ID:

dvi_4061

 Coordinate:

scaffold_12855:5653668-5653818 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.6 -31.2 -31.2

Flybase annnotation

CDS [Dvir\GJ10276-cds]; exon [dvir_GLEANR_10210:1]; intron [Dvir\GJ10276-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1_DVirRCHelitron-
mature
  1. scaffold_10233:58-78 +
  2. scaffold_12100:144195-144215 +
  3. scaffold_12726:1262718-1262738 +
  4. scaffold_12728:753923-753943 -
  5. dvi_23469  scaffold_12799:231052-231072 -
  6. dvi_4061  scaffold_12855:5653668-5653688 -
  7. scaffold_12932:1048555-1048575 -
  8. scaffold_12937:106474-106494 +
  9. scaffold_12937:119528-119548 +
  10. scaffold_12954:778508-778528 -
  11. scaffold_12954:815985-816005 -
  12. scaffold_12954:841732-841752 -
  13. scaffold_12954:846745-846765 -
  14. scaffold_12954:1868787-1868807 +
  15. scaffold_12954:1872104-1872124 +
  16. scaffold_12958:1705660-1705680 -
  17. scaffold_12970:4839403-4839423 +
  18. scaffold_13049:888344-888364 +
  19. scaffold_13049:23066484-23066504 +
  20. scaffold_13322:81-101 +
  21. scaffold_13045:642752-642772 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACAGCCAGGCGCCTATTGTGATCAGTACAGCCCGTTTCTGGATTGTGAAGGTGAGCTATTTATGAGAATATATACTTTAGATTAACCAAAATTTCAGTGGAGAATTCAATACTCATGATTTTAGACCGAAGCTAAGACCTATCAATTAAAGATGTTGGGAATTTTTATACCCTGAACCCATTAAAAATGGGTTTAAGGGTATATTGTATCCAAAATCCAAATGTATGTAACAGACAGAAGAAAGCATCTCC
**************************************************(((((.((((.....((((...((((..(((((......))))).))))....)))))))))))))..((((((.......))))))((((.((........)).))))........(((((((((((((((...))))))))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 SRR060681
Argx9_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR060655
9x160_testes_total
 SRR060658
140_ovaries_total
 SRR060670
9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 V053
head
 SRR060687
9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060673
9_ovaries_total
 SRR060688
160_ovaries_total
....................................................................................................................................................................................TTAAAAATGGGTTTAAGGGTATATTG............................................. 26 0 20 2.00 40 5 9 0 7 0 6 6 1 0 0 4 0 0 1 0 0 0 1 0 0 0 0 0 0
ACAGCCAGGCGCCTATTGTGATCA................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGCTATATTGTATGCAAAATGCAAATGT........................... 28 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCCAAATGTATGTAACAGACAGAAG........... 25 0 20 0.90 18 4 0 0 9 0 0 0 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATGGGTTTAAGGGTATAT............................................... 24 0 20 0.60 12 0 5 0 1 0 0 0 0 0 0 1 0 0 1 2 0 0 1 0 0 0 0 1 0
.......................................................................................................................................................................................................................TCCAAATGTATGTAACAGACAGAAGAA......... 27 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCCAAATGTATGTAACAGACAGA............. 23 0 20 0.50 10 5 0 0 2 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTCCTGGATTGTGATGGTG...................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CATATATACTTTAGATTGA...................................................................................................................................................................... 19 2 12 0.25 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................TATGTAACAGACAGAAGAAAGCATC... 25 0 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCCAAATGTATGTAACAGACAGAAAAA......... 27 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATGGGTTTAAGGGTATATT.............................................. 25 0 20 0.20 4 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATGTAATAGACAGAAGAAAGCATCTCC 27 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATGGGTTTAAGGGTATATTGT............................................ 27 0 20 0.20 4 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................TCCAAATGTATGTAACAGACAGAA............ 24 0 20 0.15 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATGGGTTTAAGGGTA.................................................. 21 0 20 0.15 3 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........CGTATTGTAATCAGTAGAGC............................................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................TTAACCGAAATTTCAGGG........................................................................................................................................................ 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATGGGTTTAAGGGTATATTGTA........................................... 28 0 20 0.10 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCAAATGTATGTAACAGACAGAAG........... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATGGGTTTAAGGGT................................................... 20 0 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................TCCAAATGTATGTAACAGACAG.............. 22 0 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CTTTCTGGATTTTGAGGGTG...................................................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................TTAACCGAAATGTCAGGGG....................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATGGGTTTAAGGGTGTATTGTA........................................... 28 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATGGGTTTAAGGGTATA................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................ATGGGTATAAGGGTATATTGTATCC........................................ 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TAAAAATGGGTTTAAGGGTATATTGTA........................................... 27 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATGGGTTTAAGGG.................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATCGGTTTAAGGGTATATTG............................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AATCCAAATGTATGTAACAGACAGAAA........... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATGGGTTTAAGG..................................................... 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCCAAATGTATGTAGCAGACAGA............. 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CTAAAAATGGGTTTAAGGGTATATTG............................................. 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAAAATGGGTTTAAGCGTATATTG............................................. 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTCGGTCCGCGGATAACACTAGTCATGTCGGGCAAAGACCTAACACTTCCACTCGATAAATACTCTTATATATGAAATCTAATTGGTTTTAAAGTCACCTCTTAAGTTATGAGTACTAAAATCTGGCTTCGATTCTGGATAGTTAATTTCTACAACCCTTAAAAATATGGGACTTGGGTAATTTTTACCCAAATTCCCATATAACATAGGTTTTAGGTTTACATACATTGTCTGTCTTCTTTCGTAGAGG
**************************************************(((((.((((.....((((...((((..(((((......))))).))))....)))))))))))))..((((((.......))))))((((.((........)).))))........(((((((((((((((...))))))))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060675
140x9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 V047
embryo
.....................................................................................................................................TTCCGGATAGTTAATTAC.................................................................................................... 18 2 13 0.08 1 0 1 0 0 0
