dvi_3694

intron [Dvir\GJ10762-in]; exon [dvir_GLEANR_10665:4]; CDS [Dvir\GJ10762-cds]; intron [Dvir\GJ10762-in]; Antisense to intron [Dvir\GJ10404-in]

Name	Class	Family	Strand
(TA)n	Simple_repeat	Simple_repeat	+
Helitron-1_DVir	RC	Helitron	+

-----------------#################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTTTAACTATTCCAAAGTCCTCTGGTGCTACAGTTATTGGTGAGATGGGCGTAAGTATTTGCCTCGTTTTCAACTAAAACTATATTTTTATATCCTAAACCCATTAAATATGGATAAACTGGGTTTAATGATATATTCTTTATATATATATATATATATATATATTCTTGGTTAGAATTAATAGCCGAGTTGATCATGCCATGTTCGTCTGTTTGTCCGTTCGTCCGTCTGTTCACATATAGCTACCCAAA ************************************************..............(((..(((((..............((((((.((((((((................))))))))..))))))......((((((((((....))))))))))..(((((((.......))))))))))))..)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060679 140x9_testes_total	M047 female body	V116 male body	SRR060664 9_males_carcasses_total	SRR060667 160_females_carcasses_total
..............................CAGTTATTGGTGAGATGGGC.........................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0
..............................CAGTTATTGGTGAGATGG...........................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1
.....................CTGGTGCTACAGTTATTGGTGA................................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0
..............................CAGTTATTGGTGAGATGAGC.........................................................................................................................................................................................................	20	1	1	1.00	1	0	0	1	0	0
..........................GCTACAGTTATTGGTGAGATGGGC.........................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
................................GTTATTGGTGAGATGGGC.........................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
................................GTTATTGGTGAGATGGGCGGT......................................................................................................................................................................................................	21	2	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................TCTCCGTTCGTGGGTCTGTTC.................	21	3	5	0.20	1	0	1	0	0	0
..........................................................................................................AATATGGAGGAACTAGGTTT.............................................................................................................................	20	3	8	0.13	1	0	0	1	0	0

