ID:

dvi_3733

 Coordinate:

scaffold_12855:3478463-3478613 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.5 -33.2 -33.2

Flybase annnotation

exon [dvir_GLEANR_10684:2]; CDS [Dvir\GJ10783-cds]; intron [Dvir\GJ10783-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAAACCCGTCTAATGGCTTAATCTATGGCTGTAGGCCCATTAATGAGCCTGCCGTAAACTTCAATAATGGTGGCTTCTACAATATGCCCGCACCACCAACGCCAGCCTATGCAGGCGGCGGTGTTGCGGCTGGCGGCCTGTACAACGGCTGCTCGAGCCTGGAGCTGTCGCCGTCGATGTCGCGCTTTCATCCTTACCAGCGGCAGGCATCCGATTTTTGCCAGTTCTCGCCGGGCTATGGCCGGCAGTC
******************************************************************************************************............(((((((((.((..(((((((((((........)))))))..))))..)))))))))))****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 M047
female body
 V047
embryo
 SRR060667
160_females_carcasses_total
 M027
male body		 SRR060687
9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060659
Argentina_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR1106729
mixed whole adult body
..........................................................................................................................................................CGAGCCTGGAGCTGTCGCC.............................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................CCAGCCTATGCAGGCGGCGGTGTT............................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................GTACAACGGCTGCTCGAGCCT.......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GCCTGGAGCTGTCGCCGTCGAT........................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................TGCCGTCGATGTCGCGCTTTCATC.......................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................CCAGCCTATGCAGGCGGCGG................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................GAGCCTGCCGTAAACTTCAATAATGGT................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................AGCCTATGCAGGCGGCGGTGTTGC........................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................GAGCCTGCCGTAAACTTCAAT......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................CATTAATGAGCCTGCCGTAAACT.............................................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................CTACAATATGCCCGCACCACCAAC...................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................GCCTATGCAGGCGGCGGTGTTGC........................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CGTCGATGTCGCGCTTTCATC.......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................GCCAGCCTATGCAGGCGGCGGTGTTGC........................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTTTTGCCAGTTCTCGCCGGG............... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................GCTGCTCGAGCCTGGAGCC.................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................CCAGCCTATGCAGGCGGCGGTGTTTCC.......................................................................................................................... 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................GGCTGGCGGCCTGTACAACGGC..................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................CCAGCCTATGCAGGCGGCGGTGTTGC........................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................GCTTCTACAATATGCCCGCAC............................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................AACTTCAACAATGGTCGC................................................................................................................................................................................ 18 2 4 0.50 2 0 0 0 0 2 0 0 0 0 0
.............................................GAGCCCGCCGTAAACTTC............................................................................................................................................................................................ 18 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................CTATGCAGTCGGCGGTTTTGT........................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTGCTAGTTGTCGGCGGGCT............. 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
.........................................................AACTTCAACAATGGTCGCCT.............................................................................................................................................................................. 20 3 9 0.22 2 0 0 0 0 2 0 0 0 0 0
......................................................................................................................................................................................................................................GCCAGCCTATGGCCTGCAGTC 21 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................GTGCGAGAGCCTGGAGCTGT.................................................................................. 20 3 16 0.13 2 0 0 0 0 0 0 0 2 0 0
................................................................ATTATGTAGGCTTCTACAATA...................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0
........................................................................................CCGGACCATCAACGCC................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...........................................................CTTCAACAATGGTCGCCTC............................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GTTTTGGGCAGATTACCGAATTAGATACCGACATCCGGGTAATTACTCGGACGGCATTTGAAGTTATTACCACCGAAGATGTTATACGGGCGTGGTGGTTGCGGTCGGATACGTCCGCCGCCACAACGCCGACCGCCGGACATGTTGCCGACGAGCTCGGACCTCGACAGCGGCAGCTACAGCGCGAAAGTAGGAATGGTCGCCGTCCGTAGGCTAAAAACGGTCAAGAGCGGCCCGATACCGGCCGTCAG
******************************************************************************............(((((((((.((..(((((((((((........)))))))..))))..)))))))))))****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060666
160_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR1106728
larvae
 M027
male body		 V116
male body		 M061
embryo
 SRR060676
9xArg_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060678
9x140_testes_total
....................................................................................................................................................................CGACCGAGGCAGCTACATCGCG................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CCAAAGCGAGAAAGTAGGAAT...................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................GGACCTGGTGGTTGCGGTCCG............................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AGGAATGGTCGCCTTCGTTAG....................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CATCGTGGAAGTAGGAATGGT................................................... 21 3 8 0.25 2 0 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCAAGAGCGGCCCGAG............ 16 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................CCTGTTGGTTGCGGTCCGA.............................................................................................................................................. 19 3 20 0.15 3 0 0 0 0 0 0 0 0 2 0 0 1
.......................................................................................................................................................................CAGAGGCAGCCACATCGCG................................................................. 19 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................CAGCGCGGACATAGGAATG..................................................... 19 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................GGCCGAAAGCGGCCCGATA........... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0
............................................................AAGTTATTACCTCAGAAGAA........................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
...CCGGGCAGATTAACGAATT..................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:3478413-3478663 + dvi_3733 CAA---------------AACCCGTCTAATGGCTTAATC------TATGGCTGTAGGCCCATTAATGAGCCTGCCGTAAACTTC------AATAATGGTGGCTTCTACAATATGCCC--------------GCA------------CCACCAACGC----CAG--------CCTATG------------------------------------------------------------------------------------------------CAGGCGGCGGTGTTGCGGCTGGCGGCCTGTACAACGGCTGCTCGAGCCTGGAGCTG-------TCGCC--GTCGATGTCGCGCTTTCATCCTTACCAGCGGCAGGCATCC---------GATTTTTGCCAGTTCTCGCCGGGCTATGGCCG------GCAGTC
droMoj3 scaffold_6540:7779648-7779907 + CAA---------------AATTCGCTTAATGGCCTGATT------TACGGCCATACGCTCATCAATGAGCCCACAGTGAATTTC------AATAATGGCGGCTTCTATAACACCCAA--------------GCA------------GCAGCAGCACCACCGCCAATGGTTGCCTACGCCCAATGTGGTGCTGG---------------------------------------------------------------------------------------------------------CTTGTACAACGACTGCTCGAGCCTGGAAATGAATTCACCTTGCTCTGCGACG---CGTTTTCATCCCTACCAGCGGCAGACCTCC---------GATTTTGGATCGTATCCGCCGGGCTATGGCCA------ACAGTC
