ID:

dvi_415

 Coordinate:

scaffold_12937:291691-291743 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.2 -13.0

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dvi_415  scaffold_12937:291692-291715 -
  2. scaffold_12954:1052492-1052515 +
  3. scaffold_12958:149476-149499 +
  4. scaffold_12970:677110-677133 +
star

Sense Strand Reads

GTGATATGGTTTTTTCATTGTCGAGTCGACTGTTTTGATTATGGTTGTTGTTGGTTCTTATAGAAAATGTTTTGAAATTGTCATTGAATTGTGGGCATCGGCAGATGTAGCGGCAGACAGTCGGGTGTTGTGTTTGCAATTTTTGTTTGCAAC
***********************************........((((((((((((.(((((((..((((............))))...))))))).)))))))......)))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060677
Argx9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060673
9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060688
160_ovaries_total
 V116
male body		 SRR060675
140x9_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060679
140x9_testes_total
 SRR060687
9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
 SRR060654
160x9_ovaries_total
 SRR060670
9_testes_total
 SRR060659
Argentina_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060655
9x160_testes_total
 SRR060666
160_males_carcasses_total
 V053
head
..............................................................................TGTCATTGAATTGTGGGCATCGGC................................................... 24 0 4 2.75 11 6 0 0 0 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................TTTGAAATTGTCATTGAATTGTGGGCA........................................................ 27 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTGTTGG................................................................................................... 21 0 14 1.86 26 0 9 2 3 0 0 1 3 2 0 0 0 0 0 0 4 0 1 0 0 1 0 0 0 0 0
.................................TTTGATTATGGTTGTTGTTG.................................................................................................... 20 0 18 1.56 28 0 8 5 4 0 0 1 3 3 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................TGTCATTGAATTGTGGGCATCGGCA.................................................. 25 0 3 1.33 4 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTCATTGAATTGTGGGCATCGG.................................................... 23 0 5 1.00 5 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TTCATTGTCGAGTCGACTGTTTTGATTA................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGTTCTTATAGAAAATGTTTTGA.............................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TGTTTTGAAATTGTCATTGAATTGTGG........................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTTGAAATTGTCATTGAATTGTGGGC......................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTTTTTG................................................................................................... 21 2 18 0.67 12 0 0 0 0 5 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGTTCTTATAGAAATTGTTTTGAA............................................................................. 26 1 3 0.67 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTGTTTG................................................................................................... 21 1 14 0.57 8 0 0 0 0 5 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTGTTGGT.................................................................................................. 22 0 11 0.55 6 0 1 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTGAAATTGTCATTGAATTGTGGGC......................................................... 25 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTCATTGAATTGTGCGCATCGGCAGAT............................................... 28 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATGTTGGGGCAGACAGTCG.............................. 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTGAAATTGTCATTGAATTGTGGG.......................................................... 24 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTCATTGAATTGTGGGCATCGGCAG................................................. 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TTGTTGGTTCTTATAGAAAACGTTTTC............................................................................... 27 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................TTGTCATTGAATTGTGGGCATCGGCAG................................................. 27 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTGAATTGTGGGCATCGGCAG................................................. 21 0 9 0.33 3 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................ATGTTTTGAAATTGTCATTGAATTG.............................................................. 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTGTTGGTTC................................................................................................ 24 0 9 0.33 3 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTTTTT.................................................................................................... 20 2 20 0.30 6 0 0 0 0 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTTTTTGT.................................................................................................. 22 2 15 0.27 4 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................TTGAAATTGTCATTGAATTGT............................................................. 21 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................TGTCATTGAATTGGGGGCATCGGC................................................... 24 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................GTTTTGATTATGGTTGTTGTTG.................................................................................................... 22 0 13 0.23 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................GATATAGCGGGAAACAGTC............................... 19 3 9 0.22 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTGTTT.................................................................................................... 20 1 18 0.22 4 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0
.............................................................................TTGTCATTGAATTGTGGGCATCG..................................................... 23 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTCATTGAATTGTGGGCATCG..................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCATTGAATTGTGGGCATCGG.................................................... 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTGTCATTGAATTGTGGGCATCGG.................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTCATTGAATTGTGGGCATCGC.................................................... 23 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTGTCATTGAATTGTGGGCATCGT.................................................... 24 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTGTTTGT.................................................................................................. 22 1 11 0.18 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GACTGGTATGATTATGGT............................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................TGTCATTGAATTGTGGGCATC...................................................... 21 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGTTGTGTTTGCAATTTTTGTTTGCA.. 26 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................TTTTGATTATGGTTGTTGTTTGT.................................................................................................. 23 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................TTTGATTATGGTTGTTGTT..................................................................................................... 19 0 18 0.11 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTGTTGGTTCT............................................................................................... 25 0 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTGAATTGTGGGCATCGGCA.................................................. 20 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................TGAATTGTGGGCATCGGCAGA................................................ 21 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TGAATTGTGGGCATCGGCAGACG.............................................. 23 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................TGAATTGTGGGCATCGGC................................................... 18 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTGTTTGTT................................................................................................. 23 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GTTTTGATTATGGTTGTTGTTGG................................................................................................... 23 0 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................TTGATTATGGTTGTTGTTGGT.................................................................................................. 21 0 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTTTTTGTTC................................................................................................ 