ID:

dvi_3732

 Coordinate:

scaffold_12855:3469190-3469340 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.3 -23.4 -23.4

Flybase annnotation

CDS [Dvir\GJ10783-cds]; exon [dvir_GLEANR_10684:1]; intron [Dvir\GJ10783-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAAGCAACGGAGCGCCGCTGCCGCTGCTGCAGCGACGTTCGCGTCAAGCGCCAACGTCCCTTGTCAACGCTGGAGACAAGTCGCCGCCCGCTGCTGCTGCAGGCGCTGCCTTGACAGCCAGCGGCAAGCCTAAGGAGAAACGAAGGTGAGTTATGATCATCCTAATTTGAAATCCCCCACACCTTTTTCTGCCAGATAGACTAATAAGAAATCTACGCTCCTGCCATGTGATCTCTGTTGGATGGGCTGT
***************************************************************************......((.((((..(((((((((((((((...))).)).))).)))))))..))....)).)).......********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V053
head
 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060670
9_testes_total
 M027
male body		 SRR060678
9x140_testes_total
 V116
male body		 GSM1528803
follicle cells		 SRR060660
Argentina_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060655
9x160_testes_total
 SRR060674
9x140_ovaries_total
 SRR060689
160x9_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 SRR1106729
mixed whole adult body
.................................................................................................................................CCTAAAGAGTAACGGAGG........................................................................................................ 18 3 20 2.95 59 0 0 18 21 3 2 1 1 0 0 3 0 5 0 3 0 0 0 0 1 1 0
................................................................................................................................GCCTAAGGAGAAACGAAG......................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AAAGCAACGGAGCGCCGCTGC..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CGGAGCACCGGTGCCGCTG................................................................................................................................................................................................................................ 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATACGCTCCTGCCATGTGATC................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GACAAGTCGCCGCCCGCTG............................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GACAGCCAGCGGAAAGCCTAAGGAG................................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CGGAGCACCGGTGACGCTGCTG............................................................................................................................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATGTGATCTCTGTTGGATGGG.... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TGCTGCAGCGACGTCGTCGTCAAGC......................................................................................................................................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GCTGCTGCAGGCGCTGCCT........................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GCCTTGACAGCCAGCGGAAAGCC........................................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGATCGCTCTTGGTTGGGCT.. 20 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GCGCTACACTGACAGCCAGCG............................................................................................................................... 21 3 4 0.50 2 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0
..........GAGCGTCGCTGCCGCTGCTGC............................................................................................................................................................................................................................ 21 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........CGGAGCACCGGTGCCGCTGCCG............................................................................................................................................................................................................................. 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CGGAGCACCGGTGACGCTGC............................................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CGGAGCACCGGTGCCGTTGC............................................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AAAAGCTACGGGGAGCCGC........................................................................................................................................................................................................................................ 19 3 13 0.23 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0
.................................................................................................................................CCTAAGGAGTAACGGAGGC....................................................................................................... 19 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........CGAAGCACCGTTGCCGCTGCTG............................................................................................................................................................................................................................. 22 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CAGGTGAGTTTTGATGATCC........................................................................................ 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................ACAAGCCGCCGCCAGCTCCT........................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CAGCAGCGATGTTCGGGTC............................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................CCTAAGAAGTAACGGAGG........................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTTCGTTGCCTCGCGGCGACGGCGACGACGTCGCTGCAAGCGCAGTTCGCGGTTGCAGGGAACAGTTGCGACCTCTGTTCAGCGGCGGGCGACGACGACGTCCGCGACGGAACTGTCGGTCGCCGTTCGGATTCCTCTTTGCTTCCACTCAATACTAGTAGGATTAAACTTTAGGGGGTGTGGAAAAAGACGGTCTATCTGATTATTCTTTAGATGCGAGGACGGTACACTAGAGACAACCTACCCGACA
*********************************************************************************************************......((.((((..(((((((((((((((...))).)).))).)))))))..))....)).)).......*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060685
9xArg_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 GSM1528803
follicle cells		 SRR060662
9x160_0-2h_embryos_total
 V053
head
 M047
female body
............................................................................TGTTCAGCCGAGGGTGACGA........................................................................................................................................................... 20 3 1 2.00 2 1 0 1 0 0 0 0
..................................................................TTGCGACCTCTGTTCAGCGGC.................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................TGCGACCTCTGTTCAGCGGC.................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................TGTGGAAAAAGAAACTCTATC................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0
