ID:

dvi_416

 Coordinate:

scaffold_12958:2992545-2992599 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-34.2 -33.3 -33.3

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dvi_416  scaffold_12958:2992546-2992569 -
  2. scaffold_13050:1827482-1827505 -
  3. scaffold_13050:1840510-1840533 -
  4. scaffold_13050:3206625-3206648 -
  5. scaffold_13050:3212330-3212353 -
star

Sense Strand Reads

AGCGGCGCGGCTTGTATCTAATGAGGCAGGTGTCCTGCAACCGCTGCTGGTAGATGCTGTGGTTGTAGTAGTTGTTACTGTCGTTGTGCTGACAGTGTCATGCTGCTGCGGTTGCCAAGTCGAGTATTGCTGGGTACCGGCTGACCGCAAGGTGG
***********************************.((((((((.((.((((((((((((((((((((((.....))))).))....))).)))))))).)))))).)))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060677
Argx9_ovaries_total
 M047
female body
 SRR060676
9xArg_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060673
9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 V047
embryo
 SRR060674
9x140_ovaries_total
 SRR060658
140_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 M061
embryo
 GSM1528803
follicle cells		 V116
male body		 SRR060672
9x160_females_carcasses_total
 SRR1106719
embryo_8-10h
 SRR060683
160_testes_total
 SRR1106723
embryo_12-14h
 SRR060655
9x160_testes_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR1106715
embryo_4-6h
 SRR1106716
embryo_4-6h
 SRR060670
9_testes_total
 M027
male body		 SRR1106728
larvae
................................................................................TCGTTGTGCTGACAGTGTCATGCTGC................................................. 26 0 1 79.00 79 11 6 6 7 7 4 5 5 4 3 1 2 6 1 2 3 2 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCT................................................... 24 0 5 40.40 202 30 6 25 16 11 14 14 16 9 10 10 9 0 8 12 6 1 1 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGC.................................................... 23 0 5 25.20 126 12 3 11 9 5 14 12 3 12 16 3 6 1 4 3 2 4 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCTG.................................................. 25 0 5 6.60 33 3 3 8 4 1 1 0 0 0 1 1 1 0 3 0 0 5 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCG................ 25 0 6 5.33 32 2 0 6 6 0 5 0 4 0 0 2 0 0 4 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATTGCTGGGTACCGGCTGACCGC....... 24 0 6 3.67 22 0 9 1 0 4 0 1 0 0 1 2 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCAT...................................................... 21 0 6 3.17 19 2 1 5 1 0 0 1 0 1 1 1 0 0 0 3 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................CTGGTAGATGCGGTGGTC........................................................................................... 18 2 4 3.00 12 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGTCGAGTATTGCTGGGTACCGG............... 24 0 4 3.00 12 2 0 3 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACC................. 24 0 6 2.83 17 1 0 3 1 1 6 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATG..................................................... 22 0 6 2.83 17 1 3 0 1 0 0 1 0 0 0 0 3 1 1 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCGGC.............. 27 0 4 2.75 11 2 0 3 1 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CAAGTCGAGTATTGCTGGGTACCGGC.............. 26 0 4 2.00 8 2 0 1 2 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCTGCTA............................................... 28 1 1 2.00 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATTGCTGGGTACCGGCTGACCGCAAG.... 27 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................CTGGTAGATGCGGTGGTCGAA........................................................................................ 21 3 3 2.00 6 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATTGCTGGGTACCGGCTGACC......... 22 0 6 2.00 12 0 7 2 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................CTGGTAGATGCGGTGGTCG.......................................................................................... 19 2 4 1.75 7 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCGG............... 26 0 4 1.75 7 1 0 3 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGGGT.................... 21 0 6 1.67 10 0 0 1 2 0 4 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATTGCTGGGTACCGGCTGACCG........ 23 0 6 1.67 10 0 6 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGTCGAGTATTGCTGGGTACCGGC.............. 25 0 4 1.50 6 1 1 2 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCTC.................................................. 25 1 5 1.20 6 1 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCTT.................................................. 25 1 5 1.20 6 1 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................CTGGTAGATGCGGTGGTCGA......................................................................................... 20 3 10 1.10 11 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTGTGCTGACAGTGTCATGCTGC................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTGTCCTGACAGTGTCATGCTGC................................................. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATTGCTGGGTACCGGCTGACCGCAAGG... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............ATCTATTAAGGCAGGTGCCCT....................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCTGCTT............................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCTTCT................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TGTATCTAATGAGGCAGGTGTCCTGC..................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATTGCTGGGTACCGGCTGACCGCAA..... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCTGCTG............................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATTCTGC................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTGTGCTGACAGTGTCCTGCTGC................................................. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GCGGCTTGTATCTAATGAGGCA............................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGGGTAC.................. 23 0 6 1.00 6 0 0 1 2 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATTGCTGGGTACCGGCTGACCGCA...... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCTA.................................................. 25 1 5 0.80 4 0 0 0 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CAAGTCGAGTATTGCTGGGTACCGG............... 25 0 4 0.75 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGTCGAGTATTGCTGGGTACCG................ 23 0 6 0.67 4 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GTCGTTGTGCTGACAGTGTCATGCTG.................................................. 