ID:

dvi_3493

 Coordinate:

scaffold_12855:2119996-2120146 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_10390:12]; CDS [Dvir\GJ10467-cds]; intron [Dvir\GJ10467-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACACGACGTGCACTCCAGGTGCTGGGCTGTCCCCATGGCTGCAACGATGGTAAGTGCCTTACACATAAATAAGCCAGAAAACTAGAGCTAGAATTAAACTAAAATTTAAATTAACGAGAAAAAACGGATAGACGGATATGGCTATATCGACTCGGCGGTTGATACTGATCAAGAATATATATAATTTACGGGGTCGGAGATGTCTTCTTCTATGCGTTTCATATTTCACGAAAAAATTATAATACCATCT
**************************************************(((((...))))).........(((((.....(((....)))..(((((......)))))...............((......))....))))).((((((((....))))))))((((((..((((.......))))....))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060687
9_0-2h_embryos_total
 SRR1106728
larvae
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR060688
160_ovaries_total
.......................TGGGCTTTCCCGAAGGCTGCA............................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................ACGCTGGTAAGAGCCTGAC............................................................................................................................................................................................ 19 3 12 0.08 1 0 1 0 0 0 0 0 0 0
................................CCCATGGTTGCAACG............................................................................................................................................................................................................ 15 1 15 0.07 1 0 0 1 0 0 0 0 0 0
..............................................GATGGTAAGCGCGTCACAC.......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................TCGGAGATGTCTTCTTCTATG.................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0
................................................TGGTAAGTGCCTGACCGA......................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.....GATGAGCAATCCAGGTGC.................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................GGAGATGTCTTCTTCTATGCG.................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1
...............CCAGGTGCTTGGATGTCC.......................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TTGTGCTGCACGTGAGGTCCACGACCCGACAGGGGTACCGACGTTGCTACCATTCACGGAATGTGTATTTATTCGGTCTTTTGATCTCGATCTTAATTTGATTTTAAATTTAATTGCTCTTTTTTGCCTATCTGCCTATACCGATATAGCTGAGCCGCCAACTATGACTAGTTCTTATATATATTAAATGCCCCAGCCTCTACAGAAGAAGATACGCAAAGTATAAAGTGCTTTTTTAATATTATGGTAGA
**************************************************(((((...))))).........(((((.....(((....)))..(((((......)))))...............((......))....))))).((((((((....))))))))((((((..((((.......))))....))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 V053
head
 SRR060687
9_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 SRR060683
160_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 M027
male body		 SRR060673
9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
..............AGGTCCAAGGCCCTACAGGGG........................................................................................................................................................................................................................ 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AGCCGCCAACTATGACTAGTTCTTA.......................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TGCCTATCTGCCTATACCGATATAGG..................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CTATATATTAAATGCCCCAGCCTCTACA............................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AAATTTAATTGCTCTTTCT............................................................................................................................... 19 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CCAGCCTCTACAGAAGAAGATACGCA................................. 26 0 20 0.10 2 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................TCTGCCTATACCGATATAGCTGAG................................................................................................. 24 0 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................CTGCCTATACCGATATAGCTG................................................................................................... 21 0 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................TCTGCCTATACCTATATAGCTGAGC................................................................................................ 25 1 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................CCCCAGCCTCTACAGAAGAAGATACGCAA................................ 29 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CCCCAGCCTCTACAGAAGAAGATACGCA................................. 28 0 18 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................CAGCCTCTACAGAAGAAGATACGCAA................................ 26 0 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................AGCCTCTACAGAAGAAGAT...................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CAACTATGACTAGTTCTTATATATA.................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................TGCCTATACCGAAATAGCTGAGCCG.............................................................................................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................GCCTCTACAGAAGAAGATACGCAA................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................CTACAGAAGAAGATACGC.................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ACTATGACTAGTTCTTATATAT..................................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCTACAGAAGAAGATACGCAA................................ 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:2119946-2120196 - dvi_3493 AACACGACGTGCACTCCAGGTGCTGGGCTG----TCCCCATGGCTGCAA---------------------------CGATGGTAAGTGCCT-----------------------------T-----------AC-------------------------------ACATAAAT-AAGCCAGAAAACT-----AGAGCTAG-----------------------------------AA-----------------------TTAAA---CTAAAA-----------------------------------------TTTA------AAT----------------TAACGAGAAAAA--------ACGGA----------TAGACGGATATGGCTATATCGACTCGGCGGTTGATACTGATCAAGAATATAT----ATAATTTACGGGGTCGGAGATGTCTTCTTCTATGCGTTTCATATTTC-------ACGAAAAAATTATAATACCA------TCT
droMoj3 scaffold_6500:30934359-30934555 + GT---GCT-----------------------------------------------------------------------------------------ATACACGG-A---------------------------------------------------------------C-----------------------------------------------CTAG------GAAAAAAAATTTCATAT--------------C-----AAT------------ATCTT------------------------------------------CT--GAGATCGACGCGTTCA----AACAT--------ACGGA----------CAGACGGACAGGGCCAAATCGACTCAGCTCGTCGCCCTGATCAAGAATATAT----ATACTTTATGGGGTCTGCCACGCCTCCTTCTGCCTGTTACATACATT-------C-AACAAAACCATTATACCCATA---TTT
droGri2 scaffold_15110:16564926-16565163 + GA---T----------------------TG----TTCCTATGGCTTCTGT-----A------------------------------------------TG----ATATAGT------------GGGTCCGGTACG---CATC-------GACGCCCTTTG------------TGAAGCAATA-----AGACTATA-----------------CGTGGCG----------------AGTTTC----------------------------------------------A--------ACT--------------TA----------ATCA---------AAA----AATGAGTACAG--------ACACA----------CAGACGGACATGGCTATATCGAGTCGGCTAGTGATGCTCATCAAGAATATAT----AAA-TATACGGGTTCGTCGACGTCTCCTTTCATTCGT-GCACATCTA-------ACGACAAAATTATTATATCC------TCT
droWil2 scf2_1100000004837:799865-800070 + CT---G-----------------------G-----CCCTTTGGTT---------------------------------------------------TG----------------------G-----------TAAGGT--------------------GTAA---AAAAAAAA-TAGCAAAA---------------------------------------------------A-------------------------------AAC---------------CTTAG-------------------AATTG---GAATAATTTAAGC----------------CAA--------GACCGACGGATGGACATAAACAATAAGCATGTCATGGCTGCATCGACTCAG---------CTGATGAAGAATATAT----A----TTATGGGGTCGGAAATGTCTCCTTCTCTGCGTTACAAACATC-------TGATCAATTTTATAATACCT------TCT
