dvi_3999

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTTTCGGCCCACGTCATGTGCGCAATCTTATCTAATTTATAAGTAGATAATAAATAATGATAGCTCATCAAAGAGATAAAAATGAACTAATTAATTTAGTAACTGAGCTCCAATAAAATCATTATTAAACAGGCTCATAAACCATTTCCAAGCAGATAAAAATTACGCGACCGAAAAAAAACTTACCTCATTTTGTTGCAGCACCCAACACCAGCAGCAGCAGCATCAGCGGCAGCATCAGCAGCGTCGGC *********************************************************************************************.......(((.....((((((((............(((...........((((...((.............))....)))).........)))..)))))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528803 follicle cells	M047 female body	M061 embryo	SRR060678 9x140_testes_total	SRR1106725 embryo_14-16h	SRR1106730 embryo_16-30h	V116 male body	SRR060675 140x9_ovaries_total	SRR060686 Argx9_0-2h_embryos_total
.............................................................................................AATTAGTAACTGAGC...............................................................................................................................................	15	1	14	2.57	36	36	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GGCAGCATCAGCAGCGTCGGC	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................AGCGGCAGCATCAGCAGCGTC...	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................CCGAAAAAAAACTTACCTCATTTTGTTGCAG..................................................	31	0	1	1.00	1	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................AAAATTACGCGACCGAAAAAAAACTTACCT...............................................................	30	0	1	1.00	1	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................CAGCGGCAGCATCAGCAGCGTCG..	23	0	1	1.00	1	0	0	0	0	0	0	1	0	0
...............................................................................................TTAGTAACTGAGCTCCACT.........................................................................................................................................	19	1	1	1.00	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CACCCAACACCAGCAGCAGCA.............................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...............................................................................................TTAGTAACTGAGCTCCAAT.........................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CAGCAGCAGCATCAGCGGCAG................	21	0	6	0.17	1	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................AGCAGCAGCAGCATCAGCGGC..................	21	0	6	0.17	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AGCGGCATCAGCGGCAGCGTCAGCA........	25	2	8	0.13	1	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ACCAGCAGCAGCAGCATC........................	18	0	10	0.10	1	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCAGCAGCATCAGCGGCA.................	18	0	13	0.08	1	0	0	0	0	0	0	0	0	1

