ID:

dvi_3792

 Coordinate:

scaffold_12855:3919409-3919559 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.7 -17.5 -17.4 -17.2

Flybase annnotation

exon [dvir_GLEANR_10698:2]; CDS [Dvir\GJ10797-cds]; intron [Dvir\GJ10797-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAACCTGTGTTTATCAGTTGTCCGAGTAGGTGTAATTTATGCTTGATAAGGCGCCCGTTTGTATCCAGCAACTGCTGAGTTTTTATATCGGATAATAGCTGTGTTTTCGCCACTGTCTGTGTATTTGTTATCAATTGATAAGGTGCCACGCTCTATCCTACCCGTTGTTATCTTTTTTTAATTTTTTGTATCCCACCTCAGTTACACCCAATCAAATTGAGCGCCTGTATTCGCGTTTCACCTCGCTGGAT
*******************************************************.((..(((.((..(((.((.(((.....((((.(((((...((..(((....)))..)))))))))))....))).)).)))....)))))...))**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060672
9x160_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 SRR060673
9_ovaries_total
 SRR060677
Argx9_ovaries_total
 V053
head
 SRR060670
9_testes_total
 M027
male body		 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060664
9_males_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060678
9x140_testes_total
 V047
embryo
 M028
head
 SRR060656
9x160_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060683
160_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060688
160_ovaries_total
......................................................................................................................................................................................................................AATTGAGCGCCTGTATTCGCG................ 21 0 1 4.00 4 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................ATTTATGCTTGATAAGGCGCC.................................................................................................................................................................................................... 21 0 1 3.00 3 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....TGTGTTTATCAGTTGTCCGAG................................................................................................................................................................................................................................. 21 0 1 3.00 3 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTGAGCGCCTGTATTCGCGTT.............. 22 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............CAGTTGTCCGAGTAGGTGTAA........................................................................................................................................................................................................................ 21 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCAGTTGTCCGAGTGGGTGTA......................................................................................................................................................................................................................... 21 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ACACCCAATCAAATTGAGCGC........................... 21 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................CAGTTACACCCAATCAAATTG................................ 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTGAGCGCCTGTATTCGCGTT.............. 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTCGCGTTTCACCTCGCTGGA. 21 0 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCAGTTGTCCGAGTAGGTGTA......................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ATAGGGTGCCACGCTCTATCC............................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TTATCGGTTGTCCGAGTGGGT............................................................................................................................................................................................................................ 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............ATCAGTTGTCCGAGTGGGTGTG......................................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AACTGCTGAGTTTTTGTATCG................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................ATTTTTTGTATCCCACCTCAGTC................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGTTTGTATCCAGCAACTG................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................TGGCTGTGTTTTCGCCACTG........................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................ATTATACTTCATAAGGCGCCC................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTTTGTATCCCACCTCAGTTG............................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTTGTATCCACCAACTGCTGA............................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGTCCGAGTAGGTGTAATTTAT................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GCCTGTATTCGCGTTTCACCT........ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTACACCCAATCAAATTGAGCGCCT......................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATCAAATTGAGCGCCTGTATTCGC................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTTTTATATCGGATAATA.......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTGAGCGCCTGTATTCGCG................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................ATGGGGCGCCCGTTTGTATCC......................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTATGCTTGATGGGGCGCCCG.................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTTGTATCCACCAACTGCTG.............................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTGAGCGTCTGTATTCGCGTT.............. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTTTGTATCCCACCTCAGTTA............................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TACACCCAATCAAATTGAGC............................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............ATCAGTTGTCCGAGCAGGTG........................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CAAATTGAGCGCCTGTATTCGC................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TCAATTGATAAGGTGCCACGC.................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GCCACGCTCTATCCTACCCGT...................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTATGCTTGATGGGGCGCCCGT................................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TATCAGTTGTCCGAGTGGGTG........................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATAGCTGTGTTTTCGCCACTG........................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TAGGGCGCCCGTTTGTATCCA........................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTATATCGGATAATAGCTGTC.................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAATTGAGCGCCTGTATTCGC................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CTCAGTTACACCCAATCAAATT................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TATATCGGATAATAGCTGTGT................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CACCCAATCAGGTTGAGCGCC.......................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATCCACCAACTGCTGAGTTTT........................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................ATAATAGCTGTGTTTTCGCCA........................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TTATCAGTTGTCCGAGTGGGT............................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGCACCCAATCAAGTTGAGC............................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CAATCAAATTGAGCGCCTG........................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTATATCGGATAATAGCTGT..................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........TTTATCAGTTGTCCGAGTGGGTGT.......................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAAGGTGCCACGCTCTATCCT............................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TATCAGTTGTCCGAGTAGGTG........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GATTGAGCGCCTGTATTCGCG................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................TCGCGTTTCACCTCGCTGGA. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................ATTCGCGTTTCACCTCGCTG... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CCCAATCAAATTGAGCGCCTG........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGCCACGCTCTATCCTACCCG....................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TCTATCCTGCCCGTTGTTATC............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TATGCTTGATAGGGCGCCCGT................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TTTATCAGTTGTCCGAGTAGG............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTTGTTATCAATTGATAAGG............................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTACACCCAATCAAATTGAGC............................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................ATTGAGCGCCTGTATTCGCGT............... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CTTTACACCCAATCAAATTGAGC............................. 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................TGAGCGCCTGTATTCGCGTTT............. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GATAATAGCTGTGTTTTCGCC............................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGTATTCGCGTTTCACCTCGCTG... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............ATCGGTTGTCCGAGTGGGTGT.......................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CCTGTATTCGCGTTTCACCT........ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CAAATTGAGCGCCTGTATTCG.................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGTTTTCGCCACTGTCTGTGT................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAATTGAGCGCCTGTATTCG.................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TTGTCCGAGTAGGTGTAATTT..................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGCAACTGCTGAGTTTTTATA.................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGTTTTCGCCACTGTCTG.................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAATTGAGCGCCTGTATTCGCG................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GGCTGTGTTTTCGCCACTGA....................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TTTGTGCTTGAGAAGGCGGCCG.................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TGAGGCACCGGTTTGTATCCA........................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CTTGTGCTTGAGAAGGCGCCC................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGCACCCAATCAAGTTGAGC............................. 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGTCAATTGATGGGGTGCCAC...................................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TATCAGATGGCCGAGTTGG............................................................................................................................................................................................................................. 19 3 19 0.11 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CCCTATCAAATTGTGCGC........................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GTCAGTGTAGTGGTTATCA...................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTGGACACAAATAGTCAACAGGCTCATCCACATTAAATACGAACTATTCCGCGGGCAAACATAGGTCGTTGACGACTCAAAAATATAGCCTATTATCGACACAAAAGCGGTGACAGACACATAAACAATAGTTAACTATTCCACGGTGCGAGATAGGATGGGCAACAATAGAAAAAAATTAAAAAACATAGGGTGGAGTCAATGTGGGTTAGTTTAACTCGCGGACATAAGCGCAAAGTGGAGCGACCTA
****************************************************************************************************.((..(((.((..(((.((.(((.....((((.(((((...((..(((....)))..)))))))))))....))).)).)))....)))))...))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 M027
male body		 SRR060681
Argx9_testes_total
 SRR060665
9_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060683
160_testes_total
 SRR060689
160x9_testes_total
 SRR060672
9x160_females_carcasses_total
 V053
head
 SRR060659
Argentina_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060680
 9xArg_testes_total
 V047
embryo
 M028
head
 SRR060657
140_testes_total
 SRR060687
9_0-2h_embryos_total
................................................................................................................................................................................................GGTGGAGTCAATGTGGGTT........................................ 19 0 1 3.00 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0
..................................................................TCGTTGACGACTCAAAAATAT.................................................................................................................................................................... 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTCCACGGTGCGAGGTAGGAT........................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CGGTGACAGACACATAAACAA.......................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................TCGTTGACGACTCAAAAGTAT.................................................................................................................................................................... 21 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CGAGGTAGGATGGGCGACAAT................................................................................. 21 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......CACAAATAGTCAAGAGGCACGT............................................................................................................................................................................................................................... 22 3 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
...............................................................................................................................................................................................GGGTGGAGTCAATGTGGGTTA....................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GCAGGCTCATCCACGTTAAAT.................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCCGCGGGCAAACATAGGTC....................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GTCAATGTGGGTTAGTTTGAC................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................ACTATTCCGCGGGCAAACATA........................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGGAGTCAATGTGGGTTAGTT.................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CAGGCTCATCCACATTAAATA................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ATCCACATTAAATACGAACTA............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CACGTTAGATACGAACTATTC......................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GGAGTCAATGTGGGTTAGTTT................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TCCACGGTGCGAGATAGGATG.......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGTGGAGTCGATGTGGGTTA....................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCAATGTGGGTTAGTTTAATT............................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TTCCGCGGGCAAACGTAGGTC....................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGCGGACATAAGCGCAAAGTGG......... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTGACGACTCGGGAATATAGC................................................................................................................................................................. 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCCGCGGGCAAACATAGGTCG...................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TTCCGCGGGCAAACATAGGTC....................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............GTCAACAGGCTCATCCACAT......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ACAAGTAGTCGACAGGCTCAT............................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GGTTGACGACTCAAAAATATA................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AGCCTATTATCGACACAAAAG............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTGGAGTCGATGTGGGTTAGT..................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GGAGTCAATGTGGGTTAGTT.................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CAGACACATAAACAATAGTTA.................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TAGTCAACAGGCTCATCCACA.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCGCGGACATAAGCGCAAAG............ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................ATAGGGTGGAGTCAATGTGGG.......................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CGCGGGCAAACATAGGTGGT..................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ACTATTCCACGGTGCGAGGTA............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CTTAAAAAACATAGGGTGGAGT................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TCGGTGACAGACACATAAACA........................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CGACTCAAAAATATAGCCTATT............................