACTCCA... 20 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ATCTCGCGAAAGCTTTGCTGCCCTCG.............................................................................................................................. 26 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GAGTTGCGATCAGCTGAGCGC....................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................GCGGTAATTTTTCGGTAT.............................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................AGTTGCGATCAGCTGAGCGCA...................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTAATTCTTTTAACCCTCCA... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTGAGTTGCGCTCAGCTGAGC......................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGAGTTGCGATCAGCTGAGCGCAGCT................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................CTCTCGAGAAAGCTTTGCTGCACT................................................................................................................................ 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................CTTGAGTTGCGATCAGCTGAG.......................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
....GGCAAGTGCGCTTTTGGGA............................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................TTGAGTTGCGATCAGCTGAGCGCAGC.................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GTTGCGATCAGCTGAGCG........................................................................................ 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................ATTGAGTTGCGATCAGCTGAGCGCAGCT................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GTAATTCTTTTAACACTCCA... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTGGACAAACTTGGTCACT.......................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTCGACGTTCACTCGAAAACGCTTTCGATAGAGCTCTTTCGAAACGACGTGAGCTCGTGGTGAGTGCATGAACTCAACGCTAGTCGACTCGCGTCGAATTCAAAACGTTCTTGAACCAGTGAGCGTGACGTGCGCCATTAAAAAGCAATTTGTTAGCAATTAAGAATATTGTGAGGCCGA
***********************************((((.((((.((..((((((((((((((.((....)).))))))))))))...))..))...))))..)))).((((....))))........**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060677
Argx9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 M047
female body
 SRR060674
9x140_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060673
9_ovaries_total
 SRR060670
9_testes_total
 SRR060678
9x140_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060679
140x9_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060683
160_testes_total
 SRR060655
9x160_testes_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 V116
male body		 M027
male body		 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 V047
embryo
.........................................................................................CGCGTCGAATTCAAAACGTTCTTGA.................................................................. 25 0 20 10.15 203 18 0 0 0 23 35 8 20 34 0 18 11 3 8 6 8 3 2 0 1 0 1 1 1 0 0 1 0 0 1 0 0
.......................................................................................................................................................GTTAGCAATTAAGAATATTGTGAG..... 24 0 1 8.00 8 3 2 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTTAGCAATTAAGAATATTGTGAG..... 25 0 1 7.00 7 1 2 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTGTTAGCAATTAAGAATATTGTGAG..... 26 0 1 7.00 7 2 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GCGTCGAATTCAAAACGTTCTTGA.................................................................. 24 0 20 5.65 113 9 1 24 8 26 13 5 1 12 0 0 0 3 6 2 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTTGTTAGCAATTAAGAATATTGTGAG..... 27 0 1 5.00 5 1 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCGCGTCGAATTCAAAACGTTCTTGA.................................................................. 26 0 20 3.50 70 7 4 19 5 0 3 2 14 6 0 3 0 0 0 2 0 0 0 3 0 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGTCGAATTCAAAACGTTCTTGA.................................................................. 23 0 20 2.85 57 0 0 0 8 0 22 0 13 0 0 1 2 3 0 3 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................CTCGCGTCGAATTCAAAACGTTCTTGA.................................................................. 27 0 20 2.60 52 6 5 21 0 0 9 0 0 5 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................GTCGAATTCAAAACGTTCTTGA.................................................................. 22 0 20 2.40 48 7 1 11 4 0 0 0 0 6 0 0 1 7 4 1 1 0 0 1 0 0 0 0 2 2 0 0 0 0 0 0 0
.............................................................................................TCGAATTCAAAACGTTCTTGA.................................................................. 21 0 20 1.60 32 0 0 3 1 7 4 3 4 0 0 0 0 2 1 1 1 2 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTGTTAGCAATTAAGAATATTGGGAG..... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTAGCAATTAAGAATATTGTGAGGC... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................GGTGAGTGCATGAACTCAACGCTAGT................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CTGGTGAGTGCATGAACTCAACGC.................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGCGTCGAATTCAAAACGTTCTTGA.................................................................. 25 1 20 0.50 10 0 0 2 0 0 0 0 0 0 1 0 2 0 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................ACTCGCGTCGAATTCAAAACGTTCTTGA.................................................................. 28 0 20 0.40 8 0 0 2 1 0 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................CGTCGAATTCAAAACGTTCTTG................................................................... 22 0 20 0.35 7 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTCGAATTCAAAACGTTCTTGA.................................................................. 23 1 20 0.35 7 0 0 1 1 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CGTGCGCCATTAAAAAGCAATTTGT........................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TCGAAACGACGTGAGCTC............................................................................................................................ 18 0 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GAGGTCGTGGTGAGTGCC................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GACTCGCGTCGAATTCAAAACGTTCT..................................................................... 26 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CGACTCGCGTCGAATTCAAAACGTTCT..................................................................... 27 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGCGTCGAATTCAAAACGTTCT..................................................................... 22 0 20 0.15 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGCGTCGAATTCAAAACGTTCTTG................................................................... 24 0 20 0.15 3 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGTCGAATTCAAAACGTTC...................................................................... 19 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCGTCGAATTCAAAACGTTCTTGA.................................................................. 24 1 20 0.10 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CTCGCGTCGAATTCAAAACGTTCT..................................................................... 