AAAAGCCGGGTGCAGTACACGCGTTAGAATAGATTAAATATTCATCTATTATTTATTACTATCGAGTAGTTTCTCTATTTTTACTTGATTAATTAAATCATTGACTCGAGGTTATTTTAGTAATAATTTGTCCGAGTATTTGGTAAAGGTTCGTCTATTTTTAATGCGCTGGCTTTTTTTTGAATGGAGTAAAACAACGTCGTGGGTTGTGGTCGTCGTCGTCGTAGTCGCCGTCGTAGTCGTCGCAGCCG ************************************************.......(((.....((((((((............(((...........((((...((.............))....)))).........)))..)))))))))))*********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060657 140_testes_total	V053 head	SRR060680 9xArg_testes_total	SRR060658 140_ovaries_total	SRR060660 Argentina_ovaries_total	SRR060687 9_0-2h_embryos_total	M047 female body	SRR060686 Argx9_0-2h_embryos_total
.............................................................................................................................................................................................................GTTGTGGTCGTCGTCGTCGTA.........................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................................................................TGGTAAGGGTTCGTCTAGTTTG.........................................................................................	22	3	4	0.25	1	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................AAAACAACGTAGTGGGTTA..........................................	19	2	5	0.20	1	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................TTGTCGTAGTCGCCGTCGTA.............	20	1	8	0.13	1	0	0	0	0	0	1	0	0
................................................................................................................................CTTCCGAGTATGTGGTAAAG.......................................................................................................	20	3	8	0.13	1	0	0	0	0	1	0	0	0
......................................................................GTCTGTATTTTTACTTGATT.................................................................................................................................................................	20	2	10	0.10	1	0	1	0	0	0	0	0	0
....................................................TTATTTCTATCTATTAGTTTCT.................................................................................................................................................................................	22	3	10	0.10	1	0	1	0	0	0	0	0	0
....................................................................................................................................................................................TGAATGGCGCAAGACAACGT...................................................	20	3	14	0.07	1	0	1	0	0	0	0	0	0
.....................................................................TGTCTCAATTTTTACTTGACT.................................................................................................................................................................	21	3	15	0.07	1	0	1	0	0	0	0	0	0
.........................................................ACCATCGAGGAGTTTTTCTA..............................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	1
.............................................................................................................................................................................................................GTTGTGGTCGTCGTCGTCGT..........................	20	0	20	0.05	1	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12855:5374857-5375107 -	dvi_3999	TTTTCGGCCC---------A-------------------------CGT-------CA----------------TG---TGC-------------G-CAA-TCTTATCTA-ATTTA-TAAGTAGATAATAAATAA---------------------------------------------------------------TGATAGCTCATCAAAGAGATAAAAAT-------------------------------------------------GAAC-----------------------------TAATTAATTTAGTAACTGAGCTCCAATAAAATCATT-----------------------------------------------------------------------------------------------------ATTAAACAGGCTCATAAACCAT----TTCCAAGCAGATAAAAAT-----------------------TAC---------------------------------------------GCG-------------------------------------------------------------------------------------------------------ACCGAAAAAAAAC----------------------------------------------TTACCTCATTT----------TGTT------------------GCA-----GCACCCAA-----CACCAGCAG----------------------CA---GCAGCATCAGCGGCAG-CATCAGC---------AGCGTCGG-----C
droMoj3	scaffold_6540:3714663-3714874 +		CCTGCGTCA-------------------------------------------------------------------------------TGCGGAA-CTA-TCTTATCTA-AT--------------------------------------------------------AGATAA---TAACAA-----TAAAAATAATA-------------------------ATCATTGCTCGTAAAGGTTTA-------------------------ATGAAT-----------------------------TAATTAATACAGTCAATGAAATGGAATAAAAACATTATCAATTTAATGAATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGGCTGACTAATGGATAAAACAAAAATTTG-TTTCT----------------------------------------------CTCATTC----------GATT------------------ACA-----GCACCA------------------------------------------------------AACAG-CATCAGC---------AGCAACAG-----C
droGri2	scaffold_14906:8620299-8620512 +		TGTGTGATCC---------A-------------------------ATTGCG---TCA----------------T----TGC-------------A-CAA-TCTTATCAATATTTACGAATTGGATATTAAGTAATCATAATATTCATTATATTATTGGCCAT----------AAGAGCGATAA------------------------------------CAATAATC---------------------------------------------GAAT-----------------------------TAATTAACATGATAGCTTAAATCAAATAAAAGCAT--------------------------------------------------------------------------------------------------------------------------------------------A-AAAT-----------------------CACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAC----------------------------------------------TTGCCTCATTT----------TGTT------------------GCA-----GCACCA------------------------------------------------AACACCAGCAG-CAACCGC---------AGCAGCAG-----C
droWil2	scf2_1100000004511:1046893-1047119 +		TTTCTTTTAT---------A-------------------------TTT-------CA----------------GA---TGT-------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTAAAATATTTAATCATCA-----------------------------------------------------------------------------------------AGTAAATTTG------------------------A-TTAATGTAGTTAATG-----------------------------------------------------------------------------------------TAGGTTAAAATAAAATTAATCTAAAGACTAAATTCAAAAATTTTTTTTATCATAATTTCT----------------------CTC---------------------------CATTTTCCATAACATAGAA------------------------------------------------------TTATCCTATT--------TTA----------AAAT------------------GAA-----ATATTTGTTA------AGA-------------------------CA---AAAAAATAATTGGCTG-CAAGATT-CGCCAAATAGTGAAAA-----C
dp5	XR_group6:8816543-8816683 -		AACACCAACA---------AAAACACTAACAACAGC------A--C---CAAAAA--CAACAG--------------------------------------------------CACC-----------------------------------------------------AA-------------------AAACATCG-----------------------------------------------------------------------AA----------------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------------------------------------TAACGCCAACAAAAACACCGACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------ACA-----GAACCTAGAA---CAACAACAA----------------------CA---CCAACAACAACAGCAA-CATCAAC---------AACAACAA-----A
droPer2	scaffold_12092:403-565 +		ACCAATTAAT---------G-------------------------CCG---CATCAA------------------------------------------------------------------------------------------------------------------------CAACAA-----CAAAAACAG-----------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------AGTAGCCGCCCACAACAGCCAT----AGCCTGTAACACAAATAC-----------------------CACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAA----------------------------------------------GCACCCCATCA----------AGCT------------------GCA-----GCATCGTCTA------CAG---------CCATAATAACAT----CA---ACTACAACATCGTCTG-TGGCTGC---------AGCCCCGG-----C
droAna3	scaffold_12943:4167671-4167839 -		AATTTTAAAA---------T---------------------------------------------------------------------------------------------TA-AAAGGA-AAAA------------------------------------------------------------TAAAAAA---------------------------------------------------TAATAATATAAAAAGTAAAAATTGT--AAAT-----------------------------TACTTCATTTAGTTA---------------------------------------------------------------------------------------------CTTTGCCCCACAGTAAC---------------------TAGC---------------------------------------------------------AG-------------------------------------------------------------------------------------------------CAGCCAAATGCTAATAAAATAATAAATC--------------------------------------------G-------------------------------------------------------------------------------------------------AA---TGGCAA-------------------------CA---GCAGCAGCAGCAGCGG-CAGCAGC---------AGCAATAG-C---A
droBip1	scf7180000396741:1853275-1853440 +		ATAAAATCT-------------------------------------------------------------------------------TTCTAAAA-TTG-TCT----------------------------------------------T----------C----------AA---GTGT------ATA-AAACATTG-----------------------------------------------------------------------TA------------------------------------------------------------------------TATTTTATATATAGAAATACACAATTATACAAATCTACATTAAGCTG----------------------ACCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCTCG----------------------------------------------AGC----------GGTT------------------ATA-----GCAACTGAGA---CGTTGGCAG----------------------CG---ACAGCGACTGCGGCAG-AAGCAAA---------AGCAGCAG-----C