..................................................CGGCTGAAGGGAACAGTT....................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 1 0 0 0
....................................................................CCGACCTCTGTTCAACGACGG.................................................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 0 1 0
..........................................................................TCCTTACAGCGGCGGGCGAC............................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 1
....................................................................ACGACCTGTGTTCAGCGACGG.................................................................................................................................................................. 21 3 13 0.08 1 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................CGGACGGTGCACTAGAGAA............. 19 3 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:3469140-3469390 + dvi_3732 AAAAGCAA------CGGAGCGCC------G---CTGCCGCTGCTG------------CA---GCGACG---------TTCGCGTCAAGCGCCAACGTCCCTT---------------------------------------------GTCAACGCTGGAGACAA------------------------GTCGCCGCCC------------GCTGC------TGCTGCAGGCGCTGCCTTGACAGCCAGCGGCAAGCCTAAGGAGAAACGAAGGTGAGTTAT-G----AT-CATCCTAA----T-----------------------------TTGAAAT---------------------CC--CCCACACCTT---------TTTCTGCCAGATAGACTA-A------------TAAG-AAATC-TAC---------GCTC---------------CTGCC----------------------------------------------------------------------------ATGTGATCTCT-GTTGGATGGGCTG-T
droMoj3 scaffold_6540:7770057-7770326 + AAAAGCAA------CGGAGCGCC------G---CTGCCGCTGCTA------------CA---GCAACG---------TCG-------------------ACT---------------------------------------------GTCAGCGCTGGAGCCAAGTCACCGACCGCTGCTGCTGCTGGCGGTGT------TGTTGCTTCAGCAGC------AGCAGCAGGTATTGCCTTGACCGCAAGCGGCAAGCCTAAGGAGAAACGAAGGTGAGTTAT-G----GT-CACCCCAA----T---AG-----------------------T----TGGACTAATTTTGTCAACTCTCTTACCCCTCACT------AACA--------G--------CCAA-A------------TAAA-TAATC-TAA---------GCTC---------------CTGCC----------------------------------------------------------------------------ATGTGATCT-G-TCTGTCTGATGGG-C
droGri2 scaffold_14906:6150635-6150903 + AAAAGCAA------CGGAGCGCC------G---CTGCCGCTGCAA------------CAGGAGCAACG---------TCGACGTCAAT-----------CT-----------CGTCC---------------------------------AAGGCTAGAACCAAGTCGACATCAGCTGCTGCTTCTGATTC------------------------------TGCTACAGGTGTGGGTTTGACTGCCAACGGCAAGCCTAAGGAGAAACGAAGGTGAGTTGATG----GT-CACCCTAA----T---CG------AT--------CTCAT-------------------------------GCTCCCCACTCCCTCCAACATTCCCCCTGCCGAATA-------GGT--------------AT-TC-AAAATTGACGACGCTC---------------CTGCC----------------------------------------------------------------------------ATGTGATCT-G--TCGGATGGGCTG-T
droWil2 scf2_1100000004943:5287856-5288017 + AAAATCAG------CGCAATGGCGTGATCG---CTG------CTG------------------CATCTTCATCTCCATCGTCAT-------------------------------------------------------CAAGCT---------CT------------------------------GCCGCCAAGAAT------------TCAGGAGCATCCTCTGGAGGATCGGGACTAACTGCCAGCGGCAAGCCCAAGGAGAAACGCAGGTAAGTGTG-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCT---CTTAGCTGGATTT-T
dp5 2:993203-993394 + AAAAACAG------CGTAACGCC------G---CCGACCCCGCTG------------CT---GCTTCT---------------TCGAGCATCT-CTGCCACT---------------------------------------------GGCAGCGC------------------------------------GCT------AGCCAAGGCTTCTCC------AGGATCAGGATCGAACCTGACTGCCAGCGGCAAGCCCAAGGAGAAACGCAGGTGAGTCCC-C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCGTCCCGCC------------------------------C-------------AAT------CACCCACC--------------AATCGGATGT-C-TTTAAATCAGTTG-C
droPer2 scaffold_7:3779490-3779681 + AAAAACAG------CGTAACGCC------G---CCGACCCCGCTG------------CT---GCTTCT---------------TCGAGCATCT-CTGCCACT---------------------------------------------GGCAGCGC------------------------------------GCT------AGCCAAGGCTTCTCC------AGGATCAGGATCGAACCTGACTGCCAGCGGCAAGCCCAAGGAGAAACGCAGGTGAGTCCC-C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCGTCCCGCC------------------------------C-------------AAT------CACCCACC--------------AATCGGATGT-C-TTTAAATCAGTTG-C
droAna3 scaffold_13340:20874368-20874608 + AAAAACAAAAGCAGTCGG------CGATCG---CTCAATCCTCCT------------------------------------CTT----------------------------CGTCGACCACCCTTACTCCACCATCTT---CCTCT---------------------------------------GGATCCTCACC---------------CGT------CCTGGGAAAATCGAACCTCACGGCCAGCGGAAAACCCAAGGAGAAACGCAGGTGAGTCAT-A----GATC-----GGT------TAGGGTTAACTTTATATTCCTATAGG-C----------------------------------------------------------------------TGG--------------AG-TC--------------------------------CAC-------------------------------CC-------------CAT--ACCCGCCCCCC-----CGATATGCTCAATTGGATGT-T-TTTAGATCAGCGG-T
droBip1 scf7180000396413:1531041-1531290 - AAAAGCAAAAGCAGTCGG------CAATAG---CTGCATCCACCT---C------CT------CGTC---CTCCT------CAT----------------------------CGTCGACCACCA---CCTCGCCATCTTCCT---CC---------------------------------------GGATCCGGATCA------------CCCGT------CCTGGTCAAATCGAACCTCACGGCCAGCGGCAAGCCCAAGGAGAAACGCAGGTGAGTCAT-A----GATCTA---GA----TGTTAG------AT--------CTATA---------------------------------------------------------------------G-ACCTGG--------------AG-TC-----------------------------------------------------CCTATACCCCCACCC-------------TAT-ACACCCTAC-----------CATGCTCTATTGGATCT-TTTTTAGATCAGAGG-T
droKik1 scf7180000302261:327876-328084 + AGAAGCAA------CTGG------CGGCTG---CTGCATCCACCT------------CA---ACATCT----------------------------------------------TCCTCGGCCT---C---ATCATCGGCCTCTCCT---------------------------------------GTTTCCTCCGAT------------TCCTC------GGCCTCCAAATCCAATCTCACGGCCAGCGGAAAGCCAAAGGAGAAACGAAGGTGAGTGGA-A----TG-------CA----A-----------------------------C----------------------------------------------------------------------C---CAAATTACACTGT------------------------------------------------------------------GACCATA-------------TCC-ATTGCGATCC------------------CTCGAATAT-ATTTTAGATCAATTGCT
droFic1 scf7180000454073:3457463-3457692 - AGAAGCAAACCGAGTCCG------TGGCTT---CTAACTCCTCC------------------------------T------CTT----------------------------CGATTTCCTCCT---CCCCACCGTCTTCGTCCTCT---------------------------------------GGCTCCCCATCT------------TCTGC------CGCCCCCAAATCCAATCTCACGGCCAGCGGAAAACCAAAGGAGAAGCGAAGGTGAGTCAC-A----CT-------AC----------------------------------C------------------------------------------------------------------------------------AATAA-TC-CGA---------TCCC---------------------------------------------TTAAACGATAACCTAATCCAATA-ATACCATC--------TGAAGCGCTCAAATGGATCC-A-AT----GGGCCTG-C