24 0 20 0.10 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GTCGAATTCAAAACGTTCTTG................................................................... 21 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCGAATTCAAAACGTTCTTG................................................................... 20 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CGCTAGTCGACTCGCGTCGAATT................................................................................ 23 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATCGCGTCGAATTCAAAACGTTCTTGA.................................................................. 27 1 20 0.10 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CTCGCGTCGAATTCAAAACGTTCTTG................................................................... 26 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ACTCGCGTCGAATTCAAAACGTTCT..................................................................... 25 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GACTCGCGTCGAATTCAAAACGTT....................................................................... 24 0 20 0.10 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................AGCGTCGAATTCAAAACGTTCTTGA.................................................................. 25 1 20 0.10 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGAACTCAACGCTAGTCGACTCG......................................................................................... 23 0 20 0.10 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGTCGAACTCAAAACGTTCTTGA.................................................................. 23 1 20 0.10 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGCGTCGAATTCAAAACGTTCTTGA.................................................................. 26 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGCGTCGCATTCAAAACGTTCTTGA.................................................................. 25 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GAGGTCGTGGTGAGTGCCA............................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGCGTCGAATTCACAACGTTCTTGA.................................................................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGTTGAATTCAAAACGTTCTTGA.................................................................. 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGCGTCGAATTCAAAACGTTCTAGA.................................................................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................AACTCGCGTCGAATTCAAAACGTTCT..................................................................... 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TTTCGCGTCGAATTCAAAACGTTCTT.................................................................... 26 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GTGACGTGCGCCATTAAAAA.................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................TCGCGTCGAATTCAAAACGTT....................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACGCTAGTCGACTCGCGTCGAAT................................................................................. 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGCGTCGAATCCAAAACGTTCTTGA.................................................................. 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CTCGCGTCGAATTCAAAAC.......................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................TCAACGCTAGTCGACTCGCGTCGAAT................................................................................. 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................TGCGCGTCGAATTCAAAACGTTCTTGA.................................................................. 27 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GCGCGTCGAATTCAAAACGTTCTTGA.................................................................. 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CGTGACGTGCGCCATTAAAAA.................................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTCGACTCGCGTCGAATTCAAAACGTTC...................................................................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGCGTCGAATTCTAAACGTTCTTGA.................................................................. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GCTAGTCGACTCGCGTCGAATTCAAAACG......................................................................... 29 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GATGTCGAATTCAAAACGTTCTTGA.................................................................. 25 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGTCGAATTCAAAACGTT....................................................................... 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GTCGAATTCAAAACGTTC...................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CCGCGTCGAATTCAAAACGTTCTTGA.................................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GATGCGTCGAATTCAAAACGTTCTTGA.................................................................. 27 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGCGTCGAATTCAAAACGCTCTTGA.................................................................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TACTCGCGTCGAATTCAAAACGTTCT..................................................................... 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ACGCGTCGAATTCAAAACGTTCTTGA.................................................................. 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGTCGAATTCAAAACGTTCTTGAAC................................................................ 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GCGTCTAATTCAAAACGTTCTTGA.................................................................. 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GAACTCAACGCTAGTCGACTCGCGTCGA................................................................................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGTCGAATTCAAAACGTTCTTGAA................................................................. 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AATCGCGTCGAATTCAAAACGTTCTTGA.................................................................. 28 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCGCGTCGAATTCAAAACGTTCT..................................................................... 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCGCGTCGAATTCAAAACG......................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................CTGTCGAATTCAAAACGTTCTTGA.................................................................. 24 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGCGTCGAATTCAAAACGTTCTT.................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CTCGCGTCGAATTCAAAACGT........................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................GTCGCGTCGAATTCAAAACGTTCTTGA.................................................................. 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TCGACTCGCGTCGAATTCAAAACGTTC...................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CGAATTCAAAACGTTCTTGTA................................................................. 21 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ACTCGCGTCGAATTCAAAATGTTCTTGA.................................................................. 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGTGCGTGACGTGCGCCAT.......................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CTCAACGCTAGTCGACTCG......................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................CCCGTCGAATTCAAAACGTTCTTGA.................................................................. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CTCGCGTCGAATTCAAAACGTTCTT.................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................CGCTAGTCGGCTCGCGTCGGA.................................................................................. 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................GTCGAATTCCAAACGTTCTTG................................................................... 21 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCGCGTCGAATCCAAAACGTTCTTGA.................................................................. 26 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTCGACTCGCGTCGAATTCAAAACGTT....................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12958:2991923-2992102 - dvi_437 CAGCTGCAAGTGAGCTTTTGCGAAAGCTATCTCGAGAAAGCTTTGCTGCACTCGAGCACCACTCACGTACTTGAGTTGCGATCAGCTGAGCGCAGCTTAAGTTTTGCAAGAACTTGGTCACTCGCACTGCACGCGGTAATTTTTCGTTAAACAATCGTTAATTCTTATAACACTCCGGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAGCTGCAAGTGAGCTTTTGCGAAAGCTATCTCGAGAAAGCTTTGCTGCACTCGAGCACCACTCACGTACTTGAGTTGCGATCAGCTGAGCGCAGCTTAAGTTTTGCAAGAACTTGGTCACTCGCACTGCACGCGGTAATTTTTCGTTAAACAATCGTTAATTCTTATAACACTCCGGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................TGCAAGAACTTGGTCACTCGCACTGC..................................................26150.0050007400000000000000000000605500006019520000000000000000000000000
........................................................................................................TGCAAGAACTTGGTCACTCGCACTG...................................................25116.0016008000000000000000000000001300002011000000000000000000000000000
........................................................................................................TGCAAGAACTTGGTCACTCGCACTGCA.................................................27115.0015004000000000000000000001102000004001110000000000000000000000000
........................................................................................................TGCAAGAACTTGGTCACTCGCACTGCACGCGG............................................32111.0011000000000000000000000000000000000000000011200010210000000300000
........................................................................................................TGCAAGAACTTGGTCACTCGCACTGCAC................................................28110.0010003000000000000000000000302000001000100000000000000000000000000
........................................................................................................TGCAAGAACTTGGTCACTCGCACT....................................................2417.007003000000000000000000001000000000002000010000000000000000000000
............................ATCTCGAGAAAGCTTTGCTGCACTCGA.............................................................................................................................2712.002002000000000000000000000000000000000000000000000000000000000000
........................................................................................................TGCAAGAACTTGGTCACTCGCA......................................................2211.001000000000000000000000000100000000000000000000000000000000000000
........................................................................................................TGCAAGAACTTGGTCACTCGCACTGCACG...............................................2911.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................AAGAACTTGGTCACTCGCACTGCACGCGG............................................2911.001000000000000000000000000000000000000000000100000000000000000000
..........................................................................................................CAAGAACTTGGTCACTCGCACTGCA.................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................TCTCGAGAAAGCTTTGCTGCACTCG..............................................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................TGCAAGAACTTGGTCACTC.........................................................1911.001000000000000000000000000000000000000001000000000000000000000000
........................................................................................................TGCAAGAACTTGGTCACTCG........................................................2011.001000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................GCAAGAACTTGGTCACTCGCACTGC..................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GCAAGAACTTGGTCACTCGCACT....................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GCAAGAACTTGGTCACTCGCA......................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................TGCAAGAACTTGGTCACTCGCAC.....................................................2311.001000000000000000000000000000000000000100000000000000000000000000
...................................................................TACTTGAGTTGCGATCAGCTGAGCGC.......................................................................................2660.171000000000000000000000000000000000000000000000000000100000000000
......................................................................TTGAGTTGCGATCAGCTGAGCGCAGCT...................................................................................27200.153002000001000000000000000000000000000000000000000000000000000000
...................................................................TACTTGAGTTGCGATCAGCTG............................................................................................2170.141000000000000000000000000010000000000000000000000000000000000000
......................................................................TTGAGTTGCGATCAGCTGAGCGCAG.....................................................................................25200.102000000000010000000000000000000000000100000000000000000000000000
........................................................................GAGTTGCGATCAGCTGAGCGC.......................................................................................21200.051000000000100000000000000000000000000000000000000000000000000000
.........................................................................AGTTGCGATCAGCTGAGCGCA......................................................................................21200.051000000000000000000000000000000000000001000000000000000000000000
.......................................................................TGAGTTGCGATCAGCTGAGCGCAGCT...................................................................................26200.051000000000000000000000000010000000000000000000000000000000000000
.....................................................................CTTGAGTTGCGATCAGCTGAG..........................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................TTGAGTTGCGATCAGCTGAGCGCAGC....................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................GTTGCGATCAGCTGAGCG........................................................................................18200.051000010000000000000000000000000000000000000000000000000000000000

Generated: 05/15/2015 at 06:30 PM