droKik1	scf7180000302696:1867690-1867936 +		ATAAAAAATG---------AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTATAAAAT-------------------------------------------------CATTAAAGTAGAGTTTCCAATAATAA-----------------------------------------------------------------------------------------ACTAACTCTT------------------------A-AAGTTACA--------------------------------------------------------------------------------------------GTTTTAATTCCAATTCAAAATTTTATAAATATATAATTAAAAAACAAACTTAATCAAAAGTAGA----------------------C-----------------------------AATGTTCCATAAACAATAATTACAACCAAATAAAAAC-TCCCCTA---------AA----------------------------------AAGCAACAGCAATGAGC--------------------------------------------AG---------CAATAATGGCAATGACCA---G--GAGCCAAGAGCAA-CGCCAGC---------AGCAGCAG-----C
droFic1	scf7180000453970:8805-9010 -		TTATCAAAGAAATATCAGTGATT------CA-----GTGAATT--CTG---AATATGTGACATCAGTGATTTTA-AAGTTCAAAACTTCGTC------------------------------------------------------------------------------AAAA---ACGT------TAAAAAA---------------------------------------------------CATCATTTTAAAGTTC----------------------------------------------------------------------------------------------------------------------------------------------------AAAAATTCGT-----------------------------------------------------------------------------------CAAAA-------------------------------------------------------------------------------------------------------------------------AAAAATAAATC--------------------------------------ATCTGTGAACGGCATTGGCATC--------------------------------------------------------------------A-----GCAACAAC-----AATTAGCAG----------------------CG---GCGGCATCAACGGCAG-AATTATC---------GGCATCAG-----C
droEle1	scf7180000486474:29271-29457 +		AAAGAGAGAA---------A-------------------------ACG---GAATAA----------------T-AAACGCAGAATCCTGTCGAAC-CGG-TTT----------------------------------------------A----------TATAAATAGATAA---GCGC------ATAAAAACAACG-------------------------TTCATTACG---------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------AAGAATGTGC-----------------------------------------------------------------------------------CCTAAAACGATG-------------------------------------------------------------------------------------------------CAACCAAGTGCCTAAG-------------------------------------------TTTT-TTGTTCGCG----------------------------------------------AGG----------AG-----------------------------------------CAGCAGCAT----------------------CA---GCAGCATCAGCAGCAG-CAGCAGC---------AGCAACAG-----C
droRho1	scf7180000769597:26716-26891 -		AATTTTTGCC---------C--------------------------------------------------------------------------------------------------------------------------------------------AT----------AAAAGCGAGAAAGTTCAAGAAA---------------------------------------------------CAACAA------------------------------------------------------------CTTGAATACC----------------------------------------------------------------------------------------------------AGCAGCGACAGTAGAAGAAGGTTTAAATGAAGTCATAGACCAAAATCTTAGAAGCAG------------CTAAAACAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTG----------------------------------------------------------------------------------------CAGCAG---------CAACAAACG-------CAGCAGTACCTACTGCAGCAG-CAGCAGC---------AACATCAA-----C
droBia1	scf7180000302292:2183761-2183879 -		CAATAAAACT---------ATTAAGC-CATTAGTAAGCCAAAC-----ACGAGTACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGC------------------------------------------------------------------------------CAGAAAACAA---------------------------------------------------------------------------------------------------------------------------ACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG---------TGCAGC--------------------------------------------------------------------A-----GCAACAGTCA---CCGCTG-------------------------CA---GCAGCAGCAGCAGCAG-CAACAGC--------AAGCGCAGG-----A
droTak1	scf7180000415862:25438-25603 +		AAATGAATTA---------AAAAAACATTCA-----ATTAATT--T---CATATAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAC------------------------------------------------------------------------------AATTAAACAAATCAGA-----ACTT----TCCTATTAAAATGTATTTATTTGTCCCACAGCAAACGCAGCTGA--------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---------TTCAGC--------------------------------------------------------------------A-----G---------------CAG---------CAGATATTG-------CAGAAGCAACATCAACAGCAG-CAACATC---------AGCAACAA-----C
droEug1	scf7180000409711:4995085-4995281 +		AAAAAATTAT---------AAATAACAAACTACTAC------AGCC---AAGAGA--CAGAGC--------------------------------------------------TACG-----------------------------------------------------AAAA---GCGT------TA---------------------------------------------------------------------------------AA----------------------------------------------------------------------------------------AACTAT-G----------------------------------------------------------------------------------------------TTGCTAGTGTC------------TAAACCCAAAAAAAAAACCAAAAACAAAACAAATTTCAGC---------------------------------------------------------------------------------------------------------------------------------------------------------GC----------------------------------------------CCAATGC----------AG-----------------------------------------CAGCAGCAGCAGTAGCAACATTGG-------CAGCAGCATCAGCAACAACAAGCGGCAGCA------GCAACAGCCG-CTGGG
dm3	chr3L:5265124-5265266 -		AATCAATTTA---------CA--ATCAA------------------------------------------------------------------AC-CTG-CTC----------------------------------------------A--------------------------------------------------------------------------CCATTAGCCATTAAAATT--------------------------------------------G------------------------------------------------------------------------------CGTCAATCAAG--------------------------------------------------------------------------------------------------------------------------------------AGAAAAACC------------------------------------------------------------------T----------------------CGC-----------------------------------------------------------------------C------ATTGCCCGCAGCAACATCGAAGCTAGCCAATT--------T-------------------------------------------------------CAG-----C----------------------CA---ACAGGACCCACAGCAG-GAGCAGG---------AGCAAAAGTC---C
droSim2	x:11981165-11981372 -		AGCAACAACA---------G---------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------AAACCAAAAAAAAAAGAAG-------------------------------------------------CAAC---------------------AATTAAGTT------------AGTTAAACTTTAAGAGAAAAGTT-----------------------------------------------------------------------------------------------------ACAAAAAAATTACAGAAATTA------------------------------------------------------------GTGCTAACTTTAAAGCGAAATTTTTTTGTGGGGCACTTC--------------------CGAGAGAATGTCGCAGTGCAATAATGTTGC-----------------------------------------------------------------------A------ACTGTCGG----------------------------------------------------------------------------------------CAGCAGCAA----------------------CA---AAAGCAACAGCAGCAA-CA-CGTT---------AACAACAG-----C
droSec2	scaffold_138:52247-52431 -		AAACAAAGCT---------AG--------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------TGGACAAATCGATAAAAAT-------------------------------------------------CAACAAAGTACAGTGC------------------------------------------------------------------------------AAAACCAAAA-----------ACAAGCTCTC------------------------A-------------------------GCAGAGTTGGAAAAATTGATATTAAAAAAAA------------AAAAAGAAGAAAACTGAAACGGGAAGAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------TCC----------------------------------------------CTAAAGC----------AA-----------------------------------------CAACAGCGG----------------------CA---GCAACGACAGCGGCAG-CAACGAC---------AGCGGCAG-----C
droYak3	2R:15025501-15025624 +		CAATAAAACT---------ATTAAGC-CATTAGTAAGCCAAAC-----ACGAGTACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGC------------------------------------------------------------------------------CAGAAAACAA---------------------------------------------------------------------------------------------------------------------------ACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG---------TGCAGC-----------------------------------------------A------------------GCA-----ACAGTCACCG---CCGCAGCCG----------------------CA---GCAGCAACAGCAACAG-CAGCAGC---------AGCAACAG-----C
droEre2	scaffold_4759:40250-40415 -		AACTGAGT-----------GATTTATTAACTGGTGC------C--C---AACAAA--CGATAC--------------------------------------C-----------CACG-----------------------------------------------------CGAC---GCGT------TA---------------------------------------------------------------------------------AA----------------------------------------------------------------------------------------AAGTAC-------------------------------------------------------------------------------------------------------------------------------------GAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------TACAGC-------------------------------------AACAACACGCGACTGAAAATAATTCAAGTGCAGAAGAGCATTAGCAACAACAACAATAC----------------------CA---GCGGTACCAGCGGCAA-CAGCAGC---------AGCAGCAA-----C