droEle1 scf7180000491280:2165593-2165845 + AGAAGCAG---CAATCGG------TA---------------------------------------------TCCT------CAT----------------------------CGTATTCCTCCT---CCCCACCATCTTCGTCTTCTAGT------------------------------------GGTTCCCT------CTCACCACCCTCTGC------CGCCCCAAAATCCAATCTCACGGCCAGCGGTAAACCAAAGGAGAAACGAAGGTGAGTCAG-A----CA-CAAACAAA----T-----------------------------CCTACAT----------------------------------------------------------AGCT--TGC-----------AATAA-TT-CGA---------TCTC---------------------------------------------CTGACCAATACACCCATCCAACA-ATCCAATCCG---ATCCGTAGTACTCCATTGGATCT-G-CTTAGATCACTTG-T
droRho1 scf7180000779336:86712-86958 - AGAAGCAA------TCGG------TGGCTGCCACCGACTCCTCCT------------------------------------CTT----------------------------CTTATTCCACCT---CTTCACCCTCTTCGTCTTCT---------------------------------------GGCTCTCT------TTCATCATCCCCTGC------CGCCCCAAAATCCAATCTCACGGCTAGCGGTAAACCAAAGGAGAAACGAAGGTGAGTCGG-A----CA-------GATAAAC----------------------------------AT----------------------------------------------------------GCCA-T------------CAAA-AAATC-AGA---------TCCC---------------------------------------------CTGACCAATACACCCATCCAATA-ATCCGATC--------CGTAGTGCTCCCTTGGATCT-G-CTCAGATCAC----T
droBia1 scf7180000302113:1508085-1508338 - AGAAGCAG------TCGG------TGGCCA---CCAACTCCGCCTCCTC---CTCCG------CCTC---ATCCT------CCT----------------------------CGTACTCCTCCT---CCCCACCATCTTCGTCTGCG---------------------------------------GGATCCCCATCT------------TCGGC------GGCCCCAAAGTCCAATCTCACGGCCAGCGGCAAACCGAAGGAGAAACGAAGGTAAGTCAT-AGTGATC-------GATAG------------------------------A----TGA----------------------------------------------------------GCTA-T------------CTGATTA-TCCGCA---------TACCCTGACCCAGAGTATCT--------------------------------------------------------CGATCCCCCAT-----CCGAATCCATCGGATCT-G-CCTAGATCAG----T
droTak1 scf7180000415765:297992-298261 + AGAAGCAA------TCGG------TGGCCA---CCAATTCCTCCTCCTC------CT------CC---------T------CCT----------------------------CGTTTTCTTCCT---CCCCACCATCTTCGTCTTCT---------------------------------------GGCTCCCCATCTTCTTCCTCATCTTCGGC------AGCCCCAAAATCCAATCTCACGGCCAGCGGCAAACCAAAGGAGAAACGAAGGTGAGTCAT-GTGGATC-------GAAAG------------------------------A----TAT----------------------------------------------------------AGTA-C------------TGGATAA-TCCTGA---------TACCCAGACCCACAGTATCCC-------------------------------------------ATTCAATT-ATGCGATCCCCCGAT-TGTA--ATTCCATCGGCTCT-G-CTTAAATCGC-----
droEug1 scf7180000409555:366545-366784 + AAAACCAATCGCAGTCGG------TGGCCA---CGAGCTCCTCCACCTC------CT------CC---------C------CCT----------------------------CGTTTTCAACCT---CGCCATCATCTTCGTCTTCT---------------------------------------GGCTCTCCATCTACCTCCTCATCCTGCGC------GGCCCCAAAATCCAATCTCACGGCCAGCGGCAAACCGAAGGAGAAGCGAAGGTGAGTCAC-T----TG-------AA----C-----------------------------C------------------------------------------------------------------------------------------------------------------------------GCTGTACTGTCCACCAATCCGAATATC-TTGATC---------------G-AATTCC----------------------ATCCGATTT-G-CTTAGATCAGATG-T
dm3 chr3R:25884690-25884924 + AGAAGCAGTCCCAAGCGG------TGGTCA---CCAACACCTCCGCCTCCTCCTCCT------CCTG---TTCCT------CTT----------------------------CGTTCTCGTCCT---CCCCACCATCTTCGTCCGTT---------------------------------------GGCTCCCCATCT------------CCTGG------CGCCCCAAAAACCAATCTCACGGCCAGCGGCAAACCAAAGGAGAAAAGAAGGTGAGTCAC-A----CG-------AA----T-----------------------------C----------------------------------------------------------------------TGC--------------AA-TC-----------------------------------------------------CGGATACCGCCGATC-------------TAC-AATCCCATCCGTT--------------GGTTGGATCT-G-CCTAGATCGC-----
droSim2 3r:25230890-25231124 + AGAAGCAGTCCCAAGCGG------TGGCCA---CCAACTCCTCCGCCTCCTCCTCCT------CCTG---CTCCT------CCT----------------------------CGTTCTCGGCCT---CCCCACCATCTTCGTCCGTT---------------------------------------GGCTCCCCATCT------------CCTGG------CGCCCCAAAAACCAATCTCACGGCCAGCGGCAAACCAAAGGAGAAACGAAGGTGAGTCCC-A----CG-------AG----T-----------------------------C----------------------------------------------------------------------CGC--------------AA-TC-----------------------------------------------------CGGATACCGCCGATC-------------TAC-AATCCCATCCCCT--------------GGTTGGATCT-G-CCTAGATCGC-----
droSec2 scaffold_4:4730666-4730906 + AGAAGCAGTCCCAAGCGG------TGGCCA---CCAACTCCTCCGCCTC------CT------CCTC---CTCCT------CCT----------------CCTGCTCCTCTATGTTCACGGCCT---CCCCACCATCTTCGTCCGTT---------------------------------------GGCTCCCCATCT------------CCTGG------CGCCCCAAAAACCAATCTCACGGCCAGCGGCAAACCAAAGGAGAAACGAAGGTGAGTCAC-A----CG-------AA----T-----------------------------C----------------------------------------------------------------------TGC--------------AA-TC-----------------------------------------------------CGGAAACCGCCGATA-------------TGC-AATCCCATCCTCT--------------TGTTGGATCT-G-CCTAGATCGC-----
droYak3 3R:26807892-26808131 + AGAAGCAGTCCCAATCGG------TGGCCA---CCAACTCCTCCTCCTC------CT------CCTC---ATCCT------CTT----------------------------CGTTCTCGGCCT---CCCCGCCATCTTCGGCCGTT---------------------------------------GGCTCCCCAGCT------------CCTGG------CGCCCAAAAATCCAATCTCACCGCCAGCGGCAAACCAAAGGAGAAACGAAGGTGAGTCAC-A----TG-------GA----C-----------------------------T-----A----------------------------------------------------------TGTA-C------------ATGGTAA-CC-----------------------------------------------------CGGATGCC-CTGATC-------------TAT-AATCCCATCCCCA--------------AATTCGATCT-G-CCTAGATCGCTTG-T
droEre2 scaffold_4820:2114817-2115052 - AGAAGCAGTCCCAATCG---------GCCA---CCAACTCCTCATCCGC------CT------CC---------T------CCT----------------------------CGTTCTCGGCCT---CCCCCACATCTTCGTCCGCT---------------------------------------GGCTCTCCATCT------------CCTGG------CGCCCCGAAATCCAATCTCACGGCCAGCGGCAAACCAAAGGAGAAACGAAGGTGAGTCAC-A----TG-------GA----T-----------------------------C----------------------------------------------------------------------TGCCTATACTACATGGTAA-TC-----------------------------------------------------CGGATGCC-CTCATC-------------TAT-AATCCCAGCCCTT--------------GATTGGATCT-G-CCTAGATCGC-GC-T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAAAGCAA------CGGAGCGCC------G---CTGCCGCTGCTG------------CA---GCGACG---------TTCGCGTCAAGCGCCAACGTCCCTT---------------------------------------------GTCAACGCTGGAGACAA------------------------GTCGCCGCCC------------GCTGC------TGCTGCAGGCGCTGCCTTGACAGCCAGCGGCAAGCCTAAGGAGAAACGAAGGTGAGTTAT-G----AT-CATCCTAA----T-----------------------------TTGAAAT---------------------CC--CCCACACCTT---------TTTCTGCCAGATAGACTA-A------------TAAG-AAATC-TAC---------GCTC---------------CTGCC----------------------------------------------------------------------------ATGTGATCTCT-GTTGGATGGGCTG-TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................GCCTAAGGAGAAACGAAG.....................................................................................................................................................................................................................................................................................................1812.002002000000000000000000000000000000000000000000000000000000000000