droGri2 scaffold_15110:19684912-19685120 - CAA---------------CACCTGCA------------------------------------------------------------------------------------------------------------------------ACAGCAGCACTATATGCAACTGCAGGCGGCACC--AGGGGGCGCTGGCCATTACCATCATCACAATCATCACCTGCTGCACAATCACCATGGGCATCATCATCATCATGGTGGCGCTGTAGTCATTGCTGGCAGTGGCGTCGGCACCGGTG-----------------------CCGGAGCAG-------CAGCTGCCGTCGTGTTG------------CAACAACAGCAGCAG------------------------------------------CA------GCAGCA
droWil2 scf2_1100000004943:5299512-5299750 + CT---------------------G-ATAATGGTGTACTC------TATGGTCGTGTACCGATAAATGAGCCATCTGTGAATTTCAATCTAAATAATAATGGTTTCTACAATCGTG---ATCCTTCAACTTTGTTGCCACACCAGCAACAGCAACAG---AGAC--------CCTTCG------------------------------------------------------------------------------------------------AGGGG-GCGATGTT-----------------------------------T------AATAGATC---GGCGGGTTTGTTGCGATATCATCCATACCAACAGCAACATCATGTGCCGCCGCAGTTTC--------TAAGACAGCAGCAGCCT------CCATAC
dp5 2:997546-997772 + CTG---------------CCCCTCGGGAATGGCTCGGTG------TACGGCCGCATGCCGATCCATGAGCCCGCCGTGAACTTC------AACAACGGCACCTTCTACAATGCAGCAGACCCTTCCA---TGGTG---CAGCA---GCAGCAGCAGCAGCGCC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------GGGTCCCAGTGG---------GGGGATG---CGCTACCATCCCTACCAGCAGGGGCAGCAT---------------------CAGCAGGATGCCTTCTACCAGCAGCAACAGCG
droPer2 scaffold_7:3783776-3783993 + CTG---------------CCCCTCGGGAATGGCTCGGTG------TACGGCCGCATGCCGATCCATGAGCCCGCCGTGAACTTC------AACAACGGCACCTTCTACAATGCAGCAGACCCTTCCA---TGGTG---CA------GCAGC--AGC----GCC--------CCTTCG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------GGGTCCCAGTGG---------GGGGATG---CGCTACCATCCCTACCAGCAGGGGCAGCAT---------------------CAGCAGGATGCCTTCTACCAGCAGCAACAGCG
droAna3 scaffold_13340:20878678-20878874 + C---------------------TGAATCATGGCTCGGTT------TTCGGTCGAACTCCGATTAATGAACCCTCAGTGAACTTT------GGCAACGGATCGTTTATGAATTC----------------------------------CAGGC-AGC----CGT--------CTTTCG------------------------------------------------------------------------------------------------TGGGG-GCCATGTT-----------------------------------GGGACCCCAAG---CCCAAGTTGGGATGAATCGGTATCATCCGTACCAGCAGCATCCCGCC------------------CAGCAACACCCTGACTTTTACCG------CCAAAG
droBip1 scf7180000396413:1525521-1525732 - C---------------------TGAACCATGGCTCGGTT------TTCGGTCGAAATCCGATAAATGAACCCTCGGTGAACTTT------GGCAATGGCTCGTTCATGAGTGCC-AG--------------GCA------------GCCGCAGCC------CA--------CATTCG------------------------------------------------------------------------------------------------TGGGT-GCCATGTT-----------------------------------GGGGCCCAATG---CCCAAGTTGGTATGAACCGGTACCATCCGTACCAGCAGCCACAGCCG---------CAGCACCCACAGCAGCATCACGACTTTTACCG------CCAAAG
droKik1 scf7180000302261:333121-333329 + C---------------------TAAACCATGGCTCAGTCTCAGCCTACGGTCGTGCTCCTATCAATGAACCCTCTGTGAACTTT------AACAATGGAGCCTTTTACCAGACTCCA--------------CCCC---A------ACCCAACCCCC----GAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATTTT-----------------------------------GGGGCCCAATGCCT---CCTATGGAATGCATCGCTACCATCCCTATCAGCAGCACCCCCAG------------------------CAGGAGGCCTTCTATGG------CCAACG
droFic1 scf7180000454073:3452536-3452738 - CAACGGCAGCAGCACCAGCAACTGAACAATGGCTCTGTT------TTCGGACGTACACCCATTAACGAACCCGCCGTGAACTTC------AACAATGGGTCATTTTACAATGCCCCA--------------GTG------------CCGAGATCGC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCGTTCT-----------------------------------GGGATCGAGCATAGCCTCCTCCGGAGTGCAGAGATACCATCCGTATCAGCAGCAACCGCA---------------------------------------------------GCA
droEle1 scf7180000491280:2171743-2171940 + T--------------------------AATGGCTCGGTT------TTCGGGCGAACGCCCATTAATGAACCCACCGTGAGCTTT------AACAACGGGTCATTCTACAATGTCCCA--------------GTT------------CCCAGTGGCC----AAC--------CCTACG------------------------------------------------------------------------------------------------TGGGT-GCCATTCT-----------------------------------GGGACCCAATCCATCCTCCGCCGCGATGCAGAGGTATCATCCGTATCAGCAGCAACCGCAT------------------------CCGGATGCCTTCTATCG------GCAACG
droRho1 scf7180000779336:78563-78760 - C--------------------------AATGGCTCTGTT------TTTGGGCGTACGCCCATTAATGAACCCACCGTGAACTTT------AACAACGGGTCATTCTATAATGCCCCT--------------ATT------------CCCAGAGCCC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGT-GCCATTCT-----------------------------------GGGACCCAATGCATCCTCCGCCGGGATGCAGAGGTTTCATCCGTATCAGCAGCAACAGCAT------------------------CCAGATGCCTTCTATCA------GCAACG
droBia1 scf7180000302113:1502708-1502913 - CGG------------------CTGGATAATGGCTCTCTT------TTCGGGCGCACGCCCATCAATGAGCCCACCGTGAACTTC------GGCAACGGCTCGTTCTACAATGCCCCA--------------CCG------------CAGAGATCCC----AGC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATCCT-----------------------------------GGGCTCCAGTACGCCCGCTGGCGGGATGCAGAGGTATCATCCCTATCAGCAGCAGCAGGGC------------------------CAGGACGCCTTCTACCG------CCAGAG
droTak1 scf7180000415765:303899-304101 + C---------------------TGAATAATGGCTCTGTT------TTCGGGCGTACGCCCATTAATGAACCCACCGTGAACTTC------GGCAATGGATCATTCTATACTTCACCA--------------CCG------------CAGAGAACCC----AAC--------CCTTCG------------------------------------------------------------------------------------------------TGGGT-GCCATTCT-----------------------------------GGGTCCAAATATGTCCTCTGGCGGGATGCAGAGATACCATCCGTATCACCAGCAACAGAAC------------------------CAGGATGCCTTCTATCG------CCAGAG
droEug1 scf7180000409555:371575-371780 + CAG------------------CTGAACAATGGCTCTGTT------TTCGGGCGTACGCCCATTAATGAACCTACTGTGAACTTT------AGCAATGGGTCATTCTATAATGGCCCA--------------CCA------------GTCAGAAACC----AAC--------CGTATG------------------------------------------------------------------------------------------------TGGGT-CCCATAAT-----------------------------------GGGGCCCAGTGTGTCCTCCGTTGGGATGCAAAGGTATCATCCGTATCACCAGCAACAGCCT------------------------CAGGATCCTTTCTATGG------CCAAAG
dm3 chr3R:25888934-25889128 + -----------------------------TGGCCCAGCT------TTTGGGCCAATGCCCATCAATGAACCCACTGTGAACTTT------GGCAACGGGTCATTCTACAATGGCCCT--------------GCT------------CCCGGAAGCC----AAC--------CCTTCG------------------------------------------------------------------------------------------------TGGGC-GCTATGCT-----------------------------------CGGCCCCAATATGTCCTCCACTGGGATGCAAAGGTACCATCCGTACCATCAGCAGCAGCCC------------------------CAGGACGCCTTCTATCG------CCAGAG
droSim2 3r:25235194-25235396 + C---------------------TGAGCAATGGCCCAGCT------TTTGGGCGAATGCCCATCAATGAACCCACTGTGAACTTT------GGCAACGGGTCATTCTACAATGGCCCT--------------GCT------------CCCGGAAGCC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATACT-----------------------------------CGGCCCCAATATGTCCTCCGCTGGGATGCAAAGGTACCATCCGTACCACCAGCAGCAGCCC------------------------CAGGACGCCTTCTACCG------CCAGAG
droSec2 scaffold_4:4734976-4735178 + C---------------------TGAGCAATGGCCCAGCT------TTTGGGCGAATGCCCATCAATGAACCCACTGTGAACTTT------GGCAACGGGTCATTCTACAATGGCCCT--------------GCT------------CCCGGAAGCC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATACT-----------------------------------CGGACCCAATATGTCCTCCGCTGGTATGCAAAGGTACCATCCGTACCACCACCAGCAGCCC------------------------CAGGACGCCTTCTACCG------CCAGAG
droYak3 3R:26818375-26818583 + CAG------------------TTGAGCAATGGCTCTGTT------TACGGGCGAATGCCCATTAATGAGCCCGCCGTGAACTTT------GGCAACGGGTCATTCTACAATGCCCCT--------------CCTG---C------GCCCAGAACGC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------TGGACGCAATGTGTCCTCTGCTGGGATGCAAAGGTACCATCCGTACCACCTGCAGCAGCCC------------------------CAGGACGCCTTCTACCA------CCAGAG
droEre2 scaffold_4820:2110642-2110853 - CAA---------------CAGCTGAGCAATGGCTCTGTT------TACGGGCGAATGCCCATTAATGAACCCACCGTGAACTTT------GGCAACGGGTCATTCTACAATGCCCCT--------------GCTG---C------CCCCAGAATCC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------TGGGCGCAATGTGTCCTCTGCCGGGATGCAAAGATACCATCCGTACCGCCAGCAGCAGCCC------------------------CAGGACGCCTTCTACCG------CCAGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAA---------------AACCCGTCTAATGGCTTAATC------TATGGCTGTAGGCCCATTAATGAGCCTGCCGTAAACTTC------AATAATGGTGGCTTCTACAATATGCCC--------------GCA------------CCACCAACGC----CAG--------CCTATG------------------------------------------------------------------------------------------------CAGGCGGCGGTGTTGCGGCTGGCGGCCTGTACAACGGCTGCTCGAGCCTGGAGCTG-------TCGCC--GTCGATGTCGCGCTTTCATCCTTACCAGCGGCAGGCATCC---------GATTTTTGCCAGTTCTCGCCGGGCTATGGCCG------GCAGTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................CGAGCCTGGAGCTG-------TCGCC--.............................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................C----CAG--------CCTATG------------------------------------------------------------------------------------------------CAGGCGGCGGTGTT.....................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GTACAACGGCTGCTCGAGCCT..................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GCCTGGAGCTG-------TCGCC--GTCGAT.......................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................C----CAG--------CCTATG------------------------------------------------------------------------------------------------CAGGCGGCGG.........................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................GAGCCTGCCGTAAACTTC------AATAATGGT.................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AG--------CCTATG------------------------------------------------------------------------------------------------CAGGCGGCGGTGTTGC...................