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TTTTCGGCCC---------A-------------------------CGT-------CA----------------TG---TGC-------------G-CAA-TCTTATCTA-ATTTA-TAAGTAGATAATAAATAA---------------------------------------------------------------TGATAGCTCATCAAAGAGATAAAAAT-------------------------------------------------GAAC-----------------------------TAATTAATTTAGTAACTGAGCTCCAATAAAATCATT-----------------------------------------------------------------------------------------------------ATTAAACAGGCTCATAAACCAT----TTCCAAGCAGATAAAAAT-----------------------TAC---------------------------------------------GCG-------------------------------------------------------------------------------------------------------ACCGAAAAAAAAC----------------------------------------------TTACCTCATTT----------TGTT------------------GCA-----GCACCCAA-----CACCAGCAG----------------------CA---GCAGCATCAGCGGCAG-CATCAGC---------AGCGTCGG-----C	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAG-CATCAGC---------AGCGTCGG-----C	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCAG-CATCAGC---------AGCGTC........	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAAAAAAAC----------------------------------------------TTACCTCATTT----------TGTT------------------GCA-----G...............................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAT-----------------------TAC---------------------------------------------GCG-------------------------------------------------------------------------------------------------------ACCGAAAAAAAAC----------------------------------------------TTACCT.............................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCAG-CATCAGC---------AGCGTCG.......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCAA-----CACCAGCAG----------------------CA---GCA............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TTAGTAACTGAGCTCCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG----------------------CA---GCAGCATCAGCGGCAG-..............................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG----------------------CA---GCAGCATCAGCGGC.................................	21	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAG----------------------CA---GCAGCATC.......................................	18	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------CA---GCAGCATCAGCGGCA................................	18	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCTGCGTCA-------------------------------------------------------------------------------TGCGGAA-CTA-TCTTATCTA-AT--------------------------------------------------------AGATAA---TAACAA-----TAAAAATAATA-------------------------ATCATTGCTCGTAAAGGTTTA-------------------------ATGAAT-----------------------------TAATTAATACAGTCAATGAAATGGAATAAAAACATTATCAATTTAATGAATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGGCTGACTAATGGATAAAACAAAAATTTG-TTTCT----------------------------------------------CTCATTC----------GATT------------------ACA-----GCACCA------------------------------------------------------AACAG-CATCAGC---------AGCAACAG-----C	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TGTGTGATCC---------A-------------------------ATTGCG---TCA----------------T----TGC-------------A-CAA-TCTTATCAATATTTACGAATTGGATATTAAGTAATCATAATATTCATTATATTATTGGCCAT----------AAGAGCGATAA------------------------------------CAATAATC---------------------------------------------GAAT-----------------------------TAATTAACATGATAGCTTAAATCAAATAAAAGCAT--------------------------------------------------------------------------------------------------------------------------------------------A-AAAT-----------------------CACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAC----------------------------------------------TTGCCTCATTT----------TGTT------------------GCA-----GCACCA------------------------------------------------AACACCAGCAG-CAACCGC---------AGCAGCAG-----C	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------------CACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAC----------------------------------------------TTGCCTC............................................................................................................................................	19	1	1.00	1	1	0

droWil2

TTTCTTTTAT---------A-------------------------TTT-------CA----------------GA---TGT-------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTAAAATATTTAATCATCA-----------------------------------------------------------------------------------------AGTAAATTTG------------------------A-TTAATGTAGTTAATG-----------------------------------------------------------------------------------------TAGGTTAAAATAAAATTAATCTAAAGACTAAATTCAAAAATTTTTTTTATCATAATTTCT----------------------CTC---------------------------CATTTTCCATAACATAGAA------------------------------------------------------TTATCCTATT--------TTA----------AAAT------------------GAA-----ATATTTGTTA------AGA-------------------------CA---AAAAAATAATTGGCTG-CAAGATT-CGCCAAATAGTGAAAA-----C	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

AACACCAACA---------AAAACACTAACAACAGC------A--C---CAAAAA--CAACAG--------------------------------------------------CACC-----------------------------------------------------AA-------------------AAACATCG-----------------------------------------------------------------------AA----------------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------------------------------------TAACGCCAACAAAAACACCGACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------ACA-----GAACCTAGAA---CAACAACAA----------------------CA---CCAACAACAACAGCAA-CATCAAC---------AACAACAA-----A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CAACAACAA----------------------CA---CCAACAACAAC....................................	24	5	0.20	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA----------------------CA---CCAACAACAA.....................................	20	17	0.06	1	0	0	1	0	0	0	0	0	0	0

