ID:

dvi_3667

 Coordinate:

scaffold_12855:3020272-3020422 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ10417-cds]; exon [dvir_GLEANR_10344:3]; intron [Dvir\GJ10417-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTATATGGTGCCTACAGAAGCAGCTATACGGATGCGGAGGGCAATAAGAGGTGAGTTTATTGAGGCGTTTAGTTCATAAGTTAGATAAAAAAAAAACCCACTACGCGCTTAAAATCATAACTAAACTACGTTGAGTAAAAGCTCGTGAGCGTATTTACTCCTCTGACTGGTTAGTGCTTAATGAACTGGTGCGTGTTCAATAAGCCGGTCTCAGCTACGCTGAGCAAAGCTTTCGGGAGAGCTTGCACGCG
**************************************************((.........((.((((.((((((((........................((.(((((..............(((((.((((((((((.(((....)))...)))))))....))))))))))))).))))))))))..)))).))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M061
embryo
 SRR060679
140x9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 M027
male body		 SRR060676
9xArg_ovaries_total
 M047
female body
 SRR060672
9x160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060678
9x140_testes_total
.....TGGTGCGTAAAGAAGCAGCTAG................................................................................................................................................................................................................................ 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GAAGCAGCTATACGGATGCGGAGG................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................CAGCTATACGGATGCGGAGGGC................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GGATGCGGAGGGCAATAAGA.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................CGTAAGTTAGATAAAGAAAAA............................................................................................................................................................ 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................GCAGCTATACGGATGCGGAG.................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................ATCTATACGGATGCGGAGGG.................................................................................................................................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................AAGATGTCAGTTTATTGAGGC......................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................CTATACGGGTGCGGAGGGCAATA............................................................................................................................................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TGGTGCGTAAAGAAGCAGCTA................................................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GCTATACGGATGCGGAGGG.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGTAAGTTAGATAAAAAAAAA............................................................................................................................................................ 21 2 4 0.75 3 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0
...................................................................................................................................................AGCGTATTTTCTCCTCGGACC................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................AAAAAGCCGGTCTCAGTT................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................TGTAAGTTAGATAAAAAAAA............................................................................................................................................................. 20 2 16 0.25 4 0 0 0 1 0 0 0 0 0 0 1 0 0 1 1 0 0
....ACGGTACCTACAGAAGAAGC................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................TATAAGTTAGCTAAAAAAAAA............................................................................................................................................................ 21 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ATAAGCCGGATTCAGATACG................................ 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGTTCACAAGTTAGAAAAAAAAAAA............................................................................................................................................................ 25 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................CATAAAACCCACGACGCGC............................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TATAAGTTAGAGAAAAAAAA............................................................................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................TATTTTCTCCTCTGAC.................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GATATACCACGGATGTCTTCGTCGATATGCCTACGCCTCCCGTTATTCTCCACTCAAATAACTCCGCAAATCAAGTATTCAATCTATTTTTTTTTTGGGTGATGCGCGAATTTTAGTATTGATTTGATGCAACTCATTTTCGAGCACTCGCATAAATGAGGAGACTGACCAATCACGAATTACTTGACCACGCACAAGTTATTCGGCCAGAGTCGATGCGACTCGTTTCGAAAGCCCTCTCGAACGTGCGC