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CACGGTGCGAGATAGGGTGG......................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CGAGGTAGGGTGGGCAACAA.................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCAATGTGGGTTAGTTTAACT............................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............GTCAACAGGCTCATCCACGTT........................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGGTGCGAGGTAGGATGGGCA...................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GATAGGATGGGCAACAATAAA.............................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................GGTGCGAGATAGGATGGGCAA..................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCGCGGGCAAACGTAGGTGGT..................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGCGAGATAGGATGGGCAACA................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGTTGACGACTCAAAAATAT.................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ACTATTCCACGGTGCGAGA................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GCGGGCAAACATAGGTGGTTGA.................................................................................................................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................GGTCGTTGACGACTCAAGAA....................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ACATAGGGTGGAGTCAATGTGG........................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GACACATAAACGATAGTTGACT................................................................................................................. 22 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AGGCTCGTCCACATTAAGTAC.................................................................................................................................................................................................................. 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................GTTGGAGTCAAGGTGGGTT........................................ 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CGAGGTAGGGTGGGCGACAAT................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................CGGTGACAGACACATAGGCAA.......................................................................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GAATAGTCAGGAGGCTCAT............................................................................................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AAACATAAGGTGGACTCA................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ACAAATGGTCTACAGCCTCA................................................................................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TAAAAAACCTAGGGTGCAAT................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................AGTCAAAGTAGGTTAGTATAA................................. 21 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTGTGAGATCGGATAGGCA...................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAATTAAAGAACTTAGCGT........................................................ 21 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................AAAAATATAGCATATGATCT........................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:3919359-3919609 + dvi_3792 AAA----------------CCTGTGTTTATCAGTTGTCCGAGTAG-----GTGTAATTTATGCTTGATAAGGCGCCC----------GTTTGTATCCAGCAACTGCTGAGTTTT--TATATCGGATAATAGCTGTGT-----TTTCGCCACTGTCTG-TGTATTTGTTATCAATTGATAAGGTGCCAC------------GCTCTA-TCCTACCCGTTGTT-------AT-CTTTTTTTAAT-TTTTTGTA-----TCCCACCTCAGTTACACCCAATCAAATTGAGCGCCTGTATTCGCGTTTCACCTCGCTGGAT
droMoj3 scaffold_6540:8227491-8227732 + ACAAGCAAACGAATGTATGCATGTGTTTATCAGTTGTTCGAGTAG-----GTGTAATTCGTGTGTGATAAGGCCCTCAGCTATAACGGTATATATCCAACGAGT-------GTTCATATCTCTGATAATGGCA------------------CATTTC-TACATTTCTTATCAATCGACTGGACTCCAA------------CCTCTTACG--------------------TTTTCT---CTGCCC----T--CCACT---CTTTGCAGTTACACCCAATCAGATTGAGCGTCTTTACTCGCGCTTCACCTCGCTGGAT
droGri2 scaffold_14906:6543308-6543518 + AAT----------------CGT-CATTTATCAGTTGTTCTTGAAGTACGCGTGTAATTT----GCGATAAGGCC-ACAGCAATA----------------------------------------ATAATAATTGTGTGAATTTCTTATCACTGCCGACTACAACTACTATCTAATAATAAGTTGATAAACATTTGGTCAACC-----------------------------------TCATTTT----T--ATCTC---CTCGCCAGTTACTCCCAATCAAATTGAGCGTCTTTATTCGCGCTTCACCTCGCTGGAT
droWil2 scf2_1100000004902:11635980-11636073 - TAT----------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------CTTTCTGATAA-TGTTTTCTT-ATC----T--TTTTC---ATTCGCAGTTACTCCCAATCAAATTGAACGTTTATACTCACGGTTCACCTCACTGGAT
dp5 2:11221105-11221157 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTACTCCCAACCAAATCGAGAGATTGTACTCGCGCTTCACGTCGTTGGAT
droPer2 scaffold_0:9249323-9249375 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTACTCCCAACCAAATCGAGAGATTGTACTCGCGCTTCACGTCGTTGGAT
droAna3 scaffold_13340:1419187-1419291 - CTT----------------TCCTTTCTT-------GTTTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAA----------TTTAGTAACAA-T--------ATTC----T--GTTTT---TTTTTTAGTTACCCCCAACCAAATCGAGCGACTGTACTCCCGTTTCACTTCCCTGGAT
droBip1 scf7180000396712:2902741-2902841 + TTG----------------TT--------------ATTCTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAA----------TTAAATATAAA-T-----AATTGT----TATA-----TTTTATTTTAGTTACTCCCAATCAAATCGAGCGTCTTTACTCGCGTTTCACATCGCTCGAT
droKik1 scf7180000301874:68562-68644 + TTT----------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------------TTTTGT---TATTTT----C--CTTCT---GTGCTCAGTCACTCCCAATCAAATTGAACGGCTCTACTCGCGCTTCACGTCGCTGGAC
droFic1 scf7180000453850:884646-884711 - TTC----------------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTGCGCAGTCACCCCCAACCAAATTGAGCGGCTGTACTCCCGCTTTACATCGTTGGAT
droEle1 scf7180000491278:134410-134462 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCACACCCAACCAAATTGAGAGGCTGTACTCGCGATTCACCTCGTTGGAT
droRho1 scf7180000780094:46142-46212 + ATT----------------TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TTCA-----TGCCCTTATAGTCACCCCTAACCAAATTGAGAGGCTGTTCTCGCGCTTCACCTCGTTGGAT
droBia1 scf7180000302155:3281522-3281590 + AAC----------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTGTT---TTTTTCAGTCACTCCCAACCAGATTGAGCGCCTGTACTCGCGCTTCACCTCGTTGGAT
droTak1 scf7180000415754:297302-297354 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCACCCCCAATCAAATTGAGCGACTGTACTCGCGCTTCACCTCGCTGGAT
droEug1 scf7180000409766:447875-447958 - TTG----------------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------TATTTTTATTATG-----TTTA-----TTTACGTGCAGTCACTCCCAATCAAATTGAACGATTGTACTCTCGATTCACCTCGTTGGAT
dm3 chr3R:1479427-1479504 - GTT----------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATCAAT----------TTTA---TTTTCCAGTCACCCCCAACCAAATCGAGCGACTTTACTCGCGCTTCACCTCCTTGGAT
droSim2 3r:1375361-1375432 - TTA----------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC----A--CTTTA---TTTTCCAGTCACCCCCAACCAAATTGAGCGACTTTACTCGCGCTTCACCTCCTTGGAT
droSec2 scaffold_6:1594331-1594383 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCACCCCCAACCAAATTGAGCGACTTTACTCGCGCTTCACCTCCTTGGAT
droYak3 3R:17443618-17443712 - CTT----------------TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGTTCGCTGAT-------AA-ATT---AATTTTC----A--ATTCA---TTTTTCAGTCACCCCCAACCAAATTGAGCGACTTTACTCTCGCTTCACCTCGTTGGAT
droEre2 scaffold_4770:1752214-1752266 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCACCCCCAACCAAATTGAGCGACTTTACTCCCGCTTCACCTCGTTGGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAA----------------CCTGTGTTTATCAGTTGTCCGAGTAG-----GTGTAATTTATGCTTGATAAGGCGCCC----------GTTTGTATCCAGCAACTGCTGAGTTTT--TATATCGGATAATAGCTGTGT-----TTTCGCCACTGTCTG-TGTATTTGTTATCAATTGATAAGGTGCCAC------------GCTCTA-TCCTACCCGTTGTT-------AT-CTTTTTTTAAT-TTTTTGTA-----TCCCACCTCAGTTACACCCAATCAAATTGAGCGCCTGTATTCGCGTTTCACCTCGCTGGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................AATTGAGCGCCTGTATTCGCG................2114.004000000000010000000000000000100000000000000000000000000000000020
.......................................................ATTTATGCTTGATAAGGCGCC.................................................................................................................................................................................................................................................2113.003001000100000000000000010000000000000000000000000000000000000000
