ID:

dvi_3817

 Coordinate:

scaffold_12855:3964963-3965113 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.2 -5.1 -4.9 -4.8

Flybase annnotation

exon [dvir_GLEANR_10280:6]; CDS [Dvir\CtBP-cds]; intron [Dvir\CtBP-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+
mature
star
  1. dvi_3817  scaffold_12855:3964971-3964991 -
  2. scaffold_12875:17931021-17931041 +
  3. scaffold_12970:10171799-10171819 +
  4. scaffold_13042:544424-544444 -
  5. scaffold_13049:5290464-5290484 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGTCGCCCCAAATTGGTGGATTGCCGCTCGGAATTGTGAGTAGCCAATCGGTAGGTACCCCCCTCGCCCACCAGCAACAGTGAGTGTTGTATGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTTGTGTGTGCGCGCGCGAAATGTGTGTGGTAATCCAATGTGTGTGCCTGTGCGTGCGTGTATGTGTGTGTGCGTGTGTGTATGTGTGTGGTCTAGCTTATGTTATTGTTGTTTCATGTTGTTGTTGTTGT
************************************************************************************************************************************************((................(((((......))))).............))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 V047
embryo
 SRR060686
Argx9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060656
9x160_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060681
Argx9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 V053
head
 SRR060684
140x9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060673
9_ovaries_total
 SRR060676
9xArg_ovaries_total
.................GGATTGCCGCTCGGAATT........................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ATTGCCGCTCGGAATTGTGA.................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............TTGGTGGATTGCCGCTCGGAAT......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CGGAATTGTGAGTAGCCAAT........................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ATTGGTGGATTGCCGCTCGGA........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................GTGAGTAGCCAATCGGTAGGT................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ATTGCCGCTCGGAATTGTG..................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TTGCCGCTCGGAATTGTGA.................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CAAATTGGTGGATTGCCGCT............................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GATTGCCGCTCGGAATTGTGAGTAGCCA............................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CGGAATTGTGAGTAGCCAATC.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TGAGTAGCCAATCGGTAGGTA.................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTGTGGTAATCCAATGTGTGT...................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TGCGCGCGCGAGATGTGTGTG...................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGTGTGTGCGCGCGCGAGATG............................................................................................................ 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCTATAGCTTATGTTATGGTT..................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................ATGTGTGTGCCTGTGCGT............................................................................ 18 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CGTGCGTGTATGTGTGTGTGC.......................................................... 21 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TGTGTGCGTGTGTGTTGTGT............................................................................................................................ 20 0 12 0.17 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0
.......................................................................................................................................................................CTGTGCGTGCGTGTATGCG................................................................. 19 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GTGTGTGCCTGTGCGTGCGTT....................................................................... 21 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................TGTGCGTGCGTGTATGTG................................................................. 18 0 14 0.14 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
.............................................................................................................TGTGCGTGTTTGTTGTGTGTG......................................................................................................................... 21 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TGTGCGTGCGTGTATGTGTG............................................................... 20 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................TGTTGTATGTGTGTGTGT..................................................................................................................................................... 18 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGTGCGTGTGTGTTGTGT............................................................................................................................ 18 0 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................GCTCGAAAGTGTGGGTAGC............................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGTGTGCGTGTGTGTATGTG............................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................TGTGTGTGTGCGTGTGTGT................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................CGTGCGTGTATGTGTGTG............................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................TGCGTGCGTGTATGTGTG............................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

ACAGCGGGGTTTAACCACCTAACGGCGAGCCTTAACACTCATCGGTTAGCCATCCATGGGGGGAGCGGGTGGTCGTTGTCACTCACAACATACACACACACACACACACACACGCACACACAACACACACGCGCGCGCTTTACACACACCATTAGGTTACACACACGGACACGCACGCACATACACACACACGCACACACATACACACACCAGATCGAATACAATAACAACAAAGTACAACAACAACAACA
**********************************************************((................(((((......))))).............))************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060673
9_ovaries_total
 SRR060681
Argx9_testes_total
 V053
head
 SRR060669
160x9_females_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 V047
embryo
 SRR060674
9x140_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
...................................................................................................................................................................................................CACACATACACACACCAGAT.................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................GGTTAGCCATCCATGGGGGGA........................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CGCGCTTTACACACACCATTA................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CAAAGTACAACAACAACAA.. 19 0 4 0.50 2 1 0 0 0 1 0 0 0 0 0
..........................................................GGGGGAGCGGTAGGTCGTT.............................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
......................................................CTAGGGGGGAGCGGGTAGTC................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0
...........................................................GGGGAGCGGGTGGTCGCGGAC........................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................ACACGCACGCACATACACACA.............................................................. 21 0 10 0.10 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................ACACACGCACACACAACACA............................................................................................................................ 20 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0
..............................................................GAACGGGTGGTCAATGTCAC......................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................CACGCACGCACATACACACA.............................................................. 20 0 17 0.06 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................ACACACACACACACACACGC........................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACACACACACGCACACACATAC............................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ACACACACGCACACACATACA.............................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:3964913-3965163 - dvi_3817 TGTCGCCC-----CA-----AATTGGTG--GA--TTGCCGCTCGGAATTGTGAGTAGCCAATCGGTAGGTACCCCCCTCGCCCACCAG-C----------AAC--------------------------------------------------------------AGTGAGTGTT---------------GTATGTGTGTGTGTGTG-------------------------------------------------------------TGTG--------------------TGT--------------------------------------GCGTGTGTGT--TGTGTGTGCGC--------GCGCGAAATGTGTGTGGTAAT-------------------CCAAT--------------------------------------------------------G--TG--TGTGCCTGTGC----GTGCGTGT-ATG-TGTGTGTGCG--TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTATGTGT----------------GTGGT-CTA--------------------GC-----------TTA---TGTTATTG------T---T----------------------------------GTTTCA-TGTT-----GTTGTTGTTGT
droMoj3 scaffold_6540:8271863-8272131 - TGTCGCCG-----CA-----AGTTGGTG--GA--TTGCCGCTCGGGATTGTGAGTAGCCAATCGGTAGGTACCAC----------CAGCC----------AAC--------------------------------------------------------------AGTGAGTGTT---------------G-----------------------------------------------------------------------------TGTG--CGTGCGTGTGCGTGTGTGTGT--------------------------------------GCGTGTG---------------C-------------------------------AAAAAAAGA----TAGATAAGT------ACAAACAACAAAATTAATAGAAAACCCATTGAAATACTTAAAATTGTTGTT--TG----TGCCCCCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTGTAAGT--------G--------------TGTGTGTGTGTATGTGT----------------GTGGT-CTA--------------------GC-----------TTG-----------T---------G----------------------TTGTTGTTGTT-GTTTCA-TGTT-----GTTGTTGATGT
droGri2 scaffold_14906:6586038-6586257 - TGTCGCCG-----CA-----AATTGGTG--GA--TTGCCGCTCGGAATTGTGAGTAGCCAATCGGTAGGTACTACAT------A-CATGCACCACTCAGT---GTTCTTCTGTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTGTGTGCGCAATGTGT-----------------------------------------------------------GTGCAAGT----------------------------------------------------------------------------------------CCAAGT-T------------TGTGGCCAATAC----TGTGGT-AA-------TCAAAGCTACTGTGTGTGTGTATGTGT----------------GTGGT-CTA--------------------GC-----------TTG-----TTATTG------T---T----------------------------------GTTTCT-TGTTGTTGATATGTTGATGT
droWil2 scf2_1100000004902:11587991-11588249 + TGTCGCCG-----CA-----AGTTGGTG--GA--TTGCCGCTCGGAATTGTGAGTAGCCAATCGGTAGGTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG--TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGTTGTGTTGTGTTTGTGTGTGCGCTA-GTGT-----------------------------------------------------------TTGCCAGTTATTCATCTCCTTTCCCCCGCCCCC-CCACATATACCCGAAATATAACCGATCTCTAGTGAGTAATCTAGATATCCGGTTAT-------------------------------TCAGTGC----TGTGGTTA-------GTC---------GAGTATGTGTATGCGT--GCA-----------GTGGG-CCA--------------------GC-----------ATA-----------T---------T----------------------TAGTTTA--------------TG-----TTTATTGTTAT
dp5 2:11317563-11317858 - TGTCGCCG-----CA-----AGTTGGTG--GA--CTGCCGCTCGGAATTGTGAGTAGCCAATCGGTAGGTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG--TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGTTGTCTTGTGTTTGTGTGTGCGCTATGTGTGTCCTAAGTTTTGCCAGTTACCAGTTACCAGTTACGATCTTACCTCACCAGTTGCCACTTTGCCACTTAGCCACTTCCATTCCCACTCCCACTCCAC-------------------------------------------------CATGCAATGCCATGTCGTGGAGCCGCGCAAGCGCCA---------TGT--------G--------------TGCGTGTGCGTGTGTGT----------------GTGGGATTA--------------------GA-----------TAG---TTTGTTTGT---------T----------------------------------GT--GT-TGTT-----GTTGCTGTTGC
droPer2 scaffold_15:1231909-1232082 - CGCCAGCA-----GCAGGGGCAGTAGCACAGGTATT------------------------------------GCTCGTATGTGGCCG-----------------TCCT---------------------------------------------------------GCTCTGTCTC-----------------------GTGTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGTT---CTAG--TGTGTG--ATTTTAC--------------------------------------------------------GTGTG----TGTGTGTGT----GTGT-----GTG-TGTGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGTGTGA----------------GTGTGCTTA--------------------AC-----------TTG---TTTTTTT--------------------------------------------TTTTTTCAAAATT-----TCTG--TTTGT
droAna3 scaffold_13337:2680571-2680716 + GTGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----GTGCGTGTGTGTGTGCGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GCGTGTGTGTG-TGCGTGTGTGT-------------------------------------GTGCGTGTGTG----T--------------------------------------------------------GTGCG----TGTGCGTGT----GTGTGTGC-GTGT-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT--GTGTGTTTGTGTGTGTGTGTGT-------------------------------------------------GT--------------------------------------------G-TGTGTG-TGTT-----TGTGTGTGTGT
droBip1 scf7180000395508:3063-3156 + AAAG-T-------------------------------------------------------------------------------------------------GTTTTTTTGTAAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGT-TTT-TGTTTTTGTA--ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTTTGTTT----------------TTGTT-GTA--------------------AA-----------TAT---TGTTGT------------------------------------------TGTT-ATTGTA-TTTT-----GTTGTTGTTGT
droKik1 scf7180000302634:820678-820887 + TGTCGCCCCACCACCAGGT-GGGTGGTG--GA--ATGCCTCTTGGAATTGTGAGTAGCCAATCGGTAGGTAGCCCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGTTGTCTTGTGTTTGTGTGTGCG-------T-----------------------------------------------------------TTGCCAAC-----------------------------------------------------------------------------------------------CTGACGCCACG--AGCGGCATATACTCTCTGTGGT-AAACGTGTGTT---------GTGT----------GT------------------G--------------------------------------------------TTGT---------TGTGTTGTGTGTGGCTCCCCAGTTAGTCCG--------------TG-----TTCGTTGCTGT
droFic1 scf7180000454072:2250644-2250797 - ACAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-----TACTGTGCGGATGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GTGTGTGTGTGATGTGCAAGTGC---------------------------------------GTGTGTTTG----T-----------------------------------------------GAATGTTCTG--TG----TGCTTTTGT----GTGCGTGCCACG-TGTGTGCACG--AGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAGTGTGT----------------ATGAA-TCA--------------------AT-----------TTG-----------G---------C----------------------------------GC------TCT-----GCTTTTGTTTT
droEle1 scf7180000490546:1026711-1026851 - GTGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----GTGTGTGTGTGTGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GTGTGTGTGTG-TGTGTGTGTGT-------------------------------------GTGTGTGTGTG----T--------------------------------------------------------GTGTG----TGTGTGTGT----GTGTGTGT-GTGT-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT--GTGTGTGTGTGTGTGTGTATGT---------------------------------------------------------------------------------------GTGTG--------------TG--TGTGT--GAGTGTT
droRho1 scf7180000779333:490371-490606 - GGCCGCCG-----CA-----TATTGGGC-----------------------------------------------------------------------------------------CACGTTTAACCCATTACCGCCAGCGGTGGGTGGAAAATGGCCCAGCTT------------------------GCCGTGCGGATGCATCAG-------------------------------------------------------------GGAATG------------------C--------------------------------GGATGCGGATGCGA-------ATGCGGATGT-------------------------------GGGTGTGGA----TGGCCATGC------------------------------------------------------------GGATGCGGCTGTGG----GTG-GT---GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGG--GCAGGTGGCAG-----------------------------AGCAGCGGTGGGTGGCTCAAAGCTCTCGCCATTA------T---T------------------------GTTATTGTT-GTTGT--GAGC-----GGGACTGCTGC