dp5 Unknown_group_6:58148-58383 - GC---T-----------------------G----TACTCATGCC----------------------------------------------------TGTATACGG-A--------T--AAT-----------TCACAT--------------------AG-----------ACA------------------------------AACCAATTAATTTTGTAG------GGA--------------CGGAAATTTTGAAAC-----AATTTTGAATTTTGA----------------------------A----------------TTT----------------TGAT--------ACGGGTGTCCGAA----------CAGGCTGACATGGGTTTATCGACTCGATTATTTATGCTGATCACGAACATAA----ATACTTTATGGGGTCGGAAATGCTTTCTTTTGGGTGTTGCGTACATCCACTTTTACCACAAATCTAATATACC----------
droPer2 scaffold_43:229616-229851 - GC---T-----------------------G----TACTCATGCC----------------------------------------------------TGTATACGG-A--------T--AAT-----------TCACAT--------------------AG-----------ACA------------------------------AACCAATTAATTTTGTAG------GGA--------------CGGAAATTTTGAAAC-----AATTTTGAATTTTGA----------------------------A----------------TTT----------------TGAT--------ACGGGTGTCCGAA----------CAGGCTGACATGGGTTTATCGACTCGATTATTTATGCTGATCACGAACATAA----ATACTTTATGGGGTCGGAAATGCTTTCTTTTGGGTGTTGCGTACATCCACTTTTACCACAAATCTAATATACC----------
droAna3 scaffold_13137:752952-753156 + TG---C-----------------------A---------------------------------------------ATAACG-------------------------------------------------------------------GTAAGGTG---GCTGAGAGCTAGAT-TTGCCAGC---------------------------------------------------A-------------------------------AAC------------AGTAG--------------------------TAGAGACTGGTTTGCGT----------------AGAA--------ACAGACAGACGGA----------CAGACAGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATATAT----ATACTTTATAGGGTCGGAGATGTCTTCTTCACTGCGTTGCACACTTT-------TGATCTAAATTATAATACCC------TTT
droBip1 scf7180000395410:33545-33735 + CC---T-----------------------TATATTAAA--T---------------------------AATTGCAACAAAC-------------------------------------------------------------------ACA--------------------------------------------AGTAA-----------------------------------AA-----------------------------------------------------------------TGC--AACAAAGATACTAGTTTGCGT----------------AGA--------A--------ACAGA----------CAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATATAT----ATACTTTATAGGGTCGGAGATGTCTTCTTCACTGCGTTGCTCACTTT-------TAGACAAAATTATAACATCT------TCT
droKik1 scf7180000301603:2948-3179 - CC---C---------------------------------ATGGGCGCTA-------------------------------------------------TG----ACACTGGGCGTTAT-----------GACATG---CACCCATATA-GAAGACT------------------------------------ATATT-------------------------------C----AAAGTTTCATTC--------------A-----GAT------------AGCTTTAA-------------------AACTGAGGGACTAGTTTGCGT----------------AGA--------A--------ACGGA----------CAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATAT----ATACTTTATAGGGTCGGAAAGGTTTCCTTCACTGCGTTGGAAACTTC-------TGACTGAAATTATAATACCC------T--
droFic1 scf7180000453435:46993-47243 - AT---A-----------------------G----CTGCCATAGC----------------------------------------------------TATG---GC-A--------TATCTTATGCATAGGAAAGA---TAGT--------AAAACT------------------------------------TTTGG-------------------------------T----AAAATTTCAGCA--------------A-----GAT------------AGCTTTAA-------------------AACTGAGAGACTAATTTGCGT----------------AGAA--------ACAAACAGGAGGA----------CAGACGAACAGACGTATTTCGACTCGGATCGTGATGCTGATCAAGAATACATACATATACTTTATGGGGTCTGATGTGTCTCCTTCAATGCGTTGCAAACTTC-------TGAGTGAAATTATAATACGCTTTTGCTCT
droEle1 scf7180000490993:664143-664374 - AT---GATTTGCAGCTCAATTATTTGATCG----TTTCTATGGCAGCTAT-----A------------------------------------------TG----GTATCGT------------TTTT-----CG-------------------------------ATTTTAAT-A------------AA----------------------------------------------------------------------------------------------AT------TAAAAGCGTAATTCTGAACT----------------G-TCAA------GTTA-TTA--------A--------TTAAT----------CAAAACGACATGGCTAGATCGACTCTCCTAGTGATGCTGATCAGGAATATAT----ATACTTTATATGGTCGGAAATGTCTCCTTCACTACGTTGCAAACTTC-------TGACTGAAATTATAATACCT------TCT
droRho1 scf7180000764976:285-524 - GA---T----------------------TG----TTCCTATGGCTGCTCCATTCA-AACTTATATACCACCTACAACAGAA-------------------------------------------------------------------AGAAGAAT------------------------------------ATT-G-------------------------------T----AAAGCTACATTT--------------A-----AAT------------AGCTTTAA-------------------AACTGGGGGA--------CTC----------------AGAA--------ACAGATAAACGGA----------CGGACGGTCTTGGCTAGATCGACTCGCCTGGTGACGCTGATCAAGAATATAT----ATGCTATATAGCGCCGGAAATGTGCCCTTCAATGTGTTGCTTACTTT-------TGACTAACATTATAATACCG------CCT
droBia1 scf7180000302397:39861-40071 - CT---T-----------------------GACTGTTCG--C---------------------------ACCTGCAATGGAG-------------------------------------------------------------------GGAAGACT------------------------------------TTTGG-------------------------------G----AAAGTTTCAGCC--------------T-----GAT------------AGCATTAA-------------------AGCTGAGAGGCGAGTTTGCGT----------------GGA--------A--------ACGGA----------CAGACGGA-----CTAGATTAACTCGTCTAGTGATATTGATCAGGAATATAT----ATACTTTATGGGGTCGGATACGTCTCCTTCTCTGCGTTGCAAACTTC-------TGACTGAAATTATTATACCC------TCT
droTak1 scf7180000415259:47469-47686 + CG---T----------------------TA---------------------------------------------------ATAAATATTTTAAACAGCCCACGG-G----------------------------------------------------------TACTAATT-AAAATAAAATATT-----ATTATTTG-----------------------------------TG-----------------------CTAAA----------------------------------------------TAAAAACTAGTTTGCGT----------------AGA----AACGG--------ACGGA----------CAGACGGACATGGCTAGATCGACTCGTCTAGTGATGCTGATCAAGAATATAT----ATACTTTATGGGGTCGGAAACGTCTCCTTGACTGCGTTGCAAACTTC-------TGACTGAAATCATAATACCC------TCT
droEug1 scf7180000408984:484965-485130 - TA---A-----------------------A------A--------------------------------------------------------------------------------------------------------------------------------------AT-A------------TA----------------------------------------------------------------------------------------------AC------TAAAAACA--------------GAAACA-------------------AACTGTTGA----AACAG--------ACGGA----------CAGACGGACATAGCTATATCGACTCC-CTATTGATCCTGATCAAGAATATAT----ATACAATATAGGGTCGGAAACGTCTCCTTCACTGCGTTACAAACTTC-------TGACCAAAATTATAATACCC------TCT
dm3 chr3R:146330-146521 - AA---G-----------------------A----GCACTATACA------------TACATATGTA-----------------------------------------------------------------------------------------CTTCG---------------------ATTGCT-----TGAGCTAT-----------------------------------AT-----------------------TGTAG---CAAATA---------TTTAAACCCTGGCAAAAAATGTG----------------------------------------------------------------------------------AATTAGATATTGACTTGGCTGGCGATATTGATCAGGAATAGAT----ATACTTGATATGGTCGCAAATATCTCCACCACTGCGTTAAAACCTTC-------TAACTGAAATTAATATACAT------TCT
droSim2 2l:21019243-21019406 + TA---GAT-----------------------------------------------------------------------------------------AT-----------------------------------AAAT--------------------GG----------------GCA-------------------------AAACAACT-----------------------------------------------------------------------------------------------------------GATTTAATC----------------CAAA--AAAAGC--------AAGGA----------CTGACAGACATGGTCAGATCGACTCAGCTATTGATCCTGATCAAGAATATAT----ATACTTTATATGGTCAGAAACGCTTCCTTCTGCTTATTACTCAGTTT-------TCAACGAATCTAGTATA------------
droSec2 scaffold_6:151262-151462 - AA---T-----------------------G------------CC----------------------------------------------------TAT---CGA-A--------T--AAG-----------TAATGA--------------------GG-----------AAA------------------------------GAACTATAATCGTTGGGCTTCTACT----CAAAATTCATGACGAA----------------------------------------------------------------------AGTTTG--------------------GG--------A--------GCAAT----------CGGACGGACAGGATCAGATCGACTCGGCTATTGATCCAGATCAAGAATAT------ATACTTTATATGGTCGGAAACGG--CCTTCGGCCTTTTACATACTTT-------TCAACGAATCTAGTATACCC------TTT