.AAAGCAA------CGGAGCGCC------G---CTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................GACAA------------------------GTCGCCGCCC------------GCTG...............................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGATCTCT-GTTGGATGGG.....2111.001000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................GC------TGCTGCAGGCGCTGCCT.......................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AAAAGCAA------CGGAGCGCC------G---CTGCCGCTGCTA------------CA---GCAACG---------TCG-------------------ACT---------------------------------------------GTCAGCGCTGGAGCCAAGTCACCGACCGCTGCTGCTGCTGGCGGTGT------TGTTGCTTCAGCAGC------AGCAGCAGGTATTGCCTTGACCGCAAGCGGCAAGCCTAAGGAGAAACGAAGGTGAGTTAT-G----GT-CACCCCAA----T---AG-----------------------T----TGGACTAATTTTGTCAACTCTCTTACCCCTCACT------AACA--------G--------CCAA-A------------TAAA-TAATC-TAA---------GCTC---------------CTGCC----------------------------------------------------------------------------ATGTGATCT-G-TCTGTCTGATGGG-CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................CGCTGGAGCCAAGTCACCGACCGCTGCC.................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
.....................................................................................................................................................................................................................................................AAGCGGCAAGCCTAAGGA..............................................................................................................................................................................................................................................................................................................1811.001100000
........................................TGCTA------------CA---GCAACG---------TCG-------------------ACT---------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
AAAAGCAA------CGGAGCGCC------G---CTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
............................................A------------CA---GCAACG---------TCG-------------------ACT---------------------------------------------GTCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.....................................CGCTGCTA------------CA---GCAACG---------TCG-------------------ACT---------------------------------------------GTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100
...................................GCCGCTGCTA------------CA---GCAACG---------TCG-------------------ACT---------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
.................................................................................................................................................................................................................................GCAGGTATTGCCTTGACCGCA...............................................................................................................................................................................................................................................................................................................................2111.001000010
droGri2
AAAAGCAA------CGGAGCGCC------G---CTGCCGCTGCAA------------CAGGAGCAACG---------TCGACGTCAAT-----------CT-----------CGTCC---------------------------------AAGGCTAGAACCAAGTCGACATCAGCTGCTGCTTCTGATTC------------------------------TGCTACAGGTGTGGGTTTGACTGCCAACGGCAAGCCTAAGGAGAAACGAAGGTGAGTTGATG----GT-CACCCTAA----T---CG------AT--------CTCAT-------------------------------GCTCCCCACTCCCTCCAACATTCCCCCTGCCGAATA-------GGT--------------AT-TC-AAAATTGACGACGCTC---------------CTGCC----------------------------------------------------------------------------ATGTGATCT-G--TCGGATGGGCTG-TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................TGCTGCTTCTGATTC------------------------------TGCT....................................................................................................................................................................................................................................................................................................................................................1930.33110
droWil2
AAAATCAG------CGCAATGGCGTGATCG---CTG------CTG------------------CATCTTCATCTCCATCGTCAT-------------------------------------------------------CAAGCT---------CT------------------------------GCCGCCAAGAAT------------TCAGGAGCATCCTCTGGAGGATCGGGACTAACTGCCAGCGGCAAGCCCAAGGAGAAACGCAGGTAAGTGTG-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCT---CTTAGCTGGATTT-TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..AATCAG------CGCAATGGCGTGATCG---CTG------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.......................................................................................................................................................................................................................AGCATCCTCTGGAGGATCGGGA........................................................................................................................................................................................................................................................................................................................................2211.00100100
................CAATGGCGTGATCG---CTG------CTG------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.....................................................................................................................................................................................................................................................CAGCGGCAAGCCCAAGGAG.............................................................................................................................................................................................................................................................................................................1911.00100100
.......................................................................................................................................................................................................................................TCGGGACTAACTGCCAGCGGC.........................................................................................................................................................................................................................................................................................................................2111.00100100
..........................................................................CCATCGTCAT-------------------------------------------------------CAAGCT---------CT------------------------------GCC........................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
..............................................................................CGTCAT-------------------------------------------------------CAAGCT---------CT------------------------------GCCGCCA....................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