**************************************************((.........((.((((.((((((((........................((.(((((..............(((((.((((((((((.(((....)))...)))))))....))))))))))))).))))))))))..)))).))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 M047
female body
 V047
embryo
......................................................................................................GGTGCGAATTTTAGTAGTGA................................................................................................................................. 20 3 5 0.20 1 1 0 0
............ATGTCTACCTCGATCTGCC............................................................................................................................................................................................................................ 19 3 18 0.06 1 0 0 1
........................................................................................................................................................TAAATGCGGAGAGTGACTA................................................................................ 19 3 20 0.05 1 1 0 0
.............................................................................................................................................................................................................................CTCGTTTCGAAAGCGCTCT........... 19 1 20 0.05 1 0 1 0
.............................................................................................................................................................................................................................CTCGTTTCGAAAGCGCTCTC.......... 20 1 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:3020222-3020472 - dvi_3667 CTATATGGTGCCTACAGAAGCAGCTATACGGATGCGGAGGGCAATAAGAGGTGAGTTTATT-GAGG--------------------------CGT-TT-----AGTTCATAAGTTAGATAAAAAAAAAACCCACTACGCGCTTAAA------------ATCATAACTAAA----CTACGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------------------GTAAAAGCTCGTGAGCGTATTTACTCCTCTGACTGGTTAGTGCTTAATGAACT---------GG--------------------TGCGT--GTTCAATAAGCCGGTCTCAGCTACGCTGA---GCAA-AGCTT--------TCGGG----AGAGCTT------G-CACG---CG
droMoj3 scaffold_6540:10171998-10172379 + CTTATTGGCTCCTATAGAAGCAGCTATGTGGATGAAGAAGGCAACGAGAGGTGAGTTTAATTCGTA------------------------GGCATT----AAAAAC----------AGTGAG----------------TAC--AG-CTTATGAAAGACATCAAAACTGAACGTGCTGCATTGAGTAAAAGCTCTGCGTTCCCATTTTATCGAAAACTAAACCTAAATTGA-ACTTTATATGAGTCGAAGATCGTGAGCACAATT-GCAGCTCTATACGCT-CAAGTGCTAAAGCCAATAAGAGACAGAGCGCGTGA---------------------------------------------------------------------------------GCATGGTGC--------------------CAT-------CTCTATATGCC-AAATG--------------------------------------------------------------------------------------------------------------------CTCAATGAAGTGTCAGTGTGGTGGTGGTAAGCTG------AGCGCGACTGTTCAATAAGCCGGTCTCAGCT--GTTGC---GCGA-AGCTT--------TCGGG----AGAGCTT------G-CACG---CA
droGri2 scaffold_14906:5718175-5718450 - CTTAATGGCGCCTATCGAAGCAGTTACACCGGTGCCGATGGCAAGCAGAGGTGAGTGTATTTA-TG--------------------------CATT----TCATAT----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGTCCCCC-TAATGCATTTGTGATGGAGTTGGTGCACTAAGATTAGTGAAAAGCTTATACTCAATGCTCATTGATCATAGTATTTTGAGTCAAAGCTTTTAAGTGAATACGCATTT--------------CTCACTGAATG---------CG------------------AGCGGGCCAGCACGCCATGCCGGTCTCAGCT--GTTGA---CAGAAGCTTT--------CCGTATTAAAAAGCTT------G-ATCG---CA
droWil2 scf2_1100000004943:6214034-6214195 + CTGACGGGAGCATATTTGACTGAATATACCACAGCTGATGGCGATAAACAGTAAGTAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATATTAT---CA-------------------------------------------ATGAATACCCC-TAATGCATGCCAT-TGGAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCCGGTCTCAGCT--GTTAGTGAATGA-AAGCT--------CAAGT----AAAGCTTAGGCTGCTGCTG---TA
dp5 2:9972943-9972998 - CTGACGGGCAGCTACAGAAGCAGCTACACAGATGCCGCGGGCAATGAAAAGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_0:10510131-10510323 + CTGACGGGCAGCTACAGAAGCAGCTACACAGATGCCGCGGGCAATGAAAAGTGAGTACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAGTTAA--------------------GTATTGAATACCGAATACCCC-AAATGCATGCGCT-TGGAGTTGGTG-------------------------------------------------------------------------------------------------------------------------------TTGATTCTCAGCT-----TGCTTCAAAGCCGGTCTCAGCT--GTTCAG--GCGA-GCTTCCACGAACGCAAAA----AAAGCTC------T-CCCT---CG
droAna3 scaffold_13340:1685458-1685743 + CTGACGGGAAGCTACATTAGCAGCTATGCCGGCGGCGATGGCATTTCAAAGTAAGTCGATTTTATGTCAAACTTTTTTGTGGGGTTCCTATGCAC-----AAAAAC----------TATG------------------CAC--AAATT----TATGACACAACAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACCATTGT---CAAATTATGAGCAAACATTCTTTTTAGATTTATTTCTT-------GAGAATATCCCTCAATGCCCGGCTT-GAGAGCT------------------------------------------------------------------------------------------------------ATTCGAAC---------------------TTTATTTT------TATTTTTTCAGAAGCCGGTCTCAGCT--GTTGA---GCGA-GCTTTT-------CCAGC--AAAAAGCTA------C-GCGA---TC
droBip1 scf7180000396712:2644329-2644389 - CTGACGGGCAGCTACCTTAGCAGCTATACCGGCAGCGAAGGAATTGTAAAGTAAGTATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302392:706067-706122 - CTCACTGGAAGCTATATCAGCAACTACACGGATGCCAGCGGAAATGTCAAGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453800:1602433-1602540 + CTGTCGGGCAGCTACATTAGCAACTACACCAATGCCCAAGGGGTTGCAAGGTAAGTTGCTTTAAGA--------------------------AGT-TTT----GGTTTAT------GATAAGGAAAGTCA--------------------------------------------------------------------------------------------------------------------------------------------CCTGTCCGCAATTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000486474:460436-460505 + CTGGTGGGTCTGTACAGCAGTACGTACCAAAGTGAGGCGGGTGCTACAAGGTAATCTTTTT-AATT--------------------------TGT-TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779341:8577-8632 - CTAACGGGCGCCTACATCAGCAACTATACAAATGCTGAAGGTGTAGAAAAGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000299102:822480-822542 - CTGGTGGGCCTGTACAGCAGTACCTACCTGAATGAGGCGGGGGCTACCAGGTAATTTTGTA-GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415377:288871-288918 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCGGTCTCAGCT--GATGA---GAGA-GCTTT--------CCGGA----GAAGCTC------G-AATA---TC
droEug1 scf7180000409802:878018-878083 - TGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGC--TATTGAAAAGCCGGTCTCAGCT--GGTGA---GAGA-GCTTT--------CCGGA----GAAGCTC------G-AATATCGTG
dm3 chr3R:9130169-9130467 + CTGGTGGGCAGCTACATCAGCAACTACACGAATGCCGATGGAGTAGATAGGTGAGTAATTTTAAGG--------------------------TATA----TCTTGC----------GATGAC----------------AAA--CA-TTTTGTTAGCATGTCTAGACTAA----G----------------ATG--------------TCAGGT-ATCTTTATTATATCGT-ACTATTTATGTAGCTAAGATC--GTATCTAG-----TGCACTGTCCGCAACTAGTA----------------------------------------------------------------------------------------C-----------------GATTGCAAGCACA--------------------CTT-------GTGAATACCCC-CAATGCATT------------------------------------------------------------------------------------------------------------GGAGATCATCGCATG---------TT--------------------GGGGC--CATAAAAAAGCCGGTCTCAGCT--GATGA---GAGA-GCTTT--------CCGGA----GAAGCTC------G-AGTG---CC
droSim2 3r:12042541-12042853 - TTGGTGGGCAGTTACATTAGCAACTACACGAATGCCGATGGAGTTGATAGGTGAGTCATTTTAAGG--------------------------TATA----TCTTGT----------AGTGAC----------------TAA--CA-TGTTGTTAGCATGTCTAGACTAA----G----------------ATGCA-------AGATGTTAGGT-ACCTTTGTTAAGTCGT-ACTATTTATGTAGCTAAGATCTAGTATCTAGTAATCTGCTTTGTCCGCAACTAGTA----------------------------------------------------------------------------------------C-----------------GATTGCAAGCAGA--------------------CTT-------GTGAATACCCC-TAATGCATT------------------------------------------------------------------------------------------------------------GGAGATCACCGCATG---------TT--------------------GGGGC--CATAAAAAAGCCGGTCTCAGCT--GATGA---GAGA-GCTTT--------CCAGA----GAAGCTC------G-AATG---CC
droSec2 scaffold_0:12874101-12874413 - CTGGTGGGCAGCTACATCAGCAACTACACGAATGCCGATGGAGTTGATAGGTGAGTAATTCTAAGG--------------------------TATA----TCTTGT----------AGTGAA----------------TAA--CA-TGTTGTTAGCATGTCTAGACTAA----G----------------ATGCA-------AGATTTTAGGT-ATCTTTGTTAAGTCGT-AATATTTATGTAGCTAAGATCTAGTATCTAGTAATCTGCTTTGTCCGCAACTAGTA----------------------------------------------------------------------------------------C-----------------GATTGCAAGCAGA--------------------CTT-------GTGAATACCGC-TAATGCATT------------------------------------------------------------------------------------------------------------GGAGATCACCGCATG---------TT--------------------GGGGC--CACAAAAAAGCCGGTCTCAGCT--GATGA---GAGA-GCTTT--------CCGGA----GAAGCTC------G-AATG---CC
droYak3 3R:13435149-13435492 + CTGGTGGGCAGCTACATTAGCAACTACACGGATGCCGATGGACTGGATAGGTGAGTCATTTTTAGG--------------------------TATATTTATCTGGT----------AATGAG----------------GAA--GG-TTTTGTTGGCTGGTCTAGACTAA----G----------------ATGTG-------AGA---------ACCCTTCTTATGTCGGTAC------------------------------------------------------TTAAAACCAATAAGAGATTCACCGTCTTGGTTTGTAGCTTTCATTTAAATGGAATATAGATTTACGTGCCTTACATGTTTATCCAACGAACACCATATTATGTTAA-------------------------------------------GTGAATACCCC-CAATGCT-T------------------------------------------------------------------------------------------------------------GGAGCTCACTGCATG---------TT--------------------GGGGC--CTTAGAAAAGCCGGTCTCAGCT--GATGA---GAGA-GCTTT--------CCGGA----GAAGCTC------G-AATA---CC
droEre2 scaffold_4770:12517550-12517623 - CTGGTGGGCAGCTACATTAGCAACTACACGGATGCCAATAGAGTGGATAGGTGAGTAATTTTCAGA--------------------------TGT------CTGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTATATGGTGCCTACAGAAGCAGCTATACGGATGCGGAGGGCAATAAGAGGTGAGTTTATT-GAGG--------------------------CGT-TT-----AGTTCATAAGTTAGATAAAAAAAAAACCCACTACGCGCTTAAA------------ATCATAACTAAA----CTACGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------------------GTAAAAGCTCGTGAGCGTATTTACTCCTCTGACTGGTTAGTGCTTAATGAACT---------GG--------------------TGCGT--GTTCAATAAGCCGGTCTCAGCTACGCTGA---GCAA-AGCTT--------TCGGG----AGAGCTT------G-CACG---CGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................GAAGCAGCTATACGGATGCGGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
....................CAGCTATACGGATGCGGAGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.............................GGATGCGGAGGGCAATAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
...................GCAGCTATACGGATGCGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000010000000000000000000000000000000000000
......................GCTATACGGATGCGGAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
CTTATTGGCTCCTATAGAAGCAGCTATGTGGATGAAGAAGGCAACGAGAGGTGAGTTTAATTCGTA------------------------GGCATT----AAAAAC----------AGTGAG----------------TAC--AG-CTTATGAAAGACATCAAAACTGAACGTGCTGCATTGAGTAAAAGCTCTGCGTTCCCATTTTATCGAAAACTAAACCTAAATTGA-ACTTTATATGAGTCGAAGATCGTGAGCACAATT-GCAGCTCTATACGCT-CAAGTGCTAAAGCCAATAAGAGACAGAGCGCGTGA---------------------------------------------------------------------------------GCATGGTGC--------------------CAT-------CTCTATATGCC-AAATG--------------------------------------------------------------------------------------------------------------------CTCAATGAAGTGTCAGTGTGGTGGTGGTAAGCTG------AGCGCGACTGTTCAATAAGCCGGTCTCAGCT--GTTGC---GCGA-AGCTT--------TCGGG----AGAGCTT------G-CACG---CASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................CAGCTATGTGGATGAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
..........CCTATAGAAGCAGCTATGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
................................................................................................................................................................................................................................................................................................TAAAGCCAATAAGAGACAGA.........................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
CTTAATGGCGCCTATCGAAGCAGTTACACCGGTGCCGATGGCAAGCAGAGGTGAGTGTATTTA-TG--------------------------CATT----TCATAT----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGTCCCCC-TAATGCATTTGTGATGGAGTTGGTGCACTAAGATTAGTGAAAAGCTTATACTCAATGCTCATTGATCATAGTATTTTGAGTCAAAGCTTTTAAGTGAATACGCATTT--------------CTCACTGAATG---------CG------------------AGCGGGCCAGCACGCCATGCCGGTCTCAGCT--GTTGA---CAGAAGCTTT--------CCGTATTAAAAAGCTT------G-ATCG---CASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CTGACGGGAGCATATTTGACTGAATATACCACAGCTGATGGCGATAAACAGTAAGTAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATATTAT---CA-------------------------------------------ATGAATACCCC-TAATGCATGCCAT-TGGAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCCGGTCTCAGCT--GTTAGTGAATGA-AAGCT--------CAAGT----AAAGCTTAGGCTGCTGCTG---TASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.TGACGGGAGCATATTTGACTGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
....................TGAATATACCACAGCTGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..GACGGGAGCATATTTGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
............................CCACAGCTGATGGCGATAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
....CGGGAGCATATTTGACTGAATATACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
CTGACGGGAGCATATTTGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
dp5
CTGACGGGCAGCTACAGAAGCAGCTACACAGATGCCGCGGGCAATGAAAAGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTGACGGGCAGCTACAGAAGCAGCTACACAGATGCCGCGGGCAATGAAAAGTGAGTACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAGTTAA--------------------GTATTGAATACCGAATACCCC-AAATGCATGCGCT-TGGAGTTGGTG-------------------------------------------------------------------------------------------------------------------------------TTGATTCTCAGCT-----TGCTTCAAAGCCGGTCTCAGCT--GTTCAG--GCGA-GCTTCCACGAACGCAAAA----AAAGCTC------T-CCCT---CGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CTGACGGGAAGCTACATTAGCAGCTATGCCGGCGGCGATGGCATTTCAAAGTAAGTCGATTTTATGTCAAACTTTTTTGTGGGGTTCCTATGCAC-----AAAAAC----------TATG------------------CAC--AAATT----TATGACACAACAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACCATTGT---CAAATTATGAGCAAACATTCTTTTTAGATTTATTTCTT-------GAGAATATCCCTCAATGCCCGGCTT-GAGAGCT------------------------------------------------------------------------------------------------------ATTCGAAC---------------------TTTATTTT------TATTTTTTCAGAAGCCGGTCTCAGCT--GTTGA---GCGA-GCTTTT-------CCAGC--AAAAAGCTA------C-GCGA---TCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................CTATGCCGGCGGCGATGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.............ACATTAGCAGCTATGCCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............CATTAGCAGCTATGCCGGCGGCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.......GAAGCTACATTAGCAGCTATGCCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
droBip1
CTGACGGGCAGCTACCTTAGCAGCTATACCGGCAGCGAAGGAATTGTAAAGTAAGTATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTCACTGGAAGCTATATCAGCAACTACACGGATGCCAGCGGAAATGTCAAGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTGTCGGGCAGCTACATTAGCAACTACACCAATGCCCAAGGGGTTGCAAGGTAAGTTGCTTTAAGA--------------------------AGT-TTT----GGTTTAT------GATAAGGAAAGTCA--------------------------------------------------------------------------------------------------------------------------------------------CCTGTCCGCAATTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTGGTGGGTCTGTACAGCAGTACGTACCAAAGTGAGGCGGGTGCTACAAGGTAATCTTTTT-AATT--------------------------TGT-TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTAACGGGCGCCTACATCAGCAACTATACAAATGCTGAAGGTGTAGAAAAGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CTGGTGGGCCTGTACAGCAGTACCTACCTGAATGAGGCGGGGGCTACCAGGTAATTTTGTA-GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCGGTCTCAGCT--GATGA---GAGA-GCTTT--------CCGGA----GAAGCTC------G-AATA---TCSizeHit CountTotal NormTotal
No Reads
droEug1
TGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGC--TATTGAAAAGCCGGTCTCAGCT--GGTGA---GAGA-GCTTT--------CCGGA----GAAGCTC------G-AATATCGTGSizeHit CountTotal NormTotal
No Reads
dm3
CTGGTGGGCAGCTACATCAGCAACTACACGAATGCCGATGGAGTAGATAGGTGAGTAATTTTAAGG--------------------------TATA----TCTTGC----------GATGAC----------------AAA--CA-TTTTGTTAGCATGTCTAGACTAA----G----------------ATG--------------TCAGGT-ATCTTTATTATATCGT-ACTATTTATGTAGCTAAGATC--GTATCTAG-----TGCACTGTCCGCAACTAGTA----------------------------------------------------------------------------------------C-----------------GATTGCAAGCACA--------------------CTT-------GTGAATACCCC-CAATGCATT------------------------------------------------------------------------------------------------------------GGAGATCATCGCATG---------TT--------------------GGGGC--CATAAAAAAGCCGGTCTCAGCT--GATGA---GAGA-GCTTT--------CCGGA----GAAGCTC------G-AGTG---CCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................AGCAACTACACGAATGCCGATGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2419.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014002000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------------GGAGATCATCGCATG---------TT--------------------GGGGC--CAT................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTGGTGGGCAGCTACATCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ACTACACGAATGCCGATGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AGATAGGTGAGTAATTTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................T-ACTATTTATGTAGCTAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAAAGCCGGTCTCAG...............................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................GT-ACTATTTATGTAGCTAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTGGTGGGCAGCTACATCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................ACA--------------------CTT-------GTGAATACCCC-CAA..........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GATAGGTGAGTAATTTTAAGG--------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TACACGAATGCCGATGGAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....GGGCAGCTACATCAGCAACTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CGAATGCCGATGGAGTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.............................GAATGCCGATGGAGTAGATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGCAACTACACGAATGCCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCAACTACACGAATGCCGATGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ATGCCGATGGAGTAGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGCCGGTCTCAGC..............................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AATGCCGATGGAGTAGATAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTGGTGGGCAGCTACATCAGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTGGTGGGCAGCTACATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................ATC--GTATCTAG-----TGCACTGTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AATGCCGATGGAGTAGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
......................ACTACACGAATGCCGATGGAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.....................AACTACACGAATGCCGATGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAGCAACTACACGAATGCCGATGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATT------------------------------------------------------------------------------------------------------------GGAGATCATCGCATG---------T...............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCTACATCAGCAACTACACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TAGTA----------------------------------------------------------------------------------------C-----------------GATTGCAAGCACA--------------------CT.................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCATG---------TT--------------------GGGGC--CAAC...............................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.................................................GGTGAGTAATTTTAAGG--------------------------TATA----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
droSim2
TTGGTGGGCAGTTACATTAGCAACTACACGAATGCCGATGGAGTTGATAGGTGAGTCATTTTAAGG--------------------------TATA----TCTTGT----------AGTGAC----------------TAA--CA-TGTTGTTAGCATGTCTAGACTAA----G----------------ATGCA-------AGATGTTAGGT-ACCTTTGTTAAGTCGT-ACTATTTATGTAGCTAAGATCTAGTATCTAGTAATCTGCTTTGTCCGCAACTAGTA----------------------------------------------------------------------------------------C-----------------GATTGCAAGCAGA--------------------CTT-------GTGAATACCCC-TAATGCATT------------------------------------------------------------------------------------------------------------GGAGATCACCGCATG---------TT--------------------GGGGC--CATAAAAAAGCCGGTCTCAGCT--GATGA---GAGA-GCTTT--------CCAGA----GAAGCTC------G-AATG---CCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........AGTTACATTAGCAACTACACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...........................ACGAATGCCGATGGAGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.......................CTACACGAATGCCGATGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.......................CTACACGAATGCCGATGGAGTTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.........................ACACGAATGCCGATGGAGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.............................................................................................ATA----TCTTGT----------AGTGAC----------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16100.60600000000006000000
..............................................................................................TA----TCTTGT----------AGTGAC----------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15100.40400000010003000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGGTCTCAGT..............................................................1580.13100000000100000000
droSec2
CTGGTGGGCAGCTACATCAGCAACTACACGAATGCCGATGGAGTTGATAGGTGAGTAATTCTAAGG--------------------------TATA----TCTTGT----------AGTGAA----------------TAA--CA-TGTTGTTAGCATGTCTAGACTAA----G----------------ATGCA-------AGATTTTAGGT-ATCTTTGTTAAGTCGT-AATATTTATGTAGCTAAGATCTAGTATCTAGTAATCTGCTTTGTCCGCAACTAGTA----------------------------------------------------------------------------------------C-----------------GATTGCAAGCAGA--------------------CTT-------GTGAATACCGC-TAATGCATT------------------------------------------------------------------------------------------------------------GGAGATCACCGCATG---------TT--------------------GGGGC--CACAAAAAAGCCGGTCTCAGCT--GATGA---GAGA-GCTTT--------CCGGA----GAAGCTC------G-AATG---CCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..GGTGGGCAGCTACATCAGCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
droYak3
CTGGTGGGCAGCTACATTAGCAACTACACGGATGCCGATGGACTGGATAGGTGAGTCATTTTTAGG--------------------------TATATTTATCTGGT----------AATGAG----------------GAA--GG-TTTTGTTGGCTGGTCTAGACTAA----G----------------ATGTG-------AGA---------ACCCTTCTTATGTCGGTAC------------------------------------------------------TTAAAACCAATAAGAGATTCACCGTCTTGGTTTGTAGCTTTCATTTAAATGGAATATAGATTTACGTGCCTTACATGTTTATCCAACGAACACCATATTATGTTAA-------------------------------------------GTGAATACCCC-CAATGCT-T------------------------------------------------------------------------------------------------------------GGAGCTCACTGCATG---------TT--------------------GGGGC--CTTAGAAAAGCCGGTCTCAGCT--GATGA---GAGA-GCTTT--------CCGGA----GAAGCTC------G-AATA---CCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................AACTACACGGATGCCGATGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.................................GCCGATGGACTGGATAGGTGAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
........CAGCTACATTAGCAACTACACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.........................ACACGGATGCCGATGGACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
............TACATTAGCAACTACACGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................ACACGGATGCCGATGGACTGGATAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
........................TACACGGATGCCGATGGACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEre2
CTGGTGGGCAGCTACATTAGCAACTACACGGATGCCAATAGAGTGGATAGGTGAGTAATTTTCAGA--------------------------TGT------CTGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................CTACACGGATGCCAATAGAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0021000010
.....................AACTACACGGATGCCAATAGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000200
................................TGCCAATAGAGTGGATAGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
............TACATTAGCAACTACACGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.....................AACTACACGGATGCCAATAGAGTGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100

Generated: 05/16/2015 at 08:08 PM