ID:

dvi_4253

 Coordinate:

scaffold_12855:6981316-6981466 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ10198-cds]; exon [dvir_GLEANR_10139:2]; intron [Dvir\GJ10198-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGTCTTAAAGCTTGTCAACGCCTCCGACCGCTCGCACCCACATTGTGTGGTGCGGTTAACGAGCGAAAGTTTTCAACTTAAATGTTAGTTATGAATTTGATTAGGCCCTGTTGTTTGGTTCGCCGCAGTATCTCAGCCTGATTAATTAATATGCATTTGATTTGTCAAAATATATTTATTTTATTCTTCTGTGTTTACAGCTCAAAGCCTGCCGCACTATTGCGAGGAGAAGCAGTTCCGTTGCAGGGAG
**************************************************.(((((....(((((.(((.....((((.......(((((((......))))))).....))))))).))))))))))(((...(((...((.(((..((((((..(((((....))))).))))))....))).))..)))....)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060687
9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 V047
embryo
 SRR060659
Argentina_testes_total
 SRR060679
140x9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
......................................................................................................................................................................................................................GCACTATTGCGAGGAGAAGC................. 20 0 1 2.00 2 0 0 1 0 0 0 1 0 0 0
................................................................................................................................................................................................................................GAGGAGAAGCAGTTCCGTTGCA..... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GCGAGGAGAAGCAGTTCCGT......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GCACTATTGCGAGGAGAAG.................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GAAGCAGTTCCGTTGCAGGG.. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TCACAGCACAAAGCCAGCCGCA.................................. 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................GCGAGGAGAAGCAGTTCCGTTGCA..... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGAGGAGAAGCAGTTCCGTTGCA..... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................GCGAGGAGAAGCAGTTCC........... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................CTGCCGCACTATTGCGAGGAGAAGCA................ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................GCACTATTGCGAGGAGAAGCA................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................CGTACGTTTTAAACTTAAATGT..................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................TTCTGGGTTGACAGCACAAAGC.......................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................ATCTCGAAGCCTGCCGAACT................................ 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0
........................................ACATTGTGCGTTGCGGTT................................................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0
........................................TCCTTGTGTGGTGCGGTT................................................................................................................................................................................................. 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 1
...........................................TTGTGTGGCGAGGTTAACC............................................................................................................................................................................................. 19 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0
................................................................CGTAAGGTTTCAACTTAGA........................................................................................................................................................................ 19 3 18 0.06 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TCCAGAATTTCGAACAGTTGCGGAGGCTGGCGAGCGTGGGTGTAACACACCACGCCAATTGCTCGCTTTCAAAAGTTGAATTTACAATCAATACTTAAACTAATCCGGGACAACAAACCAAGCGGCGTCATAGAGTCGGACTAATTAATTATACGTAAACTAAACAGTTTTATATAAATAAAATAAGAAGACACAAATGTCGAGTTTCGGACGGCGTGATAACGCTCCTCTTCGTCAAGGCAACGTCCCTC
**************************************************.(((((....(((((.(((.....((((.......(((((((......))))))).....))))))).))))))))))(((...(((...((.(((..((((((..(((((....))))).))))))....))).))..)))....)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M028
head
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060689
160x9_testes_total
 SRR060654
160x9_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060687
9_0-2h_embryos_total
.................................................................................................................................................................................................CAAATGTCGAGTTTAGGTTG...................................... 20 3 20 0.45 9 4 0 0 0 1 0 0 0 1 1 1 1