..................................................................................................................................................................AAAATATGGGACTTGGGTAATTTTTACC............................................................. 28 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................TAATATTTTCCCAAATTCCCAG.................................................. 22 3 20 0.05 1 0 0 0 0 1
......................................................................................................................................................................TATGGGACTTGGGTAATTTTTACC............................................................. 24 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................AAAAATATGGGACTTGGGTAATTTTTA............................................................... 27 0 20 0.05 1 0 0 1 0 0
................................................................................................................................................................TAAAAATATGGGACTTGGGTAATTTT................................................................. 26 0 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:5653618-5653868 - dvi_4061 ACAG-------CCAGGCGC-----------------CTATTGTGATCAGTACA-------------------GCCCG----TTTCTGGATTGTGAAGG---------TG----------------------------------A-----GCTA-TTTATGAGAATATA------------------------TA-------------------------------CTTTAGATT--------------------------------------------------------------------AACC-----------------AAAAT--------T-TC---------------------------------------------------------------AGTGGAGAA-------T-------------------------------TCAATACTCATGATT---TTA----------------------------------------------------------GACCGAAG---------CTAA------GACCTATCAATTAAAG----ATGTTGG--------------------------------GAATTTTTATACCCTGAACCCATTAAAAA-TGGGTTTAAGGGTATATTGTATCCAAA----ATCCAAATGTATGTAACAGACAGAAGAAAGCATCTCC
droMoj3 scaffold_6500:29996053-29996289 + GCAG-------CCGC-TGC-----------------TTACT-------GCG------------CAG-------------------------TTAG-------------------------------------------------------CAG-AG-------------------------------------------------------------------------------------------------------------CGCGTGCTTATAAGTGCATGTGTATG-----------TATGTGTGC----A-------------------------TAACA--------------GT---------------------GCAGAATGATTAGAATATC-AG------------------------------------------------------------C---T-------------TAGAGG-----GTTCAGGG---------TATCT------------CAT-----AGTTGAG----CTGT------------CTCATTAGGA----GCCTTCT--------------------------------TACTTGTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTG-T-------GAAAAGTATGTAACAGGCAGAAGGAATCATCGCA
droGri2 scaffold_14853:5207226-5207412 - TATA-------TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATT-ATATAGTAT----AC-----------ACAGTAT-A-TAGATGATTATATAG--TGCGTGT------------T----------------------------------------------------------------T-----------------------------TTGGCCATGGGCG----------------------------------------------------------------------------ACATGCTTATTATCG----AC--TCT--------------------------------GGTTTTTTATACACTGAACCCACTGCAAATGGTTGGAAAGGGTATAATGAAGTGGTG-------CAAGGTTATGTAACGGGCAGAAGTTAGCATCTCC
droWil2 scf2_1100000004943:2794647-2794867 - ACAC-------AAAGACAC-----------------CTTTT-----TTGGC-------------CAGTATCAGTGCC--AATTTTCCGATTTTAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATATAAG----TATCAGTT-TACT-----------------AAAAT--------G-T------------------------------------TCCTATTTTC-----------------G------------------------------------------------TAAAAAATCACCACCTTT----------------GTA------------------------------------------A-----AC---------CTAA------AAATTTTCGTTTAAAA----TTCTTAT-------------------------------ATATTTATTATACCCTT----------------GCACAAAGGGTATATTAATTTTGGT-------CAGAAGTGTGCAACGCATAGAAGGAAGTATCTCA
dp5 XL_group3a:2005717-2005915 - GTTA-------AGAC-------------------------------TAGCGAC-------------------ATATA-------------------------------------------------------------------------------------------------------T---AGAATATATATTATGTATTATTAC-----------------------------------------AATTACTATTACGATACCCA-------------------------------------------------------GG------------------------------------------------------------------------------CTTGCAAA---------------------------TGCAGTCGGAAACAGAAGATC--------------------------------------------------------------------------------------------------------------TAT----ACCCTCT--------------------------------TTATTTTTATACCCGATACTCAA----AA-AGAGTATAGGGATATATTAGATTTGTGGTGACAGTGGATGTGTGTAACACCCAGAAGGAAGCGTTTCC
droPer2 scaffold_26:350334-350554 - ACAG-------TTGGGGGCAGAGAGAGGCTGAGAGA-----G------CACTGTTTTGCA------GTAAGGGT--CTACCCCTTG----------------------------------------------------------------------------------------------------------------------------------------CGAGA-------------------------------------------GTATATATGTACATACATATA-----------TATGAATGT----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGAAG---------CATA------CCCA----AATTTAAA----TGAAA-------------------------------CACGTGTTTTTATACCCAATACTAAA----AT-TGAGTATAGGGGTATATTCGATTTTTGGTGAATGTGGATGTGTGTAACGTCCAGAAGCAAGCGTTTCC
droAna3 scaffold_13339:108194-108411 + ATTG-------TTAT-------------------------------TAGAACC-------------------GTTTG----TTT-------------------------------------------------------------------------ATA-------------AGGTTTTTTAAAAAATTTGCGCTTAATCTAAATAC-----------------------------------------ATTCTTAATCTTGATGATCT-------------------------------------------------------CT------------------------------------------------------------------------------CTTGAAAA---------------------------CTGGGCCGACAA------------------------------------------------------------TATTCAA------------TAGCTTTT---------GTAT------TACTGAACGATCAAAA----ATGTTGT--------------------------------ACATTTTTATACCCTT-----GC-------------AGACGGTATTATACTTTTGGT-------CAAAAGTGTGCAACGCAGTGAAGGAGACATCTCC
droBip1 scf7180000393146:585-804 - TTGT-------AAT--------------------------------CAGTGTT-------------------GCCAG----GTACTGAGC--TCAAAA---------TA----------------------------------G-----GCTAGATTTTGGGTAAAAA------------------------TA-------------------------------GGCTAGAATAGGCTAAAAC-----TCAGAAAA-------------ATGTCTGAAAAATAAGCTATATATTCAAATT-TAATAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAC------------CACATTAAAG----TAATT-------------------------------TTCATGTTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGT-------CAAAAGTGTGCAACGCAGTGAAGGAGACATCTCC
droKik1 scf7180000302610:530121-530355 - ATGC-------GGT------------------------------------GTT---------------------------------------------------------------------------------------------------A-ATTATGAT------TTACCC------TTAGGAAACC------------------CCCTGGATCG------------------CTAGGAATTTCA-----------------------------------------------------------CGGAAATTTA-----------TAGGAAT-TTACAGAATTGT-AGAG---GAATTT---------------------TCA---------------------GGAAAATTAAAATTCATCTTTTTACAAGAATA------------------------------------------------------------------------------------------------AAA---------TTAAGATCTTGA---ACTAATTAAAT----ATATTTT--------------------------------AAATTATTATACCCTT--------------------GCAGGGTATTATAATTTCAGT-------CAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCC
droFic1 scf7180000454160:4278-4493 - GTTT-------CTG-----------------------------------TATT--------------------------------------TTCAACG---------------------------------------------------ATTG-TTTATA-------------CG------AAAGCTA----TA-------------------------------CGATATAGT-CGTCCGAATTTTA-----------------------------------------------------------TTAAATTTAA-----------TTCG-AAATTCAAGAGTCATTAGAAAACTCTATAATTCAAAAATTG-TGCTTTTCTG-----------------A------------------------------------------------T--------------------------------------------------------------------------------------------------------------------GA-------AAAACAA--------------------------------CGATTTTTATACCCTT-----GC-------AGAGCAAAAGGGTATTATAATTTCAGT-------CAGAAGTTTGCAACGCATTGAAGGAGACACCTAA
droEle1 scf7180000491175:18278-18480 + ATCA-------TGGT-------------------------------TTGTGTA-------------------GTCCA--TAATTTCGGATT-------------------------------------------------------------------------------------------------------------------TGGTTGTAGCTACCAGCAATA------------------ATAAGTACA------------------------------------------------TTA--TTGAAT-----TTATTA----TCTG-GA--------------------------------------------------------------------------------------------------------------------------------ATT---T------------------AAGATAAGTCAATTAGTT----------------------TAA-----AATTTAATATT-----------A----T-------CT--T--TATGAA--------------------------------TTGTTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTCAGT-------CAGAAGTTTGCAACGCAGTGAAGGAGACATCTCC
droRho1 scf7180000779687:13456-13726 - TTAT-------TAG--------------------------------CATTACT-------------------GACCTT--GTCTTT--------GGAGTTTTTAAAATTACCTATTTAAAACGGATTTTAAACTGGCAAACCTA-----CCAA-AGCTTCTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------TTCCATTCTA-----------------G------------------------------------------------TAAATATTATCTATCCTTTTT----------------------------------------------------------GACCTATA---------TGTT------GA----TCTATCAAAACT--ATGTGTCGAATTGGTATACCCCTAATTTAGGTCTTCTATTAATAATTATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTGTATTCGTG-------CAAAAGTATGTAACAGGTAGAAGGAAGCGTTTCC
droBia1 scf7180000302299:30543-30781 - CCCG-------TTAC-------------------------------TCGAA-------------TA-------------------------GTAAAAG----------------------------------------------GGTAGACTA-GATATAAT-------------------------------------------------------GCTAGAAACAACA--------------------------------------------------------------------TTTTAACT-----------------AAAAT--------G-T----------------------------------------------------------------GGTGCTCTC-------G-------------------------------TCAATACCTATCATT---T------------------GAGGCAAAACATTTGGCCACGCCCACTCGA------------A----------------CACC------CACAAACCGCTTAAAACTGTGGGGCCA--------------------------------CAATTTTTATACCCGTTACTTTT-------AGAGTAAAAGAGCATACTAGATTCGTC-------AGAAAGTATGTAACAGGTAAAAAGAAGCGTTTCC
droTak1 scf7180000415386:180176-180393 + AAAC-------CCT------------------------TCTGGGATGAGCA-------------------------CTTCCTCTTG----------------------------------------------------------------------------TAA------------------------------------------------------GTGAAACA-------------------------------------------------------ATAATTATAAATATAAATA-TAATAATAAATATTTA----------TTTA-GA----------------------------------------------------------------------------A-------TTCAAAATTTAACAAGATAG------------------------------------------------------------------------------------------------TGG---------TTCAC-----AACAAAATGATTAAAT----AACCCGA--------------------------------AGATTATTATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTGTATTCGTG-------CAAAAGTATGTAACAGCTAGAAGGAAGCATTTCC
droEug1 scf7180000409456:1102500-1102695 - TTTT-------GAG--------------------------------------------------------------------------ATTATAAAAA---------TG----------------------------------A-----GCAA-AACGTCAGTATGCA----------------------------------------------------------------ATCAACTAATAT-----ACAAAAAA-----------------------------------------ATA-TAAT-----------------------------------------------------------------------------------------------------GAAAA--------------------------------------ATAAATAACCTACATT---T-------------GAGAGA-----------------------------------------------AG---------CTAA------------GACATTA--------ATTTTG--------------------------------TCATTTTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAGATTCGTT-------GAAAAGTATGTAACAGATAGAAGGAAGCTTTTGC
dm3 chr2R:1098927-1099148 - AGAAAAATCCGATT--------------------------------TTGTG-------------TA-------------------------GTAGAGA----------------------------------------------ATCATGTTA-TTCATGAT-----------------------------------------------------------------TTA-----GATCAGCATATCG-----------------------------------------------------------TAAAATTTAG-----------TTTGAAA-ATA-CAAGTTTTAATAA--TATATTA------------T----------------------------------------------------------------CTGGGTCGAGAATAAGAA-------------------------------------------------------------------------------TTGTAACCCCT---------------GCTAATTCAA-----------------------------------------------AGTATATATCCCTTTTTCTT-------AAAGTAAAAGGGTATACTAGGCTCGTT-------CGAAAGTATGTAACAGGCAGAAAGAAGCGTTTCC
droSim2 2l:22172875-22173075 + CGTT-------TATT-------------------------------GC-----------TTTAAAA-------------------------TTAA------------------------------------------------------ATTA-TTT-------------------------AATG--------------------AGTTCGTAATCACTTGAAATA-------------------------------------------------------------------------A-----------------TAATTATAAT--------T-TAAGTGCCTTTATAA--TACAATA------------A----------------------------------------------------------------T-----------------------------TTA----------------------------------------------------------A-----CCGTAACTGTT-----------A----C-------CA--ACTTGACTG--------------------------------TTGTTTTTATACCCGATACTCGT-------AGAGTAAAATGATATACTAGCCCCGTT-------GAAAAGTATACACGAGGCAGAAGGAAGCCTTTTC
droSec2 scaffold_99:6516-6709 - CCCG-------TTTC-------------------------------TTGGC-------------TATC----AAAACT--GTCTTC--------GGTGTGTATACACAATTCTAT--------------------------------------------------------------------------------------------------------------------------CTAAAAA-----GCAAAGAAG----------------------------------------TTA-----------------TAATTATACA--------T-TAGGGTT--------------------------------------------------------------------------------------------------------------------AT----------------ATATCATTCA-----------------------------------------------AG---------TTAA------------CCCATTG-----------------------------------------------AGCATTTATACCCGTTACTCTA-------CGAGAAACGGGGTATACGAGATTCGTT-------GAAAAGTAT-TAACAGGCAGAAGAAAGCGTTTAG
droYak3 v2_chrUn_2120:3140-3345 - TAAA--ACCCGTTTT-------------------------------TC-----------ATTGAAT-------------------------TTAG-------------------------------------------------------TTA---------------------------------------------GTTTTAAGAG-----------------------------------------GTACACAACTTAGA-------------------------------------------------------TAATTATT-T--------T-TA----------------------------------------------------------------------------------------------------AGGGTGG--------------------------------AGATCGTTT-------------------------TTCATTGAATATAGTTAG-----ATTTAAG----AGGT-----------------CACAA----ACTAAGA--------------------------------TAATTATTATACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAGATTCGTT-------GAAAAGTATGTAACAGGGAGAAGGAAGCGTTTCC
