dvi_3397

exon [dvir_GLEANR_10559:11]; CDS [Dvir\GJ10650-cds]; CDS [Dvir\GJ10650-cds]; exon [dvir_GLEANR_10559:10]; intron [Dvir\GJ10650-in]

##################################################-------------------------------------------------------------------------------------------------------################################################## AAAATGAGGGCTTTATGACGGGTCGCGTGTTCCTGCCTTGGAAGTTTATTGTAAGTTTTAACATGAAGTCGTTTTTGGGTCAAGTGTCACCTAGCTGCTGTTTTACGAAGACTTTATTTACGAGCGAGCTAAACTTCTCTGGCTTTTCTGCAGAATAAAACTGCCGGTTTGTTTGGCACTGGAGCTTTAATCCGCTGGACGAC ************************************************....((((....((((((((((..((((((........))))))..))...........))))))))....))))((((((........))))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M061 embryo	V047 embryo	SRR060667 160_females_carcasses_total	M047 female body	V116 male body	SRR060668 160x9_males_carcasses_total	SRR060665 9_females_carcasses_total	SRR060679 140x9_testes_total	SRR060658 140_ovaries_total	SRR060669 160x9_females_carcasses_total	SRR060666 160_males_carcasses_total
................................................................................................................................................................................AACTGGAGCTTTAATCCGCTGGAC...	24	1	1	2.00	2	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................ATTAATAAAACTGCCGGTTTGTTTGG...........................	26	3	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........GGCTTTATGACGGGTCGCGTGTTCCCTC.......................................................................................................................................................................	28	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................GACGGGTCGCGTGTTCCTGC.......................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................GTGTTCCTGCCTTGGAAGTT.............................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................ACTGGAGCTTTAATCCGCT.......	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.AAATGAGGGCTTTATGACGGGTCGCGT...............................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................AAACTGCCGGTTTGTTTGGC..........................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................ATAAAACTGCCGGTTTGTTTGGCAACT......................	27	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................AAAACTGCCGGTTTGTTT.............................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GCAACTGGAGCTTTAATCCGCTGG.....	24	2	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........................CGTGTTCCTGCCTTGGAAGTTTATT.........................................................................................................................................................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
....................GGTCGCGTGTTCCTGCCTTGGAAGT..............................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
AAAATGAGGGCTTTATGACGGGT....................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.......................CGCGTGTTCCTGCCTTGGAA................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.....................GTCGCGTGTTCCTTCCTTGGAAGT..............................................................................................................................................................	24	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........GCTTTATGACGGGTCGCGTG..............................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................ACTGGAGCTTTAATCCGCTGGA....	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................CGGGTCGCGTGTTCCTGCC......................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.......................CGCGTGTTCCTGCCTTGGA.................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......GGGCTTTATGACGGGTCGCG................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................GTGTCGCGTGTTCCTGCCTTGGA.................................................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GCTTTAATCCGCTGGATGA.	19	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................CGCGTGTTCCTGCCTTGGAAGT..............................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.AAATGAGGGCTTTATGAC........................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.........................................................................TTTGGGCCAAGTTTCACCTAACTGC.........................................................................................................	25	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................CGCGTGTTCCTGCCTTGTC.................................................................................................................................................................	19	2	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GGAGCTACCATCCGCTGGAC...	20	3	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TGTTTGGGACTGCAGCTCTAA.............	21	3	5	0.20	1	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................CTAAACTTCTCTGTCTTCT........................................................	19	2	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................GGTTTGTTTGGGAATGCAGCT.................	21	3	8	0.13	1	0	0	0	0	0	0	0	0	1	0	0
..............................................................................TTCAAGGGTTACCTAGCTG..........................................................................................................	19	3	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................GCTCTAAACTTCTCTGTCTT..........................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................GTTTGGGACTGCAGCTCTA..............	19	3	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
.......GGACTTTGGGACGGGTCG..................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0

TTTTACTCCCGAAATACTGCCCAGCGCACAAGGACGGAACCTTCAAATAACATTCAAAATTGTACTTCAGCAAAAACCCAGTTCACAGTGGATCGACGACAAAATGCTTCTGAAATAAATGCTCGCTCGATTTGAAGAGACCGAAAAGACGTCTTATTTTGACGGCCAAACAAACCGTGACCTCGAAATTAGGCGACCTGCTG ************************************************....((((....((((((((((..((((((........))))))..))...........))))))))....))))((((((........))))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	V116 male body	SRR060686 Argx9_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total	M028 head	SRR060664 9_males_carcasses_total	SRR060669 160x9_females_carcasses_total	SRR060679 140x9_testes_total	SRR060682 9x140_0-2h_embryos_total
.........................GCACAGGGGTGGAACCTTC...............................................................................................................................................................	19	3	11	2.55	28	16	5	0	0	2	2	1	1	1
........................GGCACAGGGGCGGAACCTTC...............................................................................................................................................................	20	3	2	1.00	2	1	1	0	0	0	0	0	0	0
.........................GCACAGGGGGGGAACCTTC...............................................................................................................................................................	19	3	3	0.67	2	0	2	0	0	0	0	0	0	0
....................................................TTCAAAAGTGCACTTCAGC....................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0	0	0	0
.........................GCACAGGGGCGGAACCTTCC..............................................................................................................................................................	20	3	4	0.50	2	2	0	0	0	0	0	0	0	0
.......................................................................AAAAACCCAGTACACAAAGGAT..............................................................................................................	22	3	4	0.25	1	0	0	0	1	0	0	0	0	0
........................GGCACAGGGATGGAACCTT................................................................................................................................................................	19	3	5	0.20	1	1	0	0	0	0	0	0	0	0
........................CGCACAGGGGTGGAACCTTC...............................................................................................................................................................	20	3	5	0.20	1	0	1	0	0	0	0	0	0	0
........................GGCACAGGGGCGGAACCTT................................................................................................................................................................	19	3	8	0.13	1	0	1	0	0	0	0	0	0	0
........................GGCACAAGGGTGGAACCTT................................................................................................................................................................	19	3	20	0.10	2	1	1	0	0	0	0	0	0	0
........................................................................................................................................................CTAATTTTGACGACCCAAC................................	19	3	20	0.05	1	0	0	0	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12855:1274937-1275139 +	dvi_3397	AAAATGAGGGCTTTATGACGGGTCGCGTGTTCCTGCCTTGGAAGTTTATTGTAAGTTTT------------A---------------------------------ACATGAAGTCGTTTTTGGGTCAAGTGTCACCTAGCTG-------------CTGTTT----TACGAAGACTTTATTTACGAGCGAGCTAAA--------CT------------------TCTCTGGCTTTTCTGCAGAATAAAACTGCCGGTTTGTTTGGCA-CTGGAGCTTTAATCCGCTGGACGAC
droMoj3	scaffold_6540:27021242-27021405 +	dmo_2080	AGAACGAAGGCTTCATGACGGGACGCGTCTTTCTGCCCTGGAAATTTATTGTAGGTCGCTCTCGCAGCAGAGGGGG-AACAT-----------CC----CTATTAATAT-------------------------------------------------------------------------------------------------------GTGAC-TGTT--------TGTTGTTGTAGAATAAAACGGTTGGCTTGTTCGGCAACTGGAGCTTCAATCCCATGGACGAC
droGri2	scaffold_2703:501-571 -		C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------CTCTTTGCTCTCATCTAGAATAAAACGGCTGGATTGTTTGGCAATTGGAGTTTCAATCCGATGGATGAC
droWil2	scf2_1100000004921:673550-673713 -		AAAATGAAGGCTTCATGACAGGTCGCGTATTCCTGCCATGGAAGTTTATTGTAAGTCAA------------AA-AGA-AGC---TAACAAGTGAT-----------------------------------------------------------------------------------------------ATAGT--------TTTTGTTGAGTGGTTTTAT--------TTTTTTTGCAGAATAAAACCGCTGGACTCTTTGGTAATTGGAGTTTCAATCCGCTGGACGAT
dp5	2:124921-125082 +		AGAACGAGGGCTTTATGACGGGTCGCGTTTTCCTCCCATGGAAGTTCATAGTAAGTTTA------------AA-GGG-AACAAAACTCCGGC-------------------------------------------------------------------------CTT----------------------GCACA--------TTCCTCTA-----ATGGAT--------CTTCCTTGCAGAACAAAACTGCTGGATTGTTCGGCAATTGGAGCTTCAATCCCTTGGACGAC
droPer2	scaffold_7:2916587-2916748 +		AGAACGAGGGCTTTATGACGGGTCGCGTTTTCCTCCCATGGAAGTTCATAGTAAGTTTA------------AA-GGG-AACAAAACCCCGGC-------------------------------------------------------------------------CTT----------------------GCACA--------TTCCTCTA-----ATGGAT--------CTTCCTTGCAGAACAAAACTGCTGGATTGTTCGGCAATTGGAGCTTCAATCCCTTGGACGAC
droAna3	scaffold_13340:14392139-14392295 -		AGAACGAAGGATTCATGACAGGACGCGTCTTCCTGCCCTGGAATTTCATTGTAAGCTT----------------GGG-TTTGTAACTCGTGT-------------------------------------------------------------------------CTT----------------------GAACA--------CATTATTT-------ATAT--------ATTCTTTTTAGAACAAAACGGCAGGACTCTTTGGCAACTGGAGCTTCAACAAACTGGATGAC
droBip1	scf7180000395971:773096-773253 +		AGAACGAAGGATTTATGACAGGACGCGTTTTCCTACCCTGGAATTTCATAGTAAGTTTT------------GG-GGT-T---TGGCTCGTGACTTTTATCCGCTAACAT-------------------------------------------------------------------------------------------------------------GTAT--------ATACTTTTTAGAACAAAACGGCAGGACTCTTTGGCAACTGGAGCTTCAACAAGCTGGATGAC
droKik1	scf7180000301923:118728-118898 -		AGAATGAGGGTTTCATGACCGGTCGCGTTTTCCTGCCCTGGAAGTTTATAGTGAGTGTTTT-------------GG---------------C--------------------------------TC----------------CTT------TAATTTA---------T----------------------GTAAA--------TTTTCTTAAACGTTATTTTATTTATAAATTCAATCTAGAATAAAACGGCTGGTCTCTTTGGAAACTGGAGCTTTAACAAGCTGGATGAC
droFic1	scf7180000453782:299626-299787 +		AGAACGAGGGCTTCATGACGGGCCGCGTCTTCCTGCCCTGGAAGTTTATAGTGAGTGGATT-------------TG-TTGCC-----------AC----------------------------------------CTACTTCTTCGATTAT----AT---------------------------------ACAAC--------TT------------TCGAC--------TCCCACTTCAGAACAAAACAGCCGGACTCTTTGGCAACTGGAGCTTCAACAAGCTGGACGAC
droEle1	scf7180000491194:1006940-1006995 -		AGAACGAGGGCTATATGACGGGACGCGTCTTTCTGCCCTGGAAGTTTATAGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000777206:325861-326023 +		AGAACGAGGGCTTCATGACGGGCCGCGTGTTTCTGCCCTGGAAGTTTATAGTGAGTGCA------------AA-TGG-AAA---TGTA-----AA------------------------------------------------------------ATATTT------------------------------CAGA--------TTTCAAAA-ACG--------TTCTTTTTTTAATTACAGAATAAAACAGCAGGACTTTTTGGCAACTGGAGTTTTAATAAGCTGGACGAC
droBia1	scf7180000302113:307421-307584 +		AGAACGAGGGCTTCATGACGGGCCGCGTCTTCCTGCCCTGGAAGTTTATAGTGAGTGCC------------AA-ATA-A---TATTTCTCATTTT-----------------------------------------------------------------------------------------------TTATA--------CTTTATTTTATAAATTTAC--------TATAATTCCAGAACAAAACAGCTGGTCTCTTTGGCAACTGGAGCTTTAATAAATTGGACGAC
droTak1	scf7180000415286:119852-120014 -		AGAACGAGGGCTACATGACGGGTCGCGTTTTCCTGCCCTGGAAGTTTATAGTGAGTGCA----------------GA-A---TATTTCTAAATTT-----------------------------------------------------------------------------------------------TTACC--------TTTTATTTTATATATTTAT------TTTCCTATACCAGAACAAAACAGCTGGCCTCTTTGGCAACTGGAGCTTCAACAAGTTAGACGAC
droEug1	scf7180000409166:26087-26245 +		AGAACGAGGGTTTCATGACGGGTCGCGTTTTCCTGCCCTGGAAGTTTATAGTGAGTGAA------------AC-AGG-A---TATTTTGGGT-------------------------------------------------------------------------TTT----------------------TTAGA--------TTTTATTA-----TTTTGC--------TTTAATCATAGAACAAAACGGCTGGACTCTTTGGCAACTGGAGCTTTAATAAGTTGGACGAC
dm3	chr3R:27007390-27007556 -		AGAACGAAGGATACATGACCGGTCGCGTCTTCCTGCCATGGAAGTTTATAGTAAGTAGCTA-------------GG-AAATT-----------AT------------------------------------------------------------GTATCTTAGTTTA----------------------TTACATTTTCACATT------------------TTTATTATTTAACTACAGAACAAAACCGCGGGACTCTTTGGCAACTGGAGTTTTAATAAACTAGACGAC
droSim2	3r:26310868-26311036 -		AGAACGAGGGATACATGACCGGTCGCGTTTTCCTGCCCTGGAAGTTTATAGTAAGTAGCTT-------------TG-AAATT-----------AT-----------------GCT----------------------------------------ATATTT-GAAATA----------------------TTACATTTTCACATT------------------TTCATTATTTAACTACAGAACAAAACCGCGGGACTGTTTGGCAACTGGAGCTTTAATAAACTAGACGAC
droSec2	scaffold_4:5825535-5825692 -		AGAACGAGGGATACATGACCGGTCGCGTTTTCCTGCCCTGGAAGTTTATAGTAAGTAGCTA-------------GG-AAATT-----------AT------------------------------------------------------------ATACTT-GGATTA----------------------CTACA--------TT------------------TTCATTATTTAACTACAGAACAAAACCGCGGGACTTTTTGGCAACTGGAGCTTTAATAAACTAGACGAC
droYak3	3R:27943172-27943330 -		AGAACGAGGGTTACATGACCGGTCGCGTCTTCCTGCCCTGGAAGTTTATAGTAAGTACCTA-------------GG-AATTT-----------TC------------------------------------------------------------ATGTTTTAATTTA----------------------CTTAA--------TT------------------TTCATTATTTATCTGTAGAACAAAACCGCCGGACTGTTTGGCAACTGGAGCTTTAATAAACTGGACGAC
droEre2	scaffold_4820:977479-977637 +		AGAACGAGGGATACATGACCGGTCGCGTCTTCCTACCCTGGAAGTTTATAGTAGGTAGCCA-------------GG-AATTT-----------AC------------------------------------------------------------ATACTCAAGTTTA----------------------CTACA--------TT------------------TTCATTATCTAACTTCAGAACAAAACCGCTGGACTGTTTGGCAACTGGAGCTTTAACAAGCTAGACGAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AAAATGAGGGCTTTATGACGGGTCGCGTGTTCCTGCCTTGGAAGTTTATTGTAAGTTTT------------A---------------------------------ACATGAAGTCGTTTTTGGGTCAAGTGTCACCTAGCTG-------------CTGTTT----TACGAAGACTTTATTTACGAGCGAGCTAAA--------CT------------------TCTCTGGCTTTTCTGCAGAATAAAACTGCCGGTTTGTTTGGCA-CTGGAGCTTTAATCCGCTGGACGAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................GACGGGTCGCGTGTTCCTGC................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GTGTTCCTGCCTTGGAAGTT......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................A-CTGGAGCTTTAATCCGCT.......	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AAATGAGGGCTTTATGACGGGTCGCGT........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAACTGCCGGTTTGTTTGGC...........................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................ATAAAACTGCCGGTTTGTTTGGCA-ACT......................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AAAACTGCCGGTTTGTTT..............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CGTGTTCCTGCCTTGGAAGTTTATT..................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GGTCGCGTGTTCCTGCCTTGGAAGT.......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
AAAATGAGGGCTTTATGACGGGT.............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................CGCGTGTTCCTGCCTTGGAA.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCTTTATGACGGGTCGCGTG.......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................A-CTGGAGCTTTAATCCGCTGGA....	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CGGGTCGCGTGTTCCTGCC...............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................CGCGTGTTCCTGCCTTGGA..........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GGGCTTTATGACGGGTCGCG.........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CGCGTGTTCCTGCCTTGGAAGT.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AAATGAGGGCTTTATGAC.................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CGCGTGTTCCTGCCTTGTC..........................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

AGAACGAAGGCTTCATGACGGGACGCGTCTTTCTGCCCTGGAAATTTATTGTAGGTCGCTCTCGCAGCAGAGGGGG-AACAT-----------CC----CTATTAATAT-------------------------------------------------------------------------------------------------------GTGAC-TGTT--------TGTTGTTGTAGAATAAAACGGTTGGCTTGTTCGGCAACTGGAGCTTCAATCCCATGGACGAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................................................................................................................................................................TTGTTCGGCAACTGGAGCTTCAAT............	24	1	1.00	1	1	0	0	0	0	0
.GAACGAAGGCTTCATGACGGGACGC..........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...ACGAAGGCTTCATGACGGGACGC..........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................ATAAAACGGTTGGCTTGT................................	18	1	1.00	1	1	0	0	0	0	0
.GAACGAAGGCTTCATGACGGGACGCGT........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................GGCTTGTTCGGCAACTGGAGC..................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................GGCTTGTTCGGCAACTGGA....................	19	1	1.00	1	1	0	0	0	0	0
..................................................GTAGGTCGCTCTCGCAGCAGAGGGG.........................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................AAAACGGTTGGCTTGTTCGGCA..........................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAACGGTTGGCTTGTTCGGCA..........................	21	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................TGGAGCTTCAATCCCATGGA....	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CGGCAACTGGAGCTTCAATCCCATGGA....	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................GGCTTGTTCGGCAACTGGAG...................	20	1	1.00	1	1	0	0	0	0	0
.....GAAGGCTTCATGACGGGACGCGTC.......................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................CGTCTTTCTGCCCTGGAA.........................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0

droGri2

C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------CTCTTTGCTCTCATCTAGAATAAAACGGCTGGATTGTTTGGCAATTGGAGTTTCAATCCGATGGATGAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AAAATGAAGGCTTCATGACAGGTCGCGTATTCCTGCCATGGAAGTTTATTGTAAGTCAA------------AA-AGA-AGC---TAACAAGTGAT-----------------------------------------------------------------------------------------------ATAGT--------TTTTGTTGAGTGGTTTTAT--------TTTTTTTGCAGAATAAAACCGCTGGACTCTTTGGTAATTGGAGTTTCAATCCGCTGGACGAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................AGGTCGCGTATTCCTGCCATGGAA.........................................................................................................................................................................................................................................................	24	1	9.00	9	0	0	1	8	0
....................GGTCGCGTATTCCTGCCATGGAA.........................................................................................................................................................................................................................................................	23	1	3.00	3	0	2	1	0	0
..................CAGGTCGCGTATTCCTGCCATGGAA.........................................................................................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0
..........................................................................................................................................................................................................................................................................ATTGGAGTTTCAATCCGCTGGA....	22	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................TTTGGTAATTGGAGTTTCAATCCGC........	25	1	1.00	1	0	1	0	0	0
....................GGTCGCGTATTCCTGCCATGGAAGT.......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................AACCGCTGGACTCTTTGGT...........................	19	1	1.00	1	0	1	0	0	0
...................AGGTCGCGTATTCCTGCCATGGA..........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................GGAGTTTCAATCCGCTGGAC...	20	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................................................CCGCTGGACTCTTTGGTAATT.......................	21	1	1.00	1	1	0	0	0	0
.........GCTTCATGACAGGTCGCGTATTCCTGCC...............................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.................ACAGGTCGCGTATTCCTGCCATGGAA.........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.AAATGAAGGCTTCATGACA................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................AAAACCGCTGGACTCTTTGGT...........................	21	1	1.00	1	0	1	0	0	0
..............ATGACAGGTCGCGTATTC....................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...................AGGTCGCGTATTCCTGCCATGGAAGT.......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...ATGAAGGCTTCATGACAGGT.............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..................CAGGTCGCGTATTCCTGCCATGGAAGT.......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................GTTTCAATCCGCTGGACGAT	20	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................AATTGGAGTTTCAATCCGCTGGAC...	24	1	1.00	1	0	1	0	0	0
.......................CGCGTATTCCTGCCATGGAAG........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
....................GGTCGCGTATTCCTGCCATGGA..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................GTTTCAATCCGCTGGACGA.	19	1	1.00	1	0	0	0	1	0
.AAATGAAGGCTTCATGAC.................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................GTAATTGGAGTTTCAATCCGCTG......	23	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................GACTCTTTGGTAATTGGA....................	18	1	1.00	1	0	1	0	0	0
..AATGAAGGCTTCATGACAGGT.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................AACCGCTGGACTCTTTGGTAATTGGA....................	26	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................TCTTTGGTAATTGGAGTTTCAATCCGCT.......	28	1	1.00	1	0	1	0	0	0
..........CTTCATGACAGGTCGCGTATTCCTGCC...............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................ATAAAACCGCTGGACTCTTTGGTA..........................	24	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................CGCTGGACTCTTTGGTAATT.......................	20	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................GCTGGACTCTTTGGTAATTG......................	20	1	1.00	1	0	1	0	0	0
.............CATGACAGGTCGCGTATT.....................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0

dp5

AGAACGAGGGCTTTATGACGGGTCGCGTTTTCCTCCCATGGAAGTTCATAGTAAGTTTA------------AA-GGG-AACAAAACTCCGGC-------------------------------------------------------------------------CTT----------------------GCACA--------TTCCTCTA-----ATGGAT--------CTTCCTTGCAGAACAAAACTGCTGGATTGTTCGGCAATTGGAGCTTCAATCCCTTGGACGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................AATTGGAGCTTCAATCCCTTGGAC...	24	1	22.00	22	2	14	5	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................GGCAATTGGAGCTTCAATCCCTTGGAC...	27	1	6.00	6	0	2	3	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................AAAACTGCTGGATTGTTCGGC...........................	21	1	5.00	5	0	3	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................ATTGGAGCTTCAATCCCTTGGAC...	23	1	5.00	5	0	4	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CGGCAATTGGAGCTTCAATCCCTTGGAC...	28	1	4.00	4	0	2	2	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATTGTTCGGCAATTGGAGCT.................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGGAGCTTCAATCCCTTGGAC...	21	1	3.00	3	0	2	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GGAGCTTCAATCCCTTGGAC...	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AACAAAACTGCTGGATTGTTCGG............................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....GAGGGCTTTATGACGGGT.............................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GCTGGATTGTTCGGCAATTGGAGCTT................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAACTGCTGGATTGTTCGGC...........................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTCGGCAATTGGAGCTTC...............	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AATTGGAGCTTCAATCCCTTG......	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TTGGAGCTTCAATCCCTTGGAC...	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................ATTGGAGCTTCAATCCCTTG......	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AATTGGAGCTTCAATCCCTTGGA....	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................AAAACTGCTGGATTGTTCGG............................	20	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.GAACGAGGGCTTTATGACGGG..............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..AACGAGGGCTTTATGACGGGTCGCGT........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CTA-----ATGGAT--------CTTCCTTGCAGAACAAA.............................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAACTGCTGGATTGTTCGGCAATTGG.....................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................CTGCTGGATTGTTCGGCAATTGGAGC..................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AATTGGAGCTTCAATCCCTTGGACGAC	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................GGGTCGCGTTTTCCTCCCATG............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GGTCGCGTTTTCCTCCCATGGA..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTCGGCAATTGGAGCTTCAATCCCTTG......	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................CGCGTTTTCCTCCCATGGAA.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....CGAGGGCTTTATGACGGGTCGC..........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AACTGCTGGATTGTTCGGCAATTGGAGC..................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TTCGGCAATTGGAGCTTCAATCCCTTGG.....	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGCAATTGGAGCTTCAATCCCTTGGACG..	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTCGGCAATTGGAGCTTCAATCC..........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GAACGAGGGCTTTATGACGG...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATTGTTCGGCAATTGGAGCTTC...............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................ACAAAACTGCTGGATTGTTCGGC...........................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATTGTTCGGCAATTGGAGCTT................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATTGTTCGGCAATTGGAGCTTCA..............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTCGGCAATTGGAGCTTCA..............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GGTCGCGTTTTCCTCCCATGGAAGTT......................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AACAAAACTGCTGGATTGT................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TGTTCGGCAATTGGAGCTTCAATCCCT........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AACTGCTGGATTGTTCGGCA..........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....GAGGGCTTTATGACGGGTC............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATTGTTCGGCAATTGGA....................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GAACGAGGGCTTTATGAC.................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................CGCGTTTTCCTCCCATGG...........................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGCAATTGGAGCTTCAATCC..........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....GAGGGCTTTATGACGGGTCGC..........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AACTGCTGGATTGTTCGGC...........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATTGTTCGGCAATTGGAGC..................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...ACGAGGGCTTTATGACGGGT.............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GCTTTATGACGGGTCGCGT........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGCAATTGGAGCTTCAATCCCTTG......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GAGCTTCAATCCCTTGGAC...	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CAATTGGAGCTTCAATCCCTTGGAC...	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CTGGATTGTTCGGCAATTG......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGGAGCTTCAATCCCTTG......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AGCTTCAATCCCTTGGAC...	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CGGCAATTGGAGCTTCAATCCCTT.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....GAGGGCTTTATGACGGGTCGCGT........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................GGATTGTTCGGCAATTGGAGCTTC...............	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..AACGAGGGCTTTATGACG................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......AGGGCTTTATGACGGGTCGC..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AATTGGAGCTTCAATCCCTT.......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGAACGAGGGCTTTATGACGGGTCGCGTTTTCCTCCCATGGAAGTTCATAGTAAGTTTA------------AA-GGG-AACAAAACCCCGGC-------------------------------------------------------------------------CTT----------------------GCACA--------TTCCTCTA-----ATGGAT--------CTTCCTTGCAGAACAAAACTGCTGGATTGTTCGGCAATTGGAGCTTCAATCCCTTGGACGAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................................AATTGGAGCTTCAATCCCTTGGAC...	24	1	19.00	19	16	3	0	0	0	0
.....................................................................................................................................................................................................................................................................CGGCAATTGGAGCTTCAATCCCTTGGAC...	28	1	14.00	14	14	0	0	0	0	0
..........................................................................................................................................................................................................................................................................ATTGGAGCTTCAATCCCTTGGAC...	23	1	13.00	13	11	2	0	0	0	0
.....................................................................................................................................................................................................................................................AAACTGCTGGATTGTTCGGC...........................	20	1	8.00	8	4	4	0	0	0	0
...............................................................................................................................................................................................................................................................................AGCTTCAATCCCTTGGAC...	18	1	8.00	8	8	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGCAATTGGAGCTTCAATCCCTTGGAC...	27	1	7.00	7	7	0	0	0	0	0
.......................................................................................................................................................................................................................................................ACTGCTGGATTGTTCGGC...........................	18	1	7.00	7	7	0	0	0	0	0
....CGAGGGCTTTATGACGGGTC............................................................................................................................................................................................................................................................................	20	1	5.00	5	5	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GAGCTTCAATCCCTTGGAC...	19	1	5.00	5	4	1	0	0	0	0
......................................................................................................................................................................................................................................................AACTGCTGGATTGTTCGGC...........................	19	1	5.00	5	3	1	1	0	0	0
....................................................................................................................................................................................................................................................AAAACTGCTGGATTGTTCGGC...........................	21	1	4.00	4	3	0	1	0	0	0
.GAACGAGGGCTTTATGACGGGT.............................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	3
...........................................................................................................................................................................................................................................................................TTGGAGCTTCAATCCCTTGGAC...	22	1	3.00	3	3	0	0	0	0	0
.....GAGGGCTTTATGACGGGTCGC..........................................................................................................................................................................................................................................................................	21	1	3.00	3	0	1	0	0	0	2
.....GAGGGCTTTATGACGGGT.............................................................................................................................................................................................................................................................................	18	1	2.00	2	0	1	0	0	0	1
..................................................................................................................................................................................................................................................................GTTCGGCAATTGGAGCTTCAAT............	22	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................CAAAACTGCTGGATTGTTCGGC...........................	22	1	2.00	2	2	0	0	0	0	0
.....................GTCGCGTTTTCCTCCCATGGA..........................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................GCAATTGGAGCTTCAATCCCTT.......	22	1	2.00	2	0	2	0	0	0	0
.....GAGGGCTTTATGACGGGTCGCGT........................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
...ACGAGGGCTTTATGACGGGTCGC..........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.GAACGAGGGCTTTATGACG................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................AACTGCTGGATTGTTCGGCA..........................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................AAAACTGCTGGATTGTTCGG............................	20	1	1.00	1	0	1	0	0	0	0
.GAACGAGGGCTTTATGACGGGTCGC..........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................AAAACTGCTGGATTGTTCGGCA..........................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGGAGCTTCAATCCCTTGGAC...	21	1	1.00	1	0	1	0	0	0	0
..AACGAGGGCTTTATGACGGGT.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................AATTGGAGCTTCAATCCCTTG......	21	1	1.00	1	0	1	0	0	0	0
...ACGAGGGCTTTATGACGGGTCGCGT........................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................GCGTTTTCCTCCCATGGAAGTTC