26 0 5 0.60 3 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTGTGCTGACAGTGTCATGCT................................................... 22 0 5 0.60 3 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCC................................................... 24 1 5 0.60 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTC........................................................ 19 0 7 0.57 4 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................TGCGGTTGCCAAGTCGAGTATTGC......................... 24 0 6 0.50 3 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CAAGTCGAGTATTGCTGGGTACC................. 23 0 6 0.50 3 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TGCAACCGCTGCTGGTAGATGCTGTG.............................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTCGTTGTGCTGACAGTGTCAT...................................................... 23 0 6 0.50 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCGTGCTGC................................................. 26 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................CTGGTAGATGCGGTGGTCGAAG....................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATTGCTGGGTACCGGCTGAC.......... 21 0 6 0.50 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TAGCAGTTGTTACTTTTGTTGTGCT................................................................. 25 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCA....................................................... 20 0 6 0.50 3 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGG...................... 19 0 6 0.50 3 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCT........................ 17 0 6 0.50 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0
...............................................................TGTAGTAGTTGTTACTGTCGTTG..................................................................... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGT......................................................... 18 0 7 0.43 3 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTTGTGCTGACAGTGTCATGC.................................................... 21 0 5 0.40 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TCGAGTATTGCTGGGTACCGGCTC............ 24 1 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTTATGCT................................................... 24 1 5 0.40 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTCTGGTAGATGCGGTGGTCG.......................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TGTAGTAGTTGTTACTGTC......................................................................... 19 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TCCTGCAACCGCTGCTGGTAGATGC.................................................................................................. 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTCTGGTAGATGCGGTGGTC........................................................................................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGTCGAGTATTGCTGGGTACC................. 22 0 6 0.33 2 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTCGTTGTGCTGACAGTGTCATG..................................................... 24 0 6 0.33 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGAAA....................................................... 20 2 7 0.29 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGTCGAGTATTGCTGGGTACCGGCTGAC.......... 28 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGACTATTGCTGGGTACCGG............... 26 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCGGT.............. 27 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GTCGAGTATTGCTGGGTACCGGCTGAC.......... 27 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGCGTCTTGCTGGGTCCCGG............... 26 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATTGCTGGGTACCGGCTGACCGCCAG.... 27 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GTCGAGTATTGCTGGGTACCGGCTGACCGC....... 30 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GTCGAGTATTGCTGGGTACCGG............... 22 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCTGA................................................. 26 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TCGAGTATTGCTGGGTACCGGCTG............ 24 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAATTCGAGTATTGCTGGGTACCGGC.............. 27 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATGCCC.................................................. 25 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTCACAGTGTCATGCT................................................... 24 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TTGTTGTGCTGACAGTGTCATGCT................................................... 24 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTTACAGTGTCATGCT................................................... 24 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CCGTTGTGCTGACAGTGTCATGCT................................................... 24 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTACTGACAGTGTCATGCT................................................... 24 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGATAGTGTCATGCT................................................... 24 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATTCTG.................................................. 25 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTCGTTGTGCTGACAGTGTCATGC.................................................... 25 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CCGTTGTGCTGACCGTGTCATGC.................................................... 23 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TCTCGTTGTGCTGACAGTGTCATGCT................................................... 26 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACCGTGTCATGCT................................................... 24 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TCGAGTATTGCTGGGTACCGGCTGA........... 25 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GAGTATTGCTGGGTACCGGCTGAC.......... 24 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCCGACAGTGTCATGC.................................................... 23 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CCGTTGTGCTGACAGTGTCATGC.................................................... 23 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGATGACAGTGTCATGC.................................................... 23 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCTTTGTGCTGACAGTGTCATGCT................................................... 