droEre2 scaffold_4929:1682439-1682654 + GATC-------AGT------------------------------------GTATTTTGAA------ATATGAGT-----------------------G---------TG----------------------------------------------------------------ACATATATCAAAAAATT------------------TGTCAAGCTGCTACCGATT------------------CTATATTTT------------------------------------------------TAAT-----------------GGAAA--------C-T-ACTTCCATTATTC--TATATTA------------A----------------------------------------------------------------T--CGA------------------------T-------------GAGTG------------------------------------------A-----AT---------TTTA------------A-------AA----TGTATGT--------------------------------ATGTTTTTATACCAGTTACTCGT-------CGAGTAAAAGGCCATACTAGATTCGTT-------GAAAAGTATGTAGCAGGCAGAAGGAAGCGTTTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACAG-------CCAGGCGC-----------------CTATTGTGATCAGTACA-------------------GCCCG----TTTCTGGATTGTGAAGG---------TG----------------------------------A-----GCTA-TTTATGAGAATATA------------------------TA-------------------------------CTTTAGATT--------------------------------------------------------------------AACC-----------------AAAAT--------T-TC---------------------------------------------------------------AGTGGAGAA-------T-------------------------------TCAATACTCATGATT---TTA----------------------------------------------------------GACCGAAG---------CTAA------GACCTATCAATTAAAG----ATGTTGG--------------------------------GAATTTTTATACCCTGAACCCATTAAAAA-TGGGTTTAAGGGTATATTGTATCCAAA----ATCCAAATGTATGTAACAGACAGAAGAAAGCATCTCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAA-TGGGTTTAAGGGTATATTG.................................................26202.0040000000004000100000000000596100060070100000000000000000000000000
ACAG-------CCAGGCGC-----------------CTATTGTGATCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGACAGAAG...........25200.9018000000000000000000000000400001003090100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAA-TGGGTTTAAGGGTATAT...................................................24200.6012000000001000100000000001050100000012000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGACAGAAGAA.........2720.501000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGACAGA.............23200.5010000000000000000000000000503000000020000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGAAAGCATC...2540.251000001000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAA-TGGGTTTAAGGGTATATT..................................................25200.204000000000000000000000000201000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAA-TGGGTTTAAGGGTATATTGT................................................27200.204000000000000000000000000010000020000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGACAGAA............24200.153000000000000000000000000200010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAA-TGGGTTTAAGGGTA......................................................21200.153000000000000000000000000020000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAA-TGGGTTTAAGGGTATATTGTA...............................................28200.102000000000000000000000000011000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGTATGTAACAGACAGAAG...........24200.102000000000000000000000000200000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAA-TGGGTTTAAGGGT.......................................................20200.102000000000100000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGACAG..............22200.102000000000000000000000000010010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAA-TGGGTTTAAGGGTATA....................................................23200.051000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAA-TGGGTTTAAGGGTATATTGTA...............................................27200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAA-TGGGTTTAAGGG........................................................19200.051000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----ATCCAAATGTATGTAACAGACAGAAA...........27200.051000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAA-TGGGTTTAAGG.........................................................18200.051000000000000000000000000001000000000000000000000000000000000000
droMoj3
GCAG-------CCGC-TGC-----------------TTACT-------GCG------------CAG-------------------------TTAG-------------------------------------------------------CAG-AG-------------------------------------------------------------------------------------------------------------CGCGTGCTTATAAGTGCATGTGTATG-----------TATGTGTGC----A-------------------------TAACA--------------GT---------------------GCAGAATGATTAGAATATC-AG------------------------------------------------------------C---T-------------TAGAGG-----GTTCAGGG---------TATCT------------CAT-----AGTTGAG----CTGT------------CTCATTAGGA----GCCTTCT--------------------------------TACTTGTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTG-T-------GAAAAGTATGTAACAGGCAGAAGGAATCATCGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAATGGGAAATCAGGGTATAATGG................................................27200.55111100000
................................................................................................................................................................................................................................................................................................................................................................................................................TC-AG------------------------------------------------------------C---T-------------TAGAGG-----GTTCAGGG---------TATC.......................................................................................................................................................................................................24200.153000030
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGGAAATCAGGGTATAATG.................................................24200.102200000
............CGC-TGC-----------------TTACT-------GCG------------CAG-------------------------TTAG-------------------------------------------------------CAG-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.........................................................................................................................................................................................................................................................................................................................................................A--------------GT---------------------GCAGAATGATTAGAATA..........................................................................................................................................................................................................................................................................................................................20200.051010000
.........................................................................................................................................................................................................................................................................................CATGTGTATG-----------TATGTGTGC----A-------------------------TA...................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------TACTTGTTATACCCTGAACCCATT..........................................................................25200.051100000
..........................................................................................................................................................................................................................................................................................ATGTGTATG-----------TATGTGTGC----A-------------------------TA...................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAATGGGAAATCAGGGTATAA...................................................25200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAATATC-AG------------------------------------------------------------C---T-------------TAGAGG-----............................................................................................................................................................................................................................21200.051100000
................................................................AG-------------------------TTAG-------------------------------------------------------CAG-AG-------------------------------------------------------------------------------------------------------------CGCGTGCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTG-T-------GAAAAGTATGTAACAGGCAG..............27200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................TC-AG------------------------------------------------------------C---T-------------TAGAGG-----GTTCAGGG---------TATCT------------..........................................................................................................................................................................................25200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................TAGAATATC-AG------------------------------------------------------------C---T-------------TAGAGG-----G...........................................................................................................................................................................................................................20200.051000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATAATGGTTTTG-T-------GAA...............................19200.051000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAATGGGAAATCAGGGTATAATGG................................................28200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGAACCCATTGAAAATG...................................................................21200.051100000
................TGC-----------------TTACT-------GCG------------CAG-------------------------TTAG-------------------------------------------------------CAG-AG-------------------------------------------------------------------------------------------------------------CGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
..................C-----------------TTACT-------GCG------------CAG-------------------------TTAG-------------------------------------------------------CAG-AG-------------------------------------------------------------------------------------------------------------CGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAATCATCGCA21200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGGAAATCAGGGTATAAT..................................................22200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................ATGATTAGAATATC-AG------------------------------------------------------------C---T-------------TAGAGG-----G...........................................................................................................................................................................................................................25200.051000010
............................................................................................TAG-------------------------------------------------------CAG-AG-------------------------------------------------------------------------------------------------------------CGCGTGCTTATAAGTGCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAATGGTTTTG-T-------GAAAAGTATG........................25200.051000010
droGri2
TATA-------TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATT-ATATAGTAT----AC-----------ACAGTAT-A-TAGATGATTATATAG--TGCGTGT------------T----------------------------------------------------------------T-----------------------------TTGGCCATGGGCG----------------------------------------------------------------------------ACATGCTTATTATCG----AC--TCT--------------------------------GGTTTTTTATACACTGAACCCACTGCAAATGGTTGGAAAGGGTATAATGAAGTGGTG-------CAAGGTTATGTAACGGGCAGAAGTTAGCATCTCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACAC-------AAAGACAC-----------------CTTTT-----TTGGC-------------CAGTATCAGTGCC--AATTTTCCGATTTTAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATATAAG----TATCAGTT-TACT-----------------AAAAT--------G-T------------------------------------TCCTATTTTC-----------------G------------------------------------------------TAAAAAATCACCACCTTT----------------GTA------------------------------------------A-----AC---------CTAA------AAATTTTCGTTTAAAA----TTCTTAT-------------------------------ATATTTATTATACCCTT----------------GCACAAAGGGTATATTAATTTTGGT-------CAGAAGTGTGCAACGCATAGAAGGAAGTATCTCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGT-------CAGAAGTGTGCAACGCAT................25200.25500050
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGT-------CAGAAGTGTGCAA.....................20200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGT-------CAGAAGTGTGCAACGCATAG..............24200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGTGCAACGCATAGAAGGAAGT......26200.05101000
dp5
GTTA-------AGAC-------------------------------TAGCGAC-------------------ATATA-------------------------------------------------------------------------------------------------------T---AGAATATATATTATGTATTATTAC-----------------------------------------AATTACTATTACGATACCCA-------------------------------------------------------GG------------------------------------------------------------------------------CTTGCAAA---------------------------TGCAGTCGGAAACAGAAGATC--------------------------------------------------------------------------------------------------------------TAT----ACCCTCT--------------------------------TTATTTTTATACCCGATACTCAA----AA-AGAGTATAGGGATATATTAGATTTGTGGTGACAGTGGATGTGTGTAACACCCAGAAGGAAGCGTTTCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGTGTG........................2356.2031014000021500
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGT...........................2065.3332020002001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAA----AA-AGAGTATAGGGA........................................................2415.0050500000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGTGT.........................2264.172501610005300
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGTG..........................2163.672201400102500
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATG............................1963.171901110100600
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGTGGATGTGTGTAACACC.................2313.0030200100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTCAA----AA-AGAGTATAGGGA........................................................2312.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATACTCAA----AA-AGAGTATAGGGA........................................................2512.0020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAA----AA-AGAGTATAGGG.........................................................23101.301301210000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGACAGTGGATGTGT.........................2161.1770700000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGTGGATGTGTGTAACAC..................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------TGCAGTCGGAAACAGAAGAT...............................................................................................................................................................................................................................................................2111.0010000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCGGAAACAGAAGATC--------------------------------------------------------------------------------------------------------------TAT----ACCC.....................................................................................................................................2711.0010000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATATTAGATTTGTGGTGACAGTGG...............................2711.0010000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------------------------------------------------TAT----ACCCTCT--------------------------------TTATTTTTATACCC....................................................................................2511.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGTGTGTAACA...................2821.0020200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGAT.............................1860.8350500000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGACAGTGGATG............................2340.7530200000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGTGTGTAA.....................2630.6720200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----AA-AGAGTATAGGGATATATTAGAAA.............................................2720.5010000000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAA----AA-AGAGTATAGGGAA.......................................................2520.5010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGACAGTGGATGT...........................1960.5030200100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGACAGTGGATGTGTGTAA.....................2530.3310100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGACAGTGGATGTG..........................1960.3320100000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGA...........................2090.3330000000300
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGACAGTGGATGTGTGTAAC....................2530.3310000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGTGTGTAAC....................2730.3310000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGTGA.........................2270.2920000000200
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGACAGTGGATGTGTGT.......................2040.2510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGTGTGT.......................2440.2510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGACAGTGGATGTGTGT.......................2340.2510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGTGTGTA......................2540.2510000000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGGATATATTAGATTTGTGG........................................2340.2510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGACAGTGGATGTGT.........................2740.2510000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGACAGTGGA..............................2140.2510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGACAGTGGATGT...........................2440.2510000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGACAGTGGATGT...........................2150.2010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGACAGTGGATGTGTG........................2250.2010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGGATATATTAGATTTGTG.........................................2160.1710100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTCAA----AA-AGAGTATAGGG.........................................................22120.1720200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGACAGTGGATGTG..........................2060.1710100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACAGTGGATGTGT.........................1960.1710100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGTTA.........................22120.1720200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAA----AA-AGAGTATAGG..........................................................22130.1520200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGACAGTGGATGTT..........................2190.1110100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACCCAGAAGGAAGCGTTTCC24200.1020100000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATACTCAA----AA-AGAGTATAGG..........................................................23110.0910100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGACAGTGGATAA...........................19140.0710100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACACCCAGAAGGAAGCGTTT..27170.0610100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACACCCAGAAGGAAGC......25200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATATTAGATTTGTGGT.......................................19200.0510000000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAGATTTGTGGTGA.....................................19200.0510000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACCCAGAAGGAAGCGTTTC.24200.0510000001000
droPer2
ACAG-------TTGGGGGCAGAGAGAGGCTGAGAGA-----G------CACTGTTTTGCA------GTAAGGGT--CTACCCCTTG----------------------------------------------------------------------------------------------------------------------------------------CGAGA-------------------------------------------GTATATATGTACATACATATA-----------TATGAATGT----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGAAG---------CATA------CCCA----AATTTAAA----TGAAA-------------------------------CACGTGTTTTTATACCCAATACTAAA----AT-TGAGTATAGGGGTATATTCGATTTTTGGTGAATGTGGATGTGTGTAACGTCCAGAAGCAAGCGTTTCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTTGGTGAATGTGGATGTGT.........................2420.501010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA----AT-TGAGTATAGGGGC.......................................................18200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGTGTAACGTCCAGAA............20200.051010000
droAna3
ATTG-------TTAT-------------------------------TAGAACC-------------------GTTTG----TTT-------------------------------------------------------------------------ATA-------------AGGTTTTTTAAAAAATTTGCGCTTAATCTAAATAC-----------------------------------------ATTCTTAATCTTGATGATCT-------------------------------------------------------CT------------------------------------------------------------------------------CTTGAAAA---------------------------CTGGGCCGACAA------------------------------------------------------------TATTCAA------------TAGCTTTT---------GTAT------TACTGAACGATCAAAA----ATGTTGT--------------------------------ACATTTTTATACCCTT-----GC-------------AGACGGTATTATACTTTTGGT-------CAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGGAG........21201.15232300000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGCAGTGAAGGAGACATCTC.24200.051000001
droBip1
TTGT-------AAT--------------------------------CAGTGTT-------------------GCCAG----GTACTGAGC--TCAAAA---------TA----------------------------------G-----GCTAGATTTTGGGTAAAAA------------------------TA-------------------------------GGCTAGAATAGGCTAAAAC-----TCAGAAAA-------------ATGTCTGAAAAATAAGCTATATATTCAAATT-TAATAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAC------------CACATTAAAG----TAATT-------------------------------TTCATGTTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGT-------CAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCSizeHit CountTotal NormTotal
No Reads
droKik1
ATGC-------GGT------------------------------------GTT---------------------------------------------------------------------------------------------------A-ATTATGAT------TTACCC------TTAGGAAACC------------------CCCTGGATCG------------------CTAGGAATTTCA-----------------------------------------------------------CGGAAATTTA-----------TAGGAAT-TTACAGAATTGT-AGAG---GAATTT---------------------TCA---------------------GGAAAATTAAAATTCATCTTTTTACAAGAATA------------------------------------------------------------------------------------------------AAA---------TTAAGATCTTGA---ACTAATTAAAT----ATATTTT--------------------------------AAATTATTATACCCTT--------------------GCAGGGTATTATAATTTCAGT-------CAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCSizeHit CountTotal NormTotal
No Reads
droFic1
GTTT-------CTG-----------------------------------TATT--------------------------------------TTCAACG---------------------------------------------------ATTG-TTTATA-------------CG------AAAGCTA----TA-------------------------------CGATATAGT-CGTCCGAATTTTA-----------------------------------------------------------TTAAATTTAA-----------TTCG-AAATTCAAGAGTCATTAGAAAACTCTATAATTCAAAAATTG-TGCTTTTCTG-----------------A------------------------------------------------T--------------------------------------------------------------------------------------------------------------------GA-------AAAACAA--------------------------------CGATTTTTATACCCTT-----GC-------AGAGCAAAAGGGTATTATAATTTCAGT-------CAGAAGTTTGCAACGCATTGAAGGAGACACCTAASizeHit CountTotal NormTotal
No Reads
droEle1
ATCA-------TGGT-------------------------------TTGTGTA-------------------GTCCA--TAATTTCGGATT-------------------------------------------------------------------------------------------------------------------TGGTTGTAGCTACCAGCAATA------------------ATAAGTACA------------------------------------------------TTA--TTGAAT-----TTATTA----TCTG-GA--------------------------------------------------------------------------------------------------------------------------------ATT---T------------------AAGATAAGTCAATTAGTT----------------------TAA-----AATTTAATATT-----------A----T-------CT--T--TATGAA--------------------------------TTGTTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTCAGT-------CAGAAGTTTGCAACGCAGTGAAGGAGACATCTCCSizeHit CountTotal NormTotal
No Reads
droRho1
TTAT-------TAG--------------------------------CATTACT-------------------GACCTT--GTCTTT--------GGAGTTTTTAAAATTACCTATTTAAAACGGATTTTAAACTGGCAAACCTA-----CCAA-AGCTTCTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------TTCCATTCTA-----------------G------------------------------------------------TAAATATTATCTATCCTTTTT----------------------------------------------------------GACCTATA---------TGTT------GA----TCTATCAAAACT--ATGTGTCGAATTGGTATACCCCTAATTTAGGTCTTCTATTAATAATTATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTGTATTCGTG-------CAAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCSizeHit CountTotal NormTotal
No Reads
droBia1
CCCG-------TTAC-------------------------------TCGAA-------------TA-------------------------GTAAAAG----------------------------------------------GGTAGACTA-GATATAAT-------------------------------------------------------GCTAGAAACAACA--------------------------------------------------------------------TTTTAACT-----------------AAAAT--------G-T----------------------------------------------------------------GGTGCTCTC-------G-------------------------------TCAATACCTATCATT---T------------------GAGGCAAAACATTTGGCCACGCCCACTCGA------------A----------------CACC------CACAAACCGCTTAAAACTGTGGGGCCA--------------------------------CAATTTTTATACCCGTTACTTTT-------AGAGTAAAAGAGCATACTAGATTCGTC-------AGAAAGTATGTAACAGGTAAAAAGAAGCGTTTCCSizeHit CountTotal NormTotal
No Reads
droTak1
AAAC-------CCT------------------------TCTGGGATGAGCA-------------------------CTTCCTCTTG----------------------------------------------------------------------------TAA------------------------------------------------------GTGAAACA-------------------------------------------------------ATAATTATAAATATAAATA-TAATAATAAATATTTA----------TTTA-GA----------------------------------------------------------------------------A-------TTCAAAATTTAACAAGATAG------------------------------------------------------------------------------------------------TGG---------TTCAC-----AACAAAATGATTAAAT----AACCCGA--------------------------------AGATTATTATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTGTATTCGTG-------CAAAAGTATGTAACAGCTAGAAGGAAGCATTTCCSizeHit CountTotal NormTotal
No Reads
droEug1
TTTT-------GAG--------------------------------------------------------------------------ATTATAAAAA---------TG----------------------------------A-----GCAA-AACGTCAGTATGCA----------------------------------------------------------------ATCAACTAATAT-----ACAAAAAA-----------------------------------------ATA-TAAT-----------------------------------------------------------------------------------------------------GAAAA--------------------------------------ATAAATAACCTACATT---T-------------GAGAGA-----------------------------------------------AG---------CTAA------------GACATTA--------ATTTTG--------------------------------TCATTTTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAGATTCGTT-------GAAAAGTATGTAACAGATAGAAGGAAGCTTTTGCSizeHit CountTotal NormTotal
No Reads
dm3
AGAAAAATCCGATT--------------------------------TTGTG-------------TA-------------------------GTAGAGA----------------------------------------------ATCATGTTA-TTCATGAT-----------------------------------------------------------------TTA-----GATCAGCATATCG-----------------------------------------------------------TAAAATTTAG-----------TTTGAAA-ATA-CAAGTTTTAATAA--TATATTA------------T----------------------------------------------------------------CTGGGTCGAGAATAAGAA-------------------------------------------------------------------------------TTGTAACCCCT---------------GCTAATTCAA-----------------------------------------------AGTATATATCCCTTTTTCTT-------AAAGTAAAAGGGTATACTAGGCTCGTT-------CGAAAGTATGTAACAGGCAGAAAGAAGCGTTTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............T--------------------------------TTGTG-------------TA-------------------------GTAGAGA----------------------------------------------ATCATGTTA-TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TA-----GATCAGCATATCG-----------------------------------------------------------TAAAATTTAG-----------TT................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGTT-------CGAAAGTATGTAACAGGCG...............2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TCAGCATATCG-----------------------------------------------------------TAAAATTTAG-----------TTTGA.............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGGCTCGT..........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................TTCATGAT-----------------------------------------------------------------TTA-----GATCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACCCCT---------------GCTAATTCAA-----------------------------------------------AGT............................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TCCGATT--------------------------------TTGTG-------------TA-------------------------GTAGAGA----------------------------------------------ATCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAAGAAG.......2441.0040000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TATTA------------T----------------------------------------------------------------CTGGGTCGAGAATAAGAA-------------------------------------------------------------------------------TTG...............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TTTAATAA--TATATTA------------T----------------------------------------------------------------CTGGGTCGAGAA.......................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................T-----------------------------------------------------------------TTA-----GATCAGCATATCG-----------------------------------------------------------TAAAATTTAG-----------..................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TCG-----------------------------------------------------------TAAAATTTAG-----------TTTGAAA-ATA-CAAGT.................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................ATGAT-----------------------------------------------------------------TTA-----GATCAGCATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAAGAAGCGTTTCC2440.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGCAGAAAGA.........2360.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAAGAA........2340.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGCAGAAAGAA........2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAAGAAGCGTTTCC2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAAGAAGCGTTTC.2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAAGAAGCGTTTCC2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAA...........20120.2530000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGCAGAAAGA.........2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------AAAGTAAAAGGGTATACTAG................................................21180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAAAGGGTATACTA.................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGCAGAA............18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAATT.........22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------AAAGTAAAAGGGTATACTA.................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droSim2
CGTT-------TATT-------------------------------GC-----------TTTAAAA-------------------------TTAA------------------------------------------------------ATTA-TTT-------------------------AATG--------------------AGTTCGTAATCACTTGAAATA-------------------------------------------------------------------------A-----------------TAATTATAAT--------T-TAAGTGCCTTTATAA--TACAATA------------A----------------------------------------------------------------T-----------------------------TTA----------------------------------------------------------A-----CCGTAACTGTT-----------A----C-------CA--ACTTGACTG--------------------------------TTGTTTTTATACCCGATACTCGT-------AGAGTAAAATGATATACTAGCCCCGTT-------GAAAAGTATACACGAGGCAGAAGGAAGCCTTTTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATACCCGATACTCGT-------AGAG................................................................2440.50200100001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------GAAAAGTATACACGAGGCAGAAGGA.........2620.50100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................TAA--TACAATA------------A----------------------------------------------------------------T-----------------------------TTA----------------------------------------------------------A-----CC................................................................................................................................................................................1820.50100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATGATATACTAGCCC.............................................2020.50100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------AGAGTAAAATGATATACTAGCCCCGT..........................................2720.50100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------AGAGTAAAATGATATA....................................................1730.33100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGT-------AGAGTAAAA...........................................................15200.10200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT-------AGAGTAAAATG.........................................................15200.05100000000001000000
droSec2
CCCG-------TTTC-------------------------------TTGGC-------------TATC----AAAACT--GTCTTC--------GGTGTGTATACACAATTCTAT--------------------------------------------------------------------------------------------------------------------------CTAAAAA-----GCAAAGAAG----------------------------------------TTA-----------------TAATTATACA--------T-TAGGGTT--------------------------------------------------------------------------------------------------------------------AT----------------ATATCATTCA-----------------------------------------------AG---------TTAA------------CCCATTG-----------------------------------------------AGCATTTATACCCGTTACTCTA-------CGAGAAACGGGGTATACGAGATTCGTT-------GAAAAGTAT-TAACAGGCAGAAGAAAGCGTTTAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCGTTT..21200.0510100
droYak3
TAAA--ACCCGTTTT-------------------------------TC-----------ATTGAAT-------------------------TTAG-------------------------------------------------------TTA---------------------------------------------GTTTTAAGAG-----------------------------------------GTACACAACTTAGA-------------------------------------------------------TAATTATT-T--------T-TA----------------------------------------------------------------------------------------------------AGGGTGG--------------------------------AGATCGTTT-------------------------TTCATTGAATATAGTTAG-----ATTTAAG----AGGT-----------------CACAA----ACTAAGA--------------------------------TAATTATTATACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAGATTCGTT-------GAAAAGTATGTAACAGGGAGAAGGAAGCGTTTCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
TAAA--ACCCGTTTT-------------------------------TC-----------ATTGAAT-------------------------TTAG-------------------------------------------------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGGAGAAGGAAGCGTT...25200.05100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTAGATTCGTT-------GAAAAGTA..........................25200.05100010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGGAGAAGGAAGCGTTTC.27200.05101000000000
droEre2
GATC-------AGT------------------------------------GTATTTTGAA------ATATGAGT-----------------------G---------TG----------------------------------------------------------------ACATATATCAAAAAATT------------------TGTCAAGCTGCTACCGATT------------------CTATATTTT------------------------------------------------TAAT-----------------GGAAA--------C-T-ACTTCCATTATTC--TATATTA------------A----------------------------------------------------------------T--CGA------------------------T-------------GAGTG------------------------------------------A-----AT---------TTTA------------A-------AA----TGTATGT--------------------------------ATGTTTTTATACCAGTTACTCGT-------CGAGTAAAAGGCCATACTAGATTCGTT-------GAAAAGTATGTAGCAGGCAGAAGGAAGCGTTTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/19/2015 at 12:48 PM