24 2 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTGTTGGGTC................................................................................................ 24 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTCGTTTTTTGTTC................................................................................................ 24 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................GTTTTGATTATGGTTGTTG....................................................................................................... 19 0 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATAATGGTTGTTGTTGGT.................................................................................................. 22 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................GTTTTGATTATGGTTGTTGTT..................................................................................................... 21 0 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................GTTTTGATTATGGTTGGTGTTGG................................................................................................... 23 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGGTGTTGGTT................................................................................................. 23 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTGTTGGGT................................................................................................. 23 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGTTTTGATTATGGTTGTT........................................................................................................ 19 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................GTTTTGATTATGGTTGTTTTTG.................................................................................................... 22 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................TTTTGATTATGGTTGTTTTTTG................................................................................................... 22 2 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGGTGGTGGGTC................................................................................................ 24 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTTGATTATGGTTGTTTTTG.................................................................................................... 21 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................TTTGATTATGGTTGTTTTTGG................................................................................................... 21 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTGT...................................................................................................... 18 0 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGTTTGTTGTTGG................................................................................................... 21 1 18 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTGATTATGGTTGTTTTTTGT.................................................................................................. 21 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................TTTGATTATGGTTGTTTTTGTTT................................................................................................. 23 2 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TGATTATGGTTGTTGTTG.................................................................................................... 18 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTGATTATGGTTGTTGTTG.................................................................................................... 19 0 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTGACTATGGTTGTTGTTG.................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGTTTTGATTATGTTTGGTGT...................................................................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................TTTGATTATGGTTGTTTTT..................................................................................................... 19 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTTTC..................................................................................................... 19 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTGATTATGGTTGTTGTATCT.................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGATTATGGTTGTTTTTG.................................................................................................... 20 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CACTATACCAAAAAAGTAACAGCTCAGCTGACAAAACTAATACCAACAACAACCAAGAATATCTTTTACAAAACTTTAACAGTAACTTAACACCCGTAGCCGTCTACATCGCCGTCTGTCAGCCCACAACACAAACGTTAAAAACAAACGTTG
***********************************........((((((((((((.(((((((..((((............))))...))))))).)))))))......)))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
 M061
embryo
 M027
male body		 SRR060684
140x9_0-2h_embryos_total
 SRR060688
160_ovaries_total
..............AGTAACAGCTCAGCTGACAAAACTAAT................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0
.....TACCAAAAAAGTAACAGCTCAGCTGAC......................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0
....................................CTAATACCAACAACAACCAAGAAT............................................................................................. 24 0 6 0.67 4 2 0 0 1 0 0 1
.....................................................................AAAACTTTAACAGTAACTT................................................................. 19 0 4 0.25 1 1 0 0 0 0 0 0
...................................ACTAATACCAACAACAACCAAGAAT............................................................................................. 25 0 6 0.17 1 0 0 0 0 0 1 0
.................................CCACTAATACCAACAACAACCAAGAAT............................................................................................. 27 2 6 0.17 1 0 0 0 0 1 0 0
......................................TATACCAACAACAACCAAGAAT............................................................................................. 22 1 7 0.14 1 1 0 0 0 0 0 0
.......................................ATACCAACAACAACCAAGAAT............................................................................................. 21 0 7 0.14 1 1 0 0 0 0 0 0
...............................CAAAACTAATACCAACAACAACCAAGAGT............................................................................................. 29 1 7 0.14 1 0 0 0 1 0 0 0
..............................ACAAAACTAATACCAACGACAACCAAG................................................................................................ 27 1 8 0.13 1 1 0 0 0 0 0 0
........................................TACCAACAACAACCAAGAAT............................................................................................. 20 0 9 0.11 1 1 0 0 0 0 0 0
..........................GCAGACAAAACTAATACCAGA.......................................................................................................... 21 3 17 0.06 1 1 0 0 0 0 0 0
.........................................................................................................ACATCGCGGTCTAGCAGCC............................. 19 3 18 0.06 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12937:291641-291793 - dvi_415 GTGATA--TGGTT----TT------TTCATTGTCGAGTCG---ACTGTTTTGATTATGGTTGTTGTTGGTTCTTATAGAAAATGTTTTGAAATTGTCATTGAATTGTGGGCATCGGCAGATGTAGCGGCAGACAGTCGGGTGTTGTGTTTGCAATTTTTGTT--------------------------------------------------TGCAAC
droMoj3 scaffold_6540:10510697-10510755 - GAATTT--CTTAA----T----------TT-----------------TTTTGACAG-------------TTCCCATCAAAAATGTGTTGAAATTATTATTATT--------------------------------------------------------------------------------------------------G---------------T
droGri2 scaffold_15252:14999270-14999342 + GTGTTT--TGCTA----TT------GCTATTGTTGTTATT---ATTGTTATTATTATTATTGTTGTCGTTTCATCTTGAGTGT-------------------------------------------------------------------------------------------------------------------GTTT---------------T
droWil2 scf2_1100000004558:1885827-1885897 - GACTTG--GTG------TT------GTTGTTGTTGTTTCT---GTTGTTGTGTGTTTTGTTGTTGTTGTTCTGTTTCGGAAAT-------------------------------------------------------------------------------------------------------------------GGTC---------------T
dp5 XR_group6:1065349-1065428 + GTCTGCTGTTTTTCAGCAAGATATTATTAT---------------------------------TTTTGG--------------------------------------TTGTTACATAAAATGTA------------------------------------ATTAAGAAGGCA----------------TTAAGTAGCGTGCA---------------T
droPer2 scaffold_12:1744249-1744328 + GTCTGCTGTTTTTCAGCAAGATATTATTAT---------------------------------TTTTGG--------------------------------------TTGTTACATAAAATGTA------------------------------------ATTAAGAAGGCA----------------TTAAGTAGCGTGCA---------------T
droAna3 scaffold_13034:1473919-1473962 - TTTATTT-CTGAA----TG--------------------T---ACTTTTTTGATTGTGCTTATT---------------------------------ATTAGT--------------------------------------------------------------------------------------------------T---------------C