AAAATTGATAAGGTTTCAGGAGACCACGATGTCAATAACCACTCTACCCGCATTCATAAACGGAGCAAAAGTTGATTTTGATATAAAAATATAGGATTTGGGTAATTTATACCTATTTGACCCAAATTACTATATAAGAAATATATATATATATATATATATATAAGAACCAATCTTAATTATCGGCTCAACTAGTACGGTACAAGCAGACAAACAGGCAAGCAGGCAGACAAGTGTATATCGATGGGTTT ************************************************..............(((..(((((..............((((((.((((((((................))))))))..))))))......((((((((((....))))))))))..(((((((.......))))))))))))..)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060688 160_ovaries_total	SRR060687 9_0-2h_embryos_total	SRR060682 9x140_0-2h_embryos_total	SRR060666 160_males_carcasses_total	SRR060686 Argx9_0-2h_embryos_total
.....................................................................................................................................................................................................................ACAGGCAAGCAGGCAGACAA..................	20	0	3	0.33	1	1	0	0	0	0
......................................................................................................................................................................................................................................CAGGTGTGTATCGATGGG...	18	2	6	0.17	1	0	1	0	0	0
......................................................................................................................................................................................................................................CATATGTATTTCGATGGGTTT	21	3	8	0.13	1	0	1	0	0	0
.......................................................................................................................................................................................................................................AAGTATGTATCGATGGGT..	18	2	8	0.13	1	0	0	1	0	0
..AATCGATATGGCTTCAGG.......................................................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	1	0
...................................................................................................GGGTAATTTAGGCCTATTG.....................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12855:3177861-3178111 +	dvi_3694	TTT---TAA--CTATTCCAAAG----TCCT---------------C----------------------------------TGGTGC-TACA--GTTA------------------------TTGGTGAGAT----GG--GCGTAAGTAT--T--TGCCTCGTTTTCA------------------------------------------------------AC-----------------------------------TAAAACTAT--ATTTTTATATCCTAAACCC---------------------------ATTAAATATG---------GATAAACTGGGTTTAAT---------------------------------------------GATATA------TTCTTTATATATATA-------------------------------------TA-----TATA----TATATATATTCTTGGTTAGAATTAATAGCCGAGTTGATCATGCCATGTTCGTCTGTTTGTCCGTTCGTCCGTCTG----TTCACATAT-----AGCTA------CCCAAA
droMoj3	scaffold_32:1696-1959 -		AGC---T------ATTTCACAG----C-------------------------------------------------TGC-------TTGCAT--TTCTT----------------------GTG---TGAT----TT--G--TGTGTAATTA--TACCCTGTTTTTA------------------------------------------------------TT-----------------------------------TAT-TGTTG--ATTTTTATACCCTGAACCC---------------------------ATTGAAAATG---------GGAAATCAGGGTATAAT---------------------------------------------GGTTTT------T----TTTTTAAA-----GTATGTAACGGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTAG-TAC-CCAACATATTCTTGATCAGGGCGACGAGCTGAGTTGATTTGGCCCTGTCCGTCCGTCTGTCCGTCCGTCCGTCTG----TCCGTATGT---------------------A
droGri2	scaffold_15112:673603-673870 -		TAC---AGATATTATTATAATG----AGTA---------------C----------------------------------CTAT--ATGTAT--TTTTT----------------------TTGTT----------------------------------------------G--TTTTT--------------------------------------------------------------------------------TCTTTGT--ATTTTTATACCATGAACCT---------------------------ATTAAAACTG---------GGTAAAAAGGGTATAAT---------------------------------------------GATTTT-----------GTGCAAAT-----GTATGTAACAGGCAGCAGGAAGTATCTCCGACCCCTTAAAGTAT--------ATATATTCTTGATCAGGGTCAACAGTCGAGTCGATATAGCCATGTCCGTCTGTCCGTCCGTCCGTTTGTACGAACACGCAGATCTCAGAGAGCTAGAGACTTCAAAT
droWil2	scf2_1100000004510:1165400-1165640 -		TTGCTTTAA--ATCTTTTAAAG----TTTT---------------C----------------------------------TACATC-GACA--ATCA------------------------GAAATGAGCT----AA--G--CG----G--T--CACTATGTT----------GA--------------------------------------AAAATCTA-----------------------------------------TGTAC--GTTTTTATACCCTT-----GC-----------------------------------------------AAAAAGGGTATATT---------------------------------------------AATTTT-----------GGTCAGAA-----GTGTGCAACGCATAGAAGGAAGCATTTCCGACCATATAAAGTAT--------ATATATTCTTGATCAGCACGACAAGACGAGTTGAACTAGCCATGTCCGTCCGTCCGTCCGTCCGTCCGTCCG----T------------------------------
dp5	XL_group1e:822889-823078 -		TAC---GT-----ATTT------------------------------------------------------------------------------------------------------------------------------------------G---------ACTCGATG--ACCGT----------------------------------------------------------------------------------TCCCA--ATCCTTATACCCTATATGT---------------------------TCTAAAAAT----------AAGTATGGGGGTATATT---------------------------------------------AGATGT---------ATGGTGAAAA-----G------------------------------CCGCATAAAGTAAATACATACAAATATTCTTGATCAGCATCAATAGCTGAGTCGATTGAGCCATGTGTGT-AGTCCGTCCATCCGTCTGTCCG----TCCCTAT-----------------------A
droPer2	scaffold_5217:327-529 +		CAG-------------------------------------------------------------------------------------------TTT------------------------TTGGTGGGAT----TG--G--CG------------------------------------------------------------------------------------------------------------------------GGA--ATTTTTATACCC----------------------------------GATACTCAAAA-------TGAGTATTGGGGTATATT---------------------------------------------AGATTT---------GTGGTAAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTAT--------ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGTCCGTCTGTCCG----T------------------------------
droAna3	scaffold_13261:70064-70311 -		CTT---TA-CAGTATTGCTAAC----CCCT---------------C----------------------------------TAATC---GCACTCTTA------------------------TTAA-AAGAT----GG--TCGCAAGAAT--T--TGTT---------------GA--------------------------------------------------------------------ACCGCACA---TAACAAAAACTTT--ATATTTATACCATT-----GC-------------------------------------------------AGAGGGTATTAT---------------------------------------------AATTTT-----------GGTCAAAA-----GTGTGCAACGCAGTGAAGGAGACATCTCCGACCTTATAAAGTAT--------ATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTTTCTACG----C---------------------------AAA
droBip1	scf7180000396710:283349-283536 -		GTA---AA------------------------------------------------------------------------------------------------------------------------------------------TAT--T--TGCAGAATATTGT------------------------------------------------------GT-----------------------------------AACATTTTT--ATTTTTATACCCTT-----GA-------------------------------------------------AGAGTGTATAAA--GTATA-------------------------------------TATATAAGTAAGT-----AT-----------ATATGT----------AGTATAT-----ATATACTATATAGTAT--------ATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGACTGTCTGTCCGTCTGTCTGTTTC----TACG-----------------------C--A
droKik1	scf7180000302476:2766537-2766787 +		TGT---ACA--CTGTACGCAA---------------------------------------------------------------------A--GTTA------------------------TTGATATT----------------------------------------------ATTATTATTAAGTTAATCAAAATTCATACAAAATTCTTAATTTTAAGCTATAAATTCTAACAAGTTGAACCCTGAAGGGTT-ACAA---AAT--ATTTTTATACCCTT-----GC---------------------------------------------------AGGGTATTAT---------------------------------------------AATTTC-----------AGTC---------------------------------------ACCCTATAAAGTATA----CATATATATTCTTGATCAGCCTCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCTGTCTGTTTC----TAC-----------------------GCAAA
droFic1	scf7180000453928:119181-119294 -		ATG---TTA--ATTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTATATACA-------------------------------------TA-----CATA----TGTATATATCTTTGATCACCATCACTATCTAAGTCGATCTAGACACGACAGTTTATCTGCCTTTCTGTCTATGTG----TCTGTGTGT---------------------A
droEle1	scf7180000490402:23851-24076 -		CTT---CT-----ACTCCAAAG----ACTT---------------C----------------------------------TGGTAT-CATA--TTTC------------------------TTGAC----------------------------------------------G--ATTATTATTAGCTTAAC-----------------A-----------------------------------------------GAAAAAATTA--ATTTTTATACCCTT-----GC-------------------------------------------------AGAGGGTATTAT---------------------------------------------AATTTC-----------AGTCAGAA-----GTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTAT--------ATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCCG----T------------------------------
droRho1	scf7180000779056:24105-24319 -		TCT---AAT---CAGTCCAAAG----T-------------------------------------------------GTA-------ATGCAC--TTTTG----------------------TTGT-AAG---------------------------------------------------------------------------------------TTTTA-----------------------------------------CCTTC--ATTTTTATACCCTT-------------------------------------------------------------GTATTAT---------------------------------------------AATTTC-----------AGTCAAAA-----GTTTGCACCGCAGTGAAGGAGACATTTCCGACCCTATAAAGTAT--------ATATATTCTTGATCAGCATCACCAGGAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCCGTCCG----TCCGTTTCT---------A------CGCAAA
droBia1	scf7180000301390:33595-33823 -		CTT---TCA--ATATTTCAATA----TTTT---------------A----------------------------------TGGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAAAG--TAATTAGCAAGTGGAAGGGTGTATTATGGGAATTATTGCTAGCCTTGTTAATATTTTATTTGTAATTACTAAATTC-----------GTCGGAAA-----GTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCCATAAAGTAT--------ATATATTCTTGATCAGGATCACTAGCCGAGTCAATCTAGCAATGTCAGTCTGTCTGTCTGTCCGT------------------------------------------
droTak1	scf7180000415288:1519-1782 +		TTT---TGG--CCAAA---AAT----C-TGATCGGCTGGCCCAGT-GTGCACCGATCAAAG---------------------------------A-------TGTTTTT------------CTC--AAAAT------------------------------------------------------------------------------A-----------------------------------------------GTAAGTTTTT--ATATTTATACCC----------------------------------GTTACTCGTA---------GAGTAAAAGGGTATATT---------------------------------------------GTATTC-----------GTGCAAAA-----GTATGTAACAGCTAGAAGGAGGCGTTTCCGACCCCATTAAGTAT--------ATATATTCTTGATCTGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCTGTCCGTCTG----TCTGTCCGTC----TGTTA------CTCAGC
droEug1	scf7180000409779:257-500 -		TTT---TA-TAATGATCCATAGTTAAATTT---------------C----------------------------------TGGAACTCACA--CCTT------------------------TTGCT-----------------------TTATTAACAGAGT------------------------------------------------------TTTCAGC---------------------------------------TTCAT--CTATTTATACCC----------------------------------GTTACTCGTA---------GAGTAAAAGGGTATACT---------------------------------------------AGATTC-----------GTTGAAAA-----GTATGTAAAAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTAT--------ATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGTACG----TCC----------------------------
dm3	chrX:18312146-18312396 -		TTT---CA-CAA--T-TCACAA----A----------------------------TAAGAGATTCAGCTCATGAGAGGA-------TTGTAC--TATGCGTATGTTTTATTCATACTAATTTTGTTT----------------------------G---------ACTTGA-------------------------------------------------------------------------------A-------------GTG--ACTGTTATACCC----------------------------------GTTACTTGTG---------AAGCAAAAAT----CAT---------------------------------------------ATATATGTACAT-----ATATATAA-----TTATATAAATGATAA--GT----------------AATTTATAT--------ATAATTTCTCGATTAGTATCACTAGCCGAGTCAAACTACCCATGTCCGTTTGTCTGCCTGTCCGTCCGTTTG----TCCGTCT-----------------------A