droBia1 scf7180000301141:1088-1250 + GTGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----GTGTGTGTGTGTGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GTGTGTGTGTG-TGTGTGTGTGT-------------------------------------GTGTGTGTGTG----T--------------------------------------------------------GTGTG----TGTGTGTGT----GTGTGTGT-GTGT-GTGTGTGCGCGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGT----------------GTGTG-CGT--------------------GT-----------TTG-----------TGTGCGTGTGT----------------------------------GTGTGC-GTGT-----GTGTGTGTGGC
droTak1 scf7180000415653:12359-12461 - TGTCGCCC-----CA-----GGTCGGTG--GA--TTGCCGCTTGGAATTGTGAGTAGCCAATCGGTAGGTAGTCCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAAAAAAACCCCTCTGTTGTCTTGTGTTTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT
droEug1 scf7180000409631:252393-252555 + GTGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----GTGTGTGTGTGTGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GTGTGTGTGTG-TGTGTGTGTGT-------------------------------------GTGTGTGTGTG----T--------------------------------------------------------GTGTG----TGTGTGTGTGTGTGTGTGTGT-GTG---TGTGTGTG--TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGT----------------GTGTC-TTC--------------------GA-----------CTC---GCCTAC------------------------------------------TCTT-ATTTTACCGCC-----TTTGCCCTTGT
dm3 chr3R:627808-627968 - GTGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----TCGTGTGCGTGTGTGTGTG-------------------------------------------------------------CGTGTG------------------T----------------------------------------GTGTGTGTGTG-TGTGTGCGTGT-------------------------------------GCGTGTGTGTG----T--------------------------------------------------------GTGTG----TGTGTGTGT----GTGTGTGT-GTGT-G--TGTGTG--TGTGTGTGTGTTTGTGGTCTATTGCTAATATAACAATAGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--TCA-CATT-----TCTGTCACCGT
droSim2 2l:13217959-13218097 + GTAACCAG-----TT--------------------------------TTCTGCGGC----------------CCCCTTCAGTCACCTG---------------------------------------------TCC----------------------CTACATT---GAT-AT-------AA-----ATGTATACAAGTGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GTGTGTGTG------------------------------------------------------------------TGTGTGT--------------------------------------------------GTGTG----TGTGTGTGT----GTGT-----GTG-----TGTGTG--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGAGTGC----------------GTGGG-C------------------------------------------------------------------------------------------------------------------------T
droSec2 scaffold_2:3870323-3870627 + TCGCCCCA-----CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGCATGTGTGCGTTGCGGTGTTCGGCCATTTTGTGAATGCATTTATCGCACACACACACGGGCAACCGTGCACTGCGTG--TATCTATGTCGTTGTATCTGTGTTTGTATATCATTACTTATCAGATACTTATTATGAGCATACGA-------TATCGTA--TATTTTGGCATGC-----------------TCCTCGGCTTGTGTG--GTTC--T--------------------------------------------------------G--TG--TGCGTTTCTGC----GTGTGTGT-GTG-TGTGTGTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTGT----------------GTGTGCTTGGTAAATATGCAAATGAGCCTGT-----------TTG-----------TTGCCACTACT----------------------------------GTTTGC-CATT-----GTTGTTGTTGC
droYak3 X:1694902-1695043 + TGTATGTG-----AG-----TGTTTGTG--TA--TATGTGGCTGTGGCTGTGGGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGG-------GTGTGGGTGT-------------------------------GTGGGTGTG----TGGGTGTGT------------------------------------------------------------GGGTGTGTGTGTGT----GTGTGTGT-GTGT-G--TGTGTG--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGAGCGC----------------GTGTG-CTT--------------------GA-----------TTG-----------T----------------------------------------------TTAA--------------TTTAATT
droEre2 scaffold_4784:20228138-20228318 + AATTTCGA-GTCGCA-----AAATAGTTCAAGTCAT------------------------------------CTCTCTTACCGGTCG-------------AGC--------------------------------------------------------------AGTGAGTGTAGTGTATGTGTAGTGTATGTACCGGTGTATGTA-------------------------------------------------------------CCGGTG------------------T----------------------------------------A---------------------TGTACCGGTGTAT-----------------GTACCGGTGTATGTA----CCGGT--------------------------------------------------------G--TA--TGTACCGGTGT----ATGTATGT-ATG-TA--TGTATG--TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------TA-----TGTATGTATGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGTCGCCC-----CA-----AATTGGTG--GA--TTGCCGCTCGGAATTGTGAGTAGCCAATCGGTAGGTACCCCCCTCGCCCACCAG-C----------AAC--------------------------------------------------------------AGTGAGTGTT---------------GTATGTGTGTGTGTGTG-------------------------------------------------------------TGTG--------------------TGT--------------------------------------GCGTGTGTGT--TGTGTGTGCGC--------GCGCGAAATGTGTGTGGTAAT-------------------CCAAT--------------------------------------------------------G--TG--TGTGCCTGTGC----GTGCGTGT-ATG-TGTGTGTGCG--TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTATGTGT----------------GTGGT-CTA--------------------GC-----------TTA---TGTTATTG------T---T----------------------------------GTTTCA-TGTT-----GTTGTTGTTGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................G--GA--TTGCCGCTCGGAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000100000000000000000000000000000000000000000000000000000000
...............................A--TTGCCGCTCGGAATTGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
......................TTGGTG--GA--TTGCCGCTCGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000001
..........................................CGGAATTGTGAGTAGCCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
.....................ATTGGTG--GA--TTGCCGCTCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
.................................................GTGAGTAGCCAATCGGTAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
...............................A--TTGCCGCTCGGAATTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
..................................TTGCCGCTCGGAATTGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............CA-----AATTGGTG--GA--TTGCCGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................GA--TTGCCGCTCGGAATTGTGAGTAGCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
..........................................CGGAATTGTGAGTAGCCAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
..................................................TGAGTAGCCAATCGGTAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTAAT-------------------CCAAT--------------------------------------------------------G--TG--TGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------------------------------------------G--TG--TGTGCCTGTGC----GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.201001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----GTGCGTGT-ATG-TGTGTGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.201000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................TG--------------------TGT--------------------------------------GCGTGTGTGT--TGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.172000000000000000000000000000001000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TG--TGTGCCTGTGC----GTGCGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.171000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGC----GTGCGTGT-ATG-TG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18140.142000000000000000000000000200000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGC----GTGCGTGT-ATG-TGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TGTT---------------GTATGTGTGTGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18160.061000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................TGT--------------------------------------GCGTGTGTGT--TGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18180.061000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCG--TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTATGTG.................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................TG-------------------------------------------------------------TGTG--------------------TGT--------------------------------------GCGTGTGTGT--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----GTGCGTGT-ATG-TGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC----GTGCGTGT-ATG-TGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000100
droMoj3
TGTCGCCG-----CA-----AGTTGGTG--GA--TTGCCGCTCGGGATTGTGAGTAGCCAATCGGTAGGTACCAC----------CAGCC----------AAC--------------------------------------------------------------AGTGAGTGTT---------------G-----------------------------------------------------------------------------TGTG--CGTGCGTGTGCGTGTGTGTGT--------------------------------------GCGTGTG---------------C-------------------------------AAAAAAAGA----TAGATAAGT------ACAAACAACAAAATTAATAGAAAACCCATTGAAATACTTAAAATTGTTGTT--TG----TGCCCCCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTGTAAGT--------G--------------TGTGTGTGTGTATGTGT----------------GTGGT-CTA--------------------GC-----------TTG-----------T---------G----------------------TTGTTGTTGTT-GTTTCA-TGTT-----GTTGTTGATGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................ATTGTGAGTAGCCAATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002020000
................................................................................................................................................................................................................................................................................................TGTGTGT--------------------------------------GCGTGTG---------------C-------------------------------AAAAAAAGA----TAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.....................................................................................................................................................................................................................................................................................................GT--------------------------------------GCGTGTG---------------C-------------------------------AAAAAAAGA----T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.........................................................................................C----------AAC--------------------------------------------------------------AGTGAGTGTT---------------G-----------------------------------------------------------------------------TGTG--CG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GTTTCA-TGTT-----GTTGTTGATT.2120.501000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGTAAGT--------G--------------TGTGTGTC.........................................................................................................................................................20200.051000001
droGri2
TGTCGCCG-----CA-----AATTGGTG--GA--TTGCCGCTCGGAATTGTGAGTAGCCAATCGGTAGGTACTACAT------A-CATGCACCACTCAGT---GTTCTTCTGTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTGTGTGCGCAATGTGT-----------------------------------------------------------GTGCAAGT----------------------------------------------------------------------------------------CCAAGT-T------------TGTGGCCAATAC----TGTGGT-AA-------TCAAAGCTACTGTGTGTGTGTATGTGT----------------GTGGT-CTA--------------------GC-----------TTG-----TTATTG------T---T----------------------------------GTTTCT-TGTTGTTGATATGTTGATGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................TCTTCTGTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTGTGTGCGCAAT..............................................................................................................................................................................................................................................................................................................................................................................................2611.00110
droWil2
TGTCGCCG-----CA-----AGTTGGTG--GA--TTGCCGCTCGGAATTGTGAGTAGCCAATCGGTAGGTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG--TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGTTGTGTTGTGTTTGTGTGTGCGCTA-GTGT-----------------------------------------------------------TTGCCAGTTATTCATCTCCTTTCCCCCGCCCCC-CCACATATACCCGAAATATAACCGATCTCTAGTGAGTAATCTAGATATCCGGTTAT-------------------------------TCAGTGC----TGTGGTTA-------GTC---------GAGTATGTGTATGCGT--GCA-----------GTGGG-CCA--------------------GC-----------ATA-----------T---------T----------------------TAGTTTA--------------TG-----TTTATTGTTATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGTGTGCGCTA-GTGT-----------------------------------------------------------TTG............................................................................................................................................................................................................................................................................................................................2511.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------TCAGTGC----TGTGGTTA-------GTC---------GA..............................................................................................................................................................2111.00100010
........................GGTG--GA--TTGCCGCTCGGAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
..............A-----AGTTGGTG--GA--TTGCCGCTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
......................................CGCTCGGAATTGTGAGTAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.......................TGGTG--GA--TTGCCGCTCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCGCTA-GTGT-----------------------------------------------------------TTGCC..........................................................................................................................................................................................................................................................................................................................2111.00100010
dp5
TGTCGCCG-----CA-----AGTTGGTG--GA--CTGCCGCTCGGAATTGTGAGTAGCCAATCGGTAGGTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG--TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGTTGTCTTGTGTTTGTGTGTGCGCTATGTGTGTCCTAAGTTTTGCCAGTTACCAGTTACCAGTTACGATCTTACCTCACCAGTTGCCACTTTGCCACTTAGCCACTTCCATTCCCACTCCCACTCCAC-------------------------------------------------CATGCAATGCCATGTCGTGGAGCCGCGCAAGCGCCA---------TGT--------G--------------TGCGTGTGCGTGTGTGT----------------GTGGGATTA--------------------GA-----------TAG---TTTGTTTGT---------T----------------------------------GT--GT-TGTT-----GTTGCTGTTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................TCGGAATTGTGAGTAGCCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......G-----CA-----AGTTGGTG--GA--CTGCCGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................GA--CTGCCGCTCGGAATTGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG---TTTGTTTGT---------T----------------------------------GT--GT-TGTT-----...........2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCCTAAGTTTTGCCAG.........................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGTTTGTGTGTGCGC.................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......CG-----CA-----AGTTGGTG--GA--CTGCCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...CGCCG-----CA-----AGTTGGTG--GA--CTGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTA--------------------GA-----------TAG---TTTGTTTGT---------T----------------------------------GT--GT-....................2411.0010000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTGTCTTGTGTTTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCAATGCCATGTCGTGG....................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGTTACGATCTTACCTC............................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCAATGCCATGTCGTGGA...................................................................................................................................................................................................................2111.0010100000000
.....................GTTGGTG--GA--CTGCCGCTCGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....................AGTTGGTG--GA--CTGCCGCTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCAGTTACGATCTTACC..............................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................AGTTGGTG--GA--CTGCCGCTCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTTGTGTTTGTGTGTGC...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCGTGGAGCCGCGCAAG.........................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCGCTATGTGTGTCC......................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------T----------------------------------GT--GT-TGTT-----GTTGCTGTT..1950.2010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------GT--GT-TGTT-----GTTGCTGTTC.19160.0610000000010
droPer2
CGCCAGCA-----GCAGGGGCAGTAGCACAGGTATT------------------------------------GCTCGTATGTGGCCG-----------------TCCT---------------------------------------------------------GCTCTGTCTC-----------------------GTGTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGTT---CTAG--TGTGTG--ATTTTAC--------------------------------------------------------GTGTG----TGTGTGTGT----GTGT-----GTG-TGTGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGTGTGA----------------GTGTGCTTA--------------------AC-----------TTG---TTTTTTT--------------------------------------------TTTTTTCAAAATT-----TCTG--TTTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................CCT---------------------------------------------------------GCTCTGTCTC-----------------------GTGTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droAna3
GTGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----GTGCGTGTGTGTGTGCGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GCGTGTGTGTG-TGCGTGTGTGT-------------------------------------GTGCGTGTGTG----T--------------------------------------------------------GTGCG----TGTGCGTGT----GTGTGTGC-GTGT-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT--GTGTGTTTGTGTGTGTGTGTGT-------------------------------------------------GT--------------------------------------------G-TGTGTG-TGTT-----TGTGTGTGTGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG----T--------------------------------------------------------GTGCG----TGTGCGTGT----GTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501000001
.................................................................................................................................................................................................................................................................................................................................................................................................................GTG----T--------------------------------------------------------GTGCG----TGTGCGTGT----GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171100000
................................................................................................................................................................................................................................................................................................................................................................................................................TGTG----T--------------------------------------------------------GTGCG----TGTGCGTGT----GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.171000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCG----TGTGCGTGT----GTGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.141100000
.................................................................................................................................................................................................................................................................................................................................................GTGTGTG-TGCGTGTGTGT-------------------------------------GTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000011
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT----GTGTGTGC-GTGT-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT--G.................................................................................................................................................21200.102000011
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT--GTGTGTTTGTG.......................................................................................................................................19200.102000002
..............................................................................................................................................................................................................................................................................................................................................................GTGTGT-------------------------------------GTGCGTGTGTG----T--------------------------------------------------------GTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000011
..............................................................................................................................................................................................................G-------------------------------------------------------------TGTGTG------------------T----------------------------------------GCGTGTGTGTG-TG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000011
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTGTGTGTGTGT-------------------------------------------------GT--------------------------------------------G-TGTGTG-....................26200.051000001
..................................................................................................................................................................................................GTGTGTGTGCGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
..GTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----GTGCGTGTGTGTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGT-------------------------------------------------GT--------------------------------------------G-TGTGTG-TGTT-----...........21200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTGTGTGTGTGTGTGT-------------------------------------------------...........................................................................22200.051001000
droBip1
AAAG-T-------------------------------------------------------------------------------------------------GTTTTTTTGTAAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGT-TTT-TGTTTTTGTA--ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTTTGTTT----------------TTGTT-GTA--------------------AA-----------TAT---TGTTGT------------------------------------------TGTT-ATTGTA-TTTT-----GTTGTTGTTGTSizeHit CountTotal NormTotal
No Reads
droKik1
TGTCGCCCCACCACCAGGT-GGGTGGTG--GA--ATGCCTCTTGGAATTGTGAGTAGCCAATCGGTAGGTAGCCCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGTTGTCTTGTGTTTGTGTGTGCG-------T-----------------------------------------------------------TTGCCAAC-----------------------------------------------------------------------------------------------CTGACGCCACG--AGCGGCATATACTCTCTGTGGT-AAACGTGTGTT---------GTGT----------GT------------------G--------------------------------------------------TTGT---------TGTGTTGTGTGTGGCTCCCCAGTTAGTCCG--------------TG-----TTCGTTGCTGTSizeHit CountTotal NormTotal
No Reads
droFic1
ACAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-----TACTGTGCGGATGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GTGTGTGTGTGATGTGCAAGTGC---------------------------------------GTGTGTTTG----T-----------------------------------------------GAATGTTCTG--TG----TGCTTTTGT----GTGCGTGCCACG-TGTGTGCACG--AGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAGTGTGT----------------ATGAA-TCA--------------------AT-----------TTG-----------G---------C----------------------------------GC------TCT-----GCTTTTGTTTTSizeHit CountTotal NormTotal
No Reads
droEle1
GTGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----GTGTGTGTGTGTGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GTGTGTGTGTG-TGTGTGTGTGT-------------------------------------GTGTGTGTGTG----T--------------------------------------------------------GTGTG----TGTGTGTGT----GTGTGTGT-GTGT-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT--GTGTGTGTGTGTGTGTGTATGT---------------------------------------------------------------------------------------GTGTG--------------TG--TGTGT--GAGTGTTSizeHit CountTotal NormTotal
No Reads
droRho1
GGCCGCCG-----CA-----TATTGGGC-----------------------------------------------------------------------------------------CACGTTTAACCCATTACCGCCAGCGGTGGGTGGAAAATGGCCCAGCTT------------------------GCCGTGCGGATGCATCAG-------------------------------------------------------------GGAATG------------------C--------------------------------GGATGCGGATGCGA-------ATGCGGATGT-------------------------------GGGTGTGGA----TGGCCATGC------------------------------------------------------------GGATGCGGCTGTGG----GTG-GT---GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGG--GCAGGTGGCAG-----------------------------AGCAGCGGTGGGTGGCTCAAAGCTCTCGCCATTA------T---T------------------------GTTATTGTT-GTTGT--GAGC-----GGGACTGCTGCSizeHit CountTotal NormTotal
No Reads
droBia1
GTGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----GTGTGTGTGTGTGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GTGTGTGTGTG-TGTGTGTGTGT-------------------------------------GTGTGTGTGTG----T--------------------------------------------------------GTGTG----TGTGTGTGT----GTGTGTGT-GTGT-GTGTGTGCGCGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGT----------------GTGTG-CGT--------------------GT-----------TTG-----------TGTGCGTGTGT----------------------------------GTGTGC-GTGT-----GTGTGTGTGGCSizeHit CountTotal NormTotal
No Reads
droTak1
TGTCGCCC-----CA-----GGTCGGTG--GA--TTGCCGCTTGGAATTGTGAGTAGCCAATCGGTAGGTAGTCCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAAAAAAACCCCTCTGTTGTCTTGTGTTTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTSizeHit CountTotal NormTotal
No Reads
droEug1
GTGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----GTGTGTGTGTGTGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GTGTGTGTGTG-TGTGTGTGTGT-------------------------------------GTGTGTGTGTG----T--------------------------------------------------------GTGTG----TGTGTGTGTGTGTGTGTGTGT-GTG---TGTGTGTG--TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGT----------------GTGTC-TTC--------------------GA-----------CTC---GCCTAC------------------------------------------TCTT-ATTTTACCGCC-----TTTGCCCTTGTSizeHit CountTotal NormTotal
No Reads
dm3
GTGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----TCGTGTGCGTGTGTGTGTG-------------------------------------------------------------CGTGTG------------------T----------------------------------------GTGTGTGTGTG-TGTGTGCGTGT-------------------------------------GCGTGTGTGTG----T--------------------------------------------------------GTGTG----TGTGTGTGT----GTGTGTGT-GTGT-G--TGTGTG--TGTGTGTGTGTTTGTGGTCTATTGCTAATATAACAATAGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--TCA-CATT-----TCTGTCACCGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
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..............................................................................................................................................................................................................................................................................................................................................................GCGTGT-------------------------------------GCGTGTGTGTG----T--------------------------------------------------------GT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TGCGTGT-------------------------------------GCGTGTGTGTG----T--------------------------------------------------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................GTGTGCGTGT-------------------------------------GCGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------GCGTGTGTGTG----T--------------------------------------------------------GTGTG----TGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................................................TGCGTGT-------------------------------------GCGTGTGTGTG----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GTGTGTGTG-------------------------------------------------------------CGTGTG------------------T----------------------------------------GTGTGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG----T--------------------------------------------------------GTGTG----TGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------GCGTGTGTGTG----T--------------------------------------------------------GTGTG----TG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................G-TGTGTGCGTGT-------------------------------------GCGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droSim2
GTAACCAG-----TT--------------------------------TTCTGCGGC----------------CCCCTTCAGTCACCTG---------------------------------------------TCC----------------------CTACATT---GAT-AT-------AA-----ATGTATACAAGTGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GTGTGTGTG------------------------------------------------------------------TGTGTGT--------------------------------------------------GTGTG----TGTGTGTGT----GTGT-----GTG-----TGTGTG--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGAGTGC----------------GTGGG-C------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................TGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------GTGTGTGTG------------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000001000000
.....................................................................................................................................................................................................AGTGTGTGTG-------------------------------------------------------------TGTGTG------------------T----------------------------------------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----TGTGTG--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGAGTG.................................................................................................................................................18200.05110000000000000000
droSec2
TCGCCCCA-----CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGCATGTGTGCGTTGCGGTGTTCGGCCATTTTGTGAATGCATTTATCGCACACACACACGGGCAACCGTGCACTGCGTG--TATCTATGTCGTTGTATCTGTGTTTGTATATCATTACTTATCAGATACTTATTATGAGCATACGA-------TATCGTA--TATTTTGGCATGC-----------------TCCTCGGCTTGTGTG--GTTC--T--------------------------------------------------------G--TG--TGCGTTTCTGC----GTGTGTGT-GTG-TGTGTGTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTGT----------------GTGTGCTTGGTAAATATGCAAATGAGCCTGT-----------TTG-----------TTGCCACTACT----------------------------------GTTTGC-CATT-----GTTGTTGTTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGTGTGTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTGT----------------................................................................................................................................18200.0510010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-GTG-TGTGTGTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG.....................................................................................................................................................18200.0510001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTGT----------------GTGTG...........................................................................................................................18200.0510001
droYak3
TGTATGTG-----AG-----TGTTTGTG--TA--TATGTGGCTGTGGCTGTGGGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGG-------GTGTGGGTGT-------------------------------GTGGGTGTG----TGGGTGTGT------------------------------------------------------------GGGTGTGTGTGTGT----GTGTGTGT-GTGT-G--TGTGTG--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGAGCGC----------------GTGTG-CTT--------------------GA-----------TTG-----------T----------------------------------------------TTAA--------------TTTAATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................TGTGGGTGT-------------------------------GTGGGTGTG----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.20404000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TG----TGGGTGTGT------------------------------------------------------------GGGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.20404000000000
...................................................................................................................................................................................................................................................................................................................................................................T-------------------------------GTGGGTGTG----TGGGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.20404000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGTG----TGGGTGTGT------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10201000010000
............................................................................................................................................................................................................................................................................................................................................................GTGGGTGT-------------------------------GTGGGTGTG----T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10201000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-GTGT-G--TGTGTG--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGAGC..................................................................................................................................................23200.10200200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................G----TGGGTGTGT------------------------------------------------------------GGGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10201000010000
...............................................................................................................................................................................................................................................................................................................................................................GGTGT-------------------------------GTGGGTGTG----TGGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.06101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GGTGTG----TGGGTGTGT------------------------------------------------------------GGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.06101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGTG----TGGGTGTGT------------------------------------------------------------GG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.06101000000000
.............................................................................................................................................................................................................................................................................................................................................................TGGGTGT-------------------------------GTGGGTGTG----TGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.06101000000000
.................................................................................................................................................................................................................................................................................................................................................................TGT-------------------------------GTGGGTGTG----TGGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TGTG----TGGGTGTGT------------------------------------------------------------GGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GTGTG----TGGGTGTGT------------------------------------------------------------GGGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGT----GTGTGTGT-GTGT-G--TGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000010000
................................................................................................................................................................................................................................................................................................................................................................GTGT-------------------------------GTGGGTGTG----TGGGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
droEre2
AATTTCGA-GTCGCA-----AAATAGTTCAAGTCAT------------------------------------CTCTCTTACCGGTCG-------------AGC--------------------------------------------------------------AGTGAGTGTAGTGTATGTGTAGTGTATGTACCGGTGTATGTA-------------------------------------------------------------CCGGTG------------------T----------------------------------------A---------------------TGTACCGGTGTAT-----------------GTACCGGTGTATGTA----CCGGT--------------------------------------------------------G--TA--TGTACCGGTGT----ATGTATGT-ATG-TA--TGTATG--TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------TA-----TGTATGTATGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGTGT----ATGTATGT-ATG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1531000020
.........................................................................................................................................................................................AGTGTATGTACCGGTGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000020
..............................................................................................................................................................................................................................................................................................................................................................................AT-----------------GTACCGGTGTATGTA----CC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
........................................................................................................................................................................GAGTGTAGTGTATGTGTAGTGTATGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000100
.........................................................................................................................................................................................................TATGTA-------------------------------------------------------------CCGGTG------------------T----------------------------------------A---------------------TGTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
.............................................................................................................................................................................................................................................................................................................................................................................TAT-----------------GTACCGGTGTATGTA----CCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
.............................................................................................................................................................................................TATGTACCGGTGTATGTA-------------------------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
....................................................................................................AGC--------------------------------------------------------------AGTGAGTGTAGTGTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100
.............................................................................................................................................................................................TATGTACCGGTGTATGTA-------------------------------------------------------------CCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
..........................................................................................................................................................................................................ATGTA-------------------------------------------------------------CCGGTG------------------T----------------------------------------A---------------------TGTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
.............................................................................................................................................................................................................................................................................................................................................................................TAT-----------------GTACCGGTGTATGTA----C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
.....................................................................................................................................................................AGTGAGTGTAGTGTATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
.........................................................................................................................................................................................................TATGTA-------------------------------------------------------------CCGGTG------------------T----------------------------------------A---------------------TGTACCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
...................................................................................................................................................................................ATGTGTAGTGTATGTACCGGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0511000000
................................................................................................................................................................................TGTATGTGTAGTGTATGTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100
...........................................................................................................................................................................................................................................................................................................................................................................................................ATGTA----CCGGT--------------------------------------------------------G--TA--TGTACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
....................................................................................................................................................................................................................................................................................................T----------------------------------------A---------------------TGTACCGGTGTAT-----------------GTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TATGTA----CCGGT--------------------------------------------------------G--TA--TGTACCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
..............................................................................................................................................................................AGTGTATGTGTAGTGTATGTACCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000010
......................................................................................................................................................................GTGAGTGTAGTGTATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT----ATGTATGT-ATG-TA--TGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010
.....................................................................................................................................................................AGTGAGTGTAGTGTATGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100
.....................AATAGTTCAAGTCAT------------------------------------CTCTCTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000100
.............................................................................................................................................................................................................................................................................................................................................A---------------------TGTACCGGTGTAT-----------------GTACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TATGTA----CCGGT--------------------------------------------------------G--TA--TGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
....................................................................................................................................................................................................................................................................................................T----------------------------------------A---------------------TGTACCGGTGTAT-----------------GTACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
........................AGTTCAAGTCAT------------------------------------CTCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000010
............................................................................................................................................................................GTAGTGTATGTGTAGTGTATGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000100

Generated: 05/16/2015 at 10:38 PM