......................................................................................................................................................................................................................GAGCATCCTCTGGAGGATCGGGACT......................................................................................................................................................................................................................................................................................................................................2511.00100100
....................................................................................................................................................................................................AT------------TCAGGAGCATCCTCTGG..................................................................................................................................................................................................................................................................................................................................................1911.00101000
...........................................................................CATCGTCAT-------------------------------------------------------CAAGCT---------CT------------------------------GC.........................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
............................................................................................................................................................................................................................................ACTAACTGCCAGCGGCAAGCC....................................................................................................................................................................................................................................................................................................................2111.00101000
..........................................CTG------------------CATCTTCATCTCCATCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
dp5
AAAAACAG------CGTAACGCC------G---CCGACCCCGCTG------------CT---GCTTCT---------------TCGAGCATCT-CTGCCACT---------------------------------------------GGCAGCGC------------------------------------GCT------AGCCAAGGCTTCTCC------AGGATCAGGATCGAACCTGACTGCCAGCGGCAAGCCCAAGGAGAAACGCAGGTGAGTCCC-C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCGTCCCGCC------------------------------C-------------AAT------CACCCACC--------------AATCGGATGT-C-TTTAAATCAGTTG-CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................TTCT---------------TCGAGCATCT-CTGCCACT---------------------------------------------GGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................................................................................................................................................CTGACTGCCAGCGGCAAGCCCAAGG...............................................................................................................................................................................................................................................................................................................2511.0010100000000
.......................................CCGCTG------------CT---GCTTCT---------------TCGAGCATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................................................................................CT-CTGCCACT---------------------------------------------GGCAGCGC------------------------------------GCT------A............................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
..........................................................T---GCTTCT---------------TCGAGCATCT-CTGCCACT---------------------------------------------GGG...............................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
.......................................................................................GCATCT-CTGCCACT---------------------------------------------GGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................ATCGAACCTGACTGCCAGCGG..........................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................TTCTCC------AGGATCAGGATCGA..........................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
AAAAACAG------CGTAACGCC------G---CCGACCCCGCTG------------CT---GCTTCT---------------TCGAGCATCT-CTGCCACT---------------------------------------------GGCAGCGC------------------------------------GCT------AGCCAAGGCTTCTCC------AGGATCAGGATCGAACCTGACTGCCAGCGGCAAGCCCAAGGAGAAACGCAGGTGAGTCCC-C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCGTCCCGCC------------------------------C-------------AAT------CACCCACC--------------AATCGGATGT-C-TTTAAATCAGTTG-CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................CTTCT---------------TCGAGCATCT-CTGCCACT---------------------------------------------GGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000
....................................................................................................................................................................................................................................................CCAGCGGCAAGCCCAAGGA..............................................................................................................................................................................................................................................................................................................1911.001001000
.............................................................................................................................................................................................................................AGGATCAGGATCGAACCTGACT..................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................................................CC------AGGATCAGGATCGAACCT......................................................................................................................................................................................................................................................................................................................................2011.001100000
................................................................................................................................................................................................................................ATCAGGATCGAACCTGACTGC................................................................................................................................................................................................................................................................................................................................2111.001001000