droSim2	2r:21507433-21507726 -		TTT---TAA--CTATATTAAAT----TCAG---------------TTTAAAAT-----------------------AAT-------TAACAC--TTTTT----------------------GTG--GAAAT----AATAA--TGGGTATTTAATAGCCGAGT--CACTCCA---------------------------------------------TTTTAGC---------------------------------------TTTTTATCTTTGTATACCC----------------------------------GTTACTCGTA---------GAGTAAAAGGGTATACT---------------------------------------------AGATTC-----------GTTGAAAA-----ATGTGTAACAGGCAGAAGGATGCGTTTCCGACCATATAAAGTATG----TACATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCCGGATGTCCGTATGAACA----TCTCGATCTCA-AGAACTA------TAAAAG
droSec2	scaffold_85:32601-32818 -		ATT---TGA--CTGTTCT---------------------------A-----------T------------------GAAATGCATA-GACC--GGCA------------------------GTTGCAAGCTAATGGT--GTCTAAATAC--T--TATGCCCACTAGT------GT--------------------------------------AATACATT-----------------------------------------TATAG--ATCTTAATTCCC--------------------------------------------------------------------------------------------------------------------------------------------------TATGTAACAGGCTGAGGGAAGCGTTTCCTACTATATAAAGTAT--------ATATCATCTTGATCAGGATCAATAGCCAAGTCGATCTAGCCATGTCCGTCTGTCCGACTGTCCGTCTGTCCA----TAT----------------------------
droYak3	v2_chrUn_587:1321-1559 +		TTT---TA-TACTTTTTTAAAG----CACT---------------A----------------------------------AGGT----GC-------------GCTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGAC--TTTATTATTTCCTC-----GTATTGTATTTAAAACTATTTATACCCGTTACTCGTA---------GAGGAAAAGGGTATACT---------------------------------------------AGATTC-----------GTTGAAAA-----GTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTAT--------ATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCCGTCTGTCCGTTCGTCTGTCCG----T------------------------------
droEre2	scaffold_4770:803375-803614 +		TTT---AC-----ATTTAACGG----TTTT---------------C----------------------------------TGTTCT-CGCA--GCTT------------------------TTGTCTAGAT----GA--G--CT-------------------------------------------------------------------------------------------------------TGAATTGTC-GTAAATTTGT--TTTTTTATACCC----------------------------------GTTACTCGTA---------GAGTAAAAGGGTATACT---------------------------------------------ATATTC-----------GTTCAAAA-----GTATGTAACTGGCAGAAGGAAACGTTTCCGACCATATAAAGAATA----TACATATATTCTTGATCAGGATCAATAGCCCAGTCGATCTGGCCATGTTCGTCCGTCCGTCTGTCTGTCCGTATG-----------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TTT---TAA--CTATTCCAAAG----TCCT---------------C----------------------------------TGGTGC-TACA--GTTA------------------------TTGGTGAGAT----GG--GCGTAAGTAT--T--TGCCTCGTTTTCA------------------------------------------------------AC-----------------------------------TAAAACTAT--ATTTTTATATCCTAAACCC---------------------------ATTAAATATG---------GATAAACTGGGTTTAAT---------------------------------------------GATATA------TTCTTTATATATATA-------------------------------------TA-----TATA----TATATATATTCTTGGTTAGAATTAATAGCCGAGTTGATCATGCCATGTTCGTCTGTTTGTCCGTTCGTCCGTCTG----TTCACATAT-----AGCTA------CCCAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................CA--GTTA------------------------TTGGTGAGAT----GG--GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................CA--GTTA------------------------TTGGTGAGAT----GG--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................C----------------------------------TGGTGC-TACA--GTTA------------------------TTGGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................GC-TACA--GTTA------------------------TTGGTGAGAT----GG--GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GTTA------------------------TTGGTGAGAT----GG--GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GTTA------------------------TTGGTGAGAT----GG--GCGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGC---T------ATTTCACAG----C-------------------------------------------------TGC-------TTGCAT--TTCTT----------------------GTG---TGAT----TT--G--TGTGTAATTA--TACCCTGTTTTTA------------------------------------------------------TT-----------------------------------TAT-TGTTG--ATTTTTATACCCTGAACCC---------------------------ATTGAAAATG---------GGAAATCAGGGTATAAT---------------------------------------------GGTTTT------T----TTTTTAAA-----GTATGTAACGGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTAG-TAC-CCAACATATTCTTGATCAGGGCGACGAGCTGAGTTGATTTGGCCCTGTCCGTCCGTCTGTCCGTCCGTCCGTCTG----TCCGTATGT---------------------A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGCGTGGCAGACCC.............................................................................................................................	20	20	0.40	8	8	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCGACGAGCTGAGTTGA.........................................................................	21	20	0.35	7	7	0	0	0	0	0
..C---T------ATTTCACAG----C-------------------------------------------------TGC-------TTGCAT--TTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.25	5	5	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGTCCGTCCGTCTGTCCG...............................................	21	20	0.25	5	5	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCCTGTCCGTCCGTCTG...................................................	22	20	0.10	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCCTGTCCGTCCGTC.....................................................	19	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTCTTGATCAGGGCGACG....................................................................................	22	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACGGGCAGAAGGAGG.........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCCTGTCCGTCCGTCTGT..................................................	21	20	0.05	1	1	0	0	0	0	0