.....................TGTGTTTATCAGTTGTCCGAG...................................................................................................................................................................................................................................................................................2113.003000000000000000000000000000001010000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................ATTGAGCGCCTGTATTCGCGTT..............2212.002000000000000000000000000000000000000000000000000000000000001010
..............................CAGTTGTCCGAGTAG-----GTGTAA.....................................................................................................................................................................................................................................................................2112.002000000000000000000000000000100000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................ACACCCAATCAAATTGAGCGC...........................2112.002000000000000000000000100000000000000000100000000000000000000000
........................................................................................................................................................................................................................................................................CAGTTACACCCAATCAAATTG................................2112.002000000000000000000000000000000000000000200000000000000000000000
..........................................................................................................................................................................................................................................................................................TTGAGCGCCTGTATTCGCGTT..............2112.002000000000000000000000010000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................TTCGCGTTTCACCTCGCTGGA.2112.002000000000000000000000000000100010000000000000000000000000000000
.............................TCAGTTGTCCGAGTAG-----GTGTA......................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000020
................................................................................................................................................................................................................................................AT-TTTTTGTA-----TCCCACCTCAGTC................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................C----------GTTTGTATCCAGCAACTG....................................................................................................................................................................................................................1911.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TTTTGTA-----TCCCACCTCAGTTG...............................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................TGTCCGAGTAG-----GTGTAATTTAT................................................................................................................................................................................................................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................GCCTGTATTCGCGTTTCACCT........2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TTACACCCAATCAAATTGAGCGCCT.........................2511.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ATCAAATTGAGCGCCTGTATTCGC.................2411.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................AGTTTT--TATATCGGATAATA...........................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................ATTGAGCGCCTGTATTCGCG................2011.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................TTTTGTA-----TCCCACCTCAGTTA...............................................2111.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TACACCCAATCAAATTGAGC.............................2011.001000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................................................CAAATTGAGCGCCTGTATTCGC.................2211.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................TCAATTGATAAGGTGCCAC------------GC...................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GCCAC------------GCTCTA-TCCTACCCGT....................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................ATAGCTGTGT-----TTTCGCCACTG....................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................TT--TATATCGGATAATAGCTGTC.....................................................................................................................................................................................2211.001000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AAATTGAGCGCCTGTATTCGC.................2111.001000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CTCAGTTACACCCAATCAAATT.................................2211.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................TATATCGGATAATAGCTGTGT-----...............................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................ATAATAGCTGTGT-----TTTCGCCA.......................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................CAATCAAATTGAGCGCCTG........................1911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................TT--TATATCGGATAATAGCTGT......................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................TAAGGTGCCAC------------GCTCTA-TCCT..........................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
...........................TATCAGTTGTCCGAGTAG-----GTG........................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TCGCGTTTCACCTCGCTGGA.2011.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ATTCGCGTTTCACCTCGCTG...2011.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CCCAATCAAATTGAGCGCCTG........................2111.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................TGCCAC------------GCTCTA-TCCTACCCG.....................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................TTTATCAGTTGTCCGAGTAG-----G..........................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................TTTGTTATCAATTGATAAGG.......................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TTACACCCAATCAAATTGAGC.............................2111.001000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................ATTGAGCGCCTGTATTCGCGT...............2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TGAGCGCCTGTATTCGCGTTT.............2111.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................GATAATAGCTGTGT-----TTTCGCC........................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TGTATTCGCGTTTCACCTCGCTG...2311.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................CCTGTATTCGCGTTTCACCT........2011.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................CAAATTGAGCGCCTGTATTCG..................2111.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................TGT-----TTTCGCCACTGTCTG-TGT............................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................AAATTGAGCGCCTGTATTCG..................2011.001000000000000000000000000000000010000000000000000000000000000000
.................................TTGTCCGAGTAG-----GTGTAATTT..................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGT-----TTTCGCCACTGTCTG-...............................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AAATTGAGCGCCTGTATTCGCG................2211.001000000000000000000000010000000000000000000000000000000000000000
droMoj3
ACAAGCAAACGAATGTATGCATGTGTTTATCAGTTGTTCGAGTAG-----GTGTAATTCGTGTGTGATAAGGCCCTCAGCTATAACGGTATATATCCAACGAGT-------GTTCATATCTCTGATAATGGCA------------------CATTTC-TACATTTCTTATCAATCGACTGGACTCCAA------------CCTCTTACG--------------------TTTTCT---CTGCCC----T--CCACT---CTTTGCAGTTACACCCAATCAGATTGAGCGTCTTTACTCGCGCTTCACCTCGCTGGATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................CACCCAATCAGATTGAGC.............................1811.001000100
...........................................................................................................................................................................................................................................................................TTACACCCAATCAGATTGAGC.............................2111.001100000
........................................................................................................................................................................................................................................................................................GATTGAGCGTCTTTACTCGCG................2111.001100000
....................................................................................................................................................................................................................................................................................................TTACTCGCGCTTCACCTC.......1811.001100000
................................................................................................................................................................................................................................................................................CCCAATCAGATTGAGCGTCTTTACTCGC.................2811.001100000
.........................................................................................................................................................................................................................................................................................ATTGAGCGTCTTTACTCGCGC...............2111.001100000
..............................................................................................................................................................................................................................................CTGCCC----T--CCACT---CTTTGCAGAA................................................2211.001000010
........................................................................................................................................................................................................................................................................................GATTGAGCGTCTTTACTCGC.................2011.001100000
................................................................................................................................................................................................................................................................................................GTCTTTACTCGCGCTTCACCTCGCTGG..2711.001100000
...............................................................................................................................................................................................................................................................................................CGTCTTTACTCGCGCTTCACCTCGCTG...2711.001100000
droGri2
AAT----------------CGT-CATTTATCAGTTGTTCTTGAAGTACGCGTGTAATTT----GCGATAAGGCC-ACAGCAATA----------------------------------------ATAATAATTGTGTGAATTTCTTATCACTGCCGACTACAACTACTATCTAATAATAAGTTGATAAACATTTGGTCAACC-----------------------------------TCATTTT----T--ATCTC---CTCGCCAGTTACTCCCAATCAAATTGAGCGTCTTTATTCGCGCTTCACCTCGCTGGATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAT----------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------CTTTCTGATAA-TGTTTTCTT-ATC----T--TTTTC---ATTCGCAGTTACTCCCAATCAAATTGAACGTTTATACTCACGGTTCACCTCACTGGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................GTTTATACTCACGGTTCACCT........2111.00101000
............................................................................................................................................................................................................................................................................................GAACGTTTATACTCACGGTT.............2011.00101000
..............................................................................................................................................................................................................................................................................................ACGTTTATACTCACGGTTCACCTCACTG...2811.00101000
............................................................................................................................................................................................................................................................................TACTCCCAATCAAATTGAACGTT..........................2311.00100100
dp5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTACTCCCAACCAAATCGAGAGATTGTACTCGCGCTTCACGTCGTTGGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................TGTACTCGCGCTTCACGTCGTT....2214.0040400000000
.....................................................................................................................................................................................................................................................................................................TACTCGCGCTTCACGTCGT.....1911.0010100000000
.................................................................................................................................................................................................................................................................................................ATTGTACTCGCGCTTCACGTCGTT....2411.0010100000000
...............................................................................................................................................................................................................................................................................TCCCAACCAAATCGAGAGATTGTACTCGC.................2911.0010100000000
....................................................................................................................................................................................................................................................................................ACCAAATCGAGAGATTGTACTCGC.................2411.0010100000000
....................................................................................................................................................................................................................................................................................................GTACTCGCGCTTCACGTCGTTGG..2311.0010010000000
...................................................................................................................................................................................................................................................................................................TGTACTCGCGCTTCACGTCGT.....2111.0010100000000
................................................................................................................................................................................................................................................................................CCCAACCAAATCGAGAGATTGTACTCGC.................2811.0010100000000
..................................................................................................................................................................................................................................................................................................TTGTACTCGCGCTTCACGTCGTT....2311.0010100000000
...................................................................................................................................................................................................................................................................................AACCAAATCGAGAGATTGTACTCGCGC...............2711.0010010000000
....................................................................................................................................................................................................................................................................................................GTACTCGCGCTTCACGTCGTT....2111.0010100000000
.......................................................................................................................................................................................................................................................................................AAATCGAGAGATTGTACTCGCGCTT.............2511.0010100000000
............................................................................................................................................................................................................................................................................................GAGAGATTGTACTCGCGCT..............1911.0010000010000
droPer2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTACTCCCAACCAAATCGAGAGATTGTACTCGCGCTTCACGTCGTTGGATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................CGAGAGATTGTACTCGCGC...............1911.001010000
................................................................................................................................................................................................................................................................................CCCAACCAAATCGAGAGATTGTACTCGC.................2811.001100000
............................................................................................................................................................................................................................................................................................GAGAGATTGTACTCGCGCTT.............2011.001000001
................................................................................................................................................................................................................................................................................CCCAACCAAATCGAGAGATTGT.......................2211.001100000
droAna3
CTT----------------TCCTTTCTT-------GTTTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAA----------TTTAGTAACAA-T--------ATTC----T--GTTTT---TTTTTTAGTTACCCCCAACCAAATCGAGCGACTGTACTCCCGTTTCACTTCCCTGGATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................TACCCCCAACCAAATCGAGC.............................2012.002010100
.......................................................................................................................................................................................................................................................................................AAATCGAGCGACTGTACT....................1811.001100000
.............................................................................................................................................................................................................................................................................ACCCCCAACCAAATCGAGC.............................1911.001010000
....................................................................................................................................................................................................................................................................................................GTACTCCCGTTTCACTTCCCTG...2211.001010000
.....................................................................................................................................................................................................................................................................................CCAAATCGAGCGACTGTACTCCCGT...............2511.001010000
.............................................................................................................................................................................................................................................................................ACCCCCAACCAAATCGAGCGACT.........................2311.001010000
.................................................................................................................................................................................................................................................................................................ACTGTACTCCCGTTTCACTTCCCTG...2511.001100000
.........................................................................................................................................................................................................................................................................................ATCGAGCGACTGTACTCCCGTTT.............2311.001100000
...........................................................................................................................................................................................................................................................................................CGAGCGACTGTACTCCCGTT..............2011.001100000
........................................................................................................................................................................................................................................................................................AATCGAGCGACTGTACTCCCGTT..............2311.001100000
..................................................................................................................................................................................................................................................................................CAACCAAATCGAGCGACTGTACTCCCGT...............2811.001100000
...........................................................................................................................................................................................................................................................................................CGAGCGACTGTACTCCCGT...............1911.001010000
....................................................................................................................................................................................................................................................................................................GTACTCCCGTTTCACTTCCCC....2111.001010000
........................................................................................................................................................................................................................................................................................AATCGAGCGACTGTACTCCC.................2011.001010000
................................................................................................................................................................................................................................................................................................GACTGTACTCCCGTTTCACTTCCCTG...2611.001100000
..........................................................................................................................................................................................................................................................................................TCGAGCGACTGTACTCCCGTT..............2111.001000010
..................................................................................................................................................................................................................................................................................CAACCAAATCGAGCGACTGTACTCCCGTT..............2911.001100000
droBip1
TTG----------------TT--------------ATTCTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAA----------TTAAATATAAA-T-----AATTGT----TATA-----TTTTATTTTAGTTACTCCCAATCAAATCGAGCGTCTTTACTCGCGTTTCACATCGCTCGATSizeHit CountTotal NormTotal
No Reads
droKik1
TTT----------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------------TTTTGT---TATTTT----C--CTTCT---GTGCTCAGTCACTCCCAATCAAATTGAACGGCTCTACTCGCGCTTCACGTCGCTGGACSizeHit CountTotal NormTotal
No Reads
droFic1
TTC----------------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTGCGCAGTCACCCCCAACCAAATTGAGCGGCTGTACTCCCGCTTTACATCGTTGGATSizeHit CountTotal NormTotal
No Reads
droEle1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCACACCCAACCAAATTGAGAGGCTGTACTCGCGATTCACCTCGTTGGATSizeHit CountTotal NormTotal
No Reads
droRho1
ATT----------------TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TTCA-----TGCCCTTATAGTCACCCCTAACCAAATTGAGAGGCTGTTCTCGCGCTTCACCTCGTTGGATSizeHit CountTotal NormTotal
No Reads
droBia1
AAC----------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTGTT---TTTTTCAGTCACTCCCAACCAGATTGAGCGCCTGTACTCGCGCTTCACCTCGTTGGATSizeHit CountTotal NormTotal
No Reads
droTak1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCACCCCCAATCAAATTGAGCGACTGTACTCGCGCTTCACCTCGCTGGATSizeHit CountTotal NormTotal
No Reads
droEug1
TTG----------------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------TATTTTTATTATG-----TTTA-----TTTACGTGCAGTCACTCCCAATCAAATTGAACGATTGTACTCTCGATTCACCTCGTTGGATSizeHit CountTotal NormTotal
No Reads
dm3
GTT----------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATCAAT----------TTTA---TTTTCCAGTCACCCCCAACCAAATCGAGCGACTTTACTCGCGCTTCACCTCCTTGGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................CCAAATCGAGCGACTTTACTCC..................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CCCAACCAAATCGAGCGACTTTACT....................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ACCAAATCGAGCGACTTTACTCG..................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................ACCCCCAACCAAATCGAGCGACTTT.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................CAAATCGAGCGACTTTACTCGCGCT..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CGACTTTACTCGCGCTTCACCTC.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................ACTTTACTCGCGCTTCACCTC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AATCGAGCGACTTTACTCGCGCTTCAC..........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ACCAAATCGAGCGACTTTACTCGCG................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TTTTATCAAT----------TTTA---TTTTCCAG..................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CCCAACCAAATCGAGCGACTT........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................TCACCCCCAACCAAATCGAGCGAC..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................CGCGCTTCACCTCCTTGGAT2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ACCAAATCGAGCGACTTTACTCGC.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CTCGCGCTTCACCTCCTTGGAT2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CCAAATCGAGCGACTTTACTC...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................ACTCGCGCTTCACCTCCTTGG..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AAATCGAGCGACTTTACTCG..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................CCCAACCAAATCGAGCGACTTTACTCGC.................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GTCACCCCCAACCAAATCGAGCGAC..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................AGCGACTTTACTCGCGCTTCACCTCC......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................AGCGACTTTACTCGCGCTTCACC.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CGCGCTTCACCTCCTTGG..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AAATCGAGCGACTTTACTCGCGCTTC............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................ACCCCCAACCAAATCGAGCGA...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CCCAACCAAATCGAGCGAC..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CCCCCAACCAAATCGAGCGACTTTACT....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ACTCGCGCTTCACCTCCTTG...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CCAACCAAATCGAGCGAC..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTA----------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC----A--CTTTA---TTTTCCAGTCACCCCCAACCAAATTGAGCGACTTTACTCGCGCTTCACCTCCTTGGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................GACTTTACTCGCGCTTCACCTCCTTG...2611.00100010000000000000
.................................................................................................................................................................................................................................................................................................ACTTTACTCGCGCTTCACCTCC......2211.00100001000000000000
...............................................................................................................................................................................................................................................................................................CGACTTTACTCGCGCTTCACC.........2111.00101000000000000000
...................................................................................................................................................................................................................................................................................AACCAAATTGAGCGACTTTACTC...................2311.00100100000000000000
.......................................................................................................................................................................................................................................................................................AAATTGAGCGACTTTACTC...................1911.00100010000000000000
droSec2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCACCCCCAACCAAATTGAGCGACTTTACTCGCGCTTCACCTCCTTGGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................CAACCAAATTGAGCGACTTTACT....................2311.0010010
...................................................................................................................................................................................................................................................................................................TTTACTCGCGCTTCACCTCCTTGG..2411.0010010
....................................................................................................................................................................................................................................................................................................TTACTCGCGCTTCACCTCCTTGG..2311.0010010
...................................................................................................................................................................................................................................................................................................TTTACTCGCGCTTCACCTCCTTG...2311.0010100
............................................................................................................................................................................................................................................................................CACCCCCAACCAAATTGAGC.............................2011.0010010
................................................................................................................................................................................................................................................................................................GACTTTACTCGCGCTTCA...........1811.0010001
..................................................................................................................................................................................................................................................................................................CTTTACTCGCGCTTCACCT........1911.0010010
....................................................................................................................................................................................................................................................................................................TTACTCGCGCTTCACCTCC......1911.0010010
................................................................................................................................................................................................................................................................................................GACTTTACTCGCGCTTCACCTCCTTGG..2711.0010010
.................................................................................................................................................................................................................................................................................................ACTTTACTCGCGCTTCACCT........2011.0010010
droYak3
CTT----------------TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGTTCGCTGAT-------AA-ATT---AATTTTC----A--ATTCA---TTTTTCAGTCACCCCCAACCAAATTGAGCGACTTTACTCTCGCTTCACCTCGTTGGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................GACTTTACTCTCGCTTCACCTCGTTG...2612.00202000000000
................................................................................................................................................................................................................................................................................................GACTTTACTCTCGCTTCACCTCGT.....2412.00201000010000
...........................................................................................................................................................................................................................................................................TCACCCCCAACCAAATTGAGC.............................2111.00101000000000
.....................................................................................................................................................................................................................................................................................CCAAATTGAGCGACTTTACTCTC.................2311.00110000000000
..................................................................................................................................................................................................................................................................................................CTTTACTCTCGCTTCACCTC.......2011.00100100000000
....................................................................................................................................................................................................................................................................................................TTACTCTCGCTTCACCTCGTT....2111.00100100000000
................................................................................................................................................................................................................................................................................................GACTTTACTCTCGCTTCACCTCGTC....2511.00100100000000
...................................................................................................................................................................................................................................................................................AACCAAATTGAGCGACTTTACTCT..................2411.00100000010000
........................................................................................................................................................................................................................................................................................................TCTCGCTTCACCTCGTTGGAT2111.00101000000000
................................................................................................................................................................................................................................................................................CCCAACCAAATTGAGCGAC..........................1911.00110000000000
...........................................................................................................................................................................................................................................................................TCACCCCCAACCAAATTGAG..............................2011.00100000010000
.........................................................................................................................................................................................................................................................................................ATTGAGCGACTTTACTCTCGC...............2111.00100000100000
................................................................................................................................................................................................................................................................................................GACTTTACTCTCGCTTCACCT........2111.00100100000000
........................................................................................................................................................................................................................................................................................AATTGAGCGACTTTACTCT..................1911.00101000000000
...............................................................................................................................................................................................................................................................................................CGACTTTACTCTCGCTTCACCTC.......2311.00101000000000
............................................................................................................................................................................................................................................................................CACCCCCAACCAAATTGAGC.............................2011.00101000000000
................................................................................................................................................................................................................................................................................................GACTTTACTCTCGCTTCACCTC.......2211.00100100000000
..................................................................................................................................................................................................................................................................................CAACCAAATTGAGCGACTTTACTC...................2411.00100000010000
droEre2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCACCCCCAACCAAATTGAGCGACTTTACTCCCGCTTCACCTCGTTGGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................CACCCCCAACCAAATTGAGC.............................2011.0010000010
...............................................................................................................................................................................................................................................................................................CGACTTTACTCCCGCTTCACCTCGT.....2511.0010001000
...................................................................................................................................................................................................................................................................................AACCAAATTGAGCGACTTTACTCCCGC...............2711.0011000000
...................................................................................................................................................................................................................................................................................AACCAAATTGAGCGACTTTACTCCC.................2511.0010100000
...................................................................................................................................................................................................................................................................................................TTTACTCCCGCTTCACCTCGT.....2111.0010000010
......................................................................................................................................................................................................................................................................................CAAATTGAGCGACTTTACTCC..................2111.0010010000
...........................................................................................................................................................................................................................................................................TCACCCCCAACCAAATTGAGC.............................2111.0010000100
............................................................................................................................................................................................................................................................................CACCCCCAACCAAATTGAGCGA...........................2211.0010000100
................................................................................................................................................................................................................................................................................................GACTTTACTCCCGCTTCACCTCGT.....2411.0010100000
................................................................................................................................................................................................................................................................................................GACTTTACTCCCGCTTCACCTC.......2211.0010100000

Generated: 05/16/2015 at 09:59 PM