..............................................................................................................................................................................................ACTCAAATGTCGAGTTTAGG......................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGATGCCTAGTTTCGGACG...................................... 19 3 15 0.27 4 0 0 0 0 0 2 2 0 0 0 0 0
.........................................................................................................................................................................................................................GATAATGCCCCTCTTGGTC............... 19 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGGCTCTTCTTCATCAAGGC.......... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
.................TTGCGGAGGGTCCCGAGCG....................................................................................................................................................................................................................... 19 3 10 0.20 2 1 0 0 0 1 0 0 0 0 0 0 0
........TTAGAACATTTGCGGAGGCC............................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
...............AGTCCCGGAAGCTGGCGAGC........................................................................................................................................................................................................................ 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGATAAAGCTCCTCTTGGT................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:6981266-6981516 - dvi_4253 AGGTCT---TAAAGCTTGTCAACG-----CCTCC-----------------------------------------------------------------------------GAC-----------------------------------CGCTCG--------------------CAC--CCACATTGTGTGG-------------------------------------------------------------------------TGCGGTTAACGAGCGAAAGTTTTCAACTTAAATG-TTAGTTATGAATTTGA-TTAGGCC----CTGTTGT-------------------------------------------------------------------------------------------------------------------------------TTGGTTCGCCGCAGTATCT-CAGCCTGATTAATTAATAT---------------GCATTTGATTT-------GTCAAAATATAT------------------------------------------------TTATTTTATTCTTCTGTGTTTACAGCTCAAAGCCTGCCGCACTATTGCGAG------GAGAAGCAGTTCCGTTGCAGGGAG
droMoj3 scaffold_6540:25635547-25635877 + AGGTCT---TAAAGCTTGTCAACG-C----TGGA---------------------GA--GC--CACAAAAGCCGC--CTCTCACCCAGCCCCGCCCTCT---CCCCCCA-CCAC-----------------------T-AACAA----------A--------------------A----TTTT-----AATGTGCGCCGTTGTGCGGTTCGCA---------------------------------------------------GCGCTGTTAACGAGCCAAAGTTTTCAACTTAAATG-TTAGTTATGAATTTGA-TTAGGCC----A----------------------------------------------------------------------------------------------------------------------------------------------CGCAGAAACG-GAACTTAATGAATTAATAT---------------GCATTTGATTT-------ATCA---TATATCTTCTCTCCTACTCACACTCTCTTACTCACTCTCTCTCTCTCTCTTTCTTATTTTC------------TCCAGCTCAAAGCCTGCCACACTATTGCGAT------GAGAAACAGTTCCACTGCAAGCAG
droGri2 scaffold_15074:5824375-5824706 + AGGTCT---TAAAGCCTGTCAACG-C----GACA---------------------GCGGGA--AACCAAAACCCC-TTTACCCAAAAT----------------------------------------------------------------------------------------------GT-----AATG--CGCCATTGTGCGGTTCGCTTTGGTTTTTGGATCAGTTTGGTTTGGTTGGGTTTGG----TTTGGTTTGGTTCGCTGTTAACGAGCTAAAGTTTTCAACTTAAATG-TTAGTTATGAATTTTA-TTAGGCC----TCTGT----------------------------------------------------------------------------------TGTGTTGC-----T-TTTGTT-GTTCTTCTTGAATTATATAGTTT-------TGGCCGCAAAATTT-CCACTCAATTAATTAT-----------TTAATTTGTTTTTGATTT-------CTCA-----------------------------------------------------------------------------ACAGCTCAAAGCCTACCGCATTACTGCGAG------GAGAAACAATTTCGCTGCAAC---
droWil2 scf2_1100000004943:14491843-14492105 + AGGGTTTCCTGAGCCTTGTCAACG-A----CTCA---------------------AATTATACCC-CAAAATCT----------------------------TC-------------------------------------------------CC--------------------CAA--CCAC-----AGTA---------------------------------------TG--------------------------------AAATTTTAACTACCTAAAGTTTTCAACTTAAGTTTTTAGTTATGAATTTGA-TTAGGCT----TCC---TTGG--------------------------------------------------------------------------------CTCTT--------------GATAGCATTCAGTT---------------------------TTGTCAACTTAATTAATTAATATGTATGAATTGAA-------TTCATTCTTCTTCTCTCG--------------------------------------------------------------------------ATTTTAGCTTTATCTCTGCCCCAATTTTGCGATACGGAACAAAAGCAATTCCAATGCCGT-AA
dp5 2:23544613-23544923 + GGGTTT---TAAACCTTGTCAACAGAACGCCTT--------------------------------------------CTCT---------------------------------------TCCTCT------CC-------------------CT--------------------CTC--ACTC-----TGTG---------------------------------------TG---------TGT-------GTGTGTGTATGTTTGTGCTTAACGATCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGC---------------------------TCCAAC--CA-------ACGGCCTCTTGGCCTCTTTGGGCCGCCTTGGAC--------------CCATCTTGCATCCCC-TGTGGG-----GTGTTTAATTATA--GTCTGTGCGGCTAACCCAAAGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCTCAAAGCATACCCAACTACTGCGAG------GAGAAGCAATTCCAATGCGCC---
droPer2 scaffold_3:6316555-6316878 + GGGTTT---TAAACCTTGTCAACAGAACGCCTT--------------------------------------------CTCTTTCTC---------------------------------TTCCTCT------CC-------------------CT--------------------CTC--CCTC-----TGTG---------------------------------------TG---------TGTGTGGTGTGTGTATGTATGTTTGTGCTTAACGATCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGC---------------------------TCCAAC--CA-------ACGGCCTCTTGGCCTCTTTGGGCCGCCTTGGAC--------------CCATCTTGCATCCCC-TGTGGG-----GTGTTTAATTATA--GTCTGTGCGGCTAACCCAAAGATGT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCTCAAAGCATACCCAACTACTGCGAG------GAGAAGCAATTCCAATGCGCC---
droAna3 scaffold_13340:11582076-11582384 + GGGTTT---TGAGGCTTGTCAACA-GACGCCTTC---------------------------------------------CTCCACGC-----CC----------CTTCC-AC-C---CACGCCACT------CTTC-T----------GGTCTCA--------------------CTT--TCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGTC----CCCCCAC--------CCAACA-TCCCAG--GAGAAAGGC-CGCC----------------------------G----GTC---CGGTCGTCTCCT--------------GTTCATGTTTAATTATA--GTCT--GCGGCTAACCCGAGAATTC-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCTCAAAGCCTGCGGACGGAGTGCGGA------GAAAAGCAGTTCCAGTGTTCCCC-
droBip1 scf7180000396691:488553-488837 + GGGTTT---TGAGGCTTGTCAACA-GACGCCTTCGCCACCCCTCCACACCACTAC----------------------------------------------------------------------------------------------GTCTCA--------------------CTT--TCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCGGCCCCTCCGATC----------------CCAG--GG----GGC-CGGC----------------------------C----GTC---CGGTCGTCTCCT--------------GTTCATGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTC-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCTCACAGCCTGTCGACGGAGTGCGAT------GAAAAGCAGTTTCAGTGC------
droKik1 scf7180000301923:372959-373239 - GGGTTT---TAAGGCTTGTCAACA-GACGCCTT-------------------------------------------------------------------------------------------------------------CATTGCCATCTCCGCCCAGATCCTGCCGCCCTCCTTCGTCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CACCCGGGGGAACG---AC---------------------CA-----------------------------------------C---CGACTC-C--------------GCTCGTGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTC-CAACTTAATTAATTAATAT---------------GCATTTGATTC-------C-------------------------------------------------------------------------------TGCAGCGACCAGCCTTTCCAACTCGTGCGAG------GAGAAGCAGTTCCAGTGCTCC---
droFic1 scf7180000454055:1466402-1466692 - GGGTTT---TAAGGCTTGTCAACA-AACGCCTTC--------------------------------------------CC-CCA-------------------T-TTTC-CCAC-----------TTACCAACTTGGGAAGCCATCGCTATCCCT--------------------GCT--CCTT-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCTGTGGGACG---AGAC--C---------------------------------------------------------------CGACTACG--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCACAGCCTGTCCACCTACTGCAGT------GAGAAGCAGTTCCAGTGCTCC---
droEle1 scf7180000491261:1196733-1197033 + GGGTTT---TAAGGCTTGTCAACA-AACGCCTTC--------------------------------------------CG---------------------------------TCTTTATTCCACT------CCTG-T-GACCACCGCAATCTTC--------------------CTT--CTTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTATGCC----CTCCCGTTGGGACTACTAGACCCCCAAC--T--------TCGGT----------------------------G---------GTCGTCGTCTCCC--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCGGTCTGACCAACTACTGCGAT------GAAAAGCAGTTCCAGTGC------
droRho1 scf7180000780007:440787-441083 - GGGTTT---TAAGGCTTGTCAACA-AACGCCTC--------------------------------------------TCA---------------------------------TCCTCATTCCTCT------CCTC-T-AACCATCGCTATCTCT--------------------GTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACG---AGAC-TTCAAC--T--------ACGGT----------------------------C---------GCCCCCTTCTCCC--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCAGTTTACCCAACTTCTGCGAT------GAGAAGCAGTTCCATTGC------
droBia1 scf7180000302136:2407003-2407325 - AGGGTT---TTAGGCTTGTCAACA-AACGCCTTGA------------------ACGG---CTCC-----------TTTTCACCACTTT----CC-----CCTAT-TTTCCCGTC-----------------------T-AACCATCGCCATCTCG--------------------CCT--CCTC-----GGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACA---AAAC-TCCGAC--TT-------ACGGC----------------------------C---------GCCGCCGTCTCCC--------------ATTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATCT-CAACTTAATTAATTAACAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCGGCCTGTCCAACTACTGCGAC------GAGAAGCAGTTCCAGTGCTCCTCG
droTak1 scf7180000415367:895152-895471 + GGGTTT---TAAGGCTTGTCAACA-AGCGCCTTA--------------------CGATCTTACCA-CAAAACCC---TGG------------CC-----C------ATC-CCAT---------------------C-T-AACCATTGCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACA---AAAC-TCCAAC--TT-------ACGGTC---------------------------C---------GCCGTCGTCTCCC--------------ATTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTTCCAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCAGTCTGTCCAACCACTGCGAT------GAGAAGCAGTTCCAGTGCTCCACG
droEug1 scf7180000409682:1070793-1071087 + GGGTTT---TAAGGCTTGTCAACA-AA-GCCTT---------------------------------------------------------------------------G-CCAC-----------------------CAAGCCATCGCCATCTCA--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACA---AAAC-TCCAAC--CG-------TTGGT----------------------------CGCCGTCA---TCGTCGTCTCCC--------------ATTTCCGTTTAATTATA--GTCT--GCGGCTAACCCAAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCCCTCAGTCTGTCCTACAAGTGCGAC------GAGAAGCAGTTCCAGTGCTCCGAC
dm3 chr3R:21548232-21548545 - GGGTTT---TAAGGCTTGTCAACA-AACGCCTT--------------------------------------------TTCTCCACAATTTC-CC-----CCTCCCTTTT-CGAC-----------------------C-GAGCATCGCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACGTACAAAC-TCCAAG--CA-------CTGGT----------------------------C---------GCCGACGTCTCCC--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCTCTCGGTCTGAGCAACTACTGCGAT------GAGAAGCAGTTCCAGTGCTCC---
droSim2 3r:21062690-21063004 - GGGTTT---TAAGGCTTGTCAACA-AACGCCTT--------------------------------------------TTCTCCACAATTCC-CCCCTCT---CTCTTTC-CCAC-----------------------C-AACCATCGCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACGCACAAAC-TCCAAC--C--------AGGGT----------------------------C---------GCCGACGTCTCCC--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCGGTCTGAGCAACTACTGCGAG------GAGAAGCAGTTCCAGTGCTCC---
droSec2 scaffold_13:345312-345627 - GGGTTT---TAAGGTTTGTCAACA-AACGCCTT--------------------------------------------TTCTCCACAATTCCTCCCCTCT---CTCTTTC-CCGC-----------------------C-AACCATCGCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCATAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACGCACAAAC-TCCAAG--C--------AGGGT----------------------------C---------GCCGCCGTCTCCC--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCGGTCTGAGCAACTACTGCGAG------GAGAAGCAGTTCCAGTGCTCC---
droYak3 3R:24920580-24920904 + GGGTTT---TAAGGCTTGTCAACA-AACGCCTT--------------------------------------------TTCTCCACAAT-CC-CC----------CCTCC-GCAG-----------------------TAAACCATCGCTATCTCA--------------------CTG--GCTC-----AGTG---------------------------------------TG--------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTAAACAGGCC----CTCCCATTGGGATGTGAAAAC-TCCAACACC--------ACGGT----------------------------C------ATCGCCGCCGTCTCCC-----CGTTTTTCGCTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCGGTCTGTCCAACTACTGCGAT------GAGAAGCAGTTCCAGTGCTCC---
droEre2 scaffold_4820:6490336-6490637 + GGGTTT---TAAGGCTTGTCAACA-AACGCCTT--------------------------------------------TTC-CC--------------GT---CCCTTTC-GCGC-----------------------CAGACCATCGCTATCTCA--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGACC----CTCCCATTGGGATGTGCCAAC-TCCAAC--C--------GCGGT----------------------------C---------GCCGCCGTCTCCC--------------ATTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TCCAGCGCTCGGTCTGACCAACTACTGCGAT------GAGAAGCAGTTCCAGTGCTCC---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGGTCT---TAAAGCTTGTCAACG-----CCTCC-----------------------------------------------------------------------------GAC-----------------------------------CGCTCG--------------------CAC--CCACATTGTGTGG-------------------------------------------------------------------------TGCGGTTAACGAGCGAAAGTTTTCAACTTAAATG-TTAGTTATGAATTTGA-TTAGGCC----CTGTTGT-------------------------------------------------------------------------------------------------------------------------------TTGGTTCGCCGCAGTATCT-CAGCCTGATTAATTAATAT---------------GCATTTGATTT-------GTCAAAATATAT------------------------------------------------TTATTTTATTCTTCTGTGTTTACAGCTCAAAGCCTGCCGCACTATTGCGAG------GAGAAGCAGTTCCGTTGCAGGGAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTATTGCGAG------GAGAAGC.................2012.002000000000000010000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG------GAGAAGCAGTTCCGTTGCA.....2211.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAG------GAGAAGCAGTTCCGT.........2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTATTGCGAG------GAGAAG..................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAGTTCCGTTGCAGGG..2011.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAG------GAGAAGCAGTTCCGTTGCA.....2411.001000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAG------GAGAAGCAGTTCCGTTGCA.....2311.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAG------GAGAAGCAGTTCC...........1811.001000000000100000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGCACTATTGCGAG------GAGAAGCA................2611.001000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTATTGCGAG------GAGAAGCA................2111.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
AGGTCT---TAAAGCTTGTCAACG-C----TGGA---------------------GA--GC--CACAAAAGCCGC--CTCTCACCCAGCCCCGCCCTCT---CCCCCCA-CCAC-----------------------T-AACAA----------A--------------------A----TTTT-----AATGTGCGCCGTTGTGCGGTTCGCA---------------------------------------------------GCGCTGTTAACGAGCCAAAGTTTTCAACTTAAATG-TTAGTTATGAATTTGA-TTAGGCC----A----------------------------------------------------------------------------------------------------------------------------------------------CGCAGAAACG-GAACTTAATGAATTAATAT---------------GCATTTGATTT-------ATCA---TATATCTTCTCTCCTACTCACACTCTCTTACTCACTCTCTCTCTCTCTCTTTCTTATTTTC------------TCCAGCTCAAAGCCTGCCACACTATTGCGAT------GAGAAACAGTTCCACTGCAAGCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATTGCGAT------GAGAAACAG...............2011.001000001
droGri2
AGGTCT---TAAAGCCTGTCAACG-C----GACA---------------------GCGGGA--AACCAAAACCCC-TTTACCCAAAAT----------------------------------------------------------------------------------------------GT-----AATG--CGCCATTGTGCGGTTCGCTTTGGTTTTTGGATCAGTTTGGTTTGGTTGGGTTTGG----TTTGGTTTGGTTCGCTGTTAACGAGCTAAAGTTTTCAACTTAAATG-TTAGTTATGAATTTTA-TTAGGCC----TCTGT----------------------------------------------------------------------------------TGTGTTGC-----T-TTTGTT-GTTCTTCTTGAATTATATAGTTT-------TGGCCGCAAAATTT-CCACTCAATTAATTAT-----------TTAATTTGTTTTTGATTT-------CTCA-----------------------------------------------------------------------------ACAGCTCAAAGCCTACCGCATTACTGCGAG------GAGAAACAATTTCGCTGCAAC---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGGGTTTCCTGAGCCTTGTCAACG-A----CTCA---------------------AATTATACCC-CAAAATCT----------------------------TC-------------------------------------------------CC--------------------CAA--CCAC-----AGTA---------------------------------------TG--------------------------------AAATTTTAACTACCTAAAGTTTTCAACTTAAGTTTTTAGTTATGAATTTGA-TTAGGCT----TCC---TTGG--------------------------------------------------------------------------------CTCTT--------------GATAGCATTCAGTT---------------------------TTGTCAACTTAATTAATTAATATGTATGAATTGAA-------TTCATTCTTCTTCTCTCG--------------------------------------------------------------------------ATTTTAGCTTTATCTCTGCCCCAATTTTGCGATACGGAACAAAAGCAATTCCAATGCCGT-AASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCGATACGGAACAAAAGC.................2111.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGCCCCAATTTTGCGATACGGAAC.......................2711.00101000
dp5
GGGTTT---TAAACCTTGTCAACAGAACGCCTT--------------------------------------------CTCT---------------------------------------TCCTCT------CC-------------------CT--------------------CTC--ACTC-----TGTG---------------------------------------TG---------TGT-------GTGTGTGTATGTTTGTGCTTAACGATCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGC---------------------------TCCAAC--CA-------ACGGCCTCTTGGCCTCTTTGGGCCGCCTTGGAC--------------CCATCTTGCATCCCC-TGTGGG-----GTGTTTAATTATA--GTCTGTGCGGCTAACCCAAAGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCTCAAAGCATACCCAACTACTGCGAG------GAGAAGCAATTCCAATGCGCC---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCAACTACTGCGAG------GA......................2013.0030300000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CTTGGAC--------------CCATCTTGCATCCCC-T....................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACCCAACTACTGCGAG------GA......................2211.0010100000000
droPer2
GGGTTT---TAAACCTTGTCAACAGAACGCCTT--------------------------------------------CTCTTTCTC---------------------------------TTCCTCT------CC-------------------CT--------------------CTC--CCTC-----TGTG---------------------------------------TG---------TGTGTGGTGTGTGTATGTATGTTTGTGCTTAACGATCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGC---------------------------TCCAAC--CA-------ACGGCCTCTTGGCCTCTTTGGGCCGCCTTGGAC--------------CCATCTTGCATCCCC-TGTGGG-----GTGTTTAATTATA--GTCTGTGCGGCTAACCCAAAGATGT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCTCAAAGCATACCCAACTACTGCGAG------GAGAAGCAATTCCAATGCGCC---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACCCAACTACTGCGAG------GA......................2211.001010000