droBip1 scf7180000395931:55846-55903 + TTTCGA--TTATA----TT------TCTAATTC-AAGA----------------------------------TTATCGCAAATGTTTTTATGCTGTTATCGAA--------------------------------------------------------------------------------------------------T---------------T
droKik1 scf7180000302472:335358-335413 + TTGTTA--TTGTT----TG------TCCGTTGTTGCCTTT---GCTGTTATTGTTATTGTTGTTGCT---------------------------------------------G---------------------------------------------------------------------------------------CT---------------T
droFic1 scf7180000449205:52237-52298 - TTTTGCCCA--------------------CC---GAGTCTGCTGCATTTATT---------------------------------------------ATTGTTGTTGTTGCTGCTTAACATGTC----------------------------------------------------------------------------------------TTCAGA
droEle1 scf7180000488268:15868-15962 - TCAGCA--ATTTTG---ACGATAGGGTTGT---------------------------------TCTAAA---TCATT-AAAATACCTTGGGCCTATCATTGAAGTGTGGAAAGCTGCAAATGGACCCAGAAA------------------------------------------------------------------GAGT---------------C
droRho1 scf7180000767753:130-179 - GTGTTT--TTTTTCAGCTG----------C---------G---CCTCTTTTGTTTGTGGTTGTT---------------------------------GTTGGT---------T---------------------------------------------------------------------------------------TT---------------T
droBia1 scf7180000301518:159122-159187 + ATCGGGCGCA-------------------TC-----------------------------------------------------------------------------------GGCGCATTCATCTTCAGTCTGTTGGTTGGTAACTGCGCAAAATACGTT--------------------------------------------------TGTAAC
droTak1 scf7180000415192:230064-230140 + AGTTGCAAGCT--------------------------------------TTGAATTTGGATTTT---------------------------------GTTGGA---------------------------------------------------------TTTTTTAAAAAATCT-------------TTTGCAATCGTTCGATTTTTCCGCCTTGGC
droEug1 scf7180000408845:4892-4909 - GCAATT--TCTGG----------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------CGCAAC
droSim2 node_62275:319-397 + CATTGTTGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATGAACCGTCTTTTGCAGTGTTACTTGGATGATTGGCA---------------T
droSec2 scaffold_60:59619-59661 + ATGGTTG-TAGTT----TG--------------------------------------------------TTTATATTCAAAATGGCTTGAGGTTTTC------------------------------------------------------------------------------------------------------------------------A
droYak3 2R:4057496-4057554 + TTGTTA--TTGTT----TG------TTCGTTGTTGCTTTTACTGCTGTTATTGCTATTGTTGTT---GCC------------------------------------------G---------------------------------------------------------------------------------------CT---------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTGATA--TGGTT----TT------TTCATTGTCGAGTCG---ACTGTTTTGATTATGGTTGTTGTTGGTTCTTATAGAAAATGTTTTGAAATTGTCATTGAATTGTGGGCATCGGCAGATGTAGCGGCAGACAGTCGGGTGTTGTGTTTGCAATTTTTGTT--------------------------------------------------TGCAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................TGTCATTGAATTGTGGGCATCGGC.....................................................................................................2442.7511006000000000000000000000000000010010002000000000000000000000001
.....................................................................................TTTGAAATTGTCATTGAATTGTGGGCA..........................................................................................................2712.002000000000000000000000000000100000001000000000000000000000000000
................................................TTTGATTATGGTTGTTGTTGG.....................................................................................................................................................21141.8626000000200000000000001000302910000001340000000000000000000000000
................................................TTTGATTATGGTTGTTGTTG......................................................................................................................................................20181.5628000000300020100000000000305800010001400000000000000000000000000
.............................................................................................TGTCATTGAATTGTGGGCATCGGCA....................................................................................................2531.334001000000000000000000000011000000010000000000000000000000000000
.............................................................................................TGTCATTGAATTGTGGGCATCGG......................................................................................................2351.005004000000000000000000000000000000010000000000000000000000000000
.........................TTCATTGTCGAGTCG---ACTGTTTTGATTA..................................................................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
.................................................................TTGGTTCTTATAGAAAATGTTTTGA................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................TGTTTTGAAATTGTCATTGAATTGTGG.............................................................................................................2711.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................TTTGAAATTGTCATTGAATTGTGGGC...........................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
................................................TTTGATTATGGTTGTTGTTGGT....................................................................................................................................................22110.556000000000000000000000000000100000000500000000000000000000000000
......................................................................................TTGAAATTGTCATTGAATTGTGGGC...........................................................................................................2520.501000000000000000000000000100000000000000000000000000000000000000
......................................................................................TTGAAATTGTCATTGAATTGTGGG............................................................................................................2420.501000000000000000000000000000000010000000000000000000000000000000
.............................................................................................TGTCATTGAATTGTGGGCATCGGCAG...................................................................................................2630.331001000000000000000000000000000000000000000000000000000000000000
............................................................................................TTGTCATTGAATTGTGGGCATCGGCAG...................................................................................................2730.331000000000000000000000000001000000000000000000000000000000000000
..................................................................................................TTGAATTGTGGGCATCGGCAG...................................................................................................2190.333001000000000000000000000000010000000001000000000000000000000000
.................................................................................ATGTTTTGAAATTGTCATTGAATTG................................................................................................................2530.331000000000000000000000000001000000000000000000000000000000000000
................................................TTTGATTATGGTTGTTGTTGGTTC..................................................................................................................................................2490.333000000000000000000000000001100000000100000000000000000000000000
......................................................................................TTGAAATTGTCATTGAATTGT...............................................................................................................2140.251000010000000000000000000000000000000000000000000000000000000000
..............................................GTTTTGATTATGGTTGTTGTTG......................................................................................................................................................22130.233000000000000000000000000001010000000010000000000000000000000000
................................................TTTGATTATGGTTGTTGTTT......................................................................................................................................................20180.224000000200100000000001000000000000000000000000000000000000000000
............................................................................................TTGTCATTGAATTGTGGGCATCG.......................................................................................................2350.201000000000000000000000000000000000000001000000000000000000000000
.............................................................................................TGTCATTGAATTGTGGGCATCG.......................................................................................................2250.201001000000000000000000000000000000000000000000000000000000000000