droGri2

TAC---AGATATTATTATAATG----AGTA---------------C----------------------------------CTAT--ATGTAT--TTTTT----------------------TTGTT----------------------------------------------G--TTTTT--------------------------------------------------------------------------------TCTTTGT--ATTTTTATACCATGAACCT---------------------------ATTAAAACTG---------GGTAAAAAGGGTATAAT---------------------------------------------GATTTT-----------GTGCAAAT-----GTATGTAACAGGCAGCAGGAAGTATCTCCGACCCCTTAAAGTAT--------ATATATTCTTGATCAGGGTCAACAGTCGAGTCGATATAGCCATGTCCGTCTGTCCGTCCGTCCGTTTGTACGAACACGCAGATCTCAGAGAGCTAGAGACTTCAAAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TTGCTTTAA--ATCTTTTAAAG----TTTT---------------C----------------------------------TACATC-GACA--ATCA------------------------GAAATGAGCT----AA--G--CG----G--T--CACTATGTT----------GA--------------------------------------AAAATCTA-----------------------------------------TGTAC--GTTTTTATACCCTT-----GC-----------------------------------------------AAAAAGGGTATATT---------------------------------------------AATTTT-----------GGTCAGAA-----GTGTGCAACGCATAGAAGGAAGCATTTCCGACCATATAAAGTAT--------ATATATTCTTGATCAGCACGACAAGACGAGTTGAACTAGCCATGTCCGTCCGTCCGTCCGTCCGTCCGTCCG----T------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................................................................................................................................................................AGGGTATATT---------------------------------------------AATTTT-----------GGTCAGAA-----G..............................................................................................................................................................	25	20	0.05	1	0	1	0	0	0

dp5

TAC---GT-----ATTT------------------------------------------------------------------------------------------------------------------------------------------G---------ACTCGATG--ACCGT----------------------------------------------------------------------------------TCCCA--ATCCTTATACCCTATATGT---------------------------TCTAAAAAT----------AAGTATGGGGGTATATT---------------------------------------------AGATGT---------ATGGTGAAAA-----G------------------------------CCGCATAAAGTAAATACATACAAATATTCTTGATCAGCATCAATAGCTGAGTCGATTGAGCCATGTGTGT-AGTCCGTCCATCCGTCTGTCCG----TCCCTAT-----------------------A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGC.................................................................................	24	20	2.60	52	0	52	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACAAATATTCTTGATCAGCAT........................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCTGAGTC...........................................................................	24	12	0.17	2	0	1	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCTGAGTCGA.........................................................................	26	12	0.17	2	0	1	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCTGAGTCG..........................................................................	25	12	0.17	2	0	1	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCTGAG.............................................................................	24	13	0.15	2	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCTGAGT............................................................................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCTGAGTCGATTGAGC...................................................................	21	13	0.08	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATAGCTGAGTCGATT.......................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCT................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCT................................................................................	23	15	0.07	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCTGAGTCGATTG......................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCT................................................................................	20	17	0.06	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAG-------------------------------------------------------------------------------------------TTT------------------------TTGGTGGGAT----TG--G--CG------------------------------------------------------------------------------------------------------------------------GGA--ATTTTTATACCC----------------------------------GATACTCAAAA-------TGAGTATTGGGGTATATT---------------------------------------------AGATTT---------GTGGTAAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTAT--------ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGTCCGTCTGTCCG----T------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAG.............................................................................	22	20	3.65	73	0	73	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATAAAG......................................................................................................................	27	20	0.45	9	0	9	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTCTG...............................................	20	20	0.25	5	0	5	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCTGTCTGTCCG...................................................	25	20	0.20	4	0	4	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TT---------GTGGTAAAAATGGATGTGTGT.........................................................................................................................................................	23	16	0.06	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAAAAATGGATGTGTG..........................................................................................................................................................	20	18	0.06	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................TCAAAA-------TGAGTATTGGGGTA..............................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
..G-------------------------------------------------------------------------------------------TTT------------------------TTGGTGGGAT----TG--G--CG------------------------------------------------------------------------------------------------------------------------GG...............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCCGAGTCGATTG......................................................................	21	20	0.05	1	0	0	0	1	0	0

droAna3

CTT---TA-CAGTATTGCTAAC----CCCT---------------C----------------------------------TAATC---GCACTCTTA------------------------TTAA-AAGAT----GG--TCGCAAGAAT--T--TGTT---------------GA--------------------------------------------------------------------ACCGCACA---TAACAAAAACTTT--ATATTTATACCATT-----GC-------------------------------------------------AGAGGGTATTAT---------------------------------------------AATTTT-----------GGTCAAAA-----GTGTGCAACGCAGTGAAGGAGACATCTCCGACCTTATAAAGTAT--------ATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTTTCTACG----C---------------------------AAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCATGTCCGTCTGTCCG...................................................	22	20	0.70	14	14	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAAGGAG..........................................................................................................................................	19	20	0.20	4	0	0	0	0	0	4
..............................................................................................................................................................................................................................................................................................................................................................................................................TTTT-----------GGTCAAAA-----GTGTGCAACGCA...................................................................................................................................................	24	20	0.15	3	0	0	3	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTCCGTCTGTCTGT..........................................	20	20	0.15	3	3	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCTGTTTCT......................................	19	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCTGAGTCGATATGA....................................................................	20	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCTGTTTCTACG----...............................	21	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................T-----GC-------------------------------------------------AGAGGGTATTAT---------------------------------------------AATTTT-----------GGTCA.......................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGTGAAGGAGACATCTCCGACCT.............................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCCGTCTGTCTGTTTC.......................................	25	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGTCTGTCTG...........................................	23	20	0.05	1	1	0	0	0	0	0

