ID:

dvi_4073

 Coordinate:

scaffold_12855:5681321-5681449 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.0 -1.3 -1.04

Flybase annnotation

CDS [Dvir\GJ10273-cds]; exon [dvir_GLEANR_10208:2]; exon [dvir_GLEANR_10208:3]; CDS [Dvir\GJ10273-cds]; intron [Dvir\GJ10273-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------##################################################
CAACAACAACAACAACAACACCAACAACCACAACGACAACCCCAACAAATGTGTTCACAACGACAACAACGTCAACGACGATCTCAAACCCAACAACAACAACAACTGTCGCCGTCGCCTCTTATGATAAACCACAACCAATTGACTGATTCTCATATTAACCACGCACCTATCAATAGCCATAGCCAAGGACCTTCCGGCCCACAGGCAGGACCAACGGGCCATGGGC
****************************************************************************((((................................))))...................................****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 V116
male body		 SRR060666
160_males_carcasses_total
 M028
head
 SRR060664
9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
...............................................AATGTGTTCACAACGACAACA................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGGCCATAGCCAAGGACCTTCCGGCC........................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGGACCAACGGGCCATGGGC 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................AACCACAACCAATTGACTGATT.............................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................GACGATCTCAAACCCAACAACAACA................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................ACTGGCGCCGTCGCCTCCTA......................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..................................GACAACCCCAACGAATGTCT............................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................AACAACAACAACAACTGTCGCCGTC................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................ACAAATGTGTTCACAACGACAAC.................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AACCACGCACCTATCAATAGCCATAGC........................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CCACAGGCAGGACCAACGG......... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................GCCATAGCCAAGGACCTTCCGGCCC.......................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................CAACAACAACAACTGTCGCCGTC................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................GACAACCCCACCAAATGTC................................................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................CGACGATCTCAAATCCAAA....................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....ACAACAACAACAACACCAACAACCA....................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................AACGTCAACAACGTCAACGT....................................................................................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0
CAACAACAACAACAACAACACCA.............................................................................................................................................................................................................. 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CAAGGAAATTCGGGCCCAC........................ 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0
...........................................AACAAAGGGGTTAACAACGA...................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0
CAACAACAACAACAACAACACCAACAAC......................................................................................................................................................................................................... 28 0 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
CAACAACAACAACAACAACAC................................................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...CAACAACAACAACAACACCAA............................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
....AACAACAACAACAACACCAAC............................................................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTGTTGTTGTTGTTGTTGTGGTTGTTGGTGTTGCTGTTGGGGTTGTTTACACAAGTGTTGCTGTTGTTGCAGTTGCTGCTAGAGTTTGGGTTGTTGTTGTTGTTGACAGCGGCAGCGGAGAATACTATTTGGTGTTGGTTAACTGACTAAGAGTATAATTGGTGCGTGGATAGTTATCGGTATCGGTTCCTGGAAGGCCGGGTGTCCGTCCTGGTTGCCCGGTACCCG
******************************************************************************((((................................))))...................................**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060663
160_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060658
140_ovaries_total
 M028
head
 SRR060675
140x9_ovaries_total
 SRR060655
9x160_testes_total
 V116
male body		 SRR060654
160x9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
..................................CTGTTAGGGTGGTTCACACAAG............................................................................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................TGCTGTTGGGTTTGTTTAGCCA............................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................GTTGGGGTGCTTCACACAAGT............................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ACTACTATTTGGTGCTGTTTA....................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................GTTTGGGTTGTTGTTGTT............................................................................................................................... 18 0 11 0.18 2 0 0 0 2 0 0 0 0 0 0 0 0
.....................................TTGGGGTGGTTGACGCAAGT............................................................................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................CTGGGGTGGTTGACACAAGT............................................................................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AAGTTTGGGTTGTTGTTGT................................................................................................................................ 19 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................TGGGGTAGTCGACACAAGT............................................................................................................................................................................ 19 3 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GTTGTTGTTGTTGTTGAC......................................................................................................................... 18 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
....................................................................................GTTTGGGTTGTTGTTGTTG.............................................................................................................................. 19 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................TTGGAGTTGCTGTTGGGC.......................................................................................................................................................................................... 18 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................TGGGGTGGTTGAGACAAGT............................................................................................................................................................................ 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................GTTCGAGTTGTTTACACACGT............................................................................................................................................................................ 21 3 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................TTGGGTTGTTGTTGTTGT............................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................CTGCGAGAGTTTGTGGTGT...................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..................GTGGTCTTTGGTGTTGCT................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................ACTGGAGTTAGGGTTGTTGTT.................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................TGGGTTGTTGTTGTTGTT............................................................................................................................ 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................TTGGGTTGTTGTTGTTGTT............................................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
........................GTTGGTGCTGCTGATGGGC.......................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:5681271-5681499 - dvi_4073 CAACAACAACAACAACAACACCAACA---------ACCACAACG------ACAACCCCAACAAAT--------GTGTTCACAA------------CGACAACAACGTCAACGACGATCT----------CAA----------------------------------------------------------------------------------ACCCAACA------------ACAACAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GTCGCC----GTCGCCTCTTATGATAAACCACAACCAATTGA--------CTGATTCTCATATTAA------------CCACGCACCTATCA--------------------------A-----------TAG----------------CCATAGCCAAGGACC--TTCCGG-------C-C---CACAGGCAGGAC---CAA---------------------CGG---GCCATGGGC
droMoj3 scaffold_6540:6004935-6005136 - dmo_1839 CAACATCCACAACCACAACAACTGTG---------TTCACAACG------CCAACAACGACGATC--------TCAAACCCAA------------CAACTACA---ACAACAACAAC-----------------------------------------------------------CACAA---------------------------------CAAATGCA------------------ACTGCAACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------TT-GTCGCC----GCCGCTTCTTATGATAAACCTCAACCAATTGA--------CTGATACTCATTATAA------------CCATGCATCCATCA--------------------------A-----------TAG----------------TCATAGCCAAGGATC--TGCAGG------------------------------------------------------A--------CCAC
droGri2 scaffold_14906:8323206-8323408 + A--CAACCACAACAAATGTGTTCACA---------ACGACAACA------ACCACAACA-----------------------------------------------ACATCGACGATCT----------CAA-------------------------------------------ACCCAA---------------------------------CAACTACA------------ACAACAA------CAA-------------------------------------------------------------------------------------------------------------------------------------------------------------TT-GTCGCC----GTCGCTTCTTATGATAAATTTCAACCAATTGA--------CTGATACTCATATTAACCACGCATCCAATAATGCACCCATCA--------------------------A-----------TAG----------------CCACAGCCAAGGACC--CACTGG------------------------------ACCACAGGTG-----------------------GGAC
droWil2 scf2_1100000004515:3266662-3266861 - CAACAACAACAACTTGCAAACCAACA---------ACAACGACA------ACAACAACAACTTG--------------CAAAA------CAACGACAACA------ACAACTACAAC-----------------------------------------------------------CACGACAACAAC---AACAACAA---CTACAACCACGACGACGACG------------ACAACAACAACA-------------------------------------ACTTGCAAGCCAACAACA------------------------------ACGACAACAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTTGC--------AAACCAACAACA----------ACGACAA---CAA---------------------CAAC----AACTTGC
dp5 4_group1:5090855-5091066 - CTACAACAACAACCACTACAACAACA---------ACCACGACT------ACAACAACCACGAC--------------AACAA------CAACCACGACAACGACAACAACCACGACG-ACAACCACCACTA----------------------------------------------------------------------CTAC---CACAACACCAACA---------------ACGACAACTACAACC-------------------------------ACTTGCTCGACAACAACA------------------------------ACCACGACGACAA----------------------------------------------------------------------------------------------------CCAC-------------T----------ACAA------------CAA-----------------------------------------------------------------------CAACCACT--------ACAACAACAACC-A---CG---ACTACAA---------------------------CAAC----CACGACA
droPer2 scaffold_82:107641-107867 - CAACAACAACAACAACAACAACAGCA---------GCAACAACA------ACAGCAGCAACAACA--------GCAGCAACAA------------CAACAGCAGCAACAACAACAGCA----------GCAA----------------------------------------------------------------------------------CAACAACA------------ACAACAACAGCAGCAGCCGCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AA-------GTTCGTACCTATG-----------------------GAA------------CGATGAAGGTGCCCTCGTCGCCGGTGG--CAAGCAATGCC------CCA---CTG----------------CTAGAGCGGAA--------GAACAGTCAACAAGGAGGA---GCCACAG---GAG---------------------CAG--------CAGC
droAna3 scaffold_13248:1387604-1387837 - CAACAACAAAAACAAAAAAAACAACA---------ACAACAACA------ACAACAACAACAACA-----------ACAACGA---------------------------CAACAAC-----------------------------------------------------------CGCAA---------------------------------CGGCAA---------------------------CGA----------------------------------------TCTCAACGGCGCCGCAACGATCTCAA----------------------------GGCGGTGGTG------------------GCGGCGGGATCCTCCGGGAGCGATTACGTCGACGACCAATTCCTGTCCGCCGATT-----------------------------------ATT---GTTATTGA-------------GGTGACGATAGCGATAGCACT-----------------------GTTG---TTG----------------TTGCTGTCGTT---------------------------------GTAT---------------------------CGGC----AATTGTC
droBip1 scf7180000396730:117970-118181 + CAACGACAACCACAACAACACCAACT---------TGCGCCCCT------ACAACTACAACAACC--------ACCACGACTA---CAACGACCACC---------ACAACAACAAC-----------------------------------------------------------CACCACCACAACAACAACAACCACCACCAC---CACTACAACGACA------------ACCACAACAACA-------------------------------------ACTTGCGCCCCTACAACT------------------------------ACAACAACCACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACT--------ACAACAACAACC-A---CCAC---TACAACAACAA---------------------CCAC----CACTACA
droKik1 scf7180000302698:192939-193176 - CAACAACAACAACTTCAACAGCAGCA---------GCTCTCACA------CCAACAACAATACAA--------ATCGAATCAA------------CAACGACG---AAGACA--------------------------------------------------------------------A---------------------------------CAACAA---------------------------CAA----------------------------------------TCCCAACAAAACAACGATA---T------------------------------------TAACATCAACAACACACCCTGTCACAACAAGAGCTCC----AACTACAACAACAGCAACTAGTGGCTGCCCAACAGCT--------------------------------------------------------------------------------GCT-----------------------TTAA---TAA----------------CTGCATTCAACAGCA--TTGCAGCCATATTG-G---TA---TTAGCAA---------------------------CTGA----AAATGGA
droFic1 scf7180000453829:863016-863218 + CTTCAGCAACAACAACAACATCTATAACATCATCAACAACAACA------ACAACAACAGTATTT--------A---------------------CAACAGCAATAGCAG--------------------------------------------------------------------ACAACTAATAACCAACAGTAGCTGCAAT---TGCAACATCAACA---ACAACGACGAAAACAA------CAA----------------------------------------TCCCAACAGTG------------------------------ACAACTAT-------------------------------------------------------------------------------------------------------------------------------------TTAA------------CAACGATAA----------------------------------------------------------------------------------TATCAACAGCG-G---CAAGAACTGCGA---TAACCACAG---------------------------GCA
droEle1 scf7180000490564:2013882-2014107 - CAACAACCACAACACTAGCAACAACC---------ACCG--GCA------ATAGCACCACCA-----------CCAACAACAA------------TAACAGCAGCAACAACAACGGC-----------------------------------------------------------CACAA---------------------------------CAGTAGCA------------ACAACAACATT-GTAACC-------------------------------GTA-----------------------------------------------------------------------------CA---CGCCG---------------------------------------------------T---------------------------------------------------------ACTGAACAACCCACCCACCAACATTGCAGGTGGTGCAGCCGACGCC-----GCCACCGTTG----------------CGATTGCCAAGGACATGTTGCAGCTGCATCA-T--GGC---GCAGCAG---CGG---------------------CAG--------CAGC
droRho1 scf7180000779365:13511-13741 + CAACCACTTGTGC------CCCAACA---------ACAACGACA------ACCACCACAACCAC-CACCACCAC-GACTACGACCACAA------CCACCACGACCACAACCACAACC--------------------------------------------------------------------------------ACGACCAC---------AACCACAACT---------ACAACGACAACGACAACC-------------------------------ACTTGTGCCCCAATAACC------------------------------ACGACAACCACAA----------------------------------------------------------------------------------------------------CCACCTGAGGCTCCAACTACA----------A------------CTA---CAACTACAACC-----------------------AC------------------------------AACCACTTGT--------G------CCCCA-A---CAACAACGACAA---C-------------------------------AACCACA
droBia1 scf7180000301506:766563-766805 + CAACAACTACTACGACAACAACTACC---------ACTACAACG------ACCACCACGACCACC--------ACAACCACAA------------CTACTACAACCACAACTACGACC----------ACGA----------------------------------------------------------------------------------CAACAACA------------ACGACAACAACACCAG-------------------------------------------------------AACAGCCCCCCTGTGAGCCAACCACCACTACAAC-----------------------------------------------------------------------------------------ACCAGATGAGCCC---------------CCAAAAGAG----------A------------TAA---CAACCACAACA-----------------------ACACCAAAG---CCAGAAGAGCCCTGCGAGCCCACGACCA---------------------------------CTACAA---CAC---------------------CAACTCCAGACCAGC
droTak1 scf7180000415345:312710-312930 + CAACCACCACAACAACAACAACAACT---------ACATCAACA------ACAACAACAAAATGT--------ACTACTACAA------------CA---------ACAACTACAATTAAGTAGCGCCATAA----------------------------------------------------------------------------------CAACAACA------------ACTACAACAGCAACAGCCAGTAATAATATGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---AATATTAA------------TAATAAAAGTATCATAAACGCT-----------------------GTAA---TTG----------------CTACTACCAATAATA--TAATACCATCATCA-G---CAATAGCAGCAA---CAA---------------------CAA--------CAGC
droEug1 scf7180000409692:151311-151528 + CCACAACCACAACCACAACCACAACC---------ACAACCACAACCACAACCACAACGACATGT--------GCTCCAACAA------CAACGACGACT------ACGACGACA----------------A------------------------CCACAACAAC----------CACCACCACTACAACTACAACTACCACCAC------GACCACTACT---ACA------ACGACAACTACA-------------------------------------ACATGCGCTCCAACAACA------------------------------ACTACCACCACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACT--------ACCACAA---CC-A---CC---ACCACCA---------------------------CCAC----CACGACT
dm3 chr3R:13956629-13956844 + CAACAACAACAGCAACAACAACAACA---------ACAGCAGCA------ACACCAACAACAGCC--------GCTACACCAA------------CAACAACA-----------------------------------------------------------------------------------------------------------------------------------ACTGCAACACCAGCAA-CAGCAACAACACCACCAACAACACTATCAACAACATGCCATTCAACACCA------------------------------GCAATCACAACAG----------------------------------------------------------------------------------------------------CAGGCTAG--------CAAAATCTCATA----------------------------------------------------------------------------------------------TCGTGGCA--TTTTCACCA----------------------------CCACAGGCAACGCGATGAACGCAGC----AGCTGCC
droSim2 2r:13901614-13901837 + CAACAACAACAACAACAACCACCACC---------ACAACAACAACAACATCAACAACAAAATGT--------ACTACTAC------------------AACAACAACAACTACAATTAAGTAGCGTCATAA----------------------------------------------------------------------------------CAACAACA------------AGTACAACAGCAACAGCCAGTAACAATATGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAATAATATTAA------------TAATAAAGGTATCATAAACGCT-----------------------GTTA---TGG----------------CTTCTACCAAT--------ATAACATCATCA-G---CA---ACAACAA---C------------------------AGC-----ATCATC
droSec2 scaffold_12:200835-201016 - CAACAACAACAACAACACC-ACAACA---------TCATCATCA------ACAACCACAACAAGC--------AAACAGACAA------------CAA--GCG---AAAGCA----------------ACAACAGCAACACCGAGTGCGTTGGCTCACCAGGCAACCATACACAATCACAC---------------------------------CAACAGCA------------ACAACAACAGCTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------ACAACAACACGA----------GCAGCAA---CAA---------------------CAGC----AACTGCC
droYak3 2R:18221469-18221683 - CAACAACCACCACAACAACAACATCA---------ACAACAACA------ACAACAACAAAATGT--------ACTACTACAA------------CA---------ACAACTACAATTAAGTAGCGTCATAA----------------------------------------------------------------------CAA---------CAACAACA------------AGTACAACAGCAACAGCCAGTAACAATATGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---AATATTAA------------TAATAAAAGTATCATAAACGCT-----------------------GTAA---TTG----------------CTACTACCAAT--------ATACCATCATCA-G---CAAT---AGCAA---C------------------------AAC-----AACAGC
droEre2 scaffold_4845:12603528-12603757 - CAACCACAACAACAACAACAACATCA---------ACAACAACA------ACAACAACAAAATGT--------ACTACTACAA------------CAACAACAACAACAACTACAATTAAGTAGCGTCATAA----------------------------------------------------------------------------------CAACAACA------------AGTACAACAGCAACAGCCAGTAACAATATGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---AATATTAA------------TAATAAAAGTATCATAAACGCT-----------------------GTAA---TTG----------------CTACTACCAAT--------ATACCATCATCA-G---CAATAGCAGCAA---CAA---------------------CAGC--ATCATTATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAACAACAACAACAACAACACCAACA---------ACCACAACG------ACAACCCCAACAAAT--------GTGTTCACAA------------CGACAACAACGTCAACGACGATCT----------CAA----------------------------------------------------------------------------------ACCCAACA------------ACAACAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GTCGCC----GTCGCCTCTTATGATAAACCACAACCAATTGA--------CTGATTCTCATATTAA------------CCACGCACCTATCA--------------------------A-----------TAG----------------CCATAGCCAAGGACC--TTCCGG-------C-C---CACAGGCAGGAC---CAA---------------------CGG---GCCATGGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................AAT--------GTGTTCACAA------------CGACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAC---CAA---------------------CGG---GCCATGGGC2011.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAACCAATTGA--------CTGATT.......................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................GACGATCT----------CAA----------------------------------------------------------------------------------ACCCAACA------------ACAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................AACA------------ACAACAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GTCGCC----GTC..................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...........................................................ACAAAT--------GTGTTCACAA------------CGACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------CCACGCACCTATCA--------------------------A-----------TAG----------------CCATAGC...................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---CACAGGCAGGAC---CAA---------------------CGG---.........1911.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------CCATAGCCAAGGACC--TTCCGG-------C-C---C.....................................................2511.001010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CA------------ACAACAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GTCGCC----GTC..................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.....ACAACAACAACAACACCAACA---------ACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.331001000000000000000000000000000000000000000000000000000000000000
CAACAACAACAACAACAACACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102002000000000000000000000000000000000000000000000000000000000000
CAACAACAACAACAACAACACCAACA---------AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28180.061000100000000000000000000000000000000000000000000000000000000000
CAACAACAACAACAACAACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000100000000000000000000000000000000000000000000
...CAACAACAACAACAACACCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
....AACAACAACAACAACACCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAACATCCACAACCACAACAACTGTG---------TTCACAACG------CCAACAACGACGATC--------TCAAACCCAA------------CAACTACA---ACAACAACAAC-----------------------------------------------------------CACAA---------------------------------CAAATGCA------------------ACTGCAACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------TT-GTCGCC----GCCGCTTCTTATGATAAACCTCAACCAATTGA--------CTGATACTCATTATAA------------CCATGCATCCATCA--------------------------A-----------TAG----------------TCATAGCCAAGGATC--TGCAGG------------------------------------------------------A--------CCACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............ACAACAACTGTG---------TTCACAACG------CC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
..................CAACTGTG---------TTCACAACG------CCAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTTCTTATGATAAACCTCAACCA..........................................................................................................................................................................................................2611.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACCTCAACCAATTGA--------C............................................................................................................................................................................................2011.001100000
droGri2
A--CAACCACAACAAATGTGTTCACA---------ACGACAACA------ACCACAACA-----------------------------------------------ACATCGACGATCT----------CAA-------------------------------------------ACCCAA---------------------------------CAACTACA------------ACAACAA------CAA-------------------------------------------------------------------------------------------------------------------------------------------------------------TT-GTCGCC----GTCGCTTCTTATGATAAATTTCAACCAATTGA--------CTGATACTCATATTAACCACGCATCCAATAATGCACCCATCA--------------------------A-----------TAG----------------CCACAGCCAAGGACC--CACTGG------------------------------ACCACAGGTG-----------------------GGACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAATTGA--------CTGATACTC....................................................................................................................................................................................1911.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGACC--CACTGG------------------------------ACC..................................1911.00110
.....................................GACAACA------ACCACAACA-----------------------------------------------ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05110
droWil2
CAACAACAACAACTTGCAAACCAACA---------ACAACGACA------ACAACAACAACTTG--------------CAAAA------CAACGACAACA------ACAACTACAAC-----------------------------------------------------------CACGACAACAAC---AACAACAA---CTACAACCACGACGACGACG------------ACAACAACAACA-------------------------------------ACTTGCAAGCCAACAACA------------------------------ACGACAACAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTTGC--------AAACCAACAACA----------ACGACAA---CAA---------------------CAAC----AACTTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................GACGACG------------ACAACAACAACA-------------------------------------AC............................................................................................................................................................................................................................................................................................................................................................................21200.20440000
.................................................................................AA------CAACGACAACA------ACAACTACAAC-----------------------------------------------------------CACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2960.17101000
.............................................................................................GACAACA------ACAACTACAAC-----------------------------------------------------------CACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.17100100
...............................................................................................................................................................................................AACAACAA---CTACAACCACGACGACGACG------------...............................................................................................................................................................................................................................................................................................................................................................................................................................2860.17100100
..................................................................................................................................................................................................AACAA---CTACAACCACGACGACGACG------------...............................................................................................................................................................................................................................................................................................................................................................................................................................2570.14100100
.......................................................................................................................................................................................................................GACGACG------------ACAACAACAACA-------------------------------------ACT...........................................................................................................................................................................................................................................................................................................................................................................2270.14110000
.........................................................................................................................................................................................................................CGACG------------ACAACAACAACA-------------------------------------ACTTGC........................................................................................................................................................................................................................................................................................................................................................................2370.14101000
.........................................................................................................................................................................................................................CGACG------------ACAACAACAACA-------------------------------------ACTTGCA.......................................................................................................................................................................................................................................................................................................................................................................2470.14101000
.....................................................................................................................................................................................................AA---CTACAACCACGACGACGACG------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................2480.13100100
..........................................................................................................................................................................................................CTACAACCACGACGACGACG------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................2180.13100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA----------ACGACAA---CAA---------------------CAAC----AACTT..2690.11101000
......................AACA---------ACAACGACA------ACAACAACAACTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.11101000
......................................................................................................................................................................................................................................................................................................AACAACA------------------------------ACGACAACAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTT.................................................................................2690.11101000
..........................................................................................................................................................................................................................GACG------------ACAACAACAACA-------------------------------------ACT...........................................................................................................................................................................................................................................................................................................................................................................19130.08101000
...........................................................................................................................................................................................................................................................................................................................................ACGACAACAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTTGC--------.......................................................................21160.06101000
...........................................................................................................................................................................................................................ACG------------ACAACAACAACA-------------------------------------ACTTGC........................................................................................................................................................................................................................................................................................................................................................................21160.06101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAA---CAA---------------------CAAC----AACTTGC21160.06101000
......................................ACGACA------ACAACAACAACTTG--------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.06101000
.................................................................................................................................................................................................................CACGACGACGACG------------ACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................18170.06110000
dp5
CTACAACAACAACCACTACAACAACA---------ACCACGACT------ACAACAACCACGAC--------------AACAA------CAACCACGACAACGACAACAACCACGACG-ACAACCACCACTA----------------------------------------------------------------------CTAC---CACAACACCAACA---------------ACGACAACTACAACC-------------------------------ACTTGCTCGACAACAACA------------------------------ACCACGACGACAA----------------------------------------------------------------------------------------------------CCAC-------------T----------ACAA------------CAA-----------------------------------------------------------------------CAACCACT--------ACAACAACAACC-A---CG---ACTACAA---------------------------CAAC----CACGACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................TGCTCGACAACAACA------------------------------ACCACGACGAC...................................................................................................................................................................................................................................................................................................................2660.1710000000001
.....................................................................................................................................................................................................................................................................................................CAACAACA------------------------------ACCACGACGAC...................................................................................................................................................................................................................................................................................................................1960.1710000000001
droPer2
CAACAACAACAACAACAACAACAGCA---------GCAACAACA------ACAGCAGCAACAACA--------GCAGCAACAA------------CAACAGCAGCAACAACAACAGCA----------GCAA----------------------------------------------------------------------------------CAACAACA------------ACAACAACAGCAGCAGCCGCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AA-------GTTCGTACCTATG-----------------------GAA------------CGATGAAGGTGCCCTCGTCGCCGGTGG--CAAGCAATGCC------CCA---CTG----------------CTAGAGCGGAA--------GAACAGTCAACAAGGAGGA---GCCACAG---GAG---------------------CAG--------CAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCC------CCA---CTG----------------CTAGAGC...................................................................................1913.003300000
..............................................................................................................................................................................................................................................................CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AA-------GTTCGTACCTATG-----------------------GAA------------C................................................................................................................................................................2212.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTATG-----------------------GAA------------CGATGAAGGTGCCCTCGT...............................................................................................................................................2811.001001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG--CAAGCAATGCC------CCA---CTG----------------CTAGAGC...................................................................................2711.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAGGAGGA---GCCACAG---GA.....................................2111.001010000
..............................................................................................................................................................................................................................................................CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AA-------GTTCGTACCTATG-----------------------................................................................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTCAACAAGGAGGA---GC...............................................2111.001010000
..........................................................................................................................................................................................................................................ACAACAACAGCAGCAGCCG............................................................................................................................................................................................................................................................................................................................................................................................................1940.251001000
.........................................................................................................AACAACAACAGCA----------GCAA----------------------------------------------------------------------------------CAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.....................CAGCA---------GCAACAACA------ACAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
...............................................................CA--------GCAGCAACAA------------CAACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
......................................................................................................AGCAACAACAACAGCA----------GCAA----------------------------------------------------------------------------------CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000
................................................................A--------GCAGCAACAA------------CAACAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
..................................................................................................CAGCAGCAACAACAACAGCA----------GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.....................................AACAACA------ACAGCAGCAACAACA--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.........................A---------GCAACAACA------ACAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000
.............AACAACAACAGCA---------GCAACAACA------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
droAna3
CAACAACAAAAACAAAAAAAACAACA---------ACAACAACA------ACAACAACAACAACA-----------ACAACGA---------------------------CAACAAC-----------------------------------------------------------CGCAA---------------------------------CGGCAA---------------------------CGA----------------------------------------TCTCAACGGCGCCGCAACGATCTCAA----------------------------GGCGGTGGTG------------------GCGGCGGGATCCTCCGGGAGCGATTACGTCGACGACCAATTCCTGTCCGCCGATT-----------------------------------ATT---GTTATTGA-------------GGTGACGATAGCGATAGCACT-----------------------GTTG---TTG----------------TTGCTGTCGTT---------------------------------GTAT---------------------------CGGC----AATTGTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........AAACAAAAAAAACAACA---------ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG---TTG----------------TTGCTGTCGTT---------------------------------GTAT---------------------------CGGC----.......2611.001100000
...............................................................................................................................................................................................................................................................................................................GCAACGATCTCAA----------------------------GGCGGTG..........................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................GA---------------------------CAACAAC-----------------------------------------------------------CGCAA---------------------------------CGGCAA---------------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------TTGCTGTCGTT---------------------------------GTAT---------------------------CGGC----.......2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGATTACGTCGACGACC................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGA-------------GGTGACGATAGC....................................................................................................................................................2011.001010000
..............................................................ACA-----------ACAACGA---------------------------CAACAAC-----------------------------------------------------------CGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................................................................A----------------------------------------TCTCAACGGCGCCGCAAC.....................................................................................................................................................................................................................................................................................................................................................1911.001010000
.................................................................................GA---------------------------CAACAAC-----------------------------------------------------------CGCAA---------------------------------CGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..........................................................................................................................................................................................................................................................................................................................AA----------------------------GGCGGTGGTG------------------GCGGCGG..............................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATAGCACT-----------------------GTTG---TTG----------------T.........................................................................................1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................GACGACCAATTCCTGTCCGC...................................................................................................................................................................................................................................2011.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................GATCCTCCGGGAGCGATTACGTCG......................................................................................................................................................................................................................................................2411.001010000
...............................................................................................................................................................................................................................................................................................................................................................GTG------------------GCGGCGGGATCCTCCGGGAG.................................................................................................................................................................................................................................................................2311.001100000
................................................................A-----------ACAACGA---------------------------CAACAAC-----------------------------------------------------------CGCAA---------------------------------CG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
......................................................CAACAACAACA-----------ACAACGA---------------------------CAACAAC-----------------------------------------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
................................................................A-----------ACAACGA---------------------------CAACAAC-----------------------------------------------------------CGCAA---------------------------------CGGCAA---------------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.............................................................AACA-----------ACAACGA---------------------------CAACAAC-----------------------------------------------------------CGCAA---------------------------------CGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
........AAAACAAAAAAAACAACA---------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.171010000
.......AAAAACAAAAAAAACAACA---------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.141010000
......CAAAAACAAAAAAAACAACC---------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091010000
................AAAAACAACA---------ACAACAACA------AC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droBip1
CAACGACAACCACAACAACACCAACT---------TGCGCCCCT------ACAACTACAACAACC--------ACCACGACTA---CAACGACCACC---------ACAACAACAAC-----------------------------------------------------------CACCACCACAACAACAACAACCACCACCAC---CACTACAACGACA------------ACCACAACAACA-------------------------------------ACTTGCGCCCCTACAACT------------------------------ACAACAACCACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACT--------ACAACAACAACC-A---CCAC---TACAACAACAA---------------------CCAC----CACTACASizeHit CountTotal NormTotal
No Reads
droKik1
CAACAACAACAACTTCAACAGCAGCA---------GCTCTCACA------CCAACAACAATACAA--------ATCGAATCAA------------CAACGACG---AAGACA--------------------------------------------------------------------A---------------------------------CAACAA---------------------------CAA----------------------------------------TCCCAACAAAACAACGATA---T------------------------------------TAACATCAACAACACACCCTGTCACAACAAGAGCTCC----AACTACAACAACAGCAACTAGTGGCTGCCCAACAGCT--------------------------------------------------------------------------------GCT-----------------------TTAA---TAA----------------CTGCATTCAACAGCA--TTGCAGCCATATTG-G---TA---TTAGCAA---------------------------CTGA----AAATGGASizeHit CountTotal NormTotal
No Reads
droFic1
CTTCAGCAACAACAACAACATCTATAACATCATCAACAACAACA------ACAACAACAGTATTT--------A---------------------CAACAGCAATAGCAG--------------------------------------------------------------------ACAACTAATAACCAACAGTAGCTGCAAT---TGCAACATCAACA---ACAACGACGAAAACAA------CAA----------------------------------------TCCCAACAGTG------------------------------ACAACTAT-------------------------------------------------------------------------------------------------------------------------------------TTAA------------CAACGATAA----------------------------------------------------------------------------------TATCAACAGCG-G---CAAGAACTGCGA---TAACCACAG---------------------------GCASizeHit CountTotal NormTotal
No Reads
droEle1
CAACAACCACAACACTAGCAACAACC---------ACCG--GCA------ATAGCACCACCA-----------CCAACAACAA------------TAACAGCAGCAACAACAACGGC-----------------------------------------------------------CACAA---------------------------------CAGTAGCA------------ACAACAACATT-GTAACC-------------------------------GTA-----------------------------------------------------------------------------CA---CGCCG---------------------------------------------------T---------------------------------------------------------ACTGAACAACCCACCCACCAACATTGCAGGTGGTGCAGCCGACGCC-----GCCACCGTTG----------------CGATTGCCAAGGACATGTTGCAGCTGCATCA-T--GGC---GCAGCAG---CGG---------------------CAG--------CAGCSizeHit CountTotal NormTotal
No Reads
droRho1
CAACCACTTGTGC------CCCAACA---------ACAACGACA------ACCACCACAACCAC-CACCACCAC-GACTACGACCACAA------CCACCACGACCACAACCACAACC--------------------------------------------------------------------------------ACGACCAC---------AACCACAACT---------ACAACGACAACGACAACC-------------------------------ACTTGTGCCCCAATAACC------------------------------ACGACAACCACAA----------------------------------------------------------------------------------------------------CCACCTGAGGCTCCAACTACA----------A------------CTA---CAACTACAACC-----------------------AC------------------------------AACCACTTGT--------G------CCCCA-A---CAACAACGACAA---C-------------------------------AACCACASizeHit CountTotal NormTotal
No Reads
droBia1
CAACAACTACTACGACAACAACTACC---------ACTACAACG------ACCACCACGACCACC--------ACAACCACAA------------CTACTACAACCACAACTACGACC----------ACGA----------------------------------------------------------------------------------CAACAACA------------ACGACAACAACACCAG-------------------------------------------------------AACAGCCCCCCTGTGAGCCAACCACCACTACAAC-----------------------------------------------------------------------------------------ACCAGATGAGCCC---------------CCAAAAGAG----------A------------TAA---CAACCACAACA-----------------------ACACCAAAG---CCAGAAGAGCCCTGCGAGCCCACGACCA---------------------------------CTACAA---CAC---------------------CAACTCCAGACCAGCSizeHit CountTotal NormTotal
No Reads
droTak1
CAACCACCACAACAACAACAACAACT---------ACATCAACA------ACAACAACAAAATGT--------ACTACTACAA------------CA---------ACAACTACAATTAAGTAGCGCCATAA----------------------------------------------------------------------------------CAACAACA------------ACTACAACAGCAACAGCCAGTAATAATATGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---AATATTAA------------TAATAAAAGTATCATAAACGCT-----------------------GTAA---TTG----------------CTACTACCAATAATA--TAATACCATCATCA-G---CAATAGCAGCAA---CAA---------------------CAA--------CAGCSizeHit CountTotal NormTotal
No Reads
droEug1
CCACAACCACAACCACAACCACAACC---------ACAACCACAACCACAACCACAACGACATGT--------GCTCCAACAA------CAACGACGACT------ACGACGACA----------------A------------------------CCACAACAAC----------CACCACCACTACAACTACAACTACCACCAC------GACCACTACT---ACA------ACGACAACTACA-------------------------------------ACATGCGCTCCAACAACA------------------------------ACTACCACCACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACT--------ACCACAA---CC-A---CC---ACCACCA---------------------------CCAC----CACGACTSizeHit CountTotal NormTotal
No Reads
dm3
CAACAACAACAGCAACAACAACAACA---------ACAGCAGCA------ACACCAACAACAGCC--------GCTACACCAA------------CAACAACA-----------------------------------------------------------------------------------------------------------------------------------ACTGCAACACCAGCAA-CAGCAACAACACCACCAACAACACTATCAACAACATGCCATTCAACACCA------------------------------GCAATCACAACAG----------------------------------------------------------------------------------------------------CAGGCTAG--------CAAAATCTCATA----------------------------------------------------------------------------------------------TCGTGGCA--TTTTCACCA----------------------------CCACAGGCAACGCGATGAACGCAGC----AGCTGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................CACAACAG----------------------------------------------------------------------------------------------------CAGGCTAG--------CAAAATC......................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAACGCGATGAACGCAGC----AGC....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCATA----------------------------------------------------------------------------------------------TCGTGGCA--TTTTCACCA----------------------------CC..................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAACGCGATGAACGCAGC----AGC....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ACAACAACAACA---------ACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CAGCAA-CAGCAACAACACCA................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ACAACAACA---------ACAGCAGCA------ACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010
...........GCAACAACAACAACA---------ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AACAACAACAGCAACAACAACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................CACCAGCAA-CAGCAACAACA...................................................................................................................................................................................................................................................................................................................................................................................................20100.1010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AACAACAACAGCAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............CAACAACAACAACA---------ACAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........CAGCAACAACAACAACA---------ACAGCAGCA------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AACAACAACAGCAACAACAACAACA---------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AACAACAACAACA---------ACAGCAGCA------AC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ACAACAGCAACAACAACAACA---------AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACAGCAACAACAACAACA---------ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CAACAACAACA---------ACAGCAGCA------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.................ACAACAACA---------ACAGCAGCA------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................ACAACAACA---------ACAGCAGCA------AC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................ACAACAACA---------ACAGCAGCA------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
CAACAACAACAGCAACAACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAACAACAACAACA---------ACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CAACAGCAACAACAACAACA---------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACAGCAACAACAACAACA---------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AACAACAACAACA---------ACAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............CAACAACAACA---------ACAGCAGCA------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......CAACAGCAACAACAACAACA---------ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ACAACAACAGCAACAACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AACAACAACAGCAACAACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GCAACAACAACAACA---------ACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACAGCAACAACAACAACA---------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAACAACAACAACAACAACCACCACC---------ACAACAACAACAACATCAACAACAAAATGT--------ACTACTAC------------------AACAACAACAACTACAATTAAGTAGCGTCATAA----------------------------------------------------------------------------------CAACAACA------------AGTACAACAGCAACAGCCAGTAACAATATGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAATAATATTAA------------TAATAAAGGTATCATAAACGCT-----------------------GTTA---TGG----------------CTTCTACCAAT--------ATAACATCATCA-G---CA---ACAACAA---C------------------------AGC-----ATCATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................ACAACAACTACAATTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
........ACAACAACAACCACCACC---------AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.20100010000000000000
droSec2
CAACAACAACAACAACACC-ACAACA---------TCATCATCA------ACAACCACAACAAGC--------AAACAGACAA------------CAA--GCG---AAAGCA----------------ACAACAGCAACACCGAGTGCGTTGGCTCACCAGGCAACCATACACAATCACAC---------------------------------CAACAGCA------------ACAACAACAGCTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------ACAACAACACGA----------GCAGCAA---CAA---------------------CAGC----AACTGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CAACAACCACCACAACAACAACATCA---------ACAACAACA------ACAACAACAAAATGT--------ACTACTACAA------------CA---------ACAACTACAATTAAGTAGCGTCATAA----------------------------------------------------------------------CAA---------CAACAACA------------AGTACAACAGCAACAGCCAGTAACAATATGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---AATATTAA------------TAATAAAAGTATCATAAACGCT-----------------------GTAA---TTG----------------CTACTACCAAT--------ATACCATCATCA-G---CAAT---AGCAA---C------------------------AAC-----AACAGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................A---------CAACAACA------------AGTACAACAGCAACA................................................................................................................................................................................................................................................................................................................................................................................................................2422.00400000000004
............CAACAACAACATCA---------ACAACAACA------ACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.00200000000002
......................................................................................................................................................................................................................CAACAACA------------AGTACAACAGCAACAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
.................ACAACATCA---------ACAACAACA------ACAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.20101000000000
...........ACAACAACAACATCA---------ACAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.14100000010000
....................................CAACAACA------ACAACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001
droEre2
CAACCACAACAACAACAACAACATCA---------ACAACAACA------ACAACAACAAAATGT--------ACTACTACAA------------CAACAACAACAACAACTACAATTAAGTAGCGTCATAA----------------------------------------------------------------------------------CAACAACA------------AGTACAACAGCAACAGCCAGTAACAATATGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT---AATATTAA------------TAATAAAAGTATCATAAACGCT-----------------------GTAA---TTG----------------CTACTACCAAT--------ATACCATCATCA-G---CAATAGCAGCAA---CAA---------------------CAGC--ATCATTATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCT-----------------------GTAA---TTG----------------CTACTACCAAT--------A......................................................................2511.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCAGCAA---CAA---------------------CAGC--ATC......2111.0010000100
...........................................................................TACTACAA------------CAACAACAACAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3311000000
..........................................................................CTACTACAA------------CAACAACAACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310100000
.....................................AACAACA------ACAACAACAAAATGT--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2011000000
................AACAACATCA---------ACAACAACA------AC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.1310100000
...............................................................................................CAACAACAACAACAACTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.0910100000

Generated: 05/19/2015 at 12:39 PM