...............................................................................................TCATTGAATTGTGGGCATCGG......................................................................................................2150.201001000000000000000000000000000000000000000000000000000000000000
............................................................................................TTGTCATTGAATTGTGGGCATCGG......................................................................................................2450.201001000000000000000000000000000000000000000000000000000000000000
.............................................................................................TGTCATTGAATTGTGGGCATCGC......................................................................................................2350.201000000000000000000000000000001000000000000000000000000000000000
............................................................................................TTGTCATTGAATTGTGGGCATCGT......................................................................................................2450.201000000000000000000000000000001000000000000000000000000000000000
.............................................................................................TGTCATTGAATTGTGGGCATC........................................................................................................2160.171001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TGTTGTGTTTGCAATTTTTGTT--------------------------------------------------TGCA..2660.171000000000000000000000000000001000000000000000000000000000000000
................................................TTTGATTATGGTTGTTGTT.......................................................................................................................................................19180.112000000000000000000000000000000000000200000000000000000000000000
................................................TTTGATTATGGTTGTTGTTGGTTCT.................................................................................................................................................2590.111000000000000000000000000100000000000000000000000000000000000000
..................................................................................................TTGAATTGTGGGCATCGGCA....................................................................................................2090.111000000000000000000000000000010000000000000000000000000000000000
...................................................................................................TGAATTGTGGGCATCGGCAGA..................................................................................................2190.111001000000000000000000000000000000000000000000000000000000000000
...................................................................................................TGAATTGTGGGCATCGGC.....................................................................................................18100.101001000000000000000000000000000000000000000000000000000000000000
..............................................GTTTTGATTATGGTTGTTGTTGG.....................................................................................................................................................23120.081000000000000000000000000000000000000010000000000000000000000000
.................................................TTGATTATGGTTGTTGTTGGT....................................................................................................................................................21120.081000000000000000000000000100000000000000000000000000000000000000
..............................................GTTTTGATTATGGTTGTTG.........................................................................................................................................................19130.081000000000000000000000001000000000000000000000000000000000000000
..............................................GTTTTGATTATGGTTGTTGTT.......................................................................................................................................................21130.081000000000000000000000000000000000000010000000000000000000000000
.............................................TGTTTTGATTATGGTTGTT..........................................................................................................................................................19150.071000000000100000000000000000000000000000000000000000000000000000
................................................TTTGATTATGGTTGTTGT........................................................................................................................................................18180.061000000000000000000000000000000000000100000000000000000000000000
..................................................TGATTATGGTTGTTGTTG......................................................................................................................................................18190.051000000000000000000000000000100000000000000000000000000000000000
.................................................TTGATTATGGTTGTTGTTG......................................................................................................................................................19190.051000000100000000000000000000000000000000000000000000000000000000
droMoj3
GAATTT--CTTAA----T----------TT-----------------TTTTGACAG-------------TTCCCATCAAAAATGTGTTGAAATTATTATTATT--------------------------------------------------------------------------------------------------G---------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTGTTT--TGCTA----TT------GCTATTGTTGTTATT---ATTGTTATTATTATTATTGTTGTCGTTTCATCTTGAGTGT-------------------------------------------------------------------------------------------------------------------GTTT---------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GACTTG--GTG------TT------GTTGTTGTTGTTTCT---GTTGTTGTGTGTTTTGTTGTTGTTGTTCTGTTTCGGAAAT-------------------------------------------------------------------------------------------------------------------GGTC---------------TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
GTCTGCTGTTTTTCAGCAAGATATTATTAT---------------------------------TTTTGG--------------------------------------TTGTTACATAAAATGTA------------------------------------ATTAAGAAGGCA----------------TTAAGTAGCGTGCA---------------TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GTCTGCTGTTTTTCAGCAAGATATTATTAT---------------------------------TTTTGG--------------------------------------TTGTTACATAAAATGTA------------------------------------ATTAAGAAGGCA----------------TTAAGTAGCGTGCA---------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TTTATTT-CTGAA----TG--------------------T---ACTTTTTTGATTGTGCTTATT---------------------------------ATTAGT--------------------------------------------------------------------------------------------------T---------------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTTCGA--TTATA----TT------TCTAATTC-AAGA----------------------------------TTATCGCAAATGTTTTTATGCTGTTATCGAA--------------------------------------------------------------------------------------------------T---------------TSizeHit CountTotal NormTotal
No Reads
droKik1
TTGTTA--TTGTT----TG------TCCGTTGTTGCCTTT---GCTGTTATTGTTATTGTTGTTGCT---------------------------------------------G---------------------------------------------------------------------------------------CT---------------TSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTGCCCA--------------------CC---GAGTCTGCTGCATTTATT---------------------------------------------ATTGTTGTTGTTGCTGCTTAACATGTC----------------------------------------------------------------------------------------TTCAGASizeHit CountTotal NormTotal
No Reads
droEle1
TCAGCA--ATTTTG---ACGATAGGGTTGT---------------------------------TCTAAA---TCATT-AAAATACCTTGGGCCTATCATTGAAGTGTGGAAAGCTGCAAATGGACCCAGAAA------------------------------------------------------------------GAGT---------------CSizeHit CountTotal NormTotal
No Reads
droRho1
GTGTTT--TTTTTCAGCTG----------C---------G---CCTCTTTTGTTTGTGGTTGTT---------------------------------GTTGGT---------T---------------------------------------------------------------------------------------TT---------------TSizeHit CountTotal NormTotal
No Reads
droBia1
ATCGGGCGCA-------------------TC-----------------------------------------------------------------------------------GGCGCATTCATCTTCAGTCTGTTGGTTGGTAACTGCGCAAAATACGTT--------------------------------------------------TGTAACSizeHit CountTotal NormTotal
No Reads
droTak1
AGTTGCAAGCT--------------------------------------TTGAATTTGGATTTT---------------------------------GTTGGA---------------------------------------------------------TTTTTTAAAAAATCT-------------TTTGCAATCGTTCGATTTTTCCGCCTTGGCSizeHit CountTotal NormTotal
No Reads
droEug1
GCAATT--TCTGG----------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------CGCAACSizeHit CountTotal NormTotal
No Reads
droSim2
CATTGTTGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATGAACCGTCTTTTGCAGTGTTACTTGGATGATTGGCA---------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................T---------------------------------ATTGGC---------------------------------------------------------TTTGATGAACCGTCTTTTGC......................................27115.001500000082410000000
