ID:

dvi_4208

 Coordinate:

scaffold_12855:6630633-6630783 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ10215-cds]; exon [dvir_GLEANR_10155:3]; intron [Dvir\GJ10215-in]

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCGAATATACAGATGCACGTCGAGATGCCAGTGCACACCGTGCGGCAAGGGTGAGTATTTTATAAATAACATACATATATTTATATATATATATATATATATATATATATAGATATATATATAAGAAAGTCTACCTTCACCATTGTTTTGACCTTGTGAAAAACGAGGACAAGAATTTCTGACTTTAACGAGTGCCTTACGACCGATGTTAATGCAATATTTGTTGCTTTTGGGAAATTTAACGCGAAAAA
**************************************************((((((((((..........(((.((((((((((((((((((((....)))))))))))))))))))).)))...((((((..............(((((.((((((.....)))))).)))))......))))))...))))).))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060666
160_males_carcasses_total
 SRR060656
9x160_ovaries_total
 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
 V053
head
....................................................................................................................................................................GAGGATAAGAATTTTTGACTT.................................................................. 21 2 1 1.00 1 1 0 0 0 0
..........AGATGTAGGTCGAGATGC............................................................................................................................................................................................................................... 18 2 4 0.50 2 0 2 0 0 0
...............................................................................................................................................................AAGACGAGGACAAGCATTT......................................................................... 19 2 3 0.33 1 0 0 1 0 0
........................................................................................................................................................................ACAAGAATTTATGACTTTGA............................................................... 20 2 4 0.25 1 0 0 0 1 0
.........TAGATGCAGGTCGAGATG................................................................................................................................................................................................................................ 18 2 9 0.11 1 0 1 0 0 0
................................................................................................................................................................................................................TGAATGCACTATTTGCTGCTT...................... 21 3 14 0.07 1 0 0 0 0 1

Anti-sense strand reads

GGCTTATATGTCTACGTGCAGCTCTACGGTCACGTGTGGCACGCCGTTCCCACTCATAAAATATTTATTGTATGTATATAAATATATATATATATATATATATATATATATCTATATATATATTCTTTCAGATGGAAGTGGTAACAAAACTGGAACACTTTTTGCTCCTGTTCTTAAAGACTGAAATTGCTCACGGAATGCTGGCTACAATTACGTTATAAACAACGAAAACCCTTTAAATTGCGCTTTTT
**************************************************((((((((((..........(((.((((((((((((((((((((....)))))))))))))))))))).)))...((((((..............(((((.((((((.....)))))).)))))......))))))...))))).))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V047
embryo
 SRR060663
160_0-2h_embryos_total
................................................................................................................................CCGATGGAAGTGGTAACAAGC...................................................................................................... 21 3 2 0.50 1 1 0 0
.........GTCTACGCGCAGCTATAAGG.............................................................................................................................................................................................................................. 20 3 8 0.13 1 0 1 0
.................................................................................................................................CGAGGGAAGTGGTAACTAA....................................................................................................... 19 3 12 0.08 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:6630583-6630833 - dvi_4208 CC------GAATATACAGATGCACGTCGAGATGCCAG---TGCACACCGTGCGGCAAGGGTGAGTAT--TTTATAAATAA--CATACATATA----------------T--T--T-ATATATATATAT-------------------------------ATATAT----------AT----------ATAT------------------ATATAGATATATATAT--AAGAA--------------------------------------------AGT------------------------------------------------------CTACCTTCACCATTGTTTTGACCTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------GAAAAACG--AGGACAAGAATTTCTGACTTT---AACGAGTGCCTTACGACCGATGTTAATGCAATATTTGTTGCTTTTGGGAAATTTAACGCGAAAAA
droMoj3 scaffold_6540:7004942-7005170 - CC------GAATATACAGACGCACGTCGGGATGCCAG---TGCGCACCGTTCGGCGAGGGTAAGTAC--CTCA-----------TATAAATATATA---CATA---C----A--A-------GTATA-------------T------------------ATATGT----------AT----------GTAT--------------------ATATGTACA----T--A-------------TATATTACAATGTATACAA------------------------------------------------------------------------------CTCACCTTTGATTCGACCTTG---------CACGATGC----------------------------------------------------------------------------------------------GCGATGCT-A---------------------GCACAAAT--A-------TTGCG------------------------------------------------------------------------------------AACAGTTGCCTGGTGTCAGATGTTGTCTCAATAAATTTTACCTT-----------------AGGG