droPer2

ACCAATTAAT---------G-------------------------CCG---CATCAA------------------------------------------------------------------------------------------------------------------------CAACAA-----CAAAAACAG-----------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------AGTAGCCGCCCACAACAGCCAT----AGCCTGTAACACAAATAC-----------------------CACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAA----------------------------------------------GCACCCCATCA----------AGCT------------------GCA-----GCATCGTCTA------CAG---------CCATAATAACAT----CA---ACTACAACATCGTCTG-TGGCTGC---------AGCCCCGG-----C	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCTG-TGG...........................	25	5	7.20	36	0	36	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCTG-T.............................	23	5	4.40	22	0	18	3	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCTG-TGGC..........................	26	5	4.20	21	7	14	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCTG-TG............................	24	5	3.00	15	2	13	0	0	0	0
.....................................................TCAA------------------------------------------------------------------------------------------------------------------------CAACAA-----CAAAAACAG-----------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------AGTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCTG-..............................	22	5	2.80	14	3	9	0	1	0	1
.....................................................TCAA------------------------------------------------------------------------------------------------------------------------CAACAA-----CAAAAACAG-----------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------AGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCT................................	21	5	1.40	7	4	2	1	0	0	0
.....................................................TCAA------------------------------------------------------------------------------------------------------------------------CAACAA-----CAAAAACAG-----------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------AGTAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCTG-TGGCTG........................	28	5	0.60	3	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT----CA---ACTACAACATCGTCTG-TGGC..........................	25	5	0.60	3	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------GCA-----GCATCGTCTA------CAG---------CCAT................................................................	21	6	0.50	3	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCTG-TGA...........................	25	5	0.40	2	0	2	0	0	0	0
.....................................................TCAA------------------------------------------------------------------------------------------------------------------------CAACAA-----CAAAAACAG-----------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------AGTAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCTG-G.............................	23	5	0.20	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT----CA---ACTACAACATCGTCTG-TGG...........................	24	5	0.20	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACTACAACATCGTCTG-T.............................	18	5	0.20	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCTG-TGT...........................	25	5	0.20	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCTG-TGGCTGG---------..............	29	5	0.20	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----CA---ACTACAACATCGTCTG-TGAAA.........................	27	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----CA---ACTACAACATCGTCTG-TGGC..........................	23	5	0.20	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT----CA---ACTACAACATCGTCTG-T.............................	22	5	0.20	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT----CA---ACTACAACATCGTCTG-..............................	21	5	0.20	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------GCA-----GCATCGTCTA------CAG---------CCA.................................................................	20	6	0.17	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----GCATCGTCTA------CAG---------CCATA...............................................................	19	6	0.17	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTCTA------CAG---------CCATAATA............................................................	19	6	0.17	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------GCA-----GCATCGTCTA------CAG---------CCATA...............................................................	22	6	0.17	1	0	1	0	0	0	0

droAna3

AATTTTAAAA---------T---------------------------------------------------------------------------------------------TA-AAAGGA-AAAA------------------------------------------------------------TAAAAAA---------------------------------------------------TAATAATATAAAAAGTAAAAATTGT--AAAT-----------------------------TACTTCATTTAGTTA---------------------------------------------------------------------------------------------CTTTGCCCCACAGTAAC---------------------TAGC---------------------------------------------------------AG-------------------------------------------------------------------------------------------------CAGCCAAATGCTAATAAAATAATAAATC--------------------------------------------G-------------------------------------------------------------------------------------------------AA---TGGCAA-------------------------CA---GCAGCAGCAGCAGCGG-CAGCAGC---------AGCAATAG-C---A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------CA---GCAGCAGCAGCAGCGG-CA............................	21	5	0.20	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------------CA---GCAGCAGCAGCAGCGG-C.............................	21	5	0.20	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCGG-CAGCAGC---------AGC...........	26	13	0.08	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCGG-CAGCAGC---------AGC...........	24	15	0.07	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCGG-CAGCAGC---------AGC...........	22	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCGG-CAGCA.........................	20	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCGG-CAGCAGC---------A.............	24	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAGCAGCAGCAGCGG-CAGCA.........................	22	20	0.05	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCGG-CAGCAGC---------AGC...........	19	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCGG-CAGCAGC---------A.............	22	20	0.05	1	0	0	0	0	0	1