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..................................................................GAGCCTGCCGTAAACTTC------AAT.......................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...........................................................CATTAATGAGCCTGCCGTAAACT..................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................CTACAATATGCCC--------------GCA------------CCACCAAC..........................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................G--------CCTATG------------------------------------------------------------------------------------------------CAGGCGGCGGTGTTGC...................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................C--GTCGATGTCGCGCTTTCATC.........................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................GC----CAG--------CCTATG------------------------------------------------------------------------------------------------CAGGCGGCGGTGTTGC...................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGCCAGTTCTCGCCGGG.....................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GCTGCTCGAGCCTGGAGCC............................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................GGCTGGCGGCCTGTACAACGGC.............................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................C----CAG--------CCTATG------------------------------------------------------------------------------------------------CAGGCGGCGGTGTTGC...................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................GCTTCTACAATATGCCC--------------GCA------------C.................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAA---------------AATTCGCTTAATGGCCTGATT------TACGGCCATACGCTCATCAATGAGCCCACAGTGAATTTC------AATAATGGCGGCTTCTATAACACCCAA--------------GCA------------GCAGCAGCACCACCGCCAATGGTTGCCTACGCCCAATGTGGTGCTGG---------------------------------------------------------------------------------------------------------CTTGTACAACGACTGCTCGAGCCTGGAAATGAATTCACCTTGCTCTGCGACG---CGTTTTCATCCCTACCAGCGGCAGACCTCC---------GATTTTGGATCGTATCCGCCGGGCTATGGCCA------ACAGTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................TTCGCTTAATGGCCTGATT------TACGGC.................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
.......................................................................................................................................................................................GTGGTGCTGG---------------------------------------------------------------------------------------------------------CTTGTACAAC................................................................................................................................2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................AGACCTCC---------GATTTTGGATCG................................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................C---------GATTTTGGATCGTATCCGCCGGGC....................2511.001000010
....................................................ATACGCTCATCAATGAGCCCACAGTG......................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........................................................CATCAATGAGCCCACAGTGA.....................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................TTGCTCTGCGACG---CGTTTT.............................................................................1911.001100000
...........................................................CATCAATGAGCCCACAGTG......................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................TCGCTTAATGGCCTGATT------TACGGCC................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..........................................................TCATCAATGAGCCCACAGTGAA....................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...................................................CATACGCTCATCAATGAGCCCACAGTGA.....................................................................................................................................................................................................................................................................................................................................................................2811.001100000
........................................................................................................CTATAACACCCAA--------------GCA------------GCAGC.............................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTATCCGCCGGGCTATGGC..............2211.001000010
......................................................................................................TTCTATAACACCCAA--------------GCA------------GCAG..............................................................................................................................................................................................................................................................................................2211.001100000
droGri2
CAA---------------CACCTGCA------------------------------------------------------------------------------------------------------------------------ACAGCAGCACTATATGCAACTGCAGGCGGCACC--AGGGGGCGCTGGCCATTACCATCATCACAATCATCACCTGCTGCACAATCACCATGGGCATCATCATCATCATGGTGGCGCTGTAGTCATTGCTGGCAGTGGCGTCGGCACCGGTG-----------------------CCGGAGCAG-------CAGCTGCCGTCGTGTTG------------CAACAACAGCAGCAG------------------------------------------CA------GCAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................CGGAGCAG-------CAGCTGCCGTCGTGTTG------------C......................................................................2611.00110
droWil2
CT---------------------G-ATAATGGTGTACTC------TATGGTCGTGTACCGATAAATGAGCCATCTGTGAATTTCAATCTAAATAATAATGGTTTCTACAATCGTG---ATCCTTCAACTTTGTTGCCACACCAGCAACAGCAACAG---AGAC--------CCTTCG------------------------------------------------------------------------------------------------AGGGG-GCGATGTT-----------------------------------T------AATAGATC---GGCGGGTTTGTTGCGATATCATCCATACCAACAGCAACATCATGTGCCGCCGCAGTTTC--------TAAGACAGCAGCAGCCT------CCATACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................C------TATGGTCGTGTACCGATAAATGAGC..............................................................................................................................................................................................................................................................................................................................................................................2612.00200020
.......................................................................................................................................................AACAG---AGAC--------CCTTCG------------------------------------------------------------------------------------------------AGGGG-GCGAT........................................................................................................................................................2512.00200110
....................................CTC------TATGGTCGTGTACCGATAAATGAGCC.............................................................................................................................................................................................................................................................................................................................................................................2911.00110000
...................................................CGTGTACCGATAAATGAGCC.............................................................................................................................................................................................................................................................................................................................................................................2011.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................TTC--------TAAGACAGCAGCAGCCT------CCATAC2611.00100010
...............................................................................................................CGTG---ATCCTTCAACTTTGT...............................................................................................................................................................................................................................................................................................................1911.00100010
.........................................................................................................................................................................................................................................................................................GATGTT-----------------------------------T------AATAGATC---GGCGGGTTTGTTG...................................................................................2811.00100100