droGri2 scaffold_14906:2807537-2807757 - CC------GAATATACAGATGCACGTCGAGATGCCAG---TGCGCACCGTTCGGCGAGGGTGAGTAT--TATAT------------T-----------------------------AT----A--T---------------------------------ATATAT---------TA------------TGT--------------------GTATATACG----T--AAAT-------------ATCACAATCTAG--CA------------------------------------------------------------------------------TTCACCTTTAATTTGACCTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------G--AAAAGAGCACACAATAATTTTGAACAGTCAGCACGGTTGCCCAACGCCACATGGTATTGCAATAGCTTTTCCTTCTGGGAAATTG-----TAGCAT
droWil2 scf2_1100000004762:2934949-2935123 - AA------ATATATATA----------------------------------------------------------------------------------CATA---T----ATAT-AT----A--TAAATATTT-------------------------GTATATATAT----ATA----------------------------------TATATATATA----T--A--------------------------------------------------------TATA----------TATTTGTTTGTTTTGATAAGAAA-------------------------------------------------------TCAAAGACTTTTCTTATCTTGAAGATATACATATACATATACATACT----------------------------------------------------------TAT-------------------------A--ATTTTTGT---------------TGTT------------------------GTTGTTGGAATGAAAAGCG--AGAC--------------------------------------------------------------------------------TTTAA
dp5 XL_group1a:2920652-2920782 + AA------ACGAGAA-------------------------------------------------T--ATTTTAAGCGTAA--TATATACATATATA---CATA---T----A--T-------A--TA-----------TAT------------------ATATAT----------ATATATATATAAACACA------------------------TAT----AT--AAATA--------------------------------------------TATATATATGTACATAC---------------------------------------------------------------------------------------------------------------------------ATATATGTA--------------------------------------------------------TAT----------------------------------AT------------------------------------------------------GAAAAAAG--AGGA--------------------------------------------------------------------------------GAAAA
droPer2 scaffold_12:344955-345083 - AA------ACGAGAA-------------------------------------------------T--ATTTTAAGCGTAT--TATATACATATATA---CATA---T----A--T-A--------TA-----------TATATATA----------TATATAT------------A--------TAAACACA------------------------TAT----AT--AAATA--------------------------------------------TATATATATGTACATAC---------------------------------------------------------------------------------------------------------------------------ATATATGTA--------------------------------------------------------TAT----------------------------------AT------------------------------------------------------GAAAAAAG--AGGA--------------------------------------------------------------------------------GAAAA
droAna3 scaffold_13072:1020-1172 - AT------ATATATATA-------------------------------------------------------------------------------------------TATATAT-AT----ATATATATATACATAT---------------------ATAT------------A--------TA------------------------GACATATGTA----T--A--------------------------------------------------------TAGACATAA---------------------------------------------------------------------------------------------------------------------------ATTTTTCTTATTTTTGAAATTGATAACCAAATT-----------------------------AAATAT-------------------------G---------TTGATGTTAGTGTTATTACA------------------------------------------------------------------------------------ATCAGTGTTAATGGTATTCTTGTCT---------------------TTTT
droBip1 scf7180000396575:235931-236049 - CC------GAGTGTATGTATGT---------------------------------------------CTGTCTGCCGGCT--CTTATGCATGTATA---CATA---G----T--T-A--------TA-----------TATATATATATATATATAT--ATAT----------ATAT----------ATATATATATATATATATATATATATATATATA----T--A--------------------------------------------------------TATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302544:1601874-1602038 + AA------ATATGTGTA-------------------------------------------------T--TTTATGGGAAT--TATTTGTTTG-------------------------TTTATATATA-----------------------------T--ATATAT----ATATATAT----------------ATATATATATAT------------------GT------------------------------------------------------------------------------------T-----------------------CTGCCTTCAAAACAATCTCAAA---------------------TAAACGC---------TTTTGAGGATCTCTAAATCGATATTTATCGA----------------------------------------------------------TAT-------------------------GTAATTT--GT------------------------------------------------------GGAAAAAG--TGA-----------------------------------------------------------------------------ATTGAAAAA
droFic1 scf7180000454072:30853-30973 + AT------ATGTATAGGTATAT----CTATATGTATA---TGCATA--------------TGCA------------------TGT--------GT--------ATATGT--T---TATATATATATC-----------------------------T--ATAT----------ATAT----------ATATATATATATATATAT------------------ATAC--AT----------------------------------------GTATATGT------------AT--ATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTGAAC--------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------TCTA
droEle1 scf7180000491013:88160-88278 + TC------GGGCTTCCAG----------TGACGGTCCATCATCAATGCAT--------------------------GTAC--TATATATACATATA---TATA---T----A--T-AT----ATATATATATATATTT---------------------ATAT------------A--------TA------------------------AATATATATA----T--A--------------------------------------------------------TATATATAA---------------------------------------------------------------------------------------------------------------------------ATATATCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCA
droRho1 scf7180000770477:80683-80843 - AT------ATATATATA-------------------------------------------------------------------------------------------TATATAT-AT----ATATATATACATACAG---------------------ATAT------------A--------TA------------------------GATATATAT----AT--AAATATATTTA---TTTATTTATTTAGGTATATCAGGGTTTAGCGCACATCC------------AT--------------------------------------------------------------------------------------------TTG-----------------------------------------------------------------------------------------------TGACCTAACATTTAATTCAATTCT--GT---------------------------------------------------------------------------------------------------------------------------------------TGTTTATAAGATTTGTAATTTTATAAA
droBia1 scf7180000302391:50928-51049 - GT------GGTAACACAAATCGAGGCCACAATAGCAA---TA-ACACCGATAACCATGTGAGAGTAG--CCCAA----------AATATATATATA------------TATATAT-AT----ATATATATATATATCT---------------------ATAT------------A--------TA------------------------GATATATATA----T--A--------------------------------------------------------TATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000411343:21723-21830 - TAT-------ATA---------------------------------------------------------------------------TATGTATA---TATA---T----A--T-A--------TG-----------TATATATA----------TATATGT----------ATAT----------ATATA------------------------TAT----GT--ATATA--------------------------------------------TATATATGTATATATAC---------------------------------------------------------------------------------------------------------------------------ATATATG-----------------------------------------------------------------------------------------ATTTTTAT---------------AGCA------------------------AACGTT----TGA--------------------------------------------------------------------------------------------AAAGC
droEug1 scf7180000409440:92279-92392 + AGAAAAAAGGGGAATTAG----------TCATGAAGC---------ACATACCTCGC-AATGAGTAC--TTTACTGACATACTGTACATATATAT---------------------ATATATATATA-----------T--------------------ATATAT----------AT----------ATTT------------------ATATATATATATATAT--------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrUextra:292657-292882 + GT------ATGTATAT-----------------------------------------------------TCTAGATGAAG--GAGATATGCATAAAAAT----ATATAT--G---TATATATATATA-----------------------------T--ATAT----------ATGT----------ATATATATATGTATATAT------------------GTAA--AT-------ATA-----------------------------------TAT------------GTTGATAT---------------------------------------------AATAATTTCTACTTGTGATTCCAAAAGAATGT----------------------------------------------------------------------------------------------CTAAATTT-A---------------------AAACCTAT--C-------TTTTGAATAATTTTCAAATGACCGATCTAAATGAAATACAATATTTTATTGGCATAAAAATTG--AAAG--------------------------------------------------------------------------------AAAAA
droSim2 3r:22633937-22634069 - TC------AAATATACAAACATAAAGTGAAATGGCAGACTAGCAAAATATACAGTGCGTATGCGTAA--TAAA------------------------------ATAAAT--T---GAAATACATATA-----------------------------T--ATAT----------ATAC----------ATATATATATATATATAT------------------ATAG--AG-------ATG-----------------------------------CAT------------ACAAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droSec2 scaffold_22:677071-677234 + TAT-------ATA---------------------------------------------------------------------------TATACATA---CATA---T----A--T-A--------TA-----------TATATATA----------TATATAC------------A--------TACATATA------------------------TAT----AT--ACATA--------------------------------------------CATATATATATA----T---------------------------------------------------------------------------------------------------------------------------ATACTAAATGTTATTTGAGCAGACAAGAAAACTGTGTGTCAGAGCAAGCTATGCGTAAATATAAATAT-------------------------A---------TAAATAATGAAA-----------------------------------A-------------TA--T--------------------------------------------------------------------------------ATGGAAAA
droYak3 X:4189589-4189736 - TAT-------ACAC--------------------------------------------------------------ACA----AC--------AT--------ATATAT--T---TATATATATATA-----------------------------T--ATAT----------ATAT----------ATATATATATATATATAT------------------ATAT--GT-------ATA-----------------------------------TAT------------ATATGTACAACTGTCCCACTCGAACAGAGCTGGCAAAAGAA----------------------------------------------------CTTG-----------------------------------------------------------------------------------------------CGTCTCATCACGCATAACAATCGC--GC-------------------------------------------------------------------------------------------------------------------------------------------------------------CACGA
droEre2 scaffold_4929:13257548-13257654 + GGC-------AAAG--------------------------------------------------------------GCAT--TACAAATATATATA---TATA---T----ATAT-AT----ATATA--TATAT-------------------------ATATAT----------A----------------------TATAT------ATATATATATA----T--A--------------------------------------------------------TATA------GGTGG-------------------------GAAAAAAATTCATGGGCACCATCATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CC------GAATATACAGATGCACGTCGAGATGCCAG---TGCACACCGTGCGGCAAGGGTGAGTAT--TTTATAAATAA--CATACATATA----------------T--T--T-ATATATATATAT-------------------------------ATATAT----------AT----------ATAT------------------ATATAGATATATATAT--AAGAA--------------------------------------------AGT------------------------------------------------------CTACCTTCACCATTGTTTTGACCTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------GAAAAACG--AGGACAAGAATTTCTGACTTT---AACGAGTGCCTTACGACCGATGTTAATGCAATATTTGTTGCTTTTGGGAAATTTAACGCGAAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CC------GAATATACAGACGCACGTCGGGATGCCAG---TGCGCACCGTTCGGCGAGGGTAAGTAC--CTCA-----------TATAAATATATA---CATA---C----A--A-------GTATA-------------T------------------ATATGT----------AT----