24 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGAGTCATGCT................................................... 24 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGGTTACCG................ 25 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GTCGAGTATTGCTGGGTACCG................ 21 0 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GGTAGATGCGGTGGTCGAAG....................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGTCGAGTATTGCTGTGTA................... 20 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGCGGTTGCCAAGTCGAGTATTGCT........................ 25 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TGCCAAGTCGAGTATTGCTGGGTA................... 24 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATTGCTGGGTACCGGCTGACCGT....... 24 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACAAGTCGAGTATTGCTGG...................... 19 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GAGTATTGCTGGGTACCGGCTT............ 22 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................CCAAGCCGAGTATTGCTGGGTACCG................ 25 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TATTGCTGAGTACCGGCTGACC......... 22 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CAAGTCGAGTATTGCTGGGTACCG................ 24 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AGTATTGCTGGGTACCGG............... 18 0 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCGT............... 26 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGTCGAGTATTGCTGGGTAC.................. 21 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CAAGTCGAGTATTGCTGGG..................... 19 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACAAGTCGAGTATTGCTGGCTACC................. 24 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGTCGAGTATTGCTGGGT.................... 19 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTTAA...................................................... 21 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTACTGCTGGGTA................... 22 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCCTGCT................................................... 24 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GTATTGCTGGGTACCGGCTGA........... 21 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................ATTGCTGGGTACCGGCTGACC......... 21 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GCCAAGTCGAGTATTGCTGGGTACC................. 25 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CAAGTCGAGTATTGCTGGGTAC.................. 22 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTTGAGTATTGCTGGGTA................... 22 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCGTT.............. 27 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATATTGCTGGGTACCGGCTGACC......... 23 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACAG................ 25 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GTATTGCTGGGTACCGGCTGACCGC....... 25 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTGCCAAGTCGAGTATTGCTGG...................... 22 0 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTTGCCAAGTCGAGTATTGCTGGGT.................... 25 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................ATTGCTGGGTACCGGCTCC........... 19 2 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AATTCGAGTATTGCTGGGTACC................. 22 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGTCATC..................................................... 22 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTCGTTGTGCTGATAGTGTCATG..................................................... 24 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGTCAGTGTCATGCT................................................... 24 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GGTAGATGCGGTGGTCGAA........................................................................................ 19 3 19 0.11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCGTTGTGCTGACAGTGCCA....................................................... 20 1 20 0.10 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CTGATGGTAGATTCTCTGGT............................................................................................ 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................GCAGGTGTCGTACAACGGC............................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................TCGTTGTGCTGACAGTGCCATGCT................................................... 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CTGTGGTTGTAGGACT................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCGCCGCGCCGAACATAGATTACTCCGTCCACAGGACGTTGGCGACGACCATCTACGACACCAACATCATCAACAATGACAGCAACACGACTGTCACAGTACGACGACGCCAACGGTTCAGCTCATAACGACCCATGGCCGACTGGCGTTCCACC
***********************************.((((((((.((.((((((((((((((((((((((.....))))).))....))).)))))))).)))))).)))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR1106718
embryo_6-8h
 M061
embryo
 SRR060675
140x9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060677
Argx9_ovaries_total
 M027
male body		 SRR060654
160x9_ovaries_total
 SRR060687
9_0-2h_embryos_total
 V116
male body		 V053
head
 SRR060656
9x160_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR1106729
mixed whole adult body
 SRR1106712
embryo_0-2h
...............................................................ACATCATCAACAATGACAGCAACACGA................................................................. 27 0 2 3.00 6 2 0 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................CGACGCCAACGGTTCAGCTCA.............................. 21 0 1 3.00 3 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................ACTGTCACAGTACGACGACGCCAACG........................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CATCATCAACAATGACAGCAACACGA................................................................. 26 0 2 2.00 4 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CGACGACGCCAACGGTTCAGCTC............................... 23 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CAACGGTTCAGCTCATAACGACCC..................... 24 0 6 1.83 11 7 0 0 0 1 0 0 0 2 0 0 0 0 0 0 1 0 0