droBip1

ATAAAATCT-------------------------------------------------------------------------------TTCTAAAA-TTG-TCT----------------------------------------------T----------C----------AA---GTGT------ATA-AAACATTG-----------------------------------------------------------------------TA------------------------------------------------------------------------TATTTTATATATAGAAATACACAATTATACAAATCTACATTAAGCTG----------------------ACCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCTCG----------------------------------------------AGC----------GGTT------------------ATA-----GCAACTGAGA---CGTTGGCAG----------------------CG---ACAGCGACTGCGGCAG-AAGCAAA---------AGCAGCAG-----C	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATAAAAAATG---------AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTATAAAAT-------------------------------------------------CATTAAAGTAGAGTTTCCAATAATAA-----------------------------------------------------------------------------------------ACTAACTCTT------------------------A-AAGTTACA--------------------------------------------------------------------------------------------GTTTTAATTCCAATTCAAAATTTTATAAATATATAATTAAAAAACAAACTTAATCAAAAGTAGA----------------------C-----------------------------AATGTTCCATAAACAATAATTACAACCAAATAAAAAC-TCCCCTA---------AA----------------------------------AAGCAACAGCAATGAGC--------------------------------------------AG---------CAATAATGGCAATGACCA---G--GAGCCAAGAGCAA-CGCCAGC---------AGCAGCAG-----C	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTATCAAAGAAATATCAGTGATT------CA-----GTGAATT--CTG---AATATGTGACATCAGTGATTTTA-AAGTTCAAAACTTCGTC------------------------------------------------------------------------------AAAA---ACGT------TAAAAAA---------------------------------------------------CATCATTTTAAAGTTC----------------------------------------------------------------------------------------------------------------------------------------------------AAAAATTCGT-----------------------------------------------------------------------------------CAAAA-------------------------------------------------------------------------------------------------------------------------AAAAATAAATC--------------------------------------ATCTGTGAACGGCATTGGCATC--------------------------------------------------------------------A-----GCAACAAC-----AATTAGCAG----------------------CG---GCGGCATCAACGGCAG-AATTATC---------GGCATCAG-----C	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAGAGAGAA---------A-------------------------ACG---GAATAA----------------T-AAACGCAGAATCCTGTCGAAC-CGG-TTT----------------------------------------------A----------TATAAATAGATAA---GCGC------ATAAAAACAACG-------------------------TTCATTACG---------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------AAGAATGTGC-----------------------------------------------------------------------------------CCTAAAACGATG-------------------------------------------------------------------------------------------------CAACCAAGTGCCTAAG-------------------------------------------TTTT-TTGTTCGCG----------------------------------------------AGG----------AG-----------------------------------------CAGCAGCAT----------------------CA---GCAGCATCAGCAGCAG-CAGCAGC---------AGCAACAG-----C	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AATTTTTGCC---------C--------------------------------------------------------------------------------------------------------------------------------------------AT----------AAAAGCGAGAAAGTTCAAGAAA---------------------------------------------------CAACAA------------------------------------------------------------CTTGAATACC----------------------------------------------------------------------------------------------------AGCAGCGACAGTAGAAGAAGGTTTAAATGAAGTCATAGACCAAAATCTTAGAAGCAG------------CTAAAACAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTG----------------------------------------------------------------------------------------CAGCAG---------CAACAAACG-------CAGCAGTACCTACTGCAGCAG-CAGCAGC---------AACATCAA-----C	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAATAAAACT---------ATTAAGC-CATTAGTAAGCCAAAC-----ACGAGTACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGC------------------------------------------------------------------------------CAGAAAACAA---------------------------------------------------------------------------------------------------------------------------ACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG---------TGCAGC--------------------------------------------------------------------A-----GCAACAGTCA---CCGCTG-------------------------CA---GCAGCAGCAGCAGCAG-CAACAGC--------AAGCGCAGG-----A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAATGAATTA---------AAAAAACATTCA-----ATTAATT--T---CATATAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAC------------------------------------------------------------------------------AATTAAACAAATCAGA-----ACTT----TCCTATTAAAATGTATTTATTTGTCCCACAGCAAACGCAGCTGA--------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---------TTCAGC--------------------------------------------------------------------A-----G---------------CAG---------CAGATATTG-------CAGAAGCAACATCAACAGCAG-CAACATC---------AGCAACAA-----C	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAAAAATTAT---------AAATAACAAACTACTAC------AGCC---AAGAGA--CAGAGC--------------------------------------------------TACG-----------------------------------------------------AAAA---GCGT------TA---------------------------------------------------------------------------------AA----------------------------------------------------------------------------------------AACTAT-G----------------------------------------------------------------------------------------------TTGCTAGTGTC------------TAAACCCAAAAAAAAAACCAAAAACAAAACAAATTTCAGC---------------------------------------------------------------------------------------------------------------------------------------------------------GC----------------------------------------------CCAATGC----------AG-----------------------------------------CAGCAGCAGCAGTAGCAACATTGG-------CAGCAGCATCAGCAACAACAAGCGGCAGCA------GCAACAGCCG-CTGGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