------GTAT--------------------ATATGTACA----T--A-------------TATATTACAATGTATACAA------------------------------------------------------------------------------CTCACCTTTGATTCGACCTTG---------CACGATGC----------------------------------------------------------------------------------------------GCGATGCT-A---------------------GCACAAAT--A-------TTGCG------------------------------------------------------------------------------------AACAGTTGCCTGGTGTCAGATGTTGTCTCAATAAATTTTACCTT-----------------AGGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................TTTGATTCGACCTTG---------CACG.............................................................................................................................................................................................................................................................................................................1911.001010000
droGri2
CC------GAATATACAGATGCACGTCGAGATGCCAG---TGCGCACCGTTCGGCGAGGGTGAGTAT--TATAT------------T-----------------------------AT----A--T---------------------------------ATATAT---------TA------------TGT--------------------GTATATACG----T--AAAT-------------ATCACAATCTAG--CA------------------------------------------------------------------------------TTCACCTTTAATTTGACCTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------G--AAAAGAGCACACAATAATTTTGAACAGTCAGCACGGTTGCCCAACGCCACATGGTATTGCAATAGCTTTTCCTTCTGGGAAATTG-----TAGCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AA------ATATATATA----------------------------------------------------------------------------------CATA---T----ATAT-AT----A--TAAATATTT-------------------------GTATATATAT----ATA----------------------------------TATATATATA----T--A--------------------------------------------------------TATA----------TATTTGTTTGTTTTGATAAGAAA-------------------------------------------------------TCAAAGACTTTTCTTATCTTGAAGATATACATATACATATACATACT----------------------------------------------------------TAT-------------------------A--ATTTTTGT---------------TGTT------------------------GTTGTTGGAATGAAAAGCG--AGAC--------------------------------------------------------------------------------TTTAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGT---------------TGTT------------------------GTTGTTGG......................................................................................................19200.05100001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------A--ATTTTTGT---------------TGTT------------------------GTTGT.........................................................................................................19200.05100010
dp5
AA------ACGAGAA-------------------------------------------------T--ATTTTAAGCGTAA--TATATACATATATA---CATA---T----A--T-------A--TA-----------TAT------------------ATATAT----------ATATATATATAAACACA------------------------TAT----AT--AAATA--------------------------------------------TATATATATGTACATAC---------------------------------------------------------------------------------------------------------------------------ATATATGTA--------------------------------------------------------TAT----------------------------------AT------------------------------------------------------GAAAAAAG--AGGA--------------------------------------------------------------------------------GAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AA------ACGAGAA-------------------------------------------------T--ATTTTAAGCGTAT--TATATACATATATA---CATA---T----A--T-A--------TA-----------TATATATA----------TATATAT------------A--------TAAACACA------------------------TAT----AT--AAATA--------------------------------------------TATATATATGTACATAC---------------------------------------------------------------------------------------------------------------------------ATATATGTA--------------------------------------------------------TAT----------------------------------AT------------------------------------------------------GAAAAAAG--AGGA--------------------------------------------------------------------------------GAAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AT------ATATATATA-------------------------------------------------------------------------------------------TATATAT-AT----ATATATATATACATAT---------------------ATAT------------A--------TA------------------------GACATATGTA----T--A--------------------------------------------------------TAGACATAA---------------------------------------------------------------------------------------------------------------------------ATTTTTCTTATTTTTGAAATTGATAACCAAATT-----------------------------AAATAT-------------------------G---------TTGATGTTAGTGTTATTACA------------------------------------------------------------------------------------ATCAGTGTTAATGGTATTCTTGTCT---------------------TTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGTTATTACA------------------------------------------------------------------------------------ATCAGTGTTAATG.....................................26120.172101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACA------------------------------------------------------------------------------------ATCAGTGTTAATGGTA..................................21140.142000002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTACA------------------------------------------------------------------------------------ATCAGTGTTAATGGTAT.................................27120.081010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGTTATTACA------------------------------------------------------------------------------------ATCAGTGTTAATGGC...................................28120.081100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTACA------------------------------------------------------------------------------------ATCAGTGTTAATGGT...................................25120.081010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTACA------------------------------------------------------------------------------------ATCAGTGTTAATGGTA..................................26120.081001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACA------------------------------------------------------------------------------------ATCAGTGTTAATGGTATTCTT.............................28140.071010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGTTAATGGTATTCTTGTCT---------------------TTT.27140.071001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTATTTTTGAAATTGATAACC.....................................................................................................................................................................................................................................25140.071010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACA------------------------------------------------------------------------------------ATCAGTGTTAATGGTATTCC..............................27140.071010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------ATCAGTGTTAATGGTATTCT..............................21140.071000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACA------------------------------------------------------------------------------------ATCAGTGTTAATGGTATTCT..............................27140.071010000
droBip1
CC------GAGTGTATGTATGT---------------------------------------------CTGTCTGCCGGCT--CTTATGCATGTATA---CATA---G----T--T-A--------TA-----------TATATATATATATATATAT--ATAT----------ATAT----------ATATATATATATATATATATATATATATATATA----T--A--------------------------------------------------------TATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AA------ATATGTGTA-------------------------------------------------T--TTTATGGGAAT--TATTTGTTTG-------------------------TTTATATATA-----------------------------T--ATATAT----ATATATAT----------------ATATATATATAT------------------GT------------------------------------------------------------------------------------T-----------------------CTGCCTTCAAAACAATCTCAAA---------------------TAAACGC---------TTTTGAGGATCTCTAAATCGATATTTATCGA----------------------------------------------------------TAT-------------------------GTAATTT--GT------------------------------------------------------GGAAAAAG--TGA-----------------------------------------------------------------------------ATTGAAAAASizeHit CountTotal NormTotal
No Reads
droFic1
AT------ATGTATAGGTATAT----CTATATGTATA---TGCATA--------------TGCA------------------TGT--------GT--------ATATGT--T---TATATATATATC-----------------------------T--ATAT----------ATAT----------ATATATATATATATATAT------------------ATAC--AT----------------------------------------GTATATGT------------AT--ATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTGAAC--------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------TCTASizeHit CountTotal NormTotal
No Reads
droEle1
TC------GGGCTTCCAG----------TGACGGTCCATCATCAATGCAT--------------------------GTAC--TATATATACATATA---TATA---T----A--T-AT----ATATATATATATATTT---------------------ATAT------------A--------TA------------------------AATATATATA----T--A--------------------------------------------------------TATATATAA---------------------------------------------------------------------------------------------------------------------------ATATATCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCASizeHit CountTotal NormTotal
No Reads
droRho1
AT------ATATATATA-------------------------------------------------------------------------------------------TATATAT-AT----ATATATATACATACAG---------------------ATAT------------A--------TA------------------------GATATATAT----AT--AAATATATTTA---TTTATTTATTTAGGTATATCAGGGTTTAGCGCACATCC------------AT--------------------------------------------------------------------------------------------TTG-----------------------------------------------------------------------------------------------TGACCTAACATTTAATTCAATTCT--GT---------------------------------------------------------------------------------------------------------------------------------------TGTTTATAAGATTTGTAATTTTATAAASizeHit CountTotal NormTotal
No Reads
droBia1
GT------GGTAACACAAATCGAGGCCACAATAGCAA---TA-ACACCGATAACCATGTGAGAGTAG--CCCAA----------AATATATATATA------------TATATAT-AT----ATATATATATATATCT---------------------ATAT------------A--------TA------------------------GATATATATA----T--A--------------------------------------------------------TATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TAT-------ATA---------------------------------------------------------------------------TATGTATA---TATA---T----A--T-A--------TG-----------TATATATA----------TATATGT----------ATAT----------ATATA------------------------TAT----GT--ATATA--------------------------------------------TATATATGTATATATAC---------------------------------------------------------------------------------------------------------------------------ATATATG-----------------------------------------------------------------------------------------ATTTTTAT---------------AGCA------------------------AACGTT----TGA--------------------------------------------------------------------------------------------AAAGCSizeHit CountTotal NormTotal
No Reads
droEug1
AGAAAAAAGGGGAATTAG----------TCATGAAGC---------ACATACCTCGC-AATGAGTAC--TTTACTGACATACTGTACATATATAT---------------------ATATATATATA-----------T--------------------ATATAT----------AT----------ATTT------------------ATATATATATATATAT--------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GT------ATGTATAT-----------------------------------------------------TCTAGATGAAG--GAGATATGCATAAAAAT----ATATAT--G---TATATATATATA-----------------------------T--ATAT----------ATGT----------ATATATATATGTATATAT------------------GTAA--AT-------ATA-----------------------------------TAT------------GTTGATAT---------------------------------------------AATAATTTCTACTTGTGATTCCAAAAGAATGT----------------------------------------------------------------------------------------------CTAAATTT-A---------------------AAACCTAT--C-------TTTTGAATAATTTTCAAATGACCGATCTAAATGAAATACAATATTTTATTGGCATAAAAATTG--AAAG--------------------------------------------------------------------------------AAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............TAT-----------------------------------------------------TCTAGATGAAG--GAGATATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2221.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.T------ATGTATAT-----------------------------------------------------TCTAGATGAAG--GAGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGCATAAAAATTG--AAAG--------------------------------------------------------------------------------AAAA.2561.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000301000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TCTACTTGTGATTCCAAAAGAATGT----------------------------------------------------------------------------------------------C..........................................................................................................................................................................................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TGTATAT-----------------------------------------------------TCTAGATGAAG--GAGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TAT--G---TATATATATATA-----------------------------T--ATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.651300000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TCTACTTGTGATTCCAAAAGAATGT----------------------------------------------------------------------------------------------CT.........................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................ATTCCAAAAGAATGT----------------------------------------------------------------------------------------------CTAAAT.....................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................AGATGAAG--GAGATATGCATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...........TATAT-----------------------------------------------------TCTAGATGAAG--GAGATATGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TGT----------------------------------------------------------------------------------------------CTAAATTT-A---------------------AAACCTAT--C-------TTT.......................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................ATA-----------------------------------TAT------------GTTGATAT---------------------------------------------AATAATTTC................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TCTAGATGAAG--GAGATATGCATAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TGTATAT-----------------------------------------------------TCTAGATGAAG--GAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............TAT-----------------------------------------------------TCTAGATGAAG--GAGATATGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TATAT-----------------------------------------------------TCTAGATGAAG--GAGATATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TAATTTCTACTTGTGATTCCA..................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............T-----------------------------------------------------TCTAGATGAAG--GAGATATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................AAG--GAGATATGCATAAAAAT----A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATTTTCAAATGACCGAT................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.........TGTATAT-----------------------------------------------------TCTAGATGAAG--GAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................ATGAAG--GAGATATGCATAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGCATAAAAATTG--AAAG--------------------------------------------------------------------------------AAAAA2660.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................GT----------ATATATATATGTATATAT------------------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........TATAT-----------------------------------------------------TCTAGATGAAG--GAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TATAT-----------------------------------------------------TCTAGATGAAG--GAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGGCATAAAAATTG--AAAG--------------------------------------------------------------------------------AAAA.2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................TATATATATGTATATAT------------------GTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