.................................GTACTC------TATGGTCGTGTACC.........................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.................................................................................................................................................AACAGCAACAG---AGAC--------CCTTCG------------------------------------------------------------------------------------------------AGGGG-GCGA.........................................................................................................................................................3011.00100010
......................................C------TATGGTCGTGTACCGATAAATGAGCC.............................................................................................................................................................................................................................................................................................................................................................................2711.00110000
...........................................................................................................................................................................................................................................................................................TGTT-----------------------------------T------AATAGATC---GGCGGGT.........................................................................................2011.00100100
..............................................................AAATGAGCCATCTGTGAATT..................................................................................................................................................................................................................................................................................................................................................................2011.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................CGCAGTTTC--------TAAGACAGCAGCAGC..............2411.00101000
.....................................................................................................................................................................................................................................................................................................................................................................ATCATCCATACCAACAGCAA...........................................................2011.00100010
...........................................................GATAAATGAGCCATCTGTGAATTTC................................................................................................................................................................................................................................................................................................................................................................2511.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................ATCATGTGCCGCCGCAGTT.......................................1911.00100010
..........................................................CGATAAATGAGCCATCTGT.......................................................................................................................................................................................................................................................................................................................................................................1911.00100100
............................................................................................................................................................................................................................................................................................................................................................................ATACCAACAGCAACATCATGTGCCGCC.............................................2711.00100010
..........................................................................................................................................................................................................................................................................................ATGTT-----------------------------------T------AATAGATC---GGCGGGTTTGTTGC..................................................................................2811.00100100
.........................................................................................................................................................................................................................................................................................GATGTT-----------------------------------T------AATAGATC---GGCG............................................................................................1911.00100010
.............................................TATGGTCGTGTACCGATAAATGAGCC.............................................................................................................................................................................................................................................................................................................................................................................2611.00100010
........................................................................................................CTACAATCGTG---ATCCTTCAACTTTGT...............................................................................................................................................................................................................................................................................................................2611.00100010
............................................................................................................................................CCAGCAACAGCAACAG---AGAC--------.........................................................................................................................................................................................................................................................................2011.00100010
..............................................................AAATGAGCCATCTGTGAATTTC................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.............................................................................................................ATCGTG---ATCCTTCAACTTTGT...............................................................................................................................................................................................................................................................................................................2111.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCAGCAGCCT------CCATA.2011.00100010
........................................................................................................................................................ACAG---AGAC--------CCTTCG------------------------------------------------------------------------------------------------AGGGG-GCGAT........................................................................................................................................................2411.00100010
................................................................................................AATGGTTTCTACAATCGTG---ATCCTT........................................................................................................................................................................................................................................................................................................................2511.00101000
...........................................................................................................................................................................................................................................................................................TGTT-----------------------------------T------AATAGATC---GGCGG...........................................................................................1811.00100010
...............................................................AATGAGCCATCTGTGAATTTCAAT.............................................................................................................................................................................................................................................................................................................................................................2411.00101000
.......................................................TACCGATAAATGAGCCAT...........................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................................................AATGAGCCATCTGTGAATT..................................................................................................................................................................................................................................................................................................................................................................1911.00100010