droAna3
AAAAACAAAAGCAGTCGG------CGATCG---CTCAATCCTCCT------------------------------------CTT----------------------------CGTCGACCACCCTTACTCCACCATCTT---CCTCT---------------------------------------GGATCCTCACC---------------CGT------CCTGGGAAAATCGAACCTCACGGCCAGCGGAAAACCCAAGGAGAAACGCAGGTGAGTCAT-A----GATC-----GGT------TAGGGTTAACTTTATATTCCTATAGG-C----------------------------------------------------------------------TGG--------------AG-TC--------------------------------CAC-------------------------------CC-------------CAT--ACCCGCCCCCC-----CGATATGCTCAATTGGATGT-T-TTTAGATCAGCGG-TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................AAACCCAAGGAGAAACGCAGTA...................................................................................................................................................................................................................................................................................................2211.001000010
.........................GATCG---CTCAATCCTCCT------------------------------------CTT----------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........................................................................................................................................................................................GATCCTCACC---------------CGT------CCTGGGAA................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................AGGAGAAACGCAGGTGAGTCAT-A----......................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................CATCTT---CCTCT---------------------------------------GGATCCTCACC---------------C................................................................................................................................................................................................................................................................................................................................................................2311.001001000
.....................................................................................................................................................................................................................................AATCGAACCTCACGGCCAGC............................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
AAAAGCAAAAGCAGTCGG------CAATAG---CTGCATCCACCT---C------CT------CGTC---CTCCT------CAT----------------------------CGTCGACCACCA---CCTCGCCATCTTCCT---CC---------------------------------------GGATCCGGATCA------------CCCGT------CCTGGTCAAATCGAACCTCACGGCCAGCGGCAAGCCCAAGGAGAAACGCAGGTGAGTCAT-A----GATCTA---GA----TGTTAG------AT--------CTATA---------------------------------------------------------------------G-ACCTGG--------------AG-TC-----------------------------------------------------CCTATACCCCCACCC-------------TAT-ACACCCTAC-----------CATGCTCTATTGGATCT-TTTTTAGATCAGAGG-TSizeHit CountTotal NormTotal
No Reads
droKik1
AGAAGCAA------CTGG------CGGCTG---CTGCATCCACCT------------CA---ACATCT----------------------------------------------TCCTCGGCCT---C---ATCATCGGCCTCTCCT---------------------------------------GTTTCCTCCGAT------------TCCTC------GGCCTCCAAATCCAATCTCACGGCCAGCGGAAAGCCAAAGGAGAAACGAAGGTGAGTGGA-A----TG-------CA----A-----------------------------C----------------------------------------------------------------------C---CAAATTACACTGT------------------------------------------------------------------GACCATA-------------TCC-ATTGCGATCC------------------CTCGAATAT-ATTTTAGATCAATTGCTSizeHit CountTotal NormTotal
No Reads
droFic1
AGAAGCAAACCGAGTCCG------TGGCTT---CTAACTCCTCC------------------------------T------CTT----------------------------CGATTTCCTCCT---CCCCACCGTCTTCGTCCTCT---------------------------------------GGCTCCCCATCT------------TCTGC------CGCCCCCAAATCCAATCTCACGGCCAGCGGAAAACCAAAGGAGAAGCGAAGGTGAGTCAC-A----CT-------AC----------------------------------C------------------------------------------------------------------------------------AATAA-TC-CGA---------TCCC---------------------------------------------TTAAACGATAACCTAATCCAATA-ATACCATC--------TGAAGCGCTCAAATGGATCC-A-AT----GGGCCTG-CSizeHit CountTotal NormTotal
No Reads
droEle1
AGAAGCAG---CAATCGG------TA---------------------------------------------TCCT------CAT----------------------------CGTATTCCTCCT---CCCCACCATCTTCGTCTTCTAGT------------------------------------GGTTCCCT------CTCACCACCCTCTGC------CGCCCCAAAATCCAATCTCACGGCCAGCGGTAAACCAAAGGAGAAACGAAGGTGAGTCAG-A----CA-CAAACAAA----T-----------------------------CCTACAT----------------------------------------------------------AGCT--TGC-----------AATAA-TT-CGA---------TCTC---------------------------------------------CTGACCAATACACCCATCCAACA-ATCCAATCCG---ATCCGTAGTACTCCATTGGATCT-G-CTTAGATCACTTG-TSizeHit CountTotal NormTotal
No Reads
droRho1
AGAAGCAA------TCGG------TGGCTGCCACCGACTCCTCCT------------------------------------CTT----------------------------CTTATTCCACCT---CTTCACCCTCTTCGTCTTCT---------------------------------------GGCTCTCT------TTCATCATCCCCTGC------CGCCCCAAAATCCAATCTCACGGCTAGCGGTAAACCAAAGGAGAAACGAAGGTGAGTCGG-A----CA-------GATAAAC----------------------------------AT----------------------------------------------------------GCCA-T------------CAAA-AAATC-AGA---------TCCC---------------------------------------------CTGACCAATACACCCATCCAATA-ATCCGATC--------CGTAGTGCTCCCTTGGATCT-G-CTCAGATCAC----TSizeHit CountTotal NormTotal
No Reads
droBia1
AGAAGCAG------TCGG------TGGCCA---CCAACTCCGCCTCCTC---CTCCG------CCTC---ATCCT------CCT----------------------------CGTACTCCTCCT---CCCCACCATCTTCGTCTGCG---------------------------------------GGATCCCCATCT------------TCGGC------GGCCCCAAAGTCCAATCTCACGGCCAGCGGCAAACCGAAGGAGAAACGAAGGTAAGTCAT-AGTGATC-------GATAG------------------------------A----TGA----------------------------------------------------------GCTA-T------------CTGATTA-TCCGCA---------TACCCTGACCCAGAGTATCT--------------------------------------------------------CGATCCCCCAT-----CCGAATCCATCGGATCT-G-CCTAGATCAG----TSizeHit CountTotal NormTotal
No Reads
droTak1
AGAAGCAA------TCGG------TGGCCA---CCAATTCCTCCTCCTC------CT------CC---------T------CCT----------------------------CGTTTTCTTCCT---CCCCACCATCTTCGTCTTCT---------------------------------------GGCTCCCCATCTTCTTCCTCATCTTCGGC------AGCCCCAAAATCCAATCTCACGGCCAGCGGCAAACCAAAGGAGAAACGAAGGTGAGTCAT-GTGGATC-------GAAAG------------------------------A----TAT----------------------------------------------------------AGTA-C------------TGGATAA-TCCTGA---------TACCCAGACCCACAGTATCCC-------------------------------------------ATTCAATT-ATGCGATCCCCCGAT-TGTA--ATTCCATCGGCTCT-G-CTTAAATCGC-----SizeHit CountTotal NormTotal
No Reads
droEug1