..................................................................................................T----ATATAT--G---TATATATATATA-----------------------------T--ATAT----------ATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................T----------ATGT----------ATATATATATGTATATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATGACCGATCTAAATG.........................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TAT----------ATGT----------ATATATATATGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................T--ATAT----------ATGT----------ATATATATATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACCGATCTAAATGAAAT.....................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................ATATA-----------------------------T--ATAT----------ATGT----------ATATATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000
..................................................................................................................................................................T----------ATGT----------ATATATATATGTATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TAT----------ATGT----------ATATATATATGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AAGAATGT----------------------------------------------------------------------------------------------CTAAATTT-A---------------------AAATT.......................................................................................................................................................................22160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................ATGT----------ATATATATATGTATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................ATATATATA-----------------------------T--ATAT----------ATGT----------AT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................T----------ATATATATATGTATATAT------------------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................T----ATATAT--G---TATATATATATA-----------------------------T--ATAT----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................ATATATATATGTATATAT------------------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................ATA-----------------------------T--ATAT----------ATGT----------ATATATATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................TATAT--G---TATATATATATA-----------------------------T--A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................T----------ATATATATATGTATATAT------------------GTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................T--ATAT----------ATGT----------ATATATATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TATA-----------------------------T--ATAT----------ATGT----------ATATATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TC------AAATATACAAACATAAAGTGAAATGGCAGACTAGCAAAATATACAGTGCGTATGCGTAA--TAAA------------------------------ATAAAT--T---GAAATACATATA-----------------------------T--ATAT----------ATAC----------ATATATATATATATATAT------------------ATAG--AG-------ATG-----------------------------------CAT------------ACAAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TAT-------ATA---------------------------------------------------------------------------TATACATA---CATA---T----A--T-A--------TA-----------TATATATA----------TATATAC------------A--------TACATATA------------------------TAT----AT--ACATA--------------------------------------------CATATATATATA----T---------------------------------------------------------------------------------------------------------------------------ATACTAAATGTTATTTGAGCAGACAAGAAAACTGTGTGTCAGAGCAAGCTATGCGTAAATATAAATAT-------------------------A---------TAAATAATGAAA-----------------------------------A-------------TA--T--------------------------------------------------------------------------------ATGGAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TAT-------ACAC--------------------------------------------------------------ACA----AC--------AT--------ATATAT--T---TATATATATATA-----------------------------T--ATAT----------ATAT----------ATATATATATATATATAT------------------ATAT--GT-------ATA-----------------------------------TAT------------ATATGTACAACTGTCCCACTCGAACAGAGCTGGCAAAAGAA----------------------------------------------------CTTG-----------------------------------------------------------------------------------------------CGTCTCATCACGCATAACAATCGC--GC-------------------------------------------------------------------------------------------------------------------------------------------------------------CACGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................TGGCAAAAGAA----------------------------------------------------CTTG-----------------------------------------------------------------------------------------------CGTCTCATCACGC.................................................................................................................................................................................2811.00100000010000
......................................................................................................................................................................................................................................................................................................TGTACAACTGTCCCACTCGA.......................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
droEre2
GGC-------AAAG--------------------------------------------------------------GCAT--TACAAATATATATA---TATA---T----ATAT-AT----ATATA--TATAT-------------------------ATATAT----------A----------------------TATAT------ATATATATATA----T--A--------------------------------------------------------TATA------GGTGG-------------------------GAAAAAAATTCATGGGCACCATCATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/19/2015 at 12:57 PM