ID:

dvi_4227

 Coordinate:

scaffold_12855:6855034-6855277 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_10149:4]; exon [dvir_GLEANR_10149:3]; CDS [Dvir\GJ10209-cds]; CDS [Dvir\GJ10209-cds]; intron [Dvir\GJ10209-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGCTGCTTAAATCTGATGGCACCATCAAGCGTGAACGCGATAGTAAGCTGTAAGTGCAAGAGAGGAGGCTCGGAAAAAGCCGATAGCGATAAGTAGGGCTCAACTGTAGATAGGTTATCAACATTTACTGAATGTTTAGATATTAGCTGAAGAAAACACTATTCACGGTAATATATGTTGGAATCTAAAATATTTAAACGTTCTAAGGAATGCTTTTAATGAGCTGTGTTGAATTGCATCGAATTTTAACGTTATTTACTAATTTGTTTTTAATTCTCATTTATTTTCCCCAGTTGTCATCACAATGCCAATGGTCGTTGCGTACACTGCTCGCCGCTGGAAC
**************************************************(((((((..((((.((((((.((..((((..((((.(((((.((((.((((((......((((...))))..(((((...(((((((((((((((....((....((((.((((......))))..))))....))...)))))))))))))))....))))).......)))))).))))..)))))))))..))))..))..............))))))..))))))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 M027
male body		 M028
head
 SRR060668
160x9_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 V116
male body		 M061
embryo
 SRR1106729
mixed whole adult body
 V053
head
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 SRR060681
Argx9_testes_total
.................................................................................................................................................................................................................................................................................................................ATGCCAATGGTCGTTGCGTACAC................ 23 0 1 3.00 3 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0
.AGCTGCTTAAATCTGATGGCACCATC............................................................................................................................................................................................................................................................................................................................. 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GCTGCTTAAATCTGATGGCACCATCA............................................................................................................................................................................................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TCTGATGGCACCATCAAGCGTGA..................................................................................................................................................................................................................................................................................................................... 23 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.AGCTGCTTAAATCTGATGGCACC................................................................................................................................................................................................................................................................................................................................ 23 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGCGTGAACGCGATAGTAAGCT...................................................................................................................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ATGCCAATGGTCGTTGCGTACA................. 22 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................GCCAATGGTCGTTGCGTACA................. 20 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..GCTGCTTAAATCTGATGGCACCA............................................................................................................................................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AAATCTGATGGCACCATCA............................................................................................................................................................................................................................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GCTTAAATCTGATGGCACCA............................................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................CAATGCCAATGGTCGTTGCGTACACT............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CGTGAACGCGATAGTAAGCTTT.................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................TTTGTCATCACAATGCCAAT............................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
CAGCTGCTTAAATCTGATGGCACC................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GCTGCTTAAATCTGATGGCACC................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTACACT............... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ATGCCAATGGTCGTTGCGTA................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTACA................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...CTGCTTAAATCTGATGGCACC................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTACAC................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................ACAATGCCAATGGTCGTTGCGTACACT............... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GCTTAAATCTGATGGCACC................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........ATCTGATGGCACCATCAAGCGTG...................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTACACTG.............. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CAGCTGCTTAAATCTGATGGCACCATCA............................................................................................................................................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TGCGTACACTGCTCGCCG....... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ATGCCAATGGTCGTTGCGTACACT............... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................TGGCACCATCAAGCGTGAACG.................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................TTTGTCATCACAATGCCAATGGTCGT......................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................CATCACAATGCCAATGGTCGTTGC...................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................CGTTGCGTACACTGCTCGCC........ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CATCAAGCGTGAACGCGAT.............................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................AATGGTCGTTGCGTACACTGC............. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........ATCTGATGGCACCATCAAGCGTGAACG.................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ATCAAGCGTGAACGCGATAG............................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................ACCATCAAGCGTGAACGCGATAGT........................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ATCTGATGGCACCATCAAGCGTGAACGC................................................................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GGCACCATCAAGCGTGAAC................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GCTGCTTAAATCTGATGGCA.................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................AATGCCAATGGTCGTTGCGTACA................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TGATGGCACCATCAAGCGTGAACGCG................................................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GCACCATCAAGCGTGAACGCGAT.............................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTACACG............... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............CTGATGGCACCATCAAGCGT....................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....GCTTAAATCTGATGGCACCATCA............................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................TGTCATCACAATGCCAATGGT............................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GGTCGTTGCGTACACTGCT............ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTA................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ATCAAGCGTGAACGCGATAGTAAGC....................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................ATGGCACCATCAAGCGTGAAC................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ATGCCAATGGTCGTTGCG..................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TAAATCTGATGGCACCATC............................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GCTGCTTAAATCTGATGGCACCATC............................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GCGTGAACGCGATAGTAAGCT...................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................AATGCCAATGGTCGTTGCGTACAC................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AAGCGTGAACGCGATAGTAAGC....................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TCAAGCGTGAACGCGATAGTA.......................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................CACAATGCCAATGGTCGTTGCGTACACT............... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....GCTTAAATCTGATGGCACCATC............................................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GCTTAAATCTGATGGCACCG............................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............GATGGCACCATCAAGCGTGAACGC................................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CTGATGGCACCATCAAGCGTGAACG.................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TGCTTAAATCTGATGGCACCA............................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TGCTTAAATCTGATGGCACCAT.............................................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................TGGTCGTTGCGTACACTGCTCGCC........ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................AAGCGTGAACGCGATAGTAAGCTTTGT.................................................................................................................................................................................................................................................................................................. 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AAATCTGATGGCACCATCAAGCGTG...................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGCGTGAACGCGATAGTAAGCTTTGC.................................................................................................................................................................................................................................................................................................. 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................CAATGCCAATGGTCGTTGCG..................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGCGTGAACGCGATAGTA.......................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GGCACCATCAAGCGTGAACGCGAT.............................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............CTGTAGGCACCATCAATCGT....................................................................................................................................................................................................................................................................................................................... 20 3 5 0.60 3 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1
.....................................................................................................................................................................................................................................................................................................TTTGTCATCACAATGCCAA................................ 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CTGTAGGCACCATCAAGC......................................................................................................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............CTGTGGGCACCATCAATCGT....................................................................................................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................GATTGGCTCTCAACATTTAC....................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................GATAGCGATAAGTAGTGTTT.................................................................................................................................................................................................................................................. 20 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GATCAACTGTAGTTAGGCT................................................................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CGATAAGTAGGGCGGGAC............................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................GATCAACTGTAGTTAGGC.................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTCGACGAATTTAGACTACCGTGGTAGTTCGCACTTGCGCTATCATTCGACATTCACGTTCTCTCCTCCGAGCCTTTTTCGGCTATCGCTATTCATCCCGAGTTGACATCTATCCAATAGTTGTAAATGACTTACAAATCTATAATCGACTTCTTTTGTGATAAGTGCCATTATATACAACCTTAGATTTTATAAATTTGCAAGATTCCTTACGAAAATTACTCGACACAACTTAACGTAGCTTAAAATTGCAATAAATGATTAAACAAAAATTAAGAGTAAATAAAAGGGGTCAACAGTAGTGTTACGGTTACCAGCAACGCATGTGACGAGCGGCGACCTTG
**************************************************(((((((..((((.((((((.((..((((..((((.(((((.((((.((((((......((((...))))..(((((...(((((((((((((((....((....((((.((((......))))..))))....))...)))))))))))))))....))))).......)))))).))))..)))))))))..))))..))..............))))))..))))))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 V047
embryo
 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 SRR060689
160x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
..................................................................................................................................................................................................................................................................................................................ACGGTTACCAGCAACGCATG.................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAAATTGCTAGATTCCTTAC................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TTCCAGCAACGCATGTGACGAGC.......... 23 1 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TAGAAATTTGCAAGGTTCCGT..................................................................................................................................... 21 3 4 0.50 2 0 0 0 2 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................CAAGGCATGTGACGAGAG......... 18 2 3 0.33 1 0 0 0 0 1 0 0 0
.............................................................................................................................ACTGACTTACAAATCTATTATA..................................................................................................................................................................................................... 22 3 8 0.13 1 0 0 0 0 0 1 0 0
.......................GTAGTGCGTACTTGCGCGA.............................................................................................................................................................................................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 0 0 1 0
..............................................................................................................AATCCAATAGTAGTAATTG....................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:6854984-6855327 - dvi_4227 C-AGCTGCTTAAATCTGATGGCACCATCAAGCGTGAACGCGATAGTAAGCTGTAAGTGCAAGAGAGGAGGCTCGGAAAAAGCCGATAGCGATAAGTAGGGCTCAACTGTAGATAGGTTATCAACATTTACTGAATGTTTAGATATTAGCTGAAGAAAACACTATTCACGGTAATATATGTTGGAATCTAAAATATTTAAACGTTCTAAGGAATGCTTTTAATGAGCTGTGTTGAATTGCATCGAATTTTAACGTTATTTACTAATTTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTC----------------------TCATTTATTT--TCCCCAGTTGTCATCACAATGCCAATGGTCGTTGCGTACACTGCTCGCCGCTGGAAC
droMoj3 scaffold_6540:25757906-25758044 + T-AG-----------------------------------------TAAGCTGTAAGTT----------------------------------------------------------------------------------GATTACAGCCGAAGTAAA-----------------------------------------------------------------------------------------------------ATTATTTTATAAAAGAATACTAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTACT-TTCC----------------------TCATTTAATT--TGCATAGTTGTCATCACAATGCCAATGGTCGTTGCGTTCATTGCTCTCCGTTGGAAC
droGri2 scaffold_14906:2998276-2998331 - C-AGCTGCTCAAATCAAATGGCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCAATCGTGAGCGCGATGCGAA----------------------GCTG-TAAGT
droWil2 scf2_1100000004943:14601383-14601463 + T-TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGATTA----------------------TCGTTTCGAT--TTTGCAGTTGTCATCATAATGCCAATGGACGTTGTGTTCACTGCTCAGCATTGGAAC
dp5 2:21197100-21197151 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCCATCACAATGCCAATGGCCGTTGCGTTCATTGCTCGCCGCTGGAAC
droPer2 scaffold_3:3972555-3972619 - A-TCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTA--ACTAAAGCTGCCATCACAATGCCAATGGCCGTTGCGTTCATTGCTCGCCGCTGGAAC
droAna3 scaffold_13340:3704646-3704727 - T-CATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-------------------------ATCTT-A--T--CTTTCAGCTGCCACCACAACGCGAACGGTCGTTGTGTCCACTGCTCCGCCCTGGAGC
droBip1 scf7180000396712:648964-649041 + A-TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACC-----------------------ACCTTT---A--TTTTTAGGTGCCACCACAACGCAAATGGGCGTTGCGTCCACTGCTCCGCCCTGGAGC
droKik1 scf7180000302639:1587897-1587957 + A-TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTCTAGCTGCCATCATAATGCCAACGGCCGTTGCGTCCACTGCTCCGCACTGGAGC
droFic1 scf7180000454055:1364597-1364657 - A-TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CTTTCAGCTGCCATCACAATGCCAATGGTCGTTGCGTCCACTGCTCCGCCCTGGAGC
droEle1 scf7180000491280:3159041-3159433 - G-CTCTGAGCAAGGCAGATGGTACCATCAAGCGCGAACGCGATAGCAAACTGTAAGCTTTTGGG--G--TTTC-------------------------------------------------------------------TTTTAGCGCCTTAAAAAA-----------------------------------------------------------------------------------------------------ACCATGTCTTAAATGGAAACAATTTAAATTTTCCTTGAATTTTCAGTTTTCTGTACGTTTTAATTACGCTTTAAAAATAATTACACGCATATTTAATTAGATTTCTAAGTAATTCAGATAGATAATACAAGACATACTATGTTTTACCTGTGATATCAGACCACCTTTTTATAACGTCCACCGACTTTGTACTTACAAACCTGTTTACCATATCAGT-TGCCCAATCAGATAACTAATCAAACTATATT-G--T--CTTGCAGGTGCCATCACAATGCCAATGGCCGTTGCGTCCACTGCTCCGCACTGGAGC
droRho1 scf7180000779501:475736-475797 + TATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTGCAGGTGCCATCACAATGCCAACGGCCGTTGCGTCCACTGCTCCGCACTGGAGC
droBia1 scf7180000302136:2295761-2295822 - T-GTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--ATTGCAGTTGCCATCACAATGCCAACGGCCGCTGCGTGCACTGCTCCGCCCTGGAGC
droTak1 scf7180000415257:333702-333756 - G-CGCTGAGCAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGATGGCACCATCAAG-----------CGCGAACGCGATAGCAAGCTGTAAG
droEug1 scf7180000409682:1182548-1182614 + A-CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCTTGCAGTTGCCATCACAATGCCAACGGTCGTTGCGTCCACTGCTCCGCCCTGGAGC
dm3 chr3R:21448563-21448623 - A-CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTGTAGGTGCCACCACAATGCCAACGGCCGTTGCGTTCACTGCTCCGCACTGGAGC
droSim2 3r:20960083-20960141 - T-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTAGGTGCCACCATAATGCCAACGGACGTTGCGTGCACTGCTCCTCACTGGAGC
droSec2 scaffold_13:235511-235569 - T-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTAGGTGCCACCATAATGCCAACGGACGTTGCGTGCACTGCTCCTCACTGGAGC
droYak3 3R:25025675-25025737 + A-TCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--T--TTTGTAGGTGCCACCACAATGCCAACGGCCGTTGCGTGCACTGCTCCGCACTGGAGC
droEre2 scaffold_4820:6593339-6593398 + T-T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTTTAGGTGCCACCACAATGCCAACGGCCGTTGCGTGCACTGCTCCGCACTGGAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
C-AGCTGCTTAAATCTGATGGCACCATCAAGCGTGAACGCGATAGTAAGCTGTAAGTGCAAGAGAGGAGGCTCGGAAAAAGCCGATAGCGATAAGTAGGGCTCAACTGTAGATAGGTTATCAACATTTACTGAATGTTTAGATATTAGCTGAAGAAAACACTATTCACGGTAATATATGTTGGAATCTAAAATATTTAAACGTTCTAAGGAATGCTTTTAATGAGCTGTGTTGAATTGCATCGAATTTTAACGTTATTTACTAATTTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTC----------------------TCATTTATTT--TCCCCAGTTGTCATCACAATGCCAATGGTCGTTGCGTACACTGCTCGCCGCTGGAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAATGGTCGTTGCGTACAC................2313.003010000000000000000010000000000000000000000000000000000000000100
..AGCTGCTTAAATCTGATGGCACCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003003000000000000000000000000000000000000000000000000000000000000
...GCTGCTTAAATCTGATGGCACCATCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002002000000000000000000000000000000000000000000000000000000000000
.............TCTGATGGCACCATCAAGCGTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002101000000000000000000000000000000000000000000000000000000000000
..AGCTGCTTAAATCTGATGGCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002001000000000000000010000000000000000000000000000000000000000000
.............................AGCGTGAACGCGATAGTAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002010000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAATGGTCGTTGCGTACA.................2212.002010000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATGGTCGTTGCGTACA.................2012.002011000000000000000000000000000000000000000000000000000000000000
...GCTGCTTAAATCTGATGGCACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002002000000000000000000000000000000000000000000000000000000000000
..........AAATCTGATGGCACCATCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002002000000000000000000000000000000000000000000000000000000000000
......GCTTAAATCTGATGGCACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCAATGGTCGTTGCGTACACT...............2611.001001000000000000000000000000000000000000000000000000000000000000
C-AGCTGCTTAAATCTGATGGCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...GCTGCTTAAATCTGATGGCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTACACT...............2311.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAATGGTCGTTGCGTA...................2011.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTACA.................2111.001001000000000000000000000000000000000000000000000000000000000000
....CTGCTTAAATCTGATGGCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTACAC................2211.001100000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGCCAATGGTCGTTGCGTACACT...............2711.001001000000000000000000000000000000000000000000000000000000000000
......GCTTAAATCTGATGGCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
............ATCTGATGGCACCATCAAGCGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTACACTG..............2411.001000000000000000001000000000000000000000000000000000000000000000
C-AGCTGCTTAAATCTGATGGCACCATCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTACACTGCTCGCCG.......1811.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAATGGTCGTTGCGTACACT...............2411.001000000000000000000000000000000000000000000000000000000000100000
..................TGGCACCATCAAGCGTGAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCACAATGCCAATGGTCGTTGC......................2411.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGCGTACACTGCTCGCC........2011.001000000000000000001000000000000000000000000000000000000000000000
........................CATCAAGCGTGAACGCGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTCGTTGCGTACACTGC.............2111.001000000000000000000000000000000000000000000000000000000000000010
............ATCTGATGGCACCATCAAGCGTGAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.........................ATCAAGCGTGAACGCGATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................ACCATCAAGCGTGAACGCGATAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
............ATCTGATGGCACCATCAAGCGTGAACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...................GGCACCATCAAGCGTGAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...GCTGCTTAAATCTGATGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAATGGTCGTTGCGTACA.................2311.001001000000000000000000000000000000000000000000000000000000000000
...............TGATGGCACCATCAAGCGTGAACGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
....................GCACCATCAAGCGTGAACGCGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTACACG...............2311.001100000000000000000000000000000000000000000000000000000000000000
..............CTGATGGCACCATCAAGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
......GCTTAAATCTGATGGCACCATCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATCACAATGCCAATGGT............................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGTTGCGTACACTGCT............1911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATGGTCGTTGCGTA...................1911.001000000000000000001000000000000000000000000000000000000000000000
.........................ATCAAGCGTGAACGCGATAGTAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.................ATGGCACCATCAAGCGTGAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAATGGTCGTTGCG.....................1811.001001000000000000000000000000000000000000000000000000000000000000
.........TAAATCTGATGGCACCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...GCTGCTTAAATCTGATGGCACCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
..............................GCGTGAACGCGATAGTAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAATGGTCGTTGCGTACAC................2411.001001000000000000000000000000000000000000000000000000000000000000
............................AAGCGTGAACGCGATAGTAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................TCAAGCGTGAACGCGATAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAATGCCAATGGTCGTTGCGTACACT...............2811.001000000000000000010000000000000000000000000000000000000000000000
......GCTTAAATCTGATGGCACCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......GCTTAAATCTGATGGCACCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
................GATGGCACCATCAAGCGTGAACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............CTGATGGCACCATCAAGCGTGAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.....TGCTTAAATCTGATGGCACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....TGCTTAAATCTGATGGCACCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCGTTGCGTACACTGCTCGCC........2411.001100000000000000000000000000000000000000000000000000000000000000
..........AAATCTGATGGCACCATCAAGCGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCAATGGTCGTTGCG.....................2011.001000000000000000001000000000000000000000000000000000000000000000
.............................AGCGTGAACGCGATAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................GGCACCATCAAGCGTGAACGCGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000010000000000000000000000000000000000000000000000
droMoj3
T-AG-----------------------------------------TAAGCTGTAAGTT----------------------------------------------------------------------------------GATTACAGCCGAAGTAAA-----------------------------------------------------------------------------------------------------ATTATTTTATAAAAGAATACTAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTACT-TTCC----------------------TCATTTAATT--TGCATAGTTGTCATCACAATGCCAATGGTCGTTGCGTTCATTGCTCTCCGTTGGAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAATGGTCGTTGCGTTCA.................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAATGGTCGTTGCG.....................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCATTGCTCTCCGTTGGA..2211.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGCTCTCCGTTGG...1911.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCGTTGCGTTCATTGCTCTCC........2511.001100000
droGri2
C-AGCTGCTCAAATCAAATGGCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCAATCGTGAGCGCGATGCGAA----------------------GCTG-TAAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
T-TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGATTA----------------------TCGTTTCGAT--TTTGCAGTTGTCATCATAATGCCAATGGACGTTGTGTTCACTGCTCAGCATTGGAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATGCCAATGGACGTTGT......................2114.00401300
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATCATAATGCCAATGGAC...........................2213.00330000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCCAATGGACGTTGTGTTCA.................2511.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCATAATGCCAATGGAC...........................2111.00110000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATGCCAATGGACGTTGTGTTCACT...............2811.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATAATGCCAATGGACGTTG.......................2311.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATGCCAATGGACGTTGTGTTCACC...............2811.00110000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATAATGCCAATGGACGTTGT......................2311.00100010
dp5
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCCATCACAATGCCAATGGCCGTTGCGTTCATTGCTCGCCGCTGGAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAATGCCAATGGCCGTTGC......................2312.0020110000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAATGGCCGTTGCGTTCA.................2212.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAATGGCCGTTGCGTTCATT...............2512.0021100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAATGCCAATGGCCGTTGCGTT...................2611.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATGGCCGTTGCGTTCATTG..............2411.0011000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGTTGCGTTCATTGCTC...........2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATGGCCGTTGCGTTCG.................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATGGCCGTTGCGTTCA.................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATGGCCGTTGCGTT...................1911.0010100000000
droPer2
A-TCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTA--ACTAAAGCTGCCATCACAATGCCAATGGCCGTTGCGTTCATTGCTCGCCGCTGGAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTTGCGTTCATTGCT............1811.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATGGCCGTTGCGTTCA.................1911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCGTTGCGTTCATTGCTCGCC........2511.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAATGGCCGTTGCGTTCA.................2211.001010000
droAna3
T-CATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-------------------------ATCTT-A--T--CTTTCAGCTGCCACCACAACGCGAACGGTCGTTGTGTCCACTGCTCCGCCCTGGAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTTGTGTCCACTGCTCCGCC.......2312.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGTTGTGTCCACTGCTCCGCC.......2412.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCGTTGTGTCCACTGCTCCGCCC......2811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAACGGTCGTTGTGTCCACTGC.............2511.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCGTTGTGTCCACTGCTCC..........2411.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCGTTGTGTCCACTGCTCCGCC.......2511.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGTTGTGTCCACTGCTCCGCCCT.....2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAACGGTCGTTGTGTC...................1811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAACGGTCGTTGTGTCCACTGCTCC..........2811.001000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTTGTGTCCACTGCTCC..........2011.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCGTTGTGTCCACTGCTC...........2211.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACAACGCGAACGGTCGTT........................2211.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGTCGTTGTGTCCACTGCTCC..........2511.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGTCCACTGCTCCGCCCTGG...2411.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAACGGTCGTTGTGTCCACT...............2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGAACGGTCGTTGTGTCCACTGC.............2611.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCGTTGTGTCCACTG..............2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGCGAACGGTCGTTGTGTCCA.................2511.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGTCGTTGTGTCCACTGCTCCGCC.......2811.001100000
droBip1
A-TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACC-----------------------ACCTTT---A--TTTTTAGGTGCCACCACAACGCAAATGGGCGTTGCGTCCACTGCTCCGCCCTGGAGCSizeHit CountTotal NormTotal
No Reads
droKik1
A-TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTCTAGCTGCCATCATAATGCCAACGGCCGTTGCGTCCACTGCTCCGCACTGGAGCSizeHit CountTotal NormTotal
No Reads
droFic1
A-TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CTTTCAGCTGCCATCACAATGCCAATGGTCGTTGCGTCCACTGCTCCGCCCTGGAGCSizeHit CountTotal NormTotal
No Reads
droEle1
G-CTCTGAGCAAGGCAGATGGTACCATCAAGCGCGAACGCGATAGCAAACTGTAAGCTTTTGGG--G--TTTC-------------------------------------------------------------------TTTTAGCGCCTTAAAAAA-----------------------------------------------------------------------------------------------------ACCATGTCTTAAATGGAAACAATTTAAATTTTCCTTGAATTTTCAGTTTTCTGTACGTTTTAATTACGCTTTAAAAATAATTACACGCATATTTAATTAGATTTCTAAGTAATTCAGATAGATAATACAAGACATACTATGTTTTACCTGTGATATCAGACCACCTTTTTATAACGTCCACCGACTTTGTACTTACAAACCTGTTTACCATATCAGT-TGCCCAATCAGATAACTAATCAAACTATATT-G--T--CTTGCAGGTGCCATCACAATGCCAATGGCCGTTGCGTCCACTGCTCCGCACTGGAGCSizeHit CountTotal NormTotal
No Reads
droRho1
TATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTGCAGGTGCCATCACAATGCCAACGGCCGTTGCGTCCACTGCTCCGCACTGGAGCSizeHit CountTotal NormTotal
No Reads
droBia1
T-GTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--ATTGCAGTTGCCATCACAATGCCAACGGCCGCTGCGTGCACTGCTCCGCCCTGGAGCSizeHit CountTotal NormTotal
No Reads
droTak1
G-CGCTGAGCAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGATGGCACCATCAAG-----------CGCGAACGCGATAGCAAGCTGTAAGSizeHit CountTotal NormTotal
No Reads
droEug1
A-CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCTTGCAGTTGCCATCACAATGCCAACGGTCGTTGCGTCCACTGCTCCGCCCTGGAGCSizeHit CountTotal NormTotal
No Reads
dm3
A-CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTGTAGGTGCCACCACAATGCCAACGGCCGTTGCGTTCACTGCTCCGCACTGGAGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGTTGCGTTCACTGCTCC..........2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGTTGCGTTCACTGCT............1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCCGTTGCGTTCACT...............1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAACGGCCGTTGCGTTC..................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGCCAACGGCCGTTGCGTTC..................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAACGGCCGTTGCGTT...................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAACGGCCGTTGCGTTCA.................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAACGGCCGTTGC......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGTTGCGTTCACTGCTCCGCACTGGA..3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAACGGCCGTTGCGTTC..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGTTGCGTTCACTGCTCT..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAACGGCCGTTGCGT....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGTTGCGTTCACTGCTCCGCAC......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAACGGCCGTTGCGTTTT.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCCGTTGCGTTCACTG..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACGGCCGTTGCGTT...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGTTGCGTTCACTGCTCCGCACTATC..3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCCGTTGCGTTCACTGCTCCATC.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCAACGGCCGTTGCGTTCAC................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACTGCTCCGCACTGGA..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCCGTTGCGTTCAC................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTGCTCCGCACT.....1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAACGGCCGTTGCGTTCAC................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCCGTTGCGTTCACTGCT............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGTTGCGTTCACTGCTC...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTGCGTTCACTGCTCCGCACT.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGTTGCGTTCACTGCTCCGCACTG....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTTGCGTTCACTGCTCC..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACGGCCGTTGCGTTCA.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGTTGCGTTCACTGCTCCGCACT.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGTTGCGTTCACTGCTCCGCACTG....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCACAATGCCAACGGCCGTTGCG.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTGCTCCGCACTGG...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCCGTTGCGTTCACT...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCAACGGCCGTTGCGTT...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGTTCACTGCTCCGCACTGG...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAACGGCCGTTGCGT....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAACGGCCGTTGCGTTCACT...............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGTTCACTGCTCCGCACT.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAATGCCAACGGCCGT.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCAACGGCCGTTGCGTTCACT...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGTTCACTGCTCCGCACT.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCCGTTGCGTTCACTGCTATC.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAACGGCCGTTGCGTTCACTGCT............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
T-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTAGGTGCCACCATAATGCCAACGGACGTTGCGTGCACTGCTCCTCACTGGAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGACGTTGCGTGCACT...............1911.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCACCATAATGCCAACGGAC...........................2311.00101000000000000000
droSec2
T-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTAGGTGCCACCATAATGCCAACGGACGTTGCGTGCACTGCTCCTCACTGGAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACGTTGCGTGCACT...............1812.0022000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAACGGACGTTGCGTGCAC................2311.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAACGGACGTTGCGTGCA.................2211.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGTTGCGTGCACTGCT............1911.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGCCAACGGACGTTGCGT....................2111.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCATAATGCCAACGGACG..........................2111.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACGGACGTTGCGTGCA.................2111.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACGTTGCGTGCACTGCTCC..........2311.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGACGTTGCGTGCACT...............1911.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAACGGACGTTGCGT....................2011.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTTGCGTGCACTGCTCCTCACTGG...2711.0011000
droYak3
A-TCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--T--TTTGTAGGTGCCACCACAATGCCAACGGCCGTTGCGTGCACTGCTCCGCACTGGAGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGCCAACGGCCGTTGCGT....................2211.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCCGTTGCGTGCACTGCTC...........2211.00110000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCACCACAATGCCAAC...............................1911.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACGGCCGTTGCGTGCA.................2111.00100000010000
droEre2
T-T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTTTAGGTGCCACCACAATGCCAACGGCCGTTGCGTGCACTGCTCCGCACTGGAGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGCACTGCTCCGCACTGG...2213.0033000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGTGCACTGCTCCGCACTGGA..2512.0022000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCCGTTGCGTGCACTGCT............2211.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAACGGCCGTTGCGTGCACTG..............2611.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACGGCCGTTGCGTGCA.................2011.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGCACTGCTCCGCACTGA...2211.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAACGGCCGTTGCGTGCA.................2311.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCCGTTGCGTGCACT...............2011.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTTGCGTGCACTGCTCCGCACT.....2511.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCCGTTGCGTGCACTGC.............2111.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCACTGCTCCGCACTGGAGC2411.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGTTGCGTGCACTGCTCCGCAC......2511.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCCGTTGCGTGCACTGCT............2111.0011000000

Generated: 05/16/2015 at 08:29 PM