droAna3
GGGTTT---TGAGGCTTGTCAACA-GACGCCTTC---------------------------------------------CTCCACGC-----CC----------CTTCC-AC-C---CACGCCACT------CTTC-T----------GGTCTCA--------------------CTT--TCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGTC----CCCCCAC--------CCAACA-TCCCAG--GAGAAAGGC-CGCC----------------------------G----GTC---CGGTCGTCTCCT--------------GTTCATGTTTAATTATA--GTCT--GCGGCTAACCCGAGAATTC-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCTCAAAGCCTGCGGACGGAGTGCGGA------GAAAAGCAGTTCCAGTGTTCCCC-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGGA------GAAAAGCAGTTCC...........2111.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGGA------GAAAAGCAGTTCCA..........2211.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGA------GAAAAGCAGTTCCAGTG.......2311.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAAGCCTGCGGACGGA.....................................2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCTGCGGACGGAGTGCG................................2111.001000001
droBip1
GGGTTT---TGAGGCTTGTCAACA-GACGCCTTCGCCACCCCTCCACACCACTAC----------------------------------------------------------------------------------------------GTCTCA--------------------CTT--TCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCGGCCCCTCCGATC----------------CCAG--GG----GGC-CGGC----------------------------C----GTC---CGGTCGTCTCCT--------------GTTCATGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTC-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCTCACAGCCTGTCGACGGAGTGCGAT------GAAAAGCAGTTTCAGTGC------SizeHit CountTotal NormTotal
No Reads
droKik1
GGGTTT---TAAGGCTTGTCAACA-GACGCCTT-------------------------------------------------------------------------------------------------------------CATTGCCATCTCCGCCCAGATCCTGCCGCCCTCCTTCGTCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CACCCGGGGGAACG---AC---------------------CA-----------------------------------------C---CGACTC-C--------------GCTCGTGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTC-CAACTTAATTAATTAATAT---------------GCATTTGATTC-------C-------------------------------------------------------------------------------TGCAGCGACCAGCCTTTCCAACTCGTGCGAG------GAGAAGCAGTTCCAGTGCTCC---SizeHit CountTotal NormTotal
No Reads
droFic1
GGGTTT---TAAGGCTTGTCAACA-AACGCCTTC--------------------------------------------CC-CCA-------------------T-TTTC-CCAC-----------TTACCAACTTGGGAAGCCATCGCTATCCCT--------------------GCT--CCTT-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCTGTGGGACG---AGAC--C---------------------------------------------------------------CGACTACG--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCACAGCCTGTCCACCTACTGCAGT------GAGAAGCAGTTCCAGTGCTCC---SizeHit CountTotal NormTotal
No Reads
droEle1
GGGTTT---TAAGGCTTGTCAACA-AACGCCTTC--------------------------------------------CG---------------------------------TCTTTATTCCACT------CCTG-T-GACCACCGCAATCTTC--------------------CTT--CTTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTATGCC----CTCCCGTTGGGACTACTAGACCCCCAAC--T--------TCGGT----------------------------G---------GTCGTCGTCTCCC--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCGGTCTGACCAACTACTGCGAT------GAAAAGCAGTTCCAGTGC------SizeHit CountTotal NormTotal
No Reads
droRho1
GGGTTT---TAAGGCTTGTCAACA-AACGCCTC--------------------------------------------TCA---------------------------------TCCTCATTCCTCT------CCTC-T-AACCATCGCTATCTCT--------------------GTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACG---AGAC-TTCAAC--T--------ACGGT----------------------------C---------GCCCCCTTCTCCC--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCAGTTTACCCAACTTCTGCGAT------GAGAAGCAGTTCCATTGC------SizeHit CountTotal NormTotal
No Reads
droBia1
AGGGTT---TTAGGCTTGTCAACA-AACGCCTTGA------------------ACGG---CTCC-----------TTTTCACCACTTT----CC-----CCTAT-TTTCCCGTC-----------------------T-AACCATCGCCATCTCG--------------------CCT--CCTC-----GGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACA---AAAC-TCCGAC--TT-------ACGGC----------------------------C---------GCCGCCGTCTCCC--------------ATTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATCT-CAACTTAATTAATTAACAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCGGCCTGTCCAACTACTGCGAC------GAGAAGCAGTTCCAGTGCTCCTCGSizeHit CountTotal NormTotal
No Reads
droTak1
GGGTTT---TAAGGCTTGTCAACA-AGCGCCTTA--------------------CGATCTTACCA-CAAAACCC---TGG------------CC-----C------ATC-CCAT---------------------C-T-AACCATTGCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACA---AAAC-TCCAAC--TT-------ACGGTC---------------------------C---------GCCGTCGTCTCCC--------------ATTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTTCCAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCAGTCTGTCCAACCACTGCGAT------GAGAAGCAGTTCCAGTGCTCCACGSizeHit CountTotal NormTotal
No Reads
droEug1
GGGTTT---TAAGGCTTGTCAACA-AA-GCCTT---------------------------------------------------------------------------G-CCAC-----------------------CAAGCCATCGCCATCTCA--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACA---AAAC-TCCAAC--CG-------TTGGT----------------------------CGCCGTCA---TCGTCGTCTCCC--------------ATTTCCGTTTAATTATA--GTCT--GCGGCTAACCCAAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCCCTCAGTCTGTCCTACAAGTGCGAC------GAGAAGCAGTTCCAGTGCTCCGACSizeHit CountTotal NormTotal
No Reads
dm3
GGGTTT---TAAGGCTTGTCAACA-AACGCCTT--------------------------------------------TTCTCCACAATTTC-CC-----CCTCCCTTTT-CGAC-----------------------C-GAGCATCGCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACGTACAAAC-TCCAAG--CA-------CTGGT----------------------------C---------GCCGACGTCTCCC--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCTCTCGGTCTGAGCAACTACTGCGAT------GAGAAGCAGTTCCAGTGCTCC---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTGCGAT------GAGAAGC.................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCTGAGCAACTACTGCGAT------G.......................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCTGAGCAACTACTGCGAT------GA......................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGTCTGAGCAACTACTGCGA...............................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GAGAAGCAGTTCCAGTGCTCC---2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGCAACTACTGCGAT------GAGAAGCAGT..............2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAT------GAGAAGCAGTTCCA..........1921.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTACTGCGAT------GAGAAG..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCT--GCGGCTAACCCGAGGA.....................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGCGAT------GAGAAGCAGTTC............2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTGCGAT------GAGAAGCA................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................CTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TG........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................CGCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTG......................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTACTGCGAT------GAGAAGC.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTACTGCGAT------GAGAAGCAGT..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTACTGCGAT------GAGAAGC.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGTCTGAGCAACTACTGCGAT------GAG.....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................................................................................................................................................................................................................AACGAGCCAAAGTTTTCAACTTAAA..........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGTCTGAGCAACTACTGCGAT------GAGAA...................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TCGCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTGCGAT------GAGAAG..................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGTCTGAGCAACTACTGCGAT------GA......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCGGTCTGAGCAACTACTGCGA...............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................CTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TCGCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TG........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTGCGAT------GAGAAGCAGTTCCAGT........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................C-TCCAAG--CA-------CTGGT----------------------------C---------GCCGACG..................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTG......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTGCGAT------GAGAAGCAGTTC............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGAT------GAGAAGCAGTTC............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT--GCGGCTAACCCGAGGATTT-CAACT............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGTCTGAGCAACTACTGC.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTGCGAT------GAGAAGCA................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................................................................................................................................................................................................................................................................................................AACTTAAATT-TTAGTTATGAATTT.........