...................................................................CATCAACAATGACAGCAACACGA................................................................. 23 0 2 1.50 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CGACGCCAACGGTTCAGCTCATAA........................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AACGGTTCAGCTCATAACGACCC..................... 23 0 6 1.00 6 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGTACGACGACGCCAACGGTTCAGCTC............................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................ACGGTTCAGCTCATAACGACCC..................... 22 0 6 1.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TCATCAACAATGACAGCAACACGA................................................................. 24 0 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TCATCAACAATGACAGCAACACGATAG.............................................................. 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CCACAGGACGTTGGCGACGACCATCT..................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CGGTTCAGCTCATAACGACCC..................... 21 0 6 1.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CCAACGGTTCAGCTCATAACGACCC..................... 25 0 6 0.67 4 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TACATCATCAACAATGACAGCAACACGA................................................................. 28 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................ACATCATCAACAATGACAGCAACACG.................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CATCAACAATGACAGCAACACTA................................................................. 23 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................ATCATCAACAATGACAGCAACACG.................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGGCCAACTGGCTTTCCATC 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................CATCAACAATGACAGCAACAAGA................................................................. 23 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ATCAACAATGACAGCAACACGA................................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CGCCAACGGTTCAGCTCATAACGACCC..................... 27 0 6 0.50 3 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................TCATCAACAATGACAGCAACACTA................................................................. 24 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GTTGGCGACGACCATCTACGA................................................................................................. 21 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................GGTTCAGCTCATAACGACCC..................... 20 0 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...CTGCGCCTAATATAGATTACT................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................TGCTCATAACGACCCATGGCCGAC............ 24 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CGGTTCAGCTCATAACGA........................ 18 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CCGGTTCAGCTCATAACGACCC..................... 22 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................ACGGTTCAGCTCATAACGACC...................... 21 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GCCAACGGTTCAGCTCAT............................. 18 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................CACGGTTCAGCTCATAACGACCC..................... 23 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................CGGTTCAGCTCATAACGAC....................... 19 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AACGGTTCAGCTCATAACGAC....................... 21 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GGTTCAGCTCATAACGAC....................... 18 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CATAACGACCCATGGCCGACT........... 21 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................TACGCCAACGGTTCAGCTCATAA........................... 23 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CGGTTCAGCTCATAACGACGC..................... 21 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GCCAACGGTTCAGCTCATAA........................... 20 0 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................GCCAACGGTTCAGCTCATAACGACCC..................... 26 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TTTCAGCTCATAACGACCCATG.................. 22 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................ACGCCAACGGTTCAGCTCAT............................. 20 0 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................ACGGTTCAGCGCATAACGACCC..................... 22 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TCCGTCCGCAGGACGTG................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................CGCCAACGGTTCAGCTC............................... 17 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12958:2992495-2992649 - dvi_416 AGCGGCGCGGCTTGTATCTAATGAGGCAGGTGTCCTGCAACCGCTGCTGGTAGATGCTGTGGTTGTAGTAGTTGTTACTGTCGTTGTGCTGACAGTGTCATGCTGCTGCGGTTGCCAAGTCGAGTATTGCTGGGTACCGGCTGACCGCAAGGTGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGCGGCGCGGCTTGTATCTAATGAGGCAGGTGTCCTGCAACCGCTGCTGGTAGATGCTGTGGTTGTAGTAGTTGTTACTGTCGTTGTGCTGACAGTGTCATGCTGCTGCGGTTGCCAAGTCGAGTATTGCTGGGTACCGGCTGACCGCAAGGTGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................TCGTTGTGCTGACAGTGTCATGCTGC.................................................26179.00790061304020202100000000041261100005037715000000000000000000006000
................................................................................TCGTTGTGCTGACAGTGTCATGCT...................................................24540.402020060100901202011000000000148925300000162616111014000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCATGC....................................................23525.20126003016012030034300000000014461112000030295312000000000000000000001000
................................................................................TCGTTGTGCTGACAGTGTCATGCTG..................................................2556.6033003010000001510000000001318300000004110000000000000000000000000
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCG................2565.3332000000000020100000000005406200004006020000000000000000000000000
............................................................................................................................TATTGCTGGGTACCGGCTGACCGC.......2463.6722009010001000000000000000011000000020421000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCAT......................................................2163.1719001010103010010000000000005200000011011000000000000000000000000
....................................................................................................................AAGTCGAGTATTGCTGGGTACCGG...............2443.0012000011100010010000000000003200000000101000000000000000000000000
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACC.................2462.8317000000000000000000000006203100001001100000010000000100000000000