AAAACCAATCGCAGTCGG------TGGCCA---CGAGCTCCTCCACCTC------CT------CC---------C------CCT----------------------------CGTTTTCAACCT---CGCCATCATCTTCGTCTTCT---------------------------------------GGCTCTCCATCTACCTCCTCATCCTGCGC------GGCCCCAAAATCCAATCTCACGGCCAGCGGCAAACCGAAGGAGAAGCGAAGGTGAGTCAC-T----TG-------AA----C-----------------------------C------------------------------------------------------------------------------------------------------------------------------GCTGTACTGTCCACCAATCCGAATATC-TTGATC---------------G-AATTCC----------------------ATCCGATTT-G-CTTAGATCAGATG-TSizeHit CountTotal NormTotal
No Reads
dm3
AGAAGCAGTCCCAAGCGG------TGGTCA---CCAACACCTCCGCCTCCTCCTCCT------CCTG---TTCCT------CTT----------------------------CGTTCTCGTCCT---CCCCACCATCTTCGTCCGTT---------------------------------------GGCTCCCCATCT------------CCTGG------CGCCCCAAAAACCAATCTCACGGCCAGCGGCAAACCAAAGGAGAAAAGAAGGTGAGTCAC-A----CG-------AA----T-----------------------------C----------------------------------------------------------------------TGC--------------AA-TC-----------------------------------------------------CGGATACCGCCGATC-------------TAC-AATCCCATCCGTT--------------GGTTGGATCT-G-CCTAGATCGC-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................TCCGCCTCCTCCTCCT------CCTG---TTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................AATCTCACGGCCAGCGGCAAACC....................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................AAACCAAAGGAGAAAAGAAGGA...................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................AACCAAAGGAGAAAAGAAGG....................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GTCCGTT---------------------------------------GGCTCCCCATC................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CTCACGGCCAGCGGCAAACC....................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGAAGCAGTCCCAAGCGG------TGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................CCCCATCT------------CCTGG------CGCCCCA.................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CCT---CCCCACCATCTTCGTCCGTT---------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TCT------------CCTGG------CGCCCCAAAAACCA..........................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TCACGGCCAGCGGCAAACCAAAGGA..............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AACCAATCTCACGGCCAGCGGCAAACC....................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CAATCTCACGGCCAGCGGC.........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................AAACCAAAGGAGAAAAGAAGG....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAGCAGTCCCAAGCGG------TGGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................GGCAAACCAAAGGAGAAAAGG.......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CCAGCGGCAAACCAAAGG...............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................T---------------------------------------GGCTCCCCATCT------------CCTGG------CGC.....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ATCTTCGTCCGTT---------------------------------------GGCTCC.....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................CTCCCCATCT------------CCTGG------CGCCC...................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AAAGGAGAAAAGAAGGTGAGCA..............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................ACCATCTTCGTCCGTT---------------------------------------GGCTCC.....................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................CTG---TTCCT------CTT----------------------------CGTTCTCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.................................................................................................................................................................................................................................................CGGCCAGCGGCAAACCAAAGGA..............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CATCT------------CCTGG------CGCCCCAAAAACC...........................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GCAAACCAAAGGAGAAAAGAAGGTGAG................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................CAAACCAAAGGAGAAAAGAAGGA...................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................CCT---CCCCACCATCTTCGTCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
AGAAGCAGTCCCAAGCGG------TGGTCA---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................................................................................CCAATCTCACGGCCAGCGGC.........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................................................................................TTCGTCCGTT---------------------------------------GGCTCCCCATC................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CCAATCTCACGGCCAGCGG..........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CGTCCGTT---------------------------------------GGCTCCCCATCT------------C..................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AGCGGCAAACCAAAGGAGAAA..........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AAAAACCAATCTCACGGCCAGC............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................GCTCCCCATCT------------CCTGG------CGCC....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CCCCATCT------------CCTGG------CGCCCC..................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AAGGAGAAAAGAAGGTTT.................................................................................................................................................................................................................................................................................................18160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
droSim2
AGAAGCAGTCCCAAGCGG------TGGCCA---CCAACTCCTCCGCCTCCTCCTCCT------CCTG---CTCCT------CCT----------------------------CGTTCTCGGCCT---CCCCACCATCTTCGTCCGTT---------------------------------------GGCTCCCCATCT------------CCTGG------CGCCCCAAAAACCAATCTCACGGCCAGCGGCAAACCAAAGGAGAAACGAAGGTGAGTCCC-A----CG-------AG----T-----------------------------C----------------------------------------------------------------------CGC--------------AA-TC-----------------------------------------------------CGGATACCGCCGATC-------------TAC-AATCCCATCCCCT--------------GGTTGGATCT-G-CCTAGATCGC-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
AGAAGCAGTCCCAAGCGG------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
...........................CCA---CCAACTCCTCCGCCTCCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
..................................................................G---CTCCT------CCT----------------------------CGTTCTCGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
droSec2