.........TTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------..........................................................27411.00440000001022570000000
...............................................................T---------------------------------ATTGGC---------------------------------------------------------TTTGATGAACCGTCTTT.........................................24110.001000000001540000000
..TTGTTGATTT----------------------------------ATTTTGATTGTGGCGA............................................................................................................................................................2669.17550000002062180000000
...........T----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------..........................................................2548.75350000001210412051000
..................................................TGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGAT....................................................2647.753100010039169020000
.........................................................................................................................................................................................TACTTGGATGATTGGC.................16167.561210000000001120000000
...............................................TTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------..........................................................2346.752700000099114120000
......TGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------AT.......................................................................................................................2666.6740000000991550020000
...TGTTGATTT----------------------------------ATTTTGATTGTGGCGAA...........................................................................................................................................................2666.67400000001181281000000
...............................................TTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TT........................................................2545.7523000000001190102000
..TTGTTGATTT----------------------------------ATTTTGATTGTGGCGAA...........................................................................................................................................................2765.3332000000841181000000
.....................................................................................................................................................................TGAACCGTCTTTTGCAGTGTTACTTGGA.........................2815.00500000031010000000
..TTGTTGATTT----------------------------------ATTTTGATTGTGGC..............................................................................................................................................................2463.8323000000146300000000
...TGTTGATTT----------------------------------ATTTTGATTGTGGCGA............................................................................................................................................................2563.6722000000521041000000
.......GATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------AT.......................................................................................................................2563.502100000035552010000
................................................TTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TT........................................................2443.251300000011207020000
..................................................TGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTG......................................................2442.751100000003170000000
......TGATTT----------------------------------ATTTTGATTGTGGCGAA...........................................................................................................................................................2362.671600000097000000000
...TGTTGATTT----------------------------------ATTTTGATTGTGGC..............................................................................................................................................................2362.671600000094300000000
...TGTTGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------A........................................................................................................................2862.671600000035620000000
.........................................................................................................................................................................................TACTTGGATGATTGGCA---------------.17152.4036000000512028000000
......TGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------A........................................................................................................................2562.331400000047120000000
................................................TTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTT.......................................................2542.25900000032004000000
..................................................TGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATG...................................................2742.25900000007101000000
..TTGTTGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------A........................................................................................................................2962.171300000070600000000
................................................................................................................................................................TTTGATGAACCGTCTTTTGC......................................2012.00200000000101000000
...............................................TTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------T.........................................................2442.00800000000111050000
.................................................TTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGAT....................................................2742.00800000013121000000
................................................TTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------T.........................................................2342.00800000031013000000
..................................................................................................TTGGC---------------------------------------------------------TTTGATGAACCGTCTTTTGC......................................2512.00200000020000000000
..TTGTTGATTT----------------------------------ATTTTGATTGTGG...............................................................................................................................................................2361.831100000090110000000
................................................TTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGA.....................................................2741.75700000001222000000
..................................................TGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGA.....................................................2541.75700000002122000000
..TTGTTGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------.........................................................................................................................2861.50900000012600000000
.................................................TTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGA.....................................................2641.25500010000112000000
..TTGTTGATTT----------------------------------ATTTTGATTGTGGCG.............................................................................................................................................................2561.17700000020311000000
.................................................................................................................................................................................TGCAGTGTTACTTGGATGATTGGCA---------------.2511.00100000000001000000
................................................................................................................................................................TTTGATGAACCGTCTTTTGCAGAA..................................2411.00100000010000000000
.................................................................................................................................................................TTGATGAACCGTCTTTTGCAGT...................................2211.00100000000100000000
............................................................GAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATGAACCGTCTT..........................................2611.00100000000001000000
...............................................................T---------------------------------ATTGGC---------------------------------------------------------TTTGATGAACCGTCT...........................................2211.00100000000001000000
..............................................................................................................................................................................TTTTGCAGTGTTACTTGGATGATTGGCA---------------.2811.00100000000001000000
..................................................TGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TT........................................................2241.00400000001001020000
.....................................................TTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATGAACC...............................................2811.00100000000100000000
......TGATTT----------------------------------ATTTTGATTGTGGCGA............................................................................................................................................................2260.83500000012200000000
.......GATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------..........................................................2940.75300000003000000000
..........TT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------..........................................................2640.75300000001110000000
..................................................TGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------T.........................................................2140.75300000001011000000
...............................................TTTTGATTGTGGCGAAT---------------------------------ATTGG....................................................................................................................2240.75300000000021000000
..............................................ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TT........................................................2640.75300000000001011000
..........TT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGG....................................................................................................................2540.75300000002000010000
...............................................TTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTG......................................................2740.75300000000201000000
...........T----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TT........................................................2740.75300000001101000000
................................................TTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGAT....................................................2840.75300010020000000000
.................................................TTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TT........................................................2340.75300000010001010000
......TGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------.........................................................................................................................2460.67400000003010000000
...TGTTGATTT----------------------------------ATTTTGATTGTGG...............................................................................................................................................................2260.67400000001300000000
.....TTGATTT----------------------------------ATTTTGATTGTGGCGA............................................................................................................................................................2360.67400000002000020000
.........................................................................................................................................................................................TACTTGGATGATTGG..................15160.6310000000000010000000
......................................................TGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATGA..................................................2470.57400000000130000000
.........................................................................................................................................................................................TACTTGGATGATTGGCA---------------T18150.53800000011105000000
...............................................TTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTT.......................................................2640.50200000000110000000
...TGTTGATTT----------------------------------ATTTTGATTGTGGCG.............................................................................................................................................................2460.50300000010200000000
..................................................TGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------..........................................................2040.50200000000002000000
......TGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATT......................................................................................................................2760.50300000011010000000
...TGTTGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------.........................................................................................................................2760.50300000010020000000
.........TTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------T.........................................................2840.50200000001000010000
.................................................TTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTT.......................................................2440.50200010001000000000
...............................................TTTTGATTGTGGCGAAT---------------------------------ATT......................................................................................................................2060.50300000000003000000
..................................................TGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATGA..................................................2840.50200000000020000000
..................................................TGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTT.......................................................2340.50200000000002000000
...............................................TTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGA.....................................................2840.50200000020000000000
..TTGTTGATTT----------------------------------ATTTTGATTGTGGCGAT...........................................................................................................................................................2760.50300000010110000000
..................................................................................................................................................................................GCAGTGTTACTTGGT.........................1520.50100000000100000000
.ATTGTTGATTT----------------------------------ATTTTGATTGTGGC..............................................................................................................................................................2560.50300100011000000000
.......GATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATT......................................................................................................................2660.50300000011100000000
................................................TTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTG......................................................2640.50200000001001000000
.....................................................TTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATGA..................................................2540.50200000010001000000
......................................................................................................................................................................................TGTTACTTGGATGATTGGC.................19140.36500000000005000000
.........TTT----------------------------------ATTTTGATTGTGGCGA............................................................................................................................................................1960.33200000010100000000
.......GATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------A........................................................................................................................2460.33200000000002000000
..................................................TGATTGTGGCGAAT---------------------------------ATTG.....................................................................................................................1860.33200000000002000000
...............................................TTTTGATTGTGGCGAAT---------------------------------A........................................................................................................................1860.33200000000002000000
..................................................TGATTGTGGCGAAT---------------------------------ATT......................................................................................................................1760.33200000000002000000
....GTTGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------A........................................................................................................................2760.33200000002000000000
..TTGTTGATTT----------------------------------ATTTTGATTGTGGCGAAA---------------------------------.........................................................................................................................2860.33200000010100000000
....GTTGATTT----------------------------------ATTTTGATTGTGGCGAA...........................................................................................................................................................2560.33200000011000000000
.....TTGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------.........................................................................................................................2560.33200000000200000000
................................................TTTGATTGTGGCGAAT---------------------------------AT.......................................................................................................................1860.33200000000002000000
................................................TTTGATTGTGGCGAAT---------------------------------.........................................................................................................................1660.33200000000002000000
.........TTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTG.....................................................................................................................2560.33200000000011000000
.......................................................GTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGAT....................................................2170.29200000000002000000
................................................TTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGG.....................................................2740.25100100000000000000
..................................................TGATTGTGGCGAAT---------------------------------ATTGGT---------------------------------------------------------..........................................................2040.25100000000001000000
...............................................TTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------AA........................................................2540.25100000000000010000
................................................TTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------..........................................................2240.25100000010000000000
.........TTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGG....................................................................................................................2640.25100000010000000000
..................................................TGATTGTGGCGAAT---------------------------------ATTGG....................................................................................................................1940.25100000000001000000
.....................................................TTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATGAA.................................................2640.25100000000001000000
................................................TTTGATTGTGGCGAAT---------------------------------ATTGG....................................................................................................................2140.25100000010000000000
................................................TTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------GG........................................................2440.25100000000001000000
.................................................TTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTG......................................................2540.25100000001000000000
..........TT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------T.........................................................2740.25100000000010000000
...........T----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------T.........................................................2640.25100000000000010000
...........T----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGG....................................................................................................................2440.25100000000001000000
................................................TTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATG...................................................2940.25100000001000000000
.........TTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TT........................................................2940.25100000000010000000
...................................................GATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGA.....................................................2440.25100010000000000000
..........................................................................................................................................................................................ACTTGGATGATTGGC.................15160.25400000000004000000
..............................................ATTTTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------..........................................................2440.25100000000001000000
.................................................TTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATGA..................................................2940.25100000001000000000
......................................................................................................................................................................................TGTTACTTGGATGATT....................16180.22400000000004000000
........................................................TGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATG...................................................21100.20200000000001010000
...TGTTGATTT----------------------------------ATTTTGATTGTGGCA.............................................................................................................................................................2460.17100000000100000000
......TGATTT----------------------------------ATTTTGATTGTGGCGAAA---------------------------------.........................................................................................................................2460.17100000010000000000
.....TTGATTT----------------------------------ATTTTGATTGTGGCGAA...........................................................................................................................................................2460.17100000010000000000
.................................................TTGATTGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTT......................................................2560.17100000000001000000
...TGTTGATTT----------------------------------ATTTTGATTGTGGCGC............................................................................................................................................................2560.17100000001000000000
.....TTGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------A........................................................................................................................2660.17100000001000000000
..................................................TGATTGTGGCGAAT---------------------------------A........................................................................................................................1560.17100000000001000000
.................................................TTGATTGTGGCGAAT---------------------------------ATT......................................................................................................................1860.17100000000001000000
....GTTGATTT----------------------------------ATTTTGATTGTGGC..............................................................................................................................................................2260.17100000000010000000
......TGATTT----------------------------------ATTTTGATTGTGG...............................................................................................................................................................1960.17100000000100000000
..........TT----------------------------------ATTTTGATTGTGGCGA............................................................................................................................................................1860.17100000010000000000
...TGTTGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------AT.......................................................................................................................2960.17100000000100000000
...........T----------------------------------ATTTTGATTGTGGCGAAT---------------------------------.........................................................................................................................1960.17100000000001000000