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGT.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT------GAGAAGCAGTTCCAGTGC......2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAT------GAGAAGCAGTTCCAGTGC......2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT------GAGAAGCAGTTCCAG.........1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGGTTT---TAAGGCTTGTCAACA-AACGCCTT--------------------------------------------TTCTCCACAATTCC-CCCCTCT---CTCTTTC-CCAC-----------------------C-AACCATCGCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACGCACAAAC-TCCAAC--C--------AGGGT----------------------------C---------GCCGACGTCTCCC--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCGGTCTGAGCAACTACTGCGAG------GAGAAGCAGTTCCAGTGCTCC---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTGAGCAACTACTGCGAG------G.......................2312.00202000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCTGAGCAACTACTGCGAG------GAGA....................2711.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGAG------GAGAAGCA................1611.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTGAGCAACTACTGCGAG------GA......................2411.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCAACTACTGCGAG------GA......................2011.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGCGAG------GAGAAGCAGT..............1911.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA--GTCT--GCGGCTAAAA...........................................................................................................................................................................................................1870.14100000000001000000
droSec2
GGGTTT---TAAGGTTTGTCAACA-AACGCCTT--------------------------------------------TTCTCCACAATTCCTCCCCTCT---CTCTTTC-CCGC-----------------------C-AACCATCGCTATCTCG--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCATAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGGCC----CTCCCATTGGGACGCACAAAC-TCCAAG--C--------AGGGT----------------------------C---------GCCGCCGTCTCCC--------------GTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCGGTCTGAGCAACTACTGCGAG------GAGAAGCAGTTCCAGTGCTCC---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GGGTTT---TAAGGCTTGTCAACA-AACGCCTT--------------------------------------------TTCTCCACAAT-CC-CC----------CCTCC-GCAG-----------------------TAAACCATCGCTATCTCA--------------------CTG--GCTC-----AGTG---------------------------------------TG--------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTAAACAGGCC----CTCCCATTGGGATGTGAAAAC-TCCAACACC--------ACGGT----------------------------C------ATCGCCGCCGTCTCCC-----CGTTTTTCGCTTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TGCAGCGCTCGGTCTGTCCAACTACTGCGAT------GAGAAGCAGTTCCAGTGCTCC---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGTCCAACTACTGCGAT------GA......................2311.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAT------GAGAAGCAGTTCCAGT........2121.00200000020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT------GAGAAGCAGTTCCAGTGC......2121.00200000020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAT------GAGAAGCAGTTCCAG.........1920.50100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT------GAGAAGCAGTTCCAGT........1920.50100000010000
droEre2
GGGTTT---TAAGGCTTGTCAACA-AACGCCTT--------------------------------------------TTC-CC--------------GT---CCCTTTC-GCGC-----------------------CAGACCATCGCTATCTCA--------------------CTT--CCTC-----AGTG-------------------------------------------------------------------------TGTGCTTAACGAGCCAAAGTTTTCAACTTAAATT-TTAGTTATGAATTTTA-TTAGACC----CTCCCATTGGGATGTGCCAAC-TCCAAC--C--------GCGGT----------------------------C---------GCCGCCGTCTCCC--------------ATTTCCGTTTAATTATA--GTCT--GCGGCTAACCCGAGGATTT-CAACTTAATTAATTAATAT---------------GCATTTGATTT---------------------------------------------------------------------------------------TCCAGCGCTCGGTCTGACCAACTACTGCGAT------GAGAAGCAGTTCCAGTGCTCC---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAACTACTGCGAT------GAGAAGC.................2312.0020002000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACCAACTACTGCGAT------GAGA....................2211.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTGCGAT------GAGAAG..................1811.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTACTGCGAT------GAGAAGCA................2111.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACCAACTACTGCGAT------GAGAAGC.................2511.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTACTGCGAT------GAGAAGC.................2011.0010000100

Generated: 05/16/2015 at 08:41 PM