droYak3 v2_chrUn_1802:259-467 + GA---T-----------------------A---------------------------------------------------ATAAGTCACT-----------------------------G-----------TC-------------------------------TTTTAAGT-AAGATGAAAAATG-----CAAGGATGTGCAAAGC-------------------------A-------------------------------AAC-CTGGT-----------------------------------------ATAA------GCC----------------AGAT--------GCAGACGGACGGA----------CAGACGGACATGGCCAGATCGACTCGGCTATTGATCCTGATCAAGAATATAT----ATACTTTATATGGTCGGAAACAGTTTCTTCTGACTGTTACATACGTT-------TCAACGAATCTAGTATACCC------TTT
droEre2 scaffold_4929:23711324-23711511 - AA---T-----------------------G------------CT----------------------------------------------------TGTAAATGC-T--------A--TAT-----------AAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAAAACAATTTAAAATT--GTT----------TCT--AA------------GG----TACGG--------ACGGA----------CCGATGGACATGGTCAGATCGACTCGGCTATTGATCCGGATCAACAATAAAA----ATACTTTATATGGTCGGAAACGCATTCTTCTGCCTGTTCCATACTTT-------TCAACGAATCTAGTATAGCCT-----TTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AACACGACGTGCACTCCAGGTGCTGGGCTG----TCCCCATGGCTGCAA---------------------------CGATGGTAAGTGCCT-----------------------------T-----------AC-------------------------------ACATAAAT-AAGCCAGAAAACT-----AGAGCTAG-----------------------------------AA-----------------------TTAAA---CTAAAA-----------------------------------------TTTA------AAT----------------TAACGAGAAAAA--------ACGGA----------TAGACGGATATGGCTATATCGACTCGGCGGTTGATACTGATCAAGAATATAT----ATAATTTACGGGGTCGGAGATGTCTTCTTCTATGCGTTTCATATTTC-------ACGAAAAAATTATAATACCA------TCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGATGTCTTCTTCTATG.................................................21200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATGTCTTCTTCTATGCG...............................................21200.051000000000000000000000000000000000000001000000000000000000000000
droMoj3
GT---GCT-----------------------------------------------------------------------------------------ATACACGG-A---------------------------------------------------------------C-----------------------------------------------CTAG------GAAAAAAAATTTCATAT--------------C-----AAT------------ATCTT------------------------------------------CT--GAGATCGACGCGTTCA----AACAT--------ACGGA----------CAGACGGACAGGGCCAAATCGACTCAGCTCGTCGCCCTGATCAAGAATATAT----ATACTTTATGGGGTCTGCCACGCCTCCTTCTGCCTGTTACATACATT-------C-AACAAAACCATTATACCCATA---TTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGGGGTCTGCCACGCCTCCTT......................................................25202.25454500000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGCCTGTTACATACATT-------.............................21200.408800000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGGGGTCTGCCACGCCTCCT.......................................................24200.408000080
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTCTGCCACGCCTCCTTCTGC..................................................25200.153000030
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------C-AACAAAACCATTATACCCA........22170.122200000
.......................................................................................................................................................................................................................................................................................................................................................TTCA----AACAT--------ACGGA----------CAGACGGACAGG...............................................................................................................................26200.102200000
..................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCCAAATCGACTCAGCTCGTCGC........................................................................................................28200.102000020
.......................................................................................................................................................................................................................................................................................................................................................................................................GCCAAATCGACTCAGCTCGTC..........................................................................................................21200.051010000
........................................................................................................................................................................................................................................................................................................................................T--GAGATCGACGCGTTCA----AACAT--------ACGG......................................................................................................................................................26200.051100000
........................................................................................................................................................................................................................................................................................ATCTT------------------------------------------CT--GAGATCGACGCGTTCA----AAC....................................................................................................................................................................26200.051000010
...........................................................................................................................................................................................................................................................................T------------ATCTT------------------------------------------CT--GAGATCGACGCGTTCA----AA.....................................................................................................................................................................26200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................................CCAAATCGACTCAGCTCGTCGCCCT.....................................................................................................25200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGGTCTGCCACGCCT..........................................................18200.051100000
........................................................................................................................................................................................................................................................................................................................................................TCA----AACAT--------ACGGA----------CAGACGGACAGGGC.............................................................................................................................27200.051100000
..........................................................................................................................................................................................................................................................................................................................................................A----AACAT--------ACGGA----------CAGACGGACAGGG..............................................................................................................................24200.051100000
..........................................................................................................................................................................................................................................................................................CTT------------------------------------------CT--GAGATCGACGCGTTCA----AACAT--------..........................................................................................................................................................26200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................AATCGACTCAGCTCGTCGCCCTGATCAA...............................................................................................28200.051100000
..................................................................................................................................................................................................................................................................................................................................................ACGCGTTCA----AACAT--------ACGGA----------CA.........................................................................................................................................21200.051000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCACGCCTCCTTCTGC..................................................20200.051100000
droGri2
GA---T----------------------TG----TTCCTATGGCTTCTGT-----A------------------------------------------TG----ATATAGT------------GGGTCCGGTACG---CATC-------GACGCCCTTTG------------TGAAGCAATA-----AGACTATA-----------------CGTGGCG----------------AGTTTC----------------------------------------------A--------ACT--------------TA----------ATCA---------AAA----AATGAGTACAG--------ACACA----------CAGACGGACATGGCTATATCGAGTCGGCTAGTGATGCTCATCAAGAATATAT----AAA-TATACGGGTTCGTCGACGTCTCCTTTCATTCGT-GCACATCTA-------ACGACAAAATTATTATATCC------TCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CT---G-----------------------G-----CCCTTTGGTT---------------------------------------------------TG----------------------G-----------TAAGGT--------------------GTAA---AAAAAAAA-TAGCAAAA---------------------------------------------------A-------------------------------AAC---------------CTTAG-------------------AATTG---GAATAATTTAAGC----------------CAA--------GACCGACGGATGGACATAAACAATAAGCATGTCATGGCTGCATCGACTCAG---------CTGATGAAGAATATAT----A----TTATGGGGTCGGAAATGTCTCCTTCTCTGCGTTACAAACATC-------TGATCAATTTTATAATACCT------TCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTACAAACATC-------TGATCAATTT...................25202.0541235040
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTACAAACATC-------TGATCAATT....................24200.25505000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----A----TTATGGGGTCGGAA................................................................2160.17101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTACAAACATC-------TGATCAAT.....................21200.10201010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAACATC-------TGATCAATTTTATA...............24200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTACAAACATC-------TGATCAATT....................22200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTACAAACATC-------TGATCAATTTTAT................28200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACATC-------TGATCAATTTTATAATA............25200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACATC-------TGATCAATTTTATAATA............26200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTACAAACATC-------TGATCAATTTT..................25200.05101000
dp5
GC---T-----------------------G----TACTCATGCC----------------------------------------------------TGTATACGG-A--------T--AAT-----------TCACAT--------------------AG-----------ACA------------------------------AACCAATTAATTTTGTAG------GGA--------------CGGAAATTTTGAAAC-----AATTTTGAATTTTGA----------------------------A----------------TTT----------------TGAT--------ACGGGTGTCCGAA----------CAGGCTGACATGGGTTTATCGACTCGATTATTTATGCTGATCACGAACATAA----ATACTTTATGGGGTCGGAAATGCTTTCTTTTGGGTGTTGCGTACATCCACTTTTACCACAAATCTAATATACC----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATCACGAACATAA----ATACTTTA...........................................................................2611.0010000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTATGGGGTCGGAAATG.............................................................21170.1830300000000
droPer2
GC---T-----------------------G----TACTCATGCC----------------------------------------------------TGTATACGG-A--------T--AAT-----------TCACAT--------------------AG-----------ACA------------------------------AACCAATTAATTTTGTAG------GGA--------------CGGAAATTTTGAAAC-----AATTTTGAATTTTGA----------------------------A----------------TTT----------------TGAT--------ACGGGTGTCCGAA----------CAGGCTGACATGGGTTTATCGACTCGATTATTTATGCTGATCACGAACATAA----ATACTTTATGGGGTCGGAAATGCTTTCTTTTGGGTGTTGCGTACATCCACTTTTACCACAAATCTAATATACC----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................AT--------ACGGGTGTCCGAA----------CAGGCT.....................................................................................................................................2111.001001000
droAna3
TG---C-----------------------A---------------------------------------------ATAACG-------------------------------------------------------------------GTAAGGTG---GCTGAGAGCTAGAT-TTGCCAGC---------------------------------------------------A-------------------------------AAC------------AGTAG--------------------------TAGAGACTGGTTTGCGT----------------AGAA--------ACAGACAGACGGA----------CAGACAGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATATAT----ATACTTTATAGGGTCGGAGATGTCTTCTTCACTGCGTTGCACACTTT-------TGATCTAAATTATAATACCC------TTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGATGTCTTCTTCACTGCGTTG............................................26200.204400000
.............................................................................................................................................................................................................................................................................................................................................................................................GACAGACATGCTCATATCGACT...................................................................................................................22200.153000003
.....................................................................................................................................................................................................................................................................................................................................................................................................TGCTCATATCGACTCAGGAGG............................................................................................................21200.153003000
...........................................................................................................................................................................................................................................................................................................................................................................GACGGA----------CAGACAGACATGCTCATATC.......................................................................................................................26200.153030000
...........................................................................................................................................................................................................................................................................................................................GACTGGTTTGCGT----------------AGAA--------ACAGAC............................................................................................................................................................2380.131010000
....................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCATATCGACTCAGGAGG............................................................................................................22200.102002000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTTCTTCACTGCGTTGCACACT......................................25200.102200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTTCTTCACTGCGTTGC...........................................21200.102200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTATAGGGTCGGAGATGTCTTC........................................................26200.102020000
......................................................................................................................................................................................................................................................................................................................................................................AGACAGACGGA----------CAGACAGACATGCTC............................................................................................................................26130.081000001
..........................................................................................................................................................................................................................................................................................................................AGACTGGTTTGCGT----------------AGAA--------AC................................................................................................................................................................20140.071000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATAGGGTCGGAGATGTCTTCTTCAC...................................................28200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGGTCGGAGATGTCTTCTTCAC...................................................24200.051001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATAGGGTCGGAGATGTCTTCTTC.....................................................26200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................GA----------CAGACAGACATGCTCATATCGACTCA.................................................................................................................28200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTCGGAGATGTCTTC........................................................18200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGATGTCTTCTTCACTGCGTTGCA..........................................28200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATAGGGTCGGAGATGTCTTCT.......................................................25200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGGGTCGGAGATGTCTTCTTC.....................................................25200.051001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGATGTCTTCTTCACTGCGTTGC...........................................27200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................CAGACAGACATGCTCATATCGACTCAG................................................................................................................27200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCATATCGACTCAGGA..............................................................................................................20200.051000001
...................................................................................................................................................................................................................................................................................................................................TGCGT----------------AGAA--------ACAGACAGACGGA----------...........................................................................................................................................22200.051000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGGGTCGGAGATGTCTTCTTC.....................................................24200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCACTGCGTTGCACACTTT-------TG...........................26200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................ACATGCTCATATCGACTCAGG...............................................................................................................21200.051000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGGTCGGAGATGTCTTCTTC.....................................................23200.051010000
..............................................................................................................................................................................................................................................................................................................................TGGTTTGCGT----------------AGAA--------ACAGG.............................................................................................................................................................19200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATAGGGTCGGAGATGTCTTCTTCA....................................................27200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGTCTTCTTCACTGCG...............................................20200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGGGTCGGAGATGTCTTCTTCA....................................................26200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTATAGGGTCGGAGATGTCTT.........................................................25200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCATATCGACTCAGGAGGTGAT........................................................................................................26200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................AGACAGACATGCTCATATCGA.....................................................................................................................21200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGATCAAGAATATAT----A..................................................................................21200.051100000
droBip1
CC---T-----------------------TATATTAAA--T---------------------------AATTGCAACAAAC-------------------------------------------------------------------ACA--------------------------------------------AGTAA-----------------------------------AA-----------------------------------------------------------------TGC--AACAAAGATACTAGTTTGCGT----------------AGA--------A--------ACAGA----------CAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATATAT----ATACTTTATAGGGTCGGAGATGTCTTCTTCACTGCGTTGCTCACTTT-------TAGACAAAATTATAACATCT------TCTSizeHit CountTotal NormTotal
No Reads
droKik1
CC---C---------------------------------ATGGGCGCTA-------------------------------------------------TG----ACACTGGGCGTTAT-----------GACATG---CACCCATATA-GAAGACT------------------------------------ATATT-------------------------------C----AAAGTTTCATTC--------------A-----GAT------------AGCTTTAA-------------------AACTGAGGGACTAGTTTGCGT----------------AGA--------A--------ACGGA----------CAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATAT----ATACTTTATAGGGTCGGAAAGGTTTCCTTCACTGCGTTGGAAACTTC-------TGACTGAAATTATAATACCC------T--SizeHit CountTotal NormTotal
No Reads
droFic1
AT---A-----------------------G----CTGCCATAGC----------------------------------------------------TATG---GC-A--------TATCTTATGCATAGGAAAGA---TAGT--------AAAACT------------------------------------TTTGG-------------------------------T----AAAATTTCAGCA--------------A-----GAT------------AGCTTTAA-------------------AACTGAGAGACTAATTTGCGT----------------AGAA--------ACAAACAGGAGGA----------CAGACGAACAGACGTATTTCGACTCGGATCGTGATGCTGATCAAGAATACATACATATACTTTATGGGGTCTGATGTGTCTCCTTCAATGCGTTGCAAACTTC-------TGAGTGAAATTATAATACGCTTTTGCTCTSizeHit CountTotal NormTotal
No Reads
droEle1
AT---GATTTGCAGCTCAATTATTTGATCG----TTTCTATGGCAGCTAT-----A------------------------------------------TG----GTATCGT------------TTTT-----CG-------------------------------ATTTTAAT-A------------AA----------------------------------------------------------------------------------------------AT------TAAAAGCGTAATTCTGAACT----------------G-TCAA------GTTA-TTA--------A--------TTAAT----------CAAAACGACATGGCTAGATCGACTCTCCTAGTGATGCTGATCAGGAATATAT----ATACTTTATATGGTCGGAAATGTCTCCTTCACTACGTTGCAAACTTC-------TGACTGAAATTATAATACCT------TCTSizeHit CountTotal NormTotal
No Reads
droRho1
GA---T----------------------TG----TTCCTATGGCTGCTCCATTCA-AACTTATATACCACCTACAACAGAA-------------------------------------------------------------------AGAAGAAT------------------------------------ATT-G-------------------------------T----AAAGCTACATTT--------------A-----AAT------------AGCTTTAA-------------------AACTGGGGGA--------CTC----------------AGAA--------ACAGATAAACGGA----------CGGACGGTCTTGGCTAGATCGACTCGCCTGGTGACGCTGATCAAGAATATAT----ATGCTATATAGCGCCGGAAATGTGCCCTTCAATGTGTTGCTTACTTT-------TGACTAACATTATAATACCG------CCTSizeHit CountTotal NormTotal
No Reads
droBia1
CT---T-----------------------GACTGTTCG--C---------------------------ACCTGCAATGGAG-------------------------------------------------------------------GGAAGACT------------------------------------TTTGG-------------------------------G----AAAGTTTCAGCC--------------T-----GAT------------AGCATTAA-------------------AGCTGAGAGGCGAGTTTGCGT----------------GGA--------A--------ACGGA----------CAGACGGA-----CTAGATTAACTCGTCTAGTGATATTGATCAGGAATATAT----ATACTTTATGGGGTCGGATACGTCTCCTTCTCTGCGTTGCAAACTTC-------TGACTGAAATTATTATACCC------TCTSizeHit CountTotal NormTotal
No Reads
droTak1
CG---T----------------------TA---------------------------------------------------ATAAATATTTTAAACAGCCCACGG-G----------------------------------------------------------TACTAATT-AAAATAAAATATT-----ATTATTTG-----------------------------------TG-----------------------CTAAA----------------------------------------------TAAAAACTAGTTTGCGT----------------AGA----AACGG--------ACGGA----------CAGACGGACATGGCTAGATCGACTCGTCTAGTGATGCTGATCAAGAATATAT----ATACTTTATGGGGTCGGAAACGTCTCCTTGACTGCGTTGCAAACTTC-------TGACTGAAATCATAATACCC------TCTSizeHit CountTotal NormTotal
No Reads
droEug1
TA---A-----------------------A------A--------------------------------------------------------------------------------------------------------------------------------------AT-A------------TA----------------------------------------------------------------------------------------------AC------TAAAAACA--------------GAAACA-------------------AACTGTTGA----AACAG--------ACGGA----------CAGACGGACATAGCTATATCGACTCC-CTATTGATCCTGATCAAGAATATAT----ATACAATATAGGGTCGGAAACGTCTCCTTCACTGCGTTACAAACTTC-------TGACCAAAATTATAATACCC------TCTSizeHit CountTotal NormTotal
No Reads
dm3
AA---G-----------------------A----GCACTATACA------------TACATATGTA-----------------------------------------------------------------------------------------CTTCG---------------------ATTGCT-----TGAGCTAT-----------------------------------AT-----------------------TGTAG---CAAATA---------TTTAAACCCTGGCAAAAAATGTG----------------------------------------------------------------------------------AATTAGATATTGACTTGGCTGGCGATATTGATCAGGAATAGAT----ATACTTGATATGGTCGCAAATATCTCCACCACTGCGTTAAAACCTTC-------TAACTGAAATTAATATACAT------TCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................A------------TACATATGTA-----------------------------------------------------------------------------------------CTTCG---------------------ATTG.............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................GTA-----------------------------------------------------------------------------------------CTTCG---------------------ATTGCT-----TGAGCTA...............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAT----ATACTTGATATGGTC....................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAT----ATACTTGATATGGT.....................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TA---GAT-----------------------------------------------------------------------------------------AT-----------------------------------AAAT--------------------GG----------------GCA-------------------------AAACAACT-----------------------------------------------------------------------------------------------------------GATTTAATC----------------CAAA--AAAAGC--------AAGGA----------CTGACAGACATGGTCAGATCGACTCAGCTATTGATCCTGATCAAGAATATAT----ATACTTTATATGGTCAGAAACGCTTCCTTCTGCTTATTACTCAGTTT-------TCAACGAATCTAGTATA------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT----ATACTTTATATGGTCAGAAACGCT...........................................................2684.75380000001911323000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT----ATACTTTATATGGTCAGAAACGC............................................................2584.75380000001502210000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATTACTCAGTTT-------TCAACGAA.....................2524.50900000032040000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTTATTACTCAGTTT-------TCAACGA......................2722.50500000001400000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATTACTCAGTTT-------TCAACGAAT....................2621.50300000001020000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATCCTGATCAAGAATATAT----ATACT..............................................................................28201.0521000000000210000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCAGTTT-------TCAACGAATCTAGTA..............2521.00200000000020000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTTATTACTCAGTTT-------TCAACGAA.....................2821.00200000001100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT----ATACTTTATATGGTCAGAAACGCTT..........................................................2780.88700100020400000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGGTCAGAAACGCTTCCTT......................................................2480.88700000700000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATCCTGATCAAGAATATAT----A..................................................................................24200.8016000000160000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----ATACTTTATATGGTCAGAAA...............................................................2680.75600000013020000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTTATTACTCAGTTT-------TCAACGAATC...................3020.50100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCGACTCAGCTATTGATCCTGATCAAGA.............................................................................................2820.50100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................AGC--------AAGGA----------CTGACAGA...................................................................................................................................1620.50100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................AAAGC--------AAGGA----------CTGACAGACATGGTCAGA.........................................................................................................................2820.50100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCTGCTTATTACTCAGTTT-------TCAA.........................2720.50100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCTGCTTATTACTCAGTTT-------TCAACGA......................3020.50100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTTCCTTCTGCTTATTACTCAGTT.....................................2820.50100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCGACTCAGCTATTGATCCTGATCA................................................................................................2540.50200000001000010000
.........................................................................................................................................T--------------------GG----------------GCA-------------------------AAACAACT-----------------------------------------------------------------------------------------------------------GATTTAATC----------------CAAA--AA......................................................................................................................................................................2920.50100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTCTGCTTATTACTCAGTTT-------T............................2520.50100000000010000000
......AT-----------------------------------------------------------------------------------------AT-----------------------------------AAAT--------------------GG----------------GCA-------------------------AAACAACT-----------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................2120.50101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCGACTCAGCTATTGATCCTGATC.................................................................................................2440.50200000002000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GATCGACTCAGCTATTGATCCTGATC.................................................................................................2640.50200000200000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTCTGCTTATTACTCA........................................2020.50100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................ACAGACATGGTCAGATCGACG...................................................................................................................2120.50101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCTGCTTATTACTCAGTTT-------TCAACGAA.....................3120.50100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTTCCTTCTGCTTATTACTCAGTT.....................................2720.50100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACTCAGTTT-------TCAACGAATCT..................2420.50100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................AAGGA----------CTGACAGACATGGTC............................................................................................................................2020.50100000010000000000
..................................................................................................................................................................................................................................................................................................................................TTAATC----------------CAAA--AAAAGC--------AAGGA----------CTGACAGA...................................................................................................................................2920.50100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATAT----ATACTTTATATGGTCAGAAA...............................................................2850.40200000001001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATAT----ATACTTTATATGGTCAGA.................................................................2650.40200000000020000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCTATTGATCCTGATCAAGA.............................................................................................2330.33100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTATATGGTCAGAAACGCTT..........................................................2490.33300000001200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTATATGGTCAGAAACGCT...........................................................2390.33300000020100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT----ATACTTTATATGGTCAGAAACG.............................................................2480.25200000000200000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTCAGCTATTGATCCTGAT..................................................................................................2460.17100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCGACTCAGCTATTGATCCTGAT..................................................................................................2360.17100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GATCGACTCAGCTATTGATCCTGAT..................................................................................................2560.17100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATCCTGATCAAGAATATAT----...................................................................................23200.15300000000300000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATCCTGATCAAGAATATAT----ATACTT.............................................................................29200.15300000000300000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTATATGGTCAGAAACGCTTCCT.......................................................2770.14100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----ATACTTTATATGGTCAGAAAC..............................................................2770.14100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGGTCAGAAACGCTTCCTTCT....................................................2770.14100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----ATACTTTATATGGTCAGAAACGC............................................................2970.14100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTATATGGTCAGAAACGCTTCC........................................................2670.14100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGGTCAGAAACGCTTCCTTC.....................................................2580.13100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----ATACTTTATATGGTCAGAAACGC............................................................2680.13100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----ATACTTTATATGGTCAGAA................................................................2580.13100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----ATACTTTATATGGTCAGA.................................................................2480.13100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----ATACTTTATATGGTCAGAAACGC............................................................2780.13100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----ATACTTTATATGGTCAG..................................................................2380.13100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTATATGGTCAGAAACGCTTC.........................................................2580.13100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----ATACTTTATATGGTCAG..................................................................2190.11100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTTCCTTCTGCTT................................................1790.11100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTATATGGTCAGAAAC..............................................................2090.11100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----ATACTTTATATGGTCAGAAA...............................................................2390.11100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GATCGACTCAGCTATTGATCCT.....................................................................................................22100.10100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGATCAAGAATATAT----ATACT..............................................................................23200.10200000000200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT----ATACTTTATATGGTCAGAAACGCC...........................................................26100.10100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGGTCAGAAACGCT...........................................................18110.09100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTCAGAAACGC............................................................15130.08100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----ATACTTTATATGGTCAGAAAA..............................................................27150.07100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGATCGACTCAGCTAT............................................................................................................16150.07100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCTGATCAAGAATATAT----ATACTT.............................................................................27200.05100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATCCTGATCAAGAATATAT----ATA................................................................................26200.05100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATAT----ATACTTTATATGGT.....................................................................22200.05100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATCAAGAATATAT----ATACTTTATA.........................................................................27200.05100000010000000000
droSec2
AA---T-----------------------G------------CC----------------------------------------------------TAT---CGA-A--------T--AAG-----------TAATGA--------------------GG-----------AAA------------------------------GAACTATAATCGTTGGGCTTCTACT----CAAAATTCATGACGAA----------------------------------------------------------------------AGTTTG--------------------GG--------A--------GCAAT----------CGGACGGACAGGATCAGATCGACTCGGCTATTGATCCAGATCAAGAATAT------ATACTTTATATGGTCGGAAACGG--CCTTCGGCCTTTTACATACTTT-------TCAACGAATCTAGTATACCC------TTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................TCGACTCGGCTATTGATCCAGATCA................................................................................................2531.3343010
.............................................................................................................................................................................................................................................................................................................................................................................................................TCGACTCGGCTATTGATCCAGATC.................................................................................................2431.0031020
.............................................................................................................................................................................................................................................................................................................................................................................................................TCGACTCGGCTATTGATCCAGATCAAGA.............................................................................................2830.6722000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCGACTCGGCTATTGATCCAGAT..................................................................................................2330.3311000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGATCGACTCGGCTATTGATCCAGA...................................................................................................2530.3310010
...............................................................................................................................................................................................................................................................................................................................................................................................................GACTCGGCTATTGATCCAGATCAAGA.............................................................................................2640.2511000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------TCAACGAATCTAGTATACCC------TT.23200.1533000
droYak3
GA---T-----------------------A---------------------------------------------------ATAAGTCACT-----------------------------G-----------TC-------------------------------TTTTAAGT-AAGATGAAAAATG-----CAAGGATGTGCAAAGC-------------------------A-------------------------------AAC-CTGGT-----------------------------------------ATAA------GCC----------------AGAT--------GCAGACGGACGGA----------CAGACGGACATGGCCAGATCGACTCGGCTATTGATCCTGATCAAGAATATAT----ATACTTTATATGGTCGGAAACAGTTTCTTCTGACTGTTACATACGTT-------TCAACGAATCTAGTATACCC------TTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................GACATGGCCAGATCGACTCGG................................................................................................................21200.35707000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GACGGACATGGCCAGATCGACTCGGCTA.............................................................................................................28200.25500500000000
.............................................................................................................................................................................................................................................................................................................................................................................................GACGGACATGGCCAGATCGAC....................................................................................................................21200.10202000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGATCAAGAATATAT----A..................................................................................20200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CCAGATCGACTCGGCTATTGATCC......................................................................................................24200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAGATCGACTCGGCTATTGATC.......................................................................................................27200.05100100000000
.......................................................................................................................................................................................................................................................................................................................................................................GACGGACGGA----------CAGACGGACATGG..............................................................................................................................23200.05100010000000
..................................................................................................................................................................................................................................................................................................................................................................................................ACATGGCCAGATCGACTCG.................................................................................................................19200.05100000100000
droEre2
AA---T-----------------------G------------CT----------------------------------------------------TGTAAATGC-T--------A--TAT-----------AAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAAAACAATTTAAAATT--GTT----------TCT--AA------------GG----TACGG--------ACGGA----------CCGATGGACATGGTCAGATCGACTCGGCTATTGATCCGGATCAACAATAAAA----ATACTTTATATGGTCGGAAACGCATTCTTCTGCCTGTTCCATACTTT-------TCAACGAATCTAGTATAGCCT-----TTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGCATTCTTCTGCCTGTTGT...........................................2420.5011000000

Generated: 05/17/2015 at 04:59 AM