droBip1

GTA---AA------------------------------------------------------------------------------------------------------------------------------------------TAT--T--TGCAGAATATTGT------------------------------------------------------GT-----------------------------------AACATTTTT--ATTTTTATACCCTT-----GA-------------------------------------------------AGAGTGTATAAA--GTATA-------------------------------------TATATAAGTAAGT-----AT-----------ATATGT----------AGTATAT-----ATATACTATATAGTAT--------ATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGACTGTCTGTCCGTCTGTCTGTTTC----TACG-----------------------C--A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGT---ACA--CTGTACGCAA---------------------------------------------------------------------A--GTTA------------------------TTGATATT----------------------------------------------ATTATTATTAAGTTAATCAAAATTCATACAAAATTCTTAATTTTAAGCTATAAATTCTAACAAGTTGAACCCTGAAGGGTT-ACAA---AAT--ATTTTTATACCCTT-----GC---------------------------------------------------AGGGTATTAT---------------------------------------------AATTTC-----------AGTC---------------------------------------ACCCTATAAAGTATA----CATATATATTCTTGATCAGCCTCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCTGTCTGTTTC----TAC-----------------------GCAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATG---TTA--ATTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTATATACA-------------------------------------TA-----CATA----TGTATATATCTTTGATCACCATCACTATCTAAGTCGATCTAGACACGACAGTTTATCTGCCTTTCTGTCTATGTG----TCTGTGTGT---------------------A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTT---CT-----ACTCCAAAG----ACTT---------------C----------------------------------TGGTAT-CATA--TTTC------------------------TTGAC----------------------------------------------G--ATTATTATTAGCTTAAC-----------------A-----------------------------------------------GAAAAAATTA--ATTTTTATACCCTT-----GC-------------------------------------------------AGAGGGTATTAT---------------------------------------------AATTTC-----------AGTCAGAA-----GTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTAT--------ATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCCG----T------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCT---AAT---CAGTCCAAAG----T-------------------------------------------------GTA-------ATGCAC--TTTTG----------------------TTGT-AAG---------------------------------------------------------------------------------------TTTTA-----------------------------------------CCTTC--ATTTTTATACCCTT-------------------------------------------------------------GTATTAT---------------------------------------------AATTTC-----------AGTCAAAA-----GTTTGCACCGCAGTGAAGGAGACATTTCCGACCCTATAAAGTAT--------ATATATTCTTGATCAGCATCACCAGGAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCCGTCCG----TCCGTTTCT---------A------CGCAAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTT---TCA--ATATTTCAATA----TTTT---------------A----------------------------------TGGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAAAG--TAATTAGCAAGTGGAAGGGTGTATTATGGGAATTATTGCTAGCCTTGTTAATATTTTATTTGTAATTACTAAATTC-----------GTCGGAAA-----GTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCCATAAAGTAT--------ATATATTCTTGATCAGGATCACTAGCCGAGTCAATCTAGCAATGTCAGTCTGTCTGTCTGTCCGT------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTT---TGG--CCAAA---AAT----C-TGATCGGCTGGCCCAGT-GTGCACCGATCAAAG---------------------------------A-------TGTTTTT------------CTC--AAAAT------------------------------------------------------------------------------A-----------------------------------------------GTAAGTTTTT--ATATTTATACCC----------------------------------GTTACTCGTA---------GAGTAAAAGGGTATATT---------------------------------------------GTATTC-----------GTGCAAAA-----GTATGTAACAGCTAGAAGGAGGCGTTTCCGACCCCATTAAGTAT--------ATATATTCTTGATCTGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCTGTCCGTCTG----TCTGTCCGTC----TGTTA------CTCAGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTT---TA-TAATGATCCATAGTTAAATTT---------------C----------------------------------TGGAACTCACA--CCTT------------------------TTGCT-----------------------TTATTAACAGAGT------------------------------------------------------TTTCAGC---------------------------------------TTCAT--CTATTTATACCC----------------------------------GTTACTCGTA---------GAGTAAAAGGGTATACT---------------------------------------------AGATTC-----------GTTGAAAA-----GTATGTAAAAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTAT--------ATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGTACG----TCC----------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTT---CA-CAA--T-TCACAA----A----------------------------TAAGAGATTCAGCTCATGAGAGGA-------TTGTAC--TATGCGTATGTTTTATTCATACTAATTTTGTTT----------------------------G---------ACTTGA-------------------------------------------------------------------------------A-------------GTG--ACTGTTATACCC----------------------------------GTTACTTGTG---------AAGCAAAAAT----CAT---------------------------------------------ATATATGTACAT-----ATATATAA-----TTATATAAATGATAA--GT----------------AATTTATAT--------ATAATTTCTCGATTAGTATCACTAGCCGAGTCAAACTACCCATGTCCGTTTGTCTGCCTGTCCGTCCGTTTG----TCCGTCT-----------------------A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTATCACTAGCCGAGTC...........................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TGA-------------------------------------------------------------------------------A-------------GTG--ACTGTTATACCC----------------------------------G.............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTTGTCTGCCTGTCCGTC.........................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTTGTCTGCCTGTCC............................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTT---TAA--CTATATTAAAT----TCAG---------------TTTAAAAT-----------------------AAT-------TAACAC--TTTTT----------------------GTG--GAAAT----AATAA--TGGGTATTTAATAGCCGAGT--CACTCCA---------------------------------------------TTTTAGC---------------------------------------TTTTTATCTTTGTATACCC----------------------------------GTTACTCGTA---------GAGTAAAAGGGTATACT---------------------------------------------AGATTC-----------GTTGAAAA-----ATGTGTAACAGGCAGAAGGATGCGTTTCCGACCATATAAAGTATG----TACATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCCGGATGTCCGTATGAACA----TCTCGATCTCA-AGAACTA------TAAAAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................TACTCGTA---------GAGTAAAAGGGTA..............................................................................................................................................................................................................................................	21	20	7.35	147	0	0	0	0	147	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACT---------------------------------------------AGATTC-----------GTTGAAA.....................................................................................................................................................................	27	20	3.70	74	0	0	0	0	0	0	74	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATC.......................................................................	24	20	2.20	44	0	0	0	0	0	0	0	0	0	0	44	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TA---------GAGTAAAAGGGTATACT---------------------------------------------AGATTC-----------GT..........................................................................................................................................................................	27	20	1.45	29	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAACAGGCAGAAGGATGCGT......................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGTCT........................................................	25	20	0.75	15	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGC.................................................................................	20	20	0.55	11	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGTC...........................................................................	26	20	0.50	10	0	1	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................AGTAAAAGGGTATACT---------------------------------------------AGATTC-----------GTTGAA......................................................................................................................................................................	