................................................................................TCGTTGTGCTGACAGTGTCATG.....................................................2262.8317003000003000120000000000130100000001001000000000000000000001000
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCGGC..............2742.7511000000000000000000000000003200004001000000000001000000000000000
...................................................................................................................CAAGTCGAGTATTGCTGGGTACCGGC..............2642.008000000000000000000000000101200000002200000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCATGCTGCTA...............................................2812.002000000000000000000000000000000000000110000000000000000000000000
............................................................................................................................TATTGCTGGGTACCGGCTGACCGCAAG....2712.002000000000000000000000000000000000000110000000000000000000000000
............................................................................................................................TATTGCTGGGTACCGGCTGACC.........2262.0012007000000000000000000000102000000000011000000000000000000000000
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCGG...............2641.757000000000000100000000000003100001000010000000000000000000000000
..................................................................................................................CCAAGTCGAGTATTGCTGGGT....................2161.6710000000100000000000000004101000001002000000000000000000000000000
............................................................................................................................TATTGCTGGGTACCGGCTGACCG........2361.6710006100000000000000000000010000000000110000000000000000000000000
....................................................................................................................AAGTCGAGTATTGCTGGGTACCGGC..............2541.506001010000000000000000000102100000000000000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCATGCTC..................................................2551.206000000000000000000000000001110000000003000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCATGCTT..................................................2551.206000000100000000000000000010100001001001000000000000000000000000
..................................................................................GTTGTGCTGACAGTGTCATGCTGC.................................................2411.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................TATTGCTGGGTACCGGCTGACCGCAAGG...2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCATGCTGCTT...............................................2811.001000000000000000000000000000100000000000000000000000000000000000
............TGTATCTAATGAGGCAGGTGTCCTGC.....................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TATTGCTGGGTACCGGCTGACCGCAA.....2611.001000000000000000000000000010000000000000000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCATGCTGCTG...............................................2811.001000000000001000000000000000000000000000000000000000000000000000
......GCGGCTTGTATCTAATGAGGCA...............................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CCAAGTCGAGTATTGCTGGGTAC..................2361.006000000100000000000000000001000001002100000000000000000000000000
............................................................................................................................TATTGCTGGGTACCGGCTGACCGCA......2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCATGCTA..................................................2550.804000000000000000000000000100000000002001000000000000000000000000
...................................................................................................................CAAGTCGAGTATTGCTGGGTACCGG...............2540.753000000000000000000000000000100000000200000000000000000000000000
....................................................................................................................AAGTCGAGTATTGCTGGGTACCG................2360.674000010100000000000000001000000000000001000000000000000000000000
...............................................................................GTCGTTGTGCTGACAGTGTCATGCTG..................................................2650.603001000200000000000000000000000000000000000000000000000000000000
..................................................................................GTTGTGCTGACAGTGTCATGCT...................................................2250.603001000000000000000000000000000000001001000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCATGCC...................................................2450.603000100001000000000000000000000000001000000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTC........................................................1970.574001000001000000000001000000000000000001000000000000000000000000
..........................................................................................................TGCGGTTGCCAAGTCGAGTATTGC.........................2460.503000000000000000000000000001000000000200000000000000000000000000
...................................................................................................................CAAGTCGAGTATTGCTGGGTACC.................2360.503000000000000000000000000100000000001100000000000000000000000000
...................................TGCAACCGCTGCTGGTAGATGCTGTG..............................................................................................2620.501000000000000000000000000000100000000000000000000000000000000000
..............................................................................TGTCGTTGTGCTGACAGTGTCAT......................................................2360.503001000000000000000000000001100000000000000000000000000000000000
............................................................................................................................TATTGCTGGGTACCGGCTGAC..........2160.503002000000000000000000000000100000000000000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCA.......................................................2060.503000000100000000000000001000000000010000000000000000000000000000
..................................................................................................................CCAAGTCGAGTATTGCTGG......................1960.503000000000000000000000002100000000000000000000000000000000000000
..................................................................................................................CCAAGTCGAGTATTGCT........................1760.503000000000000000000000000000000000000000000001001000100000000000
...............................................................TGTAGTAGTTGTTACTGTCGTTG.....................................................................2320.501000000000000000000000000001000000000000000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGT.........................................................1870.433000000000000000000000002000000000000001000000000000000000000000
..................................................................................GTTGTGCTGACAGTGTCATGC....................................................2150.402000010000000000000000001000000000000000000000000000000000000000
.......................................................................................................................TCGAGTATTGCTGGGTACCGGCTC............2450.402000000000000000000000000000000000000002000000000000000000000000
...............................................................TGTAGTAGTTGTTACTGTC.........................................................................1930.331000000000000000000000000000000000000100000000000000000000000000
................................TCCTGCAACCGCTGCTGGTAGATGC..................................................................................................2530.331001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AAGTCGAGTATTGCTGGGTACC.................2260.332000000000000000000000000100000000000001000000000000000000000000
..............................................................................TGTCGTTGTGCTGACAGTGTCATG.....................................................2460.332000000000000000000000000000100000000100000000000000000000000000
.....................................................................................................................AGTCGAGTATTGCTGGGTACCGGCTGAC..........2840.251000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCGGT..............2740.251000000000000000000000000000000000001000000000000000000000000000
......................................................................................................................GTCGAGTATTGCTGGGTACCGGCTGAC..........2740.251000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................GTCGAGTATTGCTGGGTACCGGCTGACCGC.......3040.251000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................GTCGAGTATTGCTGGGTACCGG...............2240.251000000000000000000000000000000000000001000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCATGCTGA.................................................2650.201000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................TCGAGTATTGCTGGGTACCGGCTG............2450.201000000000000000000000000000000000000001000000000000000000000000
................................................................................TCGTTGTGCTGACAGTGTCATGCCC..................................................2550.201000000000000000000000001000000000000000000000000000000000000000
..............................................................................TGTCGTTGTGCTGACAGTGTCATGC....................................................2550.201001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TCGAGTATTGCTGGGTACCGGCTGA...........2550.201000010000000000000000000000000000000000000000000000000000000000
.........................................................................................................................GAGTATTGCTGGGTACCGGCTGAC..........2450.201000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................GTCGAGTATTGCTGGGTACCG................2160.171000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................TGCGGTTGCCAAGTCGAGTATTGCT........................2560.171000000000000000000000000000000000001000000000000000000000000000
................................................................................................................TGCCAAGTCGAGTATTGCTGGGTA...................2460.171000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................TATTGCTGGGTACCGGCTGACCGT.......2460.171000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................GAGTATTGCTGGGTACCGGCTT............2260.171000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................CAAGTCGAGTATTGCTGGGTACCG................2460.171000000000000000000000000000000000001000000000000000000000000000
..........................................................................................................................AGTATTGCTGGGTACCGG...............1860.171000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCGT...............2660.171000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................AAGTCGAGTATTGCTGGGTAC..................2160.171000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................CAAGTCGAGTATTGCTGGG.....................1960.171000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................AAGTCGAGTATTGCTGGGT....................1960.171000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................GTATTGCTGGGTACCGGCTGA...........2160.171000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................ATTGCTGGGTACCGGCTGACC.........2160.171001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GCCAAGTCGAGTATTGCTGGGTACC.................2560.171000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................CAAGTCGAGTATTGCTGGGTAC..................2260.171000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................CCAAGTCGAGTATTGCTGGGTACCGTT..............2760.171000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................GTATTGCTGGGTACCGGCTGACCGC.......2560.171000000000000000000000000000000000000000000000000000000000000001
...............................................................................................................TTGCCAAGTCGAGTATTGCTGG......................2260.171000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................GTTGCCAAGTCGAGTATTGCTGGGT....................2560.171000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................ATTGCTGGGTACCGGCTCC...........19200.153000000000000000000000000000000000000000000000000000000000000003
................................................................................TCGTTGTGCTGACAGTGTCATC.....................................................2270.141000000000000000000000000000000000000001000000000000000000000000

Generated: 05/15/2015 at 06:11 PM