AGAAGCAGTCCCAAGCGG------TGGCCA---CCAACTCCTCCGCCTC------CT------CCTC---CTCCT------CCT----------------CCTGCTCCTCTATGTTCACGGCCT---CCCCACCATCTTCGTCCGTT---------------------------------------GGCTCCCCATCT------------CCTGG------CGCCCCAAAAACCAATCTCACGGCCAGCGGCAAACCAAAGGAGAAACGAAGGTGAGTCAC-A----CG-------AA----T-----------------------------C----------------------------------------------------------------------TGC--------------AA-TC-----------------------------------------------------CGGAAACCGCCGATA-------------TGC-AATCCCATCCTCT--------------TGTTGGATCT-G-CCTAGATCGC-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.GAAGCAGTCCCAAGCGG------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
......................................................................................................................................................................................................................................................AGCGGCAAACCAAAGGAGAAACGAAG.....................................................................................................................................................................................................................................................................................................2611.0010010
......................................................................................................................................................................................................................................AACCAATCTCACGGCCAGCGGC.........................................................................................................................................................................................................................................................................................................................2211.0010100
..............................................................................................................................................................................................................................................................ACCAAAGGAGAAACGAAGGTGAG................................................................................................................................................................................................................................................................................................2311.0010010
droYak3
AGAAGCAGTCCCAATCGG------TGGCCA---CCAACTCCTCCTCCTC------CT------CCTC---ATCCT------CTT----------------------------CGTTCTCGGCCT---CCCCGCCATCTTCGGCCGTT---------------------------------------GGCTCCCCAGCT------------CCTGG------CGCCCAAAAATCCAATCTCACCGCCAGCGGCAAACCAAAGGAGAAACGAAGGTGAGTCAC-A----TG-------GA----C-----------------------------T-----A----------------------------------------------------------TGTA-C------------ATGGTAA-CC-----------------------------------------------------CGGATGCC-CTGATC-------------TAT-AATCCCATCCCCA--------------AATTCGATCT-G-CCTAGATCGCTTG-TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................ACCAAAGGAGAAACGAAGG....................................................................................................................................................................................................................................................................................................1911.00100000010000
..................................................................C---ATCCT------CTT----------------------------CGTTCTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...............................................................................................................................................................................................................................................CACCGCCAGCGGCAAACCAAAGGA..............................................................................................................................................................................................................................................................................................................2411.00101000000000
.....................................................................................................................................................................................................................................AATCCAATCTCACCGCCAGCGGCAAACC....................................................................................................................................................................................................................................................................................................................2811.00100100000000
....................................................................................................................................................................................................................................AAATCCAATCTCACCGCCAGCGGC.........................................................................................................................................................................................................................................................................................................................2411.00100000010000
...........................................................................................................................................................................................................................................................CAAACCAAAGGAGAAACGAAG.....................................................................................................................................................................................................................................................................................................2111.00101000000000
droEre2
AGAAGCAGTCCCAATCG---------GCCA---CCAACTCCTCATCCGC------CT------CC---------T------CCT----------------------------CGTTCTCGGCCT---CCCCCACATCTTCGTCCGCT---------------------------------------GGCTCTCCATCT------------CCTGG------CGCCCCGAAATCCAATCTCACGGCCAGCGGCAAACCAAAGGAGAAACGAAGGTGAGTCAC-A----TG-------GA----T-----------------------------C----------------------------------------------------------------------TGCCTATACTACATGGTAA-TC-----------------------------------------------------CGGATGCC-CTCATC-------------TAT-AATCCCAGCCCTT--------------GATTGGATCT-G-CCTAGATCGC-GC-TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................ATCTTCGTCCGCT---------------------------------------GGCTCTCC...................................................................................................................................................................................................................................................................................................................................................................................2120.5010000010

Generated: 05/16/2015 at 09:03 PM