28	20	0.45	9	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGATGCGT......................................................................................................................................	20	5	0.40	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GGGTATACT---------------------------------------------AGATTC-----------GTTGAAAA-----A..............................................................................................................................................................	24	5	0.40	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TA---------GAGTAAAAGGGTA..............................................................................................................................................................................................................................................	15	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGATC.......................................................................	28	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTATGAACA----T..............................	16	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATAGCC................................................................................	25	20	0.30	6	0	0	0	1	0	0	0	0	1	0	4	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ATACT---------------------------------------------AGATTC-----------GTTGAAAA-----A..............................................................................................................................................................	20	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATCTGGC...................................................................	28	20	0.25	5	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGCCATGTCCGTC.........................................................	26	20	0.20	4	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGATGCGTT.....................................................................................................................................	17	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACT---------------------------------------------AGATTC-----------GTTGAAA.....................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGATGCGT......................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGATGCGTT.....................................................................................................................................	16	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGATGCG.......................................................................................................................................	16	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTGTATACCC----------------------------------GTTACTCGTA---------GAGTA......................................................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGATG.........................................................................................................................................	18	6	0.17	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGATG.........................................................................................................................................	15	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTGGCCATGTC.............................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGTCTG.......................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCC..................................................................	15	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGATGCGT......................................................................................................................................	15	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TACT---------------------------------------------AGATTC-----------GTTGAAAA-----A..............................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTATACT---------------------------------------------AGATTC-----------GTTGAAAA-----A..............................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGATGCGTTTCCGAC...............................................................................................................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGAT........................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATC.......................................................................	23	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GTATACCC----------------------------------GTTACTCGTA---------GAG........................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TACTCGTA---------GAGTAAAAGGGTATACT---------------------------------------------AGA..........................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAA.....................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTC.............................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGCCATGTC.............................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGTC.........................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGAT........................................................................	23	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCAATAGCCGA..............................................................................	26	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATATTCTTGATCAGGATCAAT....................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGTATACCC----------------------------------GTTACT........................................................................................................................................................................................................................................................................	15	18	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGATCAATAGCCGAGTCGAT........................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTGGCCATGTCCGT..........................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTGGCCATGTCCGT..........................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTGGC...................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGGCCATGTCCGTC.........................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTGGCCATGTCCGTCTG.......................................................	30	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTGGCCATGTCCGT..........................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTC.....................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCGTA---------GAGTAAAAGGGTATACT---------------------------------------------A............................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGATCTGG....................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATC.......................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTG.....................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGGCCATGTC.............................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGTCTGT......................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTGGCCAT................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGTCGAT........................................................................	29	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTG.....................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GTAAAAGGGTATACT---------------------------------------------AGATTC-----------GTTGAA......................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTGG....................................................................	16	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTGGCCATGTCCGTC.........................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGG....................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCGAGTCGA.........................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTGGCCATGTCC............................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

ATT---TGA--CTGTTCT---------------------------A-----------T------------------GAAATGCATA-GACC--GGCA------------------------GTTGCAAGCTAATGGT--GTCTAAATAC--T--TATGCCCACTAGT------GT--------------------------------------AATACATT-----------------------------------------TATAG--ATCTTAATTCCC--------------------------------------------------------------------------------------------------------------------------------------------------TATGTAACAGGCTGAGGGAAGCGTTTCCTACTATATAAAGTAT--------ATATCATCTTGATCAGGATCAATAGCCAAGTCGATCTAGCCATGTCCGTCTGTCCGACTGTCCGTCTGTCCA----TAT----------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCAAGTCGATCTAGCCATGTC.............................................................	25	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAGTCGATCTAGCCATGTCCGTC.........................................................	28	1	1.00	1	1	0	0	0
............................................................................GAAATGCATA-GACC--GGCA------------------------GTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAT--------ATATCATCTTGATCAGGATCAA.....................................................................................	26	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAT--------ATATCATCTTGATCAGGA.........................................................................................	22	1	1.00	1	0	0	1	0

droYak3

TTT---TA-TACTTTTTTAAAG----CACT---------------A----------------------------------AGGT----GC-------------GCTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGAC--TTTATTATTTCCTC-----GTATTGTATTTAAAACTATTTATACCCGTTACTCGTA---------GAGGAAAAGGGTATACT---------------------------------------------AGATTC-----------GTTGAAAA-----GTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTAT--------ATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCCGTCTGTCCGTTCGTCTGTCCG----T------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................TCGTA---------GAGGAAAAGGGTATACT---------------------------------------------AGATT........................................................................................................................................................................................	27	9	1.56	14	0	14	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCGTT.....................................................................................................................................	26	20	1.20	24	0	0	0	0	0	0	0	0	0	0	24
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGA..............................................................................	24	20	1.15	23	0	23	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCGTA---------GAGGAAAAGGGTATACT---------------------------------------------AGA..........................................................................................................................................................................................	25	10	1.00	10	0	10	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCGTA---------GAGGAAAAGGGTATACT---------------------------------------------AGAT.........................................................................................................................................................................................	26	10	0.90	9	0	9	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCG..........................................................................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	8
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGT............................................................................	23	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCGTTTCCGAC...............................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	3	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCGTA---------GAGGAAAAGGGTATACT---------------------------------------------AGATTC-----------............................................................................................................................................................................	28	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATCAATAGCC................................................................................	23	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCGTA---------GAGGAAAAGGGTATACT---------------------------------------------AG...........................................................................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGA..............................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTCCGACCATATAAAGTAT--------ATA........................................................................................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----GTATGTAACAGGCAGAAGG............................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GGAAAAGGGTATACT---------------------------------------------AGATTC-----------GTTGA.......................................................................................................................................................................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCGTA---------GAGGAAAAGGGTATACT---------------------------------------------AGT..........................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAATAGC.................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTTTCCGACC..............................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCGTTTCC..................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGGCCATGTC.............................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTCCGACCATATAAAGTAT--------ATATA......................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTGG....................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGGGTATACT---------------------------------------------AGATTC-----------GTTGAA......................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGTCC........................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

TTT---AC-----ATTTAACGG----TTTT---------------C----------------------------------TGTTCT-CGCA--GCTT------------------------TTGTCTAGAT----GA--G--CT-------------------------------------------------------------------------------------------------------TGAATTGTC-GTAAATTTGT--TTTTTTATACCC----------------------------------GTTACTCGTA---------GAGTAAAAGGGTATACT---------------------------------------------ATATTC-----------GTTCAAAA-----GTATGTAACTGGCAGAAGGAAACGTTTCCGACCATATAAAGAATA----TACATATATTCTTGATCAGGATCAATAGCCCAGTCGATCTGGCCATGTTCGTCCGTCCGTCTGTCTGTCCGTATG-----------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACTGGCAGAAGGA...........................................................................................................................................	18	5	0.20	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCC...............................................................................	19	12	0.08	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTTCCGACCATATAAAG......................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................TACTCGTA---------GAGTAAAAGGGT...............................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0

dvi_3694

scaffold_12855:3177911-3178061 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads