dvi_410

Species	Coordinate	ID	Alignment
droVir3	scaffold_12928:2234332-2234515 -	dvi_410	AA------------------GTCATATCTCT-------------------------A-----------T--TTCAAAAAAAAAAACGTGATGATTTGG-----AGTTATGTCGTT-TTGGAACG----------------------------------------TCATATCTCC-CGCGGAGTTATGTCGTTTTGGAACGT-----------------------------CATATTTCCGCGCGGAGTTATGGCGTTTTGGAACGTCAAATCTCCGCGCGGAGTTATGTCG-------------------------TTTTGGAA-GAT-CATA----TCTCC--GCGGA
droGri2	scaffold_14822:977090-977145 +		AG------------------CTCAAATTTCA-------------------------A-----------T--TTAAAAAAAAATAACTTACAAATATAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TTT-TATA----TTTT-------T
droWil2	scf2_1100000004909:811400-811569 -		GGTTTATT------------ATTATATCATC-------------------------GCCGGTGATTTGC--G-------C----------------GG-----AGATATGTCGTT-TCAAAACG----------------------------------------TCATATCTCCGCCGT-----------TAAAAAAACGA-----------------------------CATATCTCCGCGCGAAATTATGTCGTTTCAGAACGACATATCTCCGCGCGAAATTATGTCG-------------------------TTTCAGAA-CGA-CATA----TCTCCGCGCGGA
dp5	Unknown_group_161:17040-17213 +		C----------------------ATATCTCCGCCGATCCACAAACGACATATCTCCG-----------T--C-----------------------CGA-----AATTATGTAATT-TT----------------------------------------------------------------------------AAAGCGA-----------------------------CATACCTCCGCGCGGAGATATGTCATCTCAAAACGTCATAGCTCCGCGCGGAGATATGTCGTTTGTGGAACGGCGGAGATATGTCGTTTCAAAA-CGT-CATA----TCTTCGCGCGGA
droPer2	scaffold_166:88373-88525 -		AC------------------GACATATCTCC-------------------------G-----------C--G-------C----------------GG-----AGATATGACGTT-TTGAAACG----------------------------------------ACATATCTCCGCCGT-----------TCCACAAACGA-----------------------------CATATCTCCGCGCGGAGTTATGACGTTTTGAGACGACATATCTCCGCGCGGAGGTATGTCG-------------------------CTTTAAAA-CGA-CATA----ATTTCGCGCGGA
droAna3	scaffold_4855:754-788 -		AT------------------ATTTTTATTT-------------------------------------------CAAACAAAAAAACATTTTTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396713:10036-10076 -		AT------------------ATCATATTTCC-------------------------A-----------T--CTTAAAAAAAAAATTGTGTCGCTTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302704:11163-11338 +		AC------------------GACATATCTCCGCCAAACTAGAAACGACATATCTCCG-----------C--G-------C----------------GG-----AGTTATGTCGCT-CTAAAGCG----------------------------------------ACATATCTCCGCCGA-----------ACTAGAAACGA-----------------------------CATATCTCCGCGCGGAGCTATGTCGTTTTAAAGTGACATAACTCCGCGCGGAGGTATGTCG-------------------------TTGCTTA--CGACAACA----GCTCC--CCAGA
droEle1	scf7180000489519:6981-7167 +		AC------------------GACATAAGTCC-------------------------GGCACAAA----------------------------------------------TAGTT-TTAAAACG----------------------------------------ACATAATTTCGCGCGAACTTATGTCGCTTAGCAG--TTTATTCTGCGGCTACCGAAATTATGTCGTTTTTTCTAC-GGCGGACTTATGGCGTTCTCAAACGTCATTAGATCGAGCGAAATTATGTCG-------------------------TTTTAAAA-CGG-CTGAATTATGTCG--GTGGA
droRho1	scf7180000759646:438-600 -		GC------------------GACACAGCTCC-------------------------CCCATTGACTAAC--G-------C----------------GG-----AGTTATGTCGTC-TAAAAACG----------------------------------------ACATATCTCCGCGGGGAGATATGACGTTTAAAAACGA-----------------------------CATATCTCCGCTCGAAAATATTTCGTTTTA-AACGACATATCTCCGCGCGGAGATATGTCGTTTG------------------------TAGAA-GG-----------------GCGGA
droBia1	scf7180000301585:66987-67139 -		AAC-----------------GTCATATCTCC-------------------------G-----------T--G-------C----------------GG-----AGTTATGTCGCTTTTAAAACG----------------------------------------ACATATCTCCGCTGA-----------ACAAAAAGCGA-----------------------------AATATTTCCGCGCGGAGATATGACATTTCAAGACGACATATCTCCGCGCGGAGTTATGTCG-------------------------CTATGAAA-AAA-TACA----TCTCC--GCCGA
droTak1	scf7180000415995:47977-48155 -		AC------------------GACATATCTCC-------------------------CCCGTTAATCAAC--G-------C----------------GG-----AGATATGACGTT-TAAAAACG----------------------------------------ACATATCTTCGCCATGTGATGTGACGTTTAAAAACGA-----------------------------AATATTTTCGCGCGGAGATATGTCGCTTTTAAACGTCATATCTCAGCGCGGAGATATGTCGTTCGCAG--------------------ATGGGC-GGA-GATA----TGTC-GCGCGGA
droEug1	scf7180000409349:14088-14121 +		TT-----------------------------------------------------------------------TAAAACAAAAAAAATAATGATTTTG-----AAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-------------------------------------------------------------G
droSim2	node_40559:445-497 +		AT------------------ACCGTTCTTT-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTCGT
droSec2	scaffold_6136:1234-1286 -		AT------------------ACCGTTCTTT-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTCGT
droYak3	2L:20314038-20314242 -		GATGATGTATCTCCAAAAACGACACATCTCC-------------------------GCCGATAATAAGCTGG-------A----------------TG-----AGTTGTGTCGTTTTCAAAACGACATATCTCCTCCCGAAGTTTTTTGAGTTCGGAGGAGATA---------TGTCGT-----------TTTCAAAGCGA-----------------------------CATATCTCATC-CGAAA----------TTAAAACGACATACCTCCTAGCGGAGATATGTCG-------------------------TTTTGAAAACGA-TTTA---ATTTC-G-GATGA
droEre2	scaffold_4690:18024892-18025053 -		----------------------CATATCTCC-------------------------GTCCTTTTCTTATTGG-------T----------------GG-----AGTTATGTCGCTTTAAAAACG----------------------------------------ATATATTTCCGTCAA-----------ACTAAAAACGA-----------------------------CATATCTCCGCGCGGAACTTTGTTGTTTTACAACGACATTATTCCGCGCAGAGATATGACG-------------------------TTTCAT-A-GGA-CATA----ACTCCGTGAGGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AA------------------GTCATATCTCT-------------------------A-----------T--TTCAAAAAAAAAAACGTGATGATTTGG-----AGTTATGTCGTT-TTGGAACG----------------------------------------TCATATCTCC-CGCGGAGTTATGTCGTTTTGGAACGT-----------------------------CATATTTCCGCGCGGAGTTATGGCGTTTTGGAACGTCAAATCTCCGCGCGGAGTTATGTCG-------------------------TTTTGGAA-GAT-CATA----TCTCC--GCGGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................TATTTCCGCGCGGAGTTATGGCG..............................................................................................	23	3	3.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	5	0
........................................................................................................................................................................................................................................TATTTCCGCGCGGAGTTATGG................................................................................................	21	3	1.33	4	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TATTTCCGCGCGGAGTTATGGC...............................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TCATATCTCC-CGCGGAGTTATG..................................................................................................................................................................	22	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AACGTGATGATTTGG-----AGTTATGT..............................................................................................................................................................................................................................................	23	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TTGGAACG----------------------------------------TCATATCTCC-CGCG..........................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................TATCTCC-CGCGGAGTTATGTCG...............................................................................................................................................................	22	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CGT-----------------------------CATATTTCCGCGCGGAGT.....................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................TTGGAACGT-----------------------------CATATTTCCGCG...........................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AAAAAAACGTGATGATTTGG-----A.....................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CC-CGCGGAGTTATGTCGT..............................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................GAACG----------------------------------------TCATATCTCC-CGCGGA........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GAGTTATGGCGTTTTGGAACG....................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TTTGGAACGTCAAATCTCCGCGCGGAGT.................................................................	28	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TTTGGAACGT-----------------------------CATATTTCCGCG...........................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGGAACGT-----------------------------CATATTTCCGCGC..........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AG------------------CTCAAATTTCA-------------------------A-----------T--TTAAAAAAAAATAACTTACAAATATAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TTT-TATA----TTTT-------T	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GGTTTATT------------ATTATATCATC-------------------------GCCGGTGATTTGC--G-------C----------------GG-----AGATATGTCGTT-TCAAAACG----------------------------------------TCATATCTCCGCCGT-----------TAAAAAAACGA-----------------------------CATATCTCCGCGCGAAATTATGTCGTTTCAGAACGACATATCTCCGCGCGAAATTATGTCG-------------------------TTTCAGAA-CGA-CATA----TCTCCGCGCGGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................TGC--G-------C----------------GG-----AGATATGTCGTT-TCAAAA...................................................................................................................................................................................................................................	25	20	0.25	5	0	4	0	1	0
..................................................................TGC--G-------C----------------GG-----AGATATGTCGTT-TCAAAACG----------------------------------------.........................................................................................................................................................................................	27	20	0.25	5	0	0	0	4	1
..............................................................................................................................................................................................TAAAAAAACGA-----------------------------CATATCTCCGCGCGAA.......................................................................................................	27	5	0.20	1	0	1	0	0	0
..TTTATT------------ATTATATCATC-------------------------GCCGGTGATT...........................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	0	0	1	0
..............................................................GATTTGC--G-------C----------------GG-----AGATATGTCGTT-TA.......................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0
..................................................................TGC--G-------C----------------GG-----AGATATGTCGTT-TCA......................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................TCAGAACGACATATCTCCGCGCGAA...................................................................	25	13	0.08	1	0	1	0	0	0
.................................................................................................................TT-TCAAAACG----------------------------------------TCATATCTC................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................CGCGCGAAATTATGTCG-------------------------TTTCAGAA-CG......................	27	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................GCGCGAAATTATGTCG-------------------------TTTCAGAA-CGA-C...................	28	20	0.05	1	0	1	0	0	0
..................................................................................................................T-TCAAAACG----------------------------------------TCATATCTCCGCCCC-----------...............................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..................................................................TGC--G-------C----------------GG-----AGATATGTCGTT-TCAAAAC..................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0

dp5

C----------------------ATATCTCCGCCGATCCACAAACGACATATCTCCG-----------T--C-----------------------CGA-----AATTATGTAATT-TT----------------------------------------------------------------------------AAAGCGA-----------------------------CATACCTCCGCGCGGAGATATGTCATCTCAAAACGTCATAGCTCCGCGCGGAGATATGTCGTTTGTGGAACGGCGGAGATATGTCGTTTCAAAA-CGT-CATA----TCTTCGCGCGGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAAC................................................	21	3	767.00	2301	0	232	0	0	0	0	2	1863	203	1
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACG...............................................	22	3	661.00	1983	0	69	0	0	0	0	0	1856	58	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAA.................................................	21	3	534.00	1602	0	27	0	0	0	0	0	1503	71	1
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACG...............................................	21	3	509.67	1529	0	110	0	0	0	0	0	1403	16	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACGG..............................................	22	3	487.33	1462	0	210	0	0	0	0	0	1235	17	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAAC................................................	20	3	439.00	1317	0	156	0	0	0	0	0	1113	48	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACGG..............................................	23	3	393.33	1180	0	44	0	0	0	0	0	1100	36	0
..........................................................................................................................................................................................................................................................................................GATATGTCGTTTGTGGAACGG..............................................	21	3	144.33	433	0	104	0	0	0	0	4	318	7	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAA.................................................	20	3	98.00	294	0	21	0	0	0	0	0	222	50	1
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAGA........................................	20	3	61.33	184	0	47	0	0	0	1	0	134	2	0
..................................GATCCACAAACGACATATCTCC.....................................................................................................................................................................................................................................................................................................	22	3	60.00	180	0	156	0	0	0	0	0	22	2	0
.....................................................................................................................................................................................................................................................................................GCGGAGATATGTCGTTTGTGG...................................................	21	5	56.00	280	0	21	0	0	0	0	0	239	20	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGA..................................................	20	6	52.00	312	0	18	0	0	0	0	0	260	34	0
................................................................................................................................................................................................................................................................................................TCGTTTGTGGAACGGCGGAGA........................................	21	3	51.00	153	0	39	0	0	0	0	0	114	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAA.................................................	19	3	46.33	139	0	24	0	0	0	0	0	92	23	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAG.........................................	19	3	45.33	136	0	26	0	0	0	0	0	104	6	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACGGT.............................................	23	3	36.67	110	0	4	0	0	0	0	0	94	12	0
................................................................................................................................................................................................................................................................................................TCGTTTGTGGAACGGCGGAG.........................................	20	3	31.00	93	0	21	0	0	0	0	0	68	4	0
...........................................................................................................................................................................................................................................................................................ATATGTCGTTTGTGGAACGG..............................................	20	3	30.00	90	0	21	0	0	0	0	0	69	0	0
..........................................................................................................................................................................................................................................................................................GATATGTCGTTTGTGGAACG...............................................	20	3	28.00	84	0	20	0	0	0	0	0	59	5	0
..................................................................................................................................................................................................................................................................................................GTTTGTGGAACGGCGGAGA........................................	19	3	27.33	82	0	22	0	0	0	0	0	59	1	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAAA................................................	22	3	26.67	80	0	1	0	0	0	0	0	78	1	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAGATA......................................	22	3	20.67	62	0	8	0	0	0	0	0	54	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACGT..............................................	22	3	20.00	60	0	1	0	0	0	0	0	56	3	0
........................TATCTCCGCCGATCCACAAACGACA............................................................................................................................................................................................................................................................................................................	25	3	17.67	53	0	52	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................ATATGTCGTTTGTGGAACGGC.............................................	21	3	17.67	53	0	11	0	0	0	0	0	42	0	0
................................................................................................................................................................................................................................................................................................TCGTTTGTGGAACGGCGGA..........................................	19	3	16.33	49	0	12	0	0	0	0	0	31	6	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAGAT.......................................	21	3	16.33	49	0	27	0	0	0	0	1	21	0	0
......................................................................................................................................................................................................................................................................................CGGAGATATGTCGTTTGTGGA..................................................	21	6	15.67	94	0	4	0	0	0	0	0	79	11	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACGGT.............................................	24	3	15.33	46	0	1	0	0	0	0	0	43	2	0
..................................GATCCACAAACGACATATCTC......................................................................................................................................................................................................................................................................................................	21	3	13.00	39	0	34	0	1	0	0	1	3	0	0
..........................TCTCCGCCGATCCACAAACGA..............................................................................................................................................................................................................................................................................................................	21	3	11.00	33	0	30	0	0	0	0	0	3	0	0
..................................................................................................................................................................................................................................................................................................GTTTGTGGAACGGCGGAGAT.......................................	20	3	10.00	30	0	16	0	0	0	0	0	13	1	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGA..........................................	18	3	9.67	29	0	18	0	0	0	1	0	10	0	0
..........................................................................................................................................................................................................................................................................................GATATGTCGTTTGTGGAAC................................................	19	3	9.67	29	0	10	0	0	0	1	0	18	0	0
...................................ATCCACAAACGACATATCTCC.....................................................................................................................................................................................................................................................................................................	21	3	9.00	27	0	25	0	0	0	0	0	2	0	0
....................................................................................................................................................................................................................................................................................CGCGGAGATATGTCGTTTGTGG...................................................	22	5	8.20	41	0	6	0	0	0	0	0	35	0	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAG.................................................	21	6	7.33	44	0	2	0	0	0	0	0	41	1	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAGT........................................	20	3	7.33	22	0	14	0	0	0	1	1	4	2	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACGGTT............................................	24	3	7.00	21	0	0	0	0	0	0	0	20	1	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGA..................................................	19	6	6.83	41	0	8	0	0	0	0	0	28	5	0
...........................................................................................................................................................................................................................................................................................ATATGTCGTTTGTGGAACG...............................................	19	3	6.33	19	0	7	0	0	0	0	0	12	0	0
............................................................................................................................................................................................................................................................................................TATGTCGTTTGTGGAACGGC.............................................	20	3	6.00	18	0	13	0	0	0	0	0	5	0	0
............................TCCGCCGATCCACAAACGACATATC........................................................................................................................................................................................................................................................................................................	25	3	5.67	17	0	13	3	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GTTTGTGGAACGGCGGAGATA......................................	21	3	5.67	17	0	8	0	0	0	0	0	9	0	0
........................TATCTCCGCCGATCCACAAACGAC.............................................................................................................................................................................................................................................................................................................	24	3	5.67	17	0	14	3	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACT...............................................	22	3	5.33	16	0	0	0	0	0	0	0	14	2	0
..................................................................................................................................................................................................................................................................................................GTTTGTGGAACGGCGGAG.........................................	18	3	5.33	16	0	6	0	0	0	0	0	8	2	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAGATT......................................	22	3	5.00	15	0	5	0	0	0	0	0	10	0	0
.....................................................................................................................T----------------------------------------------------------------------------AAAGCGA-----------------------------CATACCTCCGCGCGGAGA.....................................................................................................	26	4	4.75	19	0	10	2	0	6	0	1	0	0	0
......................................................................................................................................................................................................................................................................................CGGAGATATGTCGTTTGTGG...................................................	20	6	4.67	28	0	5	0	0	0	0	0	15	8	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAGAC.......................................	21	3	4.67	14	0	0	0	0	0	0	0	14	0	0
..........................TCTCCGCCGATCCACAAACGAC.............................................................................................................................................................................................................................................................................................................	22	3	4.67	14	0	12	0	0	0	0	0	2	0	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGG...................................................	19	6	4.50	27	0	3	0	0	0	0	0	11	13	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGA..................................................	18	6	4.33	26	0	7	0	0	0	0	0	17	2	0
..................................................................................................................................................................................................................................................................................................GTTTGTGGAACGGCGGAGATT......................................	21	3	4.33	13	0	10	0	0	0	0	0	2	1	0
..........................................................................................................................................................................................................................................................................................GATATGTCGTTTGTGGAACGGT.............................................	22	3	4.33	13	0	0	0	0	0	0	0	11	2	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACC...............................................	22	3	4.33	13	0	1	0	0	0	0	0	11	1	0
....................................TCCACAAACGACATATCTCCG-----------.........................................................................................................................................................................................................................................................................................	21	6	4.33	26	0	22	0	0	0	0	0	4	0	0
..................................GATCCACAAACGACATATCTCCG-----------.........................................................................................................................................................................................................................................................................................	23	3	4.00	12	0	8	0	0	0	0	0	4	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACGGC.............................................	24	3	4.00	12	0	1	0	0	0	0	0	10	1	0
........................TATCTCCGCCGATCCACAAACGA..............................................................................................................................................................................................................................................................................................................	23	3	4.00	12	0	12	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGTCGTTTGTGGAACGG..............................................	19	3	3.67	11	0	3	0	0	0	0	0	8	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACA...............................................	22	3	3.67	11	0	0	0	0	0	0	0	11	0	0
...................................ATCCACAAACGACATATCTC......................................................................................................................................................................................................................................................................................................	20	3	3.67	11	0	11	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGTCGTTTGTGGAACGGCGT...........................................	22	3	3.33	10	0	0	0	0	0	0	0	10	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGG...................................................	18	6	3.33	20	0	3	0	0	0	0	0	17	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACT...............................................	21	3	3.33	10	0	2	0	0	0	0	0	7	1	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACGTT.............................................	23	3	3.00	9	0	0	0	0	0	0	0	9	0	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAAT................................................	22	3	2.67	8	0	0	0	0	0	0	0	8	0	0
.............................................................................................................................................................................................................................................................................................ATGTCGTTTGTGGAACGGCGG...........................................	21	3	2.67	8	0	5	0	0	0	0	0	3	0	0
....................................................................................................................................................................................................................................................................AAACGTCATAGCTCCGCGCGG....................................................................	21	2	2.50	5	0	1	0	0	0	0	0	4	0	0
...........................................................................................................................................................................................................................................................................................ATATGTCGTTTGTGGAACGT..............................................	20	3	2.33	7	0	0	0	0	0	0	0	7	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAAA................................................	21	3	2.33	7	0	0	0	0	0	0	0	5	2	0
............................TCCGCCGATCCACAAACGACATATCTC......................................................................................................................................................................................................................................................................................................	27	3	2.33	7	0	7	0	0	0	0	0	0	0	0
...........................CTCCGCCGATCCACAAACGAC.............................................................................................................................................................................................................................................................................................................	21	3	2.33	7	0	7	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGTCGTTTGTGGAACGGCGG...........................................	20	3	2.33	7	0	7	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAGATAAAA...................................	25	3	2.00	6	0	0	0	0	0	0	0	6	0	0
...................................................................................................................................................................................................................................................................................................TTTGTGGAACGGCGGAGATA......................................	20	3	2.00	6	0	5	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGT..........................................	18	3	2.00	6	0	5	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGTCGTTT.......................................................	21	14	2.00	28	0	26	0	0	0	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACA...............................................	21	3	2.00	6	0	0	0	0	0	0	0	6	0	0
.......................................................................................................................................................................................................GA-----------------------------CATACCTCCGCGCGGAGAT....................................................................................................	21	4	2.00	8	0	2	0	1	5	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACGGA.............................................	24	3	2.00	6	0	0	0	0	0	0	0	6	0	0
................................................................................................................................................................................................................................................................................................TCGTTTGTGGAACGGCGGAGAT.......................................	22	3	2.00	6	0	3	0	0	0	0	0	3	0	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAC.................................................	21	6	1.83	11	0	0	0	0	0	0	0	11	0	0
..................................GATCCACAAACGACATATCT.......................................................................................................................................................................................................................................................................................................	20	3	1.67	5	0	5	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GATATGTCGTTTGTGGAA.................................................	18	3	1.67	5	0	2	0	0	0	0	0	2	1	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACGGTT............................................	25	3	1.67	5	0	0	0	0	0	0	0	5	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACGGCGGAG.........................................	28	3	1.67	5	0	0	0	0	0	0	0	5	0	0
..........................................................................................................................................................................................................................................................................................GATATGTCGTTTGTGGAACGGTT............................................	23	3	1.67	5	0	1	0	0	0	0	0	4	0	0
..................................................................................................................................................................................................................................................................................................GTTTGTGGAACGGCGGA..........................................	17	3	1.67	5	0	0	0	0	0	0	0	5	0	0
..................................................................................................................................................................................................................................................................................................GTTTGTGGAACGGCGGAGT........................................	19	3	1.67	5	0	5	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTCGTT........................................................	25	8	1.63	13	0	13	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAGAA.......................................	21	3	1.33	4	0	3	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACGC..............................................	23	3	1.33	4	0	0	0	0	0	0	0	4	0	0
...............................................................................................................................................................................................................................................................................................GTCGTTTGTGGAACGGCGGAG.........................................	21	3	1.33	4	0	2	0	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAAA................................................	20	3	1.33	4	0	1	0	0	0	0	0	2	1	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAGATAA.....................................	23	3	1.33	4	0	0	0	0	0	0	0	4	0	0
................................................................................................................................................................................................................................................................................................TCGTTTGTGGAACGGCGGAGAC.......................................	22	3	1.33	4	0	0	0	0	0	0	0	4	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACGGA.............................................	23	3	1.33	4	0	1	0	0	0	0	0	3	0	0
...................................................................................................................................................................................................................................................................................................TTTGTGGAACGGCGGAGAT.......................................	19	3	1.33	4	0	2	0	0	0	0	0	2	0	0
..........................TCTCCGCCGATCCACAAACG...............................................................................................................................................................................................................................................................................................................	20	3	1.33	4	0	4	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GATATGTCGTTTGTGGAACGGC.............................................	22	3	1.33	4	0	1	0	0	0	0	0	2	0	1
.............................CCGCCGATCCACAAACGACATATCTC......................................................................................................................................................................................................................................................................................................	26	3	1.33	4	0	4	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TCGTTTGTGGAACGGCGG...........................................	18	3	1.33	4	0	3	0	0	0	0	0	0	1	0
.........................ATCTCCGCCGATCCACAAACGACA............................................................................................................................................................................................................................................................................................................	24	3	1.33	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGG...................................................	17	6	1.33	8	0	0	0	0	0	0	0	8	0	0
...........................................................................................................................................................................................................................................................................................ATATGTCGTTTGTGGAAC................................................	18	3	1.33	4	0	3	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACGT..............................................	23	3	1.33	4	0	0	0	0	0	0	0	4	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACGCTC............................................	25	3	1.33	4	0	0	0	0	0	0	0	4	0	0
..........................TCTCCGCCGATCCACAAACGACATATC........................................................................................................................................................................................................................................................................................................	27	3	1.33	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAG.................................................	19	6	1.17	7	0	0	0	0	0	0	0	7	0	0
....................................TCCACAAACGACATATCTCC.....................................................................................................................................................................................................................................................................................................	20	6	1.17	7	0	7	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTCG..........................................................	23	8	1.13	9	0	7	0	0	0	0	0	0	2	0
....................................................................................................................................................................................................................................................................................CGCGGAGATATGTCGTTTGTG....................................................	21	13	1.08	14	0	4	0	0	0	0	1	9	0	0
................................................................................................................................................................................................................................................................................................TCGTTTGTGGAACGGCGGAGT........................................	21	3	1.00	3	0	1	0	0	0	0	0	1	1	0
....................................TCCACAAACGACATATCTCCG-----------T--......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAACGGCG............................................	26	3	1.00	3	0	0	0	0	0	0	0	0	3	0
............................TCCGCCGATCCACAAACGACATATCT.......................................................................................................................................................................................................................................................................................................	26	3	1.00	3	0	1	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACGGTA............................................	24	3	1.00	3	0	0	0	0	0	0	0	3	0	0
..................................................................................................................................................................................................................................................................................................GTTTGTGGAACGGCGGAGAA.......................................	20	3	1.00	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TTTGTGGAACGGCGGAGA........................................	18	3	1.00	3	0	3	0	0	0	0	0	0	0	0
..........................TCTCCGCCGATCCACAAAC................................................................................................................................................................................................................................................................................................................	19	3	1.00	3	0	2	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................TTTGTGGAACGGCGGAGATAT.....................................	21	3	1.00	3	0	2	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACTC..............................................	23	3	1.00	3	0	0	0	0	0	0	0	3	0	0
...........................................................................................................................................................................................................................................................................................ATATGTCGTTTGTGGAACGTT.............................................	21	3	1.00	3	0	0	0	0	0	0	0	1	2	0
..........................................................................................................................................................................................................................................................................................GATATGTCGTTTGTGGAACGT..............................................	21	3	1.00	3	0	0	0	0	0	0	0	1	2	0
..............................................................................................................................................................................................................................................................................................TGTCGTTTGTGGAACGGCGGA..........................................	21	3	1.00	3	0	1	0	0	0	0	0	2	0	0
................................................................................................................................................................................................................................................................................TCCGCGCGGAGATATGTCGTT........................................................	21	14	1.00	14	0	12	0	0	0	0	1	1	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACTC..............................................	22	3	1.00	3	0	0	0	0	0	0	0	3	0	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAGG........................................	20	3	1.00	3	0	0	0	0	0	0	0	3	0	0
....................................................................................................................................................................................................................................................................................CGCGGAGATATGTCGTTTGTGGAACGGC.............................................	28	3	1.00	3	0	0	0	0	0	0	0	1	2	0
................................................................................................................................................................................................................................................................................................TCGTTTGTGGAACGGCGGT..........................................	19	3	1.00	3	0	0	0	0	0	0	0	3	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACTA..............................................	23	3	1.00	3	0	0	0	0	0	0	0	3	0	0
......................................................................................................................................................................................................................................................................................CGGAGATATGTCGTTTGTGGAA.................................................	22	3	1.00	3	0	0	0	0	0	0	0	3	0	0
....................................................................................................................................................................................................................................................................................................TTGTGGAACGGCGGAGATATGTAA.................................	24	3	1.00	3	0	0	0	0	0	0	0	3	0	0
.......................................................................................................................................................................................................GA-----------------------------CATACCTCCGCGCGGAGATA...................................................................................................	22	4	1.00	4	0	1	1	0	1	0	1	0	0	0
................................................................................................................................................................................................................................................................CTCAAAACGTCATAGCTCCGCGCGG....................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAACG...............................................	23	3	1.00	3	0	0	0	0	0	0	0	0	3	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAAG................................................	22	3	1.00	3	0	0	0	0	0	0	0	3	0	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAACA...............................................	23	3	1.00	3	0	0	0	0	0	0	0	2	1	0
.....................................................................................................................T----------------------------------------------------------------------------AAAGCGA-----------------------------CATACCTCCGCGCGG........................................................................................................	23	4	0.75	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................T----------------------------------------------------------------------------AAAGCGA-----------------------------CATACCTCCGCGCGGAGAT....................................................................................................	27	4	0.75	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................T----------------------------------------------------------------------------AAAGCGA-----------------------------CATACCTCCGCGCGGAGATA...................................................................................................	28	4	0.75	3	0	2	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACGGAAA...........................................	25	3	0.67	2	0	0	0	0	0	0	0	2	0	0
........................TATCTCCGCCGATCCACAAACGACAA...........................................................................................................................................................................................................................................................................................................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0
...........................CTCCGCCGATCCACAAACGA..............................................................................................................................................................................................................................................................................................................	20	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.................................CGATCCACAAACGACATATCT.......................................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGTCGTTTGTGGAACGGCGGA..........................................	23	3	0.67	2	0	0	0	0	0	0	0	2	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAACGA..............................................	23	3	0.67	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................ATATGTCGTTTGTGGAACGGT.............................................	21	3	0.67	2	0	0	0	0	0	0	0	2	0	0
...................................ATCCACAAACGACATATCTCCG-----------.........................................................................................................................................................................................................................................................................................	22	3	0.67	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TTGTGGAACGGCGGAGATA......................................	19	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TGTGGAACGGCGGAGATATGT...................................	21	3	0.67	2	0	0	0	0	0	0	0	2	0	0
............................................................................................................................................................................................................................................................................................TATGTCGTTTGTGGAACGGCG............................................	21	3	0.67	2	0	1	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAACGGC.............................................	25	3	0.67	2	0	0	0	0	0	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................CGTTTGTGGAACGGCGGAGC........................................	20	3	0.67	2	0	0	0	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACGGC.............................................	23	3	0.67	2	0	1	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACCA..............................................	22	3	0.67	2	0	0	0	0	0	0	0	2	0	0
.........................ATCTCCGCCGATCCACAAACG...............................................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTGGAACGGCGGAGATATGTC..................................	21	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GTTTGTGGAACGGCGGAGGA.......................................	20	3	0.67	2	0	0	0	0	0	0	0	2	0	0
............................TCCGCCGATCCACAAACGACA............................................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GAGATATGTCGTTTGTGGAG.................................................	20	6	0.67	4	0	0	0	0	0	0	0	1	3	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAGT................................................	22	6	0.67	4	0	0	0	0	0	0	0	3	1	0
................................................................................................................................................................................................................................................................................................TCGTTTGTGGAACGGCGGAGG........................................	21	3	0.67	2	0	0	0	0	0	0	0	2	0	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAACGGCGG...........................................	27	3	0.67	2	0	0	0	0	0	0	0	2	0	0
..........................TCTCCGCCGATCCACAAACGACAT...........................................................................................................................................................................................................................................................................................................	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GTTTGTGGAACGGCGGAA.........................................	18	3	0.67	2	0	2	0	0	0	0	0	0	0	0
...........................CTCCGCCGATCCACAAAC................................................................................................................................................................................................................................................................................................................	18	3	0.67	2	0	0	0	0	0	0	0	2	0	0
........................TATCTCCGCCGATCCACAAACGACT............................................................................................................................................................................................................................................................................................................	25	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTGGAATT...............................................	23	3	0.67	2	0	0	0	0	0	0	0	0	2	0
........................TATCTCCGCCGATCCACAAAC................................................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AGATATGTCGTTTGTGGAACGA..............................................	22	3	0.67	2	0	0	0	0	0	0	0	2	0	0
............................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTCGTTTG......................................................	27	8	0.63	5	0	5	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GCGGAGATATGTCGTTTGTG....................................................	20	13	0.54	7	0	4	0	0	0	0	0	2	1	0
......................................................................................................................................................................................................................................................................................................GTGGAACGGCGGAGATATGTCGTT...............................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................T----------------------------------------------------------------------------AAAGCGA-----------------------------CATACCTCCGCGCGGAGAA....................................................................................................	27	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.......................ATATCTCCGCCGATCCACAA..................................................................................................................................................................................................................................................................................................................	20	4	0.50	2	0	0	0	0	0	0	0	2	0	0
...............................................................................................................................................................................................................................................................................CTCCGCGCGGAGATATGTCGT.........................................................	21	16	0.50	8	0	7	0	0	0	0	0	1	0	0
........................TATCTCCGCCGATCCACAAA.................................................................................................................................................................................................................................................................................................................	20	4	0.50	2	0	1	0	0	0	0	0	1	0	0
.....................................................................................................................T----------------------------------------------------------------------------AAAGCGA-----------------------------CATACCTCCGCGCGGAG......................................................................................................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TGTGGAACGGCGGAGATATGTCGTT...............................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................GA-----------------------------CATACCTCCGCGCGGAGA.....................................................................................................	20	4	0.50	2	0	1	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................TCCGCGCGGAGATATGTCGTTTGTG....................................................	25	9	0.44	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GGAGATATGTCGTTTGTG....................................................	18	14	0.43	6	0	0	0	0	0	0	0	3	3	0
....................................................................................................................................................................................................................................................................................CGCGGAGATATGTCGTTTGTGGA..................................................	23	5	0.40	2	0	1	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTCGTTT.......................................................	26	8	0.38	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TTTGTGGAACGGCGGAGATT......................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................ATCCACAAACGACATATCTCT.....................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0

droPer2

AC------------------GACATATCTCC-------------------------G-----------C--G-------C----------------GG-----AGATATGACGTT-TTGAAACG----------------------------------------ACATATCTCCGCCGT-----------TCCACAAACGA-----------------------------CATATCTCCGCGCGGAGTTATGACGTTTTGAGACGACATATCTCCGCGCGGAGGTATGTCG-------------------------CTTTAAAA-CGA-CATA----ATTTCGCGCGGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................CAAACGA-----------------------------CATATCTCCGCGCG.........................................................................................................	21	11	0.09	1	0	0	1	0	0	0

droAna3

AT------------------ATTTTTATTT-------------------------------------------CAAACAAAAAAACATTTTTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

AT------------------ATCATATTTCC-------------------------A-----------T--CTTAAAAAAAAAATTGTGTCGCTTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AC------------------GACATATCTCCGCCAAACTAGAAACGACATATCTCCG-----------C--G-------C----------------GG-----AGTTATGTCGCT-CTAAAGCG----------------------------------------ACATATCTCCGCCGA-----------ACTAGAAACGA-----------------------------CATATCTCCGCGCGGAGCTATGTCGTTTTAAAGTGACATAACTCCGCGCGGAGGTATGTCG-------------------------TTGCTTA--CGACAACA----GCTCC--CCAGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AC------------------GACATAAGTCC-------------------------GGCACAAA----------------------------------------------TAGTT-TTAAAACG----------------------------------------ACATAATTTCGCGCGAACTTATGTCGCTTAGCAG--TTTATTCTGCGGCTACCGAAATTATGTCGTTTTTTCTAC-GGCGGACTTATGGCGTTCTCAAACGTCATTAGATCGAGCGAAATTATGTCG-------------------------TTTTAAAA-CGG-CTGAATTATGTCG--GTGGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GC------------------GACACAGCTCC-------------------------CCCATTGACTAAC--G-------C----------------GG-----AGTTATGTCGTC-TAAAAACG----------------------------------------ACATATCTCCGCGGGGAGATATGACGTTTAAAAACGA-----------------------------CATATCTCCGCTCGAAAATATTTCGTTTTA-AACGACATATCTCCGCGCGGAGATATGTCGTTTG------------------------TAGAA-GG-----------------GCGGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAC-----------------GTCATATCTCC-------------------------G-----------T--G-------C----------------GG-----AGTTATGTCGCTTTTAAAACG----------------------------------------ACATATCTCCGCTGA-----------ACAAAAAGCGA-----------------------------AATATTTCCGCGCGGAGATATGACATTTCAAGACGACATATCTCCGCGCGGAGTTATGTCG-------------------------CTATGAAA-AAA-TACA----TCTCC--GCCGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AC------------------GACATATCTCC-------------------------CCCGTTAATCAAC--G-------C----------------GG-----AGATATGACGTT-TAAAAACG----------------------------------------ACATATCTTCGCCATGTGATGTGACGTTTAAAAACGA-----------------------------AATATTTTCGCGCGGAGATATGTCGCTTTTAAACGTCATATCTCAGCGCGGAGATATGTCGTTCGCAG--------------------ATGGGC-GGA-GATA----TGTC-GCGCGGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TT-----------------------------------------------------------------------TAAAACAAAAAAAATAATGATTTTG-----AAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-------------------------------------------------------------G	Size	Hit Count	Total Norm	Total
No Reads

droSim2

AT------------------ACCGTTCTTT-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTCGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................T-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCGGG..........................................................................................................................................................................................................................................................	27	2	11.00	22	0	0	0	0	0	0	17	2	2	1	0	0	0	0	0	0	0
............................TT-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCGGG..........................................................................................................................................................................................................................................................	28	2	7.00	14	0	0	0	0	0	0	12	1	1	0	0	0	0	0	0	0	0
...........................TTT-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCGGG..........................................................................................................................................................................................................................................................	29	2	2.50	5	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0
.........................................................................CAAAAAAAAAAACGTGCCTGTTCGGGC.........................................................................................................................................................................................................................................................	27	2	2.00	4	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0
.............................T-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCGG...........................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.............................T-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCGGGC.........................................................................................................................................................................................................................................................	28	2	1.00	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
.........................TCTTT-------------------------------------------CAAAAAAAAAAACGTGCCTGT...............................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................TTCTTT-------------------------------------------CAAAAAAAAAAACGTGCCTGTT..............................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CAAAAAAAAAAACGTGCCTGTTCGGG..........................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................TT-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCGGGC.........................................................................................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................TT-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCG............................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................TCTTT-------------------------------------------CAAAAAAAAAAACGTGCCTGTT..............................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................TT-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCGG...........................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................AAAAAAAAAACGTGCCTGTTCGGGC.........................................................................................................................................................................................................................................................	25	5	0.40	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...........................................................................AAAAAAAAAACGTGCCTGTTCGGG..........................................................................................................................................................................................................................................................	24	5	0.40	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.T------------------ACCGTTCTTT-------------------------------------------CAAAAAAAAAAA........................................................................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................AAAAAAAAAACGTGCCTGTTCGG...........................................................................................................................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................TGCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTC..	25	11	0.18	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............................................................................AAAAAAAAACGTGCCTGTTCGGGC.........................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................AAAAAAAAACGTGCCTGTTCGGGT.........................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.T------------------ACCGTTCTTT-------------------------------------------CAAAAAAAAAAAG.......................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.T------------------ACCGTTCTTT-------------------------------------------CAAAAAAAA...........................................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................AAAAACGTGCCTGTTCGGG..........................................................................................................................................................................................................................................................	19	8	0.13	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................AAAACGTGCCTGTTCGG...........................................................................................................................................................................................................................................................	17	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................AACGTGCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA...............................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................AACGTGCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GT...	28	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................TGCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTCG.	26	11	0.09	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................GTGCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------A....	24	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................TGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTC..	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................CGTGCCTGTTCGGGC.........................................................................................................................................................................................................................................................	15	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................CGTGCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTCG.	28	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................GCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTCG.	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................TGCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTCGT	27	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................CGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTC..	17	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................TCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTC..	18	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AT------------------ACCGTTCTTT-------------------------------------------CAAAAAAAAAAACGTGCCTGTTCGGGCACCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA---------------------------------------------------------GTCGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

GATGATGTATCTCCAAAAACGACACATCTCC-------------------------GCCGATAATAAGCTGG-------A----------------TG-----AGTTGTGTCGTTTTCAAAACGACATATCTCCTCCCGAAGTTTTTTGAGTTCGGAGGAGATA---------TGTCGT-----------TTTCAAAGCGA-----------------------------CATATCTCATC-CGAAA----------TTAAAACGACATACCTCCTAGCGGAGATATGTCG-------------------------TTTTGAAAACGA-TTTA---ATTTC-G-GATGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................TCTCCTCCCGAAGTTTTTTGAGTTCGGA................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTCAAAACGACATATCTCCTCCC...................................................................................................................................................................................................................	24	3	1.00	3	0	0	0	0	0	0	0	0	0	0	3
.....TGTATCTCCAAAAACGACACATCTCC-------------------------.....................................................................................................................................................................................................................................................................................................	26	4	0.75	3	0	3	0	0	0	0	0	0	0	0	0
............................TCC-------------------------GCCGATAATAAGCTGG-------A----------------TG-----AGTTG.................................................................................................................................................................................................................................................	27	3	0.67	2	0	1	0	0	0	0	1	0	0	0	0
............................TCC-------------------------GCCGATAATAAGCTGG-------A----------------TG-----AGT...................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................GATAATAAGCTGG-------A----------------TG-----AGTTGTGTCG............................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
........................................................GCCGATAATAAGCTGG-------A----------------T............................................................................................................................................................................................................................................................	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TC-CGAAA----------TTAAAACGACATACCTCC..........................................................................	25	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
....................GACACATCTCC-------------------------GCCGATAATAAGCTGG-------A----------------.............................................................................................................................................................................................................................................................	28	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
........................................................GCCGATAATAAGCTGG-------A----------------TG-----AGTTGT................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................AATAAGCTGG-------A----------------TG-----AGTTGTGTCGT...........................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................CCGATAATAAGCTGG-------A----------------TG-----AGTT..................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................TCATC-CGAAA----------TTAAAACGACATACCTCC..........................................................................	28	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TATCTCATC-CGAAA----------TTAAAACGACATAC..............................................................................	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................ATAAGCTGG-------A----------------TG-----AGTTGTGTCGTT..........................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................GATAATAAGCTGG-------A----------------TG-----AGTTGTGTC.............................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
........................................................GCCGATAATAAGCTGG-------A----------------TG-----AGTT..................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................TCAAAACGACATATCTCCTCC....................................................................................................................................................................................................................	21	16	0.31	5	0	0	0	0	0	0	0	0	0	0	5
GATGATGTATCTCCAAAAACGACACA...................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..TGATGTATCTCCAAAAACGACACATC.................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................TCAAAACGACATATCTCCTC.....................................................................................................................................................................................................................	20	16	0.25	4	0	0	0	0	0	0	0	0	0	0	4
.......TATCTCCAAAAACGACACATCTCC-------------------------.....................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....ATGTATCTCCAAAAACGACACA...................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTCAAAACGACATATCTCCT......................................................................................................................................................................................................................	21	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................................TTCAAAACGACATATCTCCTA.....................................................................................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1

droEre2

----------------------CATATCTCC-------------------------GTCCTTTTCTTATTGG-------T----------------GG-----AGTTATGTCGCTTTAAAAACG----------------------------------------ATATATTTCCGTCAA-----------ACTAAAAACGA-----------------------------CATATCTCCGCGCGGAACTTTGTTGTTTTACAACGACATTATTCCGCGCAGAGATATGACG-------------------------TTTCAT-A-GGA-CATA----ACTCCGTGAGGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_410

scaffold_12928:2234382-2234465 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-50.0	-49.8

TTCAGTATAGAGATAAAGTTTTTTTTTTTGCACTACTAAACCTCAATACAGCAAAACCTTGCAGTATAGAGGGCGCCTCAATACAGCAAAACCTTGCAGTATAAAGGCGCGCCTCAATACCGCAAAACCTTGCAGTTTAGAGGCGCGCCTCAATACAGCAAAACCTTCTAGTATAGAGGCGCCT ********************************************((.(((((((((((((((((.(((((((((((.((((.((((....)))).)))).))))))).)))).))))))))))))))))).))..*********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060676 9xArg_ovaries_total	SRR060674 9x140_ovaries_total	M047 female body	SRR060687 9_0-2h_embryos_total	SRR060669 160x9_females_carcasses_total	SRR060672 9x160_females_carcasses_total	SRR060682 9x140_0-2h_embryos_total	SRR060683 160_testes_total	SRR060667 160_females_carcasses_total	SRR060668 160x9_males_carcasses_total	SRR060670 9_testes_total	SRR060671 9x160_males_carcasses_total	SRR060675 140x9_ovaries_total	SRR060677 Argx9_ovaries_total	SRR060678 9x140_testes_total	SRR060679 140x9_testes_total	SRR060681 Argx9_testes_total	SRR060685 9xArg_0-2h_embryos_total	V116 male body
........................................................................................................................................TTAGAGGCGCGCCTCAATACAG..........................	22	0	20	0.20	4	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0
..........................................................................................................GCGCGCCTCAATACCGCAAAACCT......................................................	24	0	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TTAGAGGCGCGCCTCAATACAGC.........................	23	0	20	0.15	3	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................TAGAGGCGCGCCTCAATACAG..........................	21	0	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AGAGGCGCGCCTCAATACAG..........................	20	0	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TTGCAGTATAGAGGGCGC............................................................................................................	18	0	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
................................................CAGCAAAACCTTGCAGTATAGAGG................................................................................................................	24	0	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AAACCTTGCAGTTTAGAGG.........................................	19	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GCGCGCCTCAATACAGCAAAACC...................	23	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TTGCAGTATAGAGGGCGCCT..........................................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................ATAGAGGGCGCCTCAATACAGC.................................................................................................	22	0	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TTAGAGGCGCGCCTCAATACGGCA........................	24	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................CCTTGCAGTATAGAGGGCGCCTCA........................................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...........................................................CGCAGTATAGAGGGCGCCTCAAT......................................................................................................	23	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................GGGCGCCTCAATACAGCAAAACCT..........................................................................................	24	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TTAGAGGCGCGCCTCAATACA...........................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................AGAGGGCGCCTCAATACAGC.................................................................................................	20	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................AGAGGGCGCCTCAATACAGCAA...............................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.....................................................................AGGGCGCCTCAATACAGCAAAA.............................................................................................	22	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GGCGCGCCTCAATACCTCAA...........................................................	20	1	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TAGCAGTATAGAGGGCGCCTCAA.......................................................................................................	23	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTATAGAGGGCGCCTCAATA.....................................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0