...............................................TTTTGATTGTGGCGAAT---------------------------------ATTG.....................................................................................................................2160.17100000001000000000
.......GATTT----------------------------------ATTTTGATTGTGGCGA............................................................................................................................................................2160.17100000000000001000
..TTGTTGATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------AT.......................................................................................................................3060.17100000000100000000
..TTGTTGATTT----------------------------------ATTTTGATTGTGGCGT............................................................................................................................................................2660.17100000000100000000
.......GATTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------ATTG.....................................................................................................................2760.17100000010000000000
.....TTGATTT----------------------------------ATTTTGATTGTGG...............................................................................................................................................................2060.17100000000010000000
..........TT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------AT.......................................................................................................................2260.17100000000000010000
.........TTT----------------------------------ATTTTGATTGTGGCGAAT---------------------------------AT.......................................................................................................................2360.17100000001000000000
...............................................TTTTGATTGTGGCGAAT---------------------------------AT.......................................................................................................................1960.17100000000001000000
...............................................................T---------------------------------ATTGGC---------------------------------------------------------TTTGATGA..................................................15130.15200000011000000000
......................................................TGTGGCGAAT---------------------------------ATTGG....................................................................................................................1570.14100000000001000000
......................................................................................................................................................................................TGTTACTTGGATGATTGG..................18140.14200000000002000000
......................................................TGTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------T.........................................................1770.14100000000001000000
.......................................................GTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TT........................................................1780.13100000000001000000
.......................................................GTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTT.......................................................1880.13100000000001000000
.......................................................GTGGCGAAT---------------------------------ATTGGC---------------------------------------------------------G.........................................................1690.11100000000001000000
.........................................................................................................................................................................................TACTTGGATGATTGGT.................16180.11200000000002000000
.......................................................................................................................................................................................GTTACTTGGATGATTG...................16180.11200000000002000000
........................................................TGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTG......................................................18100.10100000000001000000
........................................................TGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGAT....................................................20100.10100000000001000000
.........................................................GGCGAAT---------------------------------ATTGGC---------------------------------------------------------TT........................................................15110.09100000000001000000
........................................................TGGCGAAT---------------------------------ATTGGC---------------------------------------------------------TT........................................................16110.09100000000001000000
.....................................................................................................................................................................................GTGTTACTTGGATGATTGG..................19110.09100000000001000000
........................................................TGGCGAAT---------------------------------ATTGGC---------------------------------------------------------T.........................................................15110.09100000000001000000
..........................................................GCGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGA.....................................................17110.09100000000001000000
..........................................................GCGAAT---------------------------------ATTGGC---------------------------------------------------------TTT.......................................................15120.08100000000001000000
.......................................................................................................................................................................................GTTACTTGGATGATTGGCA---------------T20130.08100000000010000000
........................................................................................................................................................................................TTACTTGGATGATTGGC.................17140.07100000000001000000
........................................................................................................................................................................................TTACTTGGATGATTGG..................16140.07100000000001000000
.....................................................................................................................................................................................GTGTTACTTGGATGA......................15150.07100000000001000000
...........................................................CGAAT---------------------------------ATTGGC---------------------------------------------------------TTTGAT....................................................17150.07100000000001000000
..........................................................................................................................................................................................ACTTGGATGATTGGCA---------------.16150.07100000000001000000
............................................................GAAT---------------------------------ATTGGC---------------------------------------------------------TTTGATG...................................................17160.06100000000001000000
.........................................................................................................................................................................................TACTTGGATGATTGGCA---------------A18160.06100000000010000000
.......................................................................................................................................................................................GTTACTTGGATGATT....................15180.06100000000001000000
.........................................................................................................................................................................................TACTTGGATGATTGGGC---------------.17200.05100000000001000000
droSec2
ATGGTTG-TAGTT----TG--------------------------------------------------TTTATATTCAAAATGGCTTGAGGTTTTC------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................ATTCAAAATGGCTTGAGGT.............................................................................................................................1911.0010010
droYak3
TTGTTA--TTGTT----TG------TTCGTTGTTGCTTTTACTGCTGTTATTGCTATTGTTGTT---GCC------------------------------------------G---------------------------------------------------------------------------------------CT---------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 05/15/2015 at 06:11 PM