dp5
CTG---------------CCCCTCGGGAATGGCTCGGTG------TACGGCCGCATGCCGATCCATGAGCCCGCCGTGAACTTC------AACAACGGCACCTTCTACAATGCAGCAGACCCTTCCA---TGGTG---CAGCA---GCAGCAGCAGCAGCGCC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------GGGTCCCAGTGG---------GGGGATG---CGCTACCATCCCTACCAGCAGGGGCAGCAT---------------------CAGCAGGATGCCTTCTACCAGCAGCAACAGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................GCCATGCT-----------------------------------GGGTCCCAGTGG---------GGG..........................................................................................2312.0020100100000
..........................GAATGGCTCGGTG------TACGGCCG...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................C-GCCATGCT-----------------------------------GGGTCCCAGTGG---------GGG..........................................................................................2411.0010000100000
.......................................................................................................................................................AGCAGCAGCGCC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-.............................................................................................................................................................2311.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTACCAGCAGCAACAGC.2011.0010000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGGATGCCTTCTACC.............1911.0010000100000
..................................................................................................................................................................C--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------GGGTC.............................................................................................................2511.0010000100000
....................................................................................................................................GTG---CAGCA---GCAGCAGCAGCAG.....................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
CTG---------------CCCCTCGGGAATGGCTCGGTG------TACGGCCGCATGCCGATCCATGAGCCCGCCGTGAACTTC------AACAACGGCACCTTCTACAATGCAGCAGACCCTTCCA---TGGTG---CA------GCAGC--AGC----GCC--------CCTTCG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------GGGTCCCAGTGG---------GGGGATG---CGCTACCATCCCTACCAGCAGGGGCAGCAT---------------------CAGCAGGATGCCTTCTACCAGCAGCAACAGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................GC--AGC----GCC--------CCTTCG------------------------------------------------------------------------------------------------TGGGC-.............................................................................................................................................................1913.003300000
....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGGATGCCTTCTACCAGC..........2213.003300000
................................................GGCCGCATGCCGATCCATGA................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droAna3
C---------------------TGAATCATGGCTCGGTT------TTCGGTCGAACTCCGATTAATGAACCCTCAGTGAACTTT------GGCAACGGATCGTTTATGAATTC----------------------------------CAGGC-AGC----CGT--------CTTTCG------------------------------------------------------------------------------------------------TGGGG-GCCATGTT-----------------------------------GGGACCCCAAG---CCCAAGTTGGGATGAATCGGTATCATCCGTACCAGCAGCATCCCGCC------------------CAGCAACACCCTGACTTTTACCG------CCAAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................GGATCGTTTATGAATTC----------------------------------CAGGC-AGC----CGT--------.........................................................................................................................................................................................................................................................................2811.001010000
...........................................................................GTGAACTTT------GGCAACGGATCGTTC...........................................................................................................................................................................................................................................................................................................................................2411.001010000
.........................ATCATGGCTCGGTT------TTCGGT.................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................................TCGAACTCCGATTAATGAACCCTCAGT.......................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.............................................................................................................ATTC----------------------------------CAGGC-AGC----CGT--------CTTTCG------------------------------------------------------------------------------------------------TGGG...............................................................................................................................................................2511.001010000
.............................................................................................................................................................................TTCG------------------------------------------------------------------------------------------------TGGGG-GCCATGTT-----------------------------------GGGACCCCAA........................................................................................................2711.001100000
..............................................................................................................TTC----------------------------------CAGGC-AGC----CGT--------CTTTCG------------------------------------------------------------------------------------------------TGGG...............................................................................................................................................................2411.001100000
..........................................................................................................................................................................................................................................................................................ATGTT-----------------------------------GGGACCCCAAG---CCCAAGT.............................................................................................2311.001001000
...........................CATGGCTCGGTT------TTCGGTCGAACTCC.........................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...............................................................................ACTTT------GGCAACGGATCGTTTAT.........................................................................................................................................................................................................................................................................................................................................2211.001010000
.........................................................................................................ATGAATTC----------------------------------CAGGC-AGC----CGT--------CTTTC....................................................................................................................................................................................................................................................................2411.001010000
...................................................................AACCCTCAGTGAACTTT------GGC.......................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................................................................................................................................ATCATCCGTACCAGCAGCATCCC........................................................2311.001100000
...................................................................................................................................................................................................................................................................................................................................................................GTATCATCCGTACCAGCAGC.............................................................2011.001010000
...............................................CGGTCGAACTCCGATTAATGAACCCTCA.........................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................GTTTATGAATTC----------------------------------CAGGC-A..........................................................................................................................................................................................................................................................................................1811.001010000
.............................................................................GAACTTT------GGCAACGGATCGTTT...........................................................................................................................................................................................................................................................................................................................................2211.001010000
..................................................................................................................................................................................................................................................................................................................................GGGACCCCAAG---CCCAAGTTGG..........................................................................................2111.001010000
...........................................................................GTGAACTTT------GGCAACGGATC...............................................................................................................................................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................GT--------CTTTCG------------------------------------------------------------------------------------------------TGGGG-GCCATGTT-----------------------------------GGGA..............................................................................................................2511.001100000
droBip1
C---------------------TGAACCATGGCTCGGTT------TTCGGTCGAAATCCGATAAATGAACCCTCGGTGAACTTT------GGCAATGGCTCGTTCATGAGTGCC-AG--------------GCA------------GCCGCAGCC------CA--------CATTCG------------------------------------------------------------------------------------------------TGGGT-GCCATGTT-----------------------------------GGGGCCCAATG---CCCAAGTTGGTATGAACCGGTACCATCCGTACCAGCAGCCACAGCCG---------CAGCACCCACAGCAGCATCACGACTTTTACCG------CCAAAGSizeHit CountTotal NormTotal
No Reads
droKik1
C---------------------TAAACCATGGCTCAGTCTCAGCCTACGGTCGTGCTCCTATCAATGAACCCTCTGTGAACTTT------AACAATGGAGCCTTTTACCAGACTCCA--------------CCCC---A------ACCCAACCCCC----GAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATTTT-----------------------------------GGGGCCCAATGCCT---CCTATGGAATGCATCGCTACCATCCCTATCAGCAGCACCCCCAG------------------------CAGGAGGCCTTCTATGG------CCAACGSizeHit CountTotal NormTotal
No Reads
droFic1
CAACGGCAGCAGCACCAGCAACTGAACAATGGCTCTGTT------TTCGGACGTACACCCATTAACGAACCCGCCGTGAACTTC------AACAATGGGTCATTTTACAATGCCCCA--------------GTG------------CCGAGATCGC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCGTTCT-----------------------------------GGGATCGAGCATAGCCTCCTCCGGAGTGCAGAGATACCATCCGTATCAGCAGCAACCGCA---------------------------------------------------GCASizeHit CountTotal NormTotal
No Reads
droEle1
T--------------------------AATGGCTCGGTT------TTCGGGCGAACGCCCATTAATGAACCCACCGTGAGCTTT------AACAACGGGTCATTCTACAATGTCCCA--------------GTT------------CCCAGTGGCC----AAC--------CCTACG------------------------------------------------------------------------------------------------TGGGT-GCCATTCT-----------------------------------GGGACCCAATCCATCCTCCGCCGCGATGCAGAGGTATCATCCGTATCAGCAGCAACCGCAT------------------------CCGGATGCCTTCTATCG------GCAACGSizeHit CountTotal NormTotal
No Reads
droRho1
C--------------------------AATGGCTCTGTT------TTTGGGCGTACGCCCATTAATGAACCCACCGTGAACTTT------AACAACGGGTCATTCTATAATGCCCCT--------------ATT------------CCCAGAGCCC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGT-GCCATTCT-----------------------------------GGGACCCAATGCATCCTCCGCCGGGATGCAGAGGTTTCATCCGTATCAGCAGCAACAGCAT------------------------CCAGATGCCTTCTATCA------GCAACGSizeHit CountTotal NormTotal
No Reads
droBia1
CGG------------------CTGGATAATGGCTCTCTT------TTCGGGCGCACGCCCATCAATGAGCCCACCGTGAACTTC------GGCAACGGCTCGTTCTACAATGCCCCA--------------CCG------------CAGAGATCCC----AGC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATCCT-----------------------------------GGGCTCCAGTACGCCCGCTGGCGGGATGCAGAGGTATCATCCCTATCAGCAGCAGCAGGGC------------------------CAGGACGCCTTCTACCG------CCAGAGSizeHit CountTotal NormTotal
No Reads
droTak1
C---------------------TGAATAATGGCTCTGTT------TTCGGGCGTACGCCCATTAATGAACCCACCGTGAACTTC------GGCAATGGATCATTCTATACTTCACCA--------------CCG------------CAGAGAACCC----AAC--------CCTTCG------------------------------------------------------------------------------------------------TGGGT-GCCATTCT-----------------------------------GGGTCCAAATATGTCCTCTGGCGGGATGCAGAGATACCATCCGTATCACCAGCAACAGAAC------------------------CAGGATGCCTTCTATCG------CCAGAGSizeHit CountTotal NormTotal
No Reads
droEug1
CAG------------------CTGAACAATGGCTCTGTT------TTCGGGCGTACGCCCATTAATGAACCTACTGTGAACTTT------AGCAATGGGTCATTCTATAATGGCCCA--------------CCA------------GTCAGAAACC----AAC--------CGTATG------------------------------------------------------------------------------------------------TGGGT-CCCATAAT-----------------------------------GGGGCCCAGTGTGTCCTCCGTTGGGATGCAAAGGTATCATCCGTATCACCAGCAACAGCCT------------------------CAGGATCCTTTCTATGG------CCAAAGSizeHit CountTotal NormTotal
No Reads
dm3
-----------------------------TGGCCCAGCT------TTTGGGCCAATGCCCATCAATGAACCCACTGTGAACTTT------GGCAACGGGTCATTCTACAATGGCCCT--------------GCT------------CCCGGAAGCC----AAC--------CCTTCG------------------------------------------------------------------------------------------------TGGGC-GCTATGCT-----------------------------------CGGCCCCAATATGTCCTCCACTGGGATGCAAAGGTACCATCCGTACCATCAGCAGCAGCCC------------------------CAGGACGCCTTCTATCG------CCAGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................CTCCACTGGGATGCAAAGGTA..............................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................AATGAACCCACTGTGAACTTT------GGC.......................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................CCTCCACTGGGATGCAAAG.................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................GCAACGGGTCATTCTACA.......................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GCTATGCT-----------------------------------CGGCCCCAATATGTC...................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................ATGTCCTCCACTGGGATGCAAAG.................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................CCTCCACTGGGATGCAAAGGT...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TGCAAAGGTACCATCCG.......................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ACCATCCGTACCATCAGC.............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TATGTCCTCCACTGGGATG......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCC------------------------CAGGACGCCTT..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CCCAATATGTCCTCCACTGG..........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................ATGTCCTCCACTGGGATGC.....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GAACTTT------GGCAACGGGT................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C---------------------TGAGCAATGGCCCAGCT------TTTGGGCGAATGCCCATCAATGAACCCACTGTGAACTTT------GGCAACGGGTCATTCTACAATGGCCCT--------------GCT------------CCCGGAAGCC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATACT-----------------------------------CGGCCCCAATATGTCCTCCGCTGGGATGCAAAGGTACCATCCGTACCACCAGCAGCAGCCC------------------------CAGGACGCCTTCTACCG------CCAGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................CTGTGAACTTT------GGCAACGG..................................................................................................................................................................................................................................................................................................................................................1914.00402200000000000000
....................................................................ACCCACTGTGAACTTT------GGCAACGG..................................................................................................................................................................................................................................................................................................................................................2414.00400400000000000000
.........................................................................CTGTGAACTTT------GGCAACG...................................................................................................................................................................................................................................................................................................................................................1812.00201100000000000000
.....................................................................CCCACTGTGAACTTT------GGCAACGGGTC...............................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
.........................................................................CTGTGAACTTT------GGCAACGGGT................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
............................................................................................................................................................................CTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATACT-----------------------------------C.................................................................................................................1911.00101000000000000000
...........................................................CATCAATGAACCCACTGTGAACTTT------GG........................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................C------------------------CAGGACGCCTTCTACCG------CCAGAG2411.00101000000000000000
..................................................GCGAATGCCCATCAATGAACCCACT.........................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000100000
...........................................................................GTGAACTTT------GGCAACGGGTC...............................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.....................................................................................................ATTCTACAATGGCCCT--------------GCT------------CCCGGAAGC.........................................................................................................................................................................................................................................................................................2811.00100000000000100000
.........................................................................CTGTGAACTTT------GGCAACGGGTC...............................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
......................................................................CCACTGTGAACTTT------GGCAACGGGTC...............................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..................................................................GAACCCACTGTGAACTTT------GGCAACGGGTC...............................................................................................................................................................................................................................................................................................................................................2911.00101000000000000000
droSec2
C---------------------TGAGCAATGGCCCAGCT------TTTGGGCGAATGCCCATCAATGAACCCACTGTGAACTTT------GGCAACGGGTCATTCTACAATGGCCCT--------------GCT------------CCCGGAAGCC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATACT-----------------------------------CGGACCCAATATGTCCTCCGCTGGTATGCAAAGGTACCATCCGTACCACCACCAGCAGCCC------------------------CAGGACGCCTTCTACCG------CCAGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................ATGCAAAGGTACCATCCGT......................................................................1911.0010010
......................................................................................................................................................................................................................................................................................................................................................................CCATCCGTACCACCACCAGC..........................................................2011.0010010
.........................................................................CTGTGAACTTT------GGCAACGGGTC...............................................................................................................................................................................................................................................................................................................................................2211.0010010
.......................................................................................................TCTACAATGGCCCT--------------GCT------------CCCGGAAG..........................................................................................................................................................................................................................................................................................2511.0010010
..........................................................................................................................................................................................................................................................................................ATACT-----------------------------------CGGACCCAATATGT....................................................................................................1911.0010010
droYak3
CAG------------------TTGAGCAATGGCTCTGTT------TACGGGCGAATGCCCATTAATGAGCCCGCCGTGAACTTT------GGCAACGGGTCATTCTACAATGCCCCT--------------CCTG---C------GCCCAGAACGC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------TGGACGCAATGTGTCCTCTGCTGGGATGCAAAGGTACCATCCGTACCACCTGCAGCAGCCC------------------------CAGGACGCCTTCTACCA------CCAGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................CCTCTGCTGGGATGCAAAG.................................................................................1914.00403000100000
..........................................................................................................................................................GC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------TGGAC.............................................................................................................2912.00200200000000
.....................................................................................................................................................................................................................................................................................................................................................................ACCATCCGTACCACCTGCAGC..........................................................2112.00200110000000
.......................................................................................................................................................................................................................................................................................................................................GCAATGTGTCCTCTGCTGGGATGC.....................................................................................2412.00200000020000
.......................................................................CGCCGTGAACTTT------GGCAACGGGTC...............................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.......................................................................................................................................................................................................................................................................................................................................GCAATGTGTCCTCTGCTGGGA........................................................................................2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................GACGCAATGTGTCCTCTGCTGG..........................................................................................2211.00101000000000
......................................................................CCGCCGTGAACTTT------GGCAACGGGTC...............................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.......................GAGCAATGGCTCTGTT------TACGGGCGAATGC..........................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000
.......................GAGCAATGGCTCTGTT------TACGGGCGAAT............................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
.......................................................................................................................................................................................................................................................................................................................................GCAATGTGTCCTCTGCTGGGATGCA....................................................................................2511.00100010000000
........................................................................................................................................................................................................................................................................................................................................CAATGTGTCCTCTGCTGGGATGC.....................................................................................2311.00100000010000
..........................................................................................................................................................................................................................................................................................................................................ATGTGTCCTCTGCTGGGATGCAAA..................................................................................2411.00100100000000
........................................................GCCCATTAATGAGCCCGCCGT.......................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.......................................................................................................................................................AACGC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------TG................................................................................................................2911.00100100000000
................................................................................................................................................................................................................................................................................................................................................CCTCTGCTGGGATGCAAAGGTA..............................................................................2211.00101000000000
.AG------------------TTGAGCAATGGCTCTGTT------TACGGGC................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
...................................................................AGCCCGCCGTGAACTTT------GGCAACGGGT................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................ACCACCTGCAGCAGCCC------------------------CAG..........................2011.00101000000000
.........................................................................................................................................................................................................................................................................................................................................AATGTGTCCTCTGCTGGGATGC.....................................................................................2211.00100000010000
..............................................................................................................................................................................TTG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------TGGACGCAATGT......................................................................................................2811.00100000010000
........................................................................GCCGTGAACTTT------GGCAACGG..................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.....................................................................................................ATTCTACAATGCCCCT--------------CCTG---C------GCCCA..............................................................................................................................................................................................................................................................................................2611.00100000010000
..........................CAATGGCTCTGTT------TACGGG.................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.................................................................................................................................................................................................................................................................................TGGGC-GCCATGCT-----------------------------------TGGACGCAATGTGTC...................................................................................................2811.00100000010000
..........................................................................CGTGAACTTT------GGCAACGGGTC...............................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEre2
CAA---------------CAGCTGAGCAATGGCTCTGTT------TACGGGCGAATGCCCATTAATGAACCCACCGTGAACTTT------GGCAACGGGTCATTCTACAATGCCCCT--------------GCTG---C------CCCCAGAATCC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------TGGGCGCAATGTGTCCTCTGCCGGGATGCAAAGATACCATCCGTACCGCCAGCAGCAGCCC------------------------CAGGACGCCTTCTACCG------CCAGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................GATGCAAAGATACCATCCGTAC....................................................................2212.0020200000
.......................................................................................................................................................................................................................................................................................................................................GCAATGTGTCCTCTGCCGG..........................................................................................1912.0021100000
..............................................................................................................................................................................................................................................................................................................................................GTCCTCTGCCGGGATGCAAA..................................................................................2011.0010001000
...................................................................................................................................................................................................................................................................................................................................................................ATACCATCCGTACCGCCAGC.............................................................2011.0011000000
...........................AATGGCTCTGTT------TACGGGCGAATGCC.........................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
................................................................ATGAACCCACCGTGAACTTT------GG........................................................................................................................................................................................................................................................................................................................................................2211.0010001000
..................................................GCGAATGCCCATTAATGAACC.............................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
........................................................................................................................................................ATCC----AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCA.........................................................................................................................................................2211.0010100000
.......................GAGCAATGGCTCTGTT------TACGGGC................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
..........................................................................................................................................................................................................................................................................................................................................ATGTGTCCTCTGCCGGGATG......................................................................................2011.0010001000
..................................................................................................................................................................................................................................................................................................................................................................GATACCATCCGTACCGCCAGCAGC..........................................................2411.0010100000
................................................................................................................................................................AAC--------CCTTTG------------------------------------------------------------------------------------------------TGGGC-GCCATGCT-----------------------------------TGG...............................................................................................................2511.0010001000
..................................................................................................................................................................................................................................................................................................................................................................GATACCATCCGTACCGCCAGC.............................................................2111.0010100000
.............................................................................GAACTTT------GGCAACGGGTCATT............................................................................................................................................................................................................................................................................................................................................2111.0010000100
.......................................................................CACCGTGAACTTT------GGCAAC....................................................................................................................................................................................................................................................................................................................................................1930.3310100000

Generated: 05/16/2015 at 09:04 PM