AATCAATTTA---------CA--ATCAA------------------------------------------------------------------AC-CTG-CTC----------------------------------------------A--------------------------------------------------------------------------CCATTAGCCATTAAAATT--------------------------------------------G------------------------------------------------------------------------------CGTCAATCAAG--------------------------------------------------------------------------------------------------------------------------------------AGAAAAACC------------------------------------------------------------------T----------------------CGC-----------------------------------------------------------------------C------ATTGCCCGCAGCAACATCGAAGCTAGCCAATT--------T-------------------------------------------------------CAG-----C----------------------CA---ACAGGACCCACAGCAG-GAGCAGG---------AGCAAAAGTC---C	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...CAATTTA---------CA--ATCAA------------------------------------------------------------------AC-CTG-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTAGCCAATT--------T-------------------------------------------------------CAG-----C----------------------CA---ACA............................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATT--------T-------------------------------------------------------CAG-----C----------------------CA---ACAGGACCC......................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGCAACAACA---------G---------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------AAACCAAAAAAAAAAGAAG-------------------------------------------------CAAC---------------------AATTAAGTT------------AGTTAAACTTTAAGAGAAAAGTT-----------------------------------------------------------------------------------------------------ACAAAAAAATTACAGAAATTA------------------------------------------------------------GTGCTAACTTTAAAGCGAAATTTTTTTGTGGGGCACTTC--------------------CGAGAGAATGTCGCAGTGCAATAATGTTGC-----------------------------------------------------------------------A------ACTGTCGG----------------------------------------------------------------------------------------CAGCAGCAA----------------------CA---AAAGCAACAGCAGCAA-CA-CGTT---------AACAACAG-----C	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTC--------------------CGAGAGAATGTCGCAGTGC............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGTTGC-----------------------------------------------------------------------A------ACTGTCGG----------------------------------------------------------------------------------------CAGCAGC............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------------------CGAGAGAATGTCGCAGTGCAATAA.......................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------A------ACTGTCGG----------------------------------------------------------------------------------------CAGCAGCAA----------------------CA---AAAGC..........................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAATAATGTTGC-----------------------------------------------------------------------A------ACTGTCGG----------------------------------------------------------------------------------------CAGC...............................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTAAAGCGAAATTTTTTTGTGGG..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAATTA------------------------------------------------------------GTGCTAACTTTAAAGCGA........................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTTGC-----------------------------------------------------------------------A------ACTGTCGG----------------------------------------------------------------------------------------CAGC...............................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-----------------------------------------------------------------------A------ACTGTCGG----------------------------------------------------------------------------------------CAGCAGCAA----------------------CA---AAAG...........................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-----------------------------------------------------------------------A------ACTGTCGG----------------------------------------------------------------------------------------CAGCAGC............................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTTTTTGTGGGGCAC......................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTTGC-----------------------------------------------------------------------A------ACTGTCGG----------------------------------------------------------------------------------------...................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-----------------------------------------------------------------------A------ACTGTCGG----------------------------------------------------------------------------------------CAGCAGC............................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTGGGGCACTTC--------------------CGAGAGAA.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-----------------------------------------------------------------------A------ACTGTCGG----------------------------------------------------------------------------------------CAGCAGCAA----------------------CA---AAAG...........................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TAAGTT------------AGTTAAACTTTAAGAGAAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTCGG----------------------------------------------------------------------------------------CAGCAGCAA----------------------CA---G..............................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AAACAAAGCT---------AG--------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------TGGACAAATCGATAAAAAT-------------------------------------------------CAACAAAGTACAGTGC------------------------------------------------------------------------------AAAACCAAAA-----------ACAAGCTCTC------------------------A-------------------------GCAGAGTTGGAAAAATTGATATTAAAAAAAA------------AAAAAGAAGAAAACTGAAACGGGAAGAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------TCC----------------------------------------------CTAAAGC----------AA-----------------------------------------CAACAGCGG----------------------CA---GCAACGACAGCGGCAG-CAACGAC---------AGCGGCAG-----C	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

CAATAAAACT---------ATTAAGC-CATTAGTAAGCCAAAC-----ACGAGTACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGC------------------------------------------------------------------------------CAGAAAACAA---------------------------------------------------------------------------------------------------------------------------ACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG---------TGCAGC-----------------------------------------------A------------------GCA-----ACAGTCACCG---CCGCAGCCG----------------------CA---GCAGCAACAGCAACAG-CAGCAGC---------AGCAACAG-----C	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCG----------------------CA---GCAGCAACAGCAACAG-CA............................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCG----------------------CA---GCAGCAACAGCA...................................	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAG-CAGCAGC---------A.............	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAG-CAGCAGC---------AGCA..........	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAG-CAGCAGC---------..............	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG-CAGCAGC---------AGCAACAG-----C	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAG-CAGCAGC---------AGCAACA.......	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AACTGAGT-----------GATTTATTAACTGGTGC------C--C---AACAAA--CGATAC--------------------------------------C-----------CACG-----------------------------------------------------CGAC---GCGT------TA---------------------------------------------------------------------------------AA----------------------------------------------------------------------------------------AAGTAC-------------------------------------------------------------------------------------------------------------------------------------GAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------TACAGC-------------------------------------AACAACACGCGACTGAAAATAATTCAAGTGCAGAAGAGCATTAGCAACAACAACAATAC----------------------CA---GCGGTACCAGCGGCAA-CAGCAGC---------AGCAGCAA-----C	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

-9.7	-9.5	-9.4	-9.4

dvi_3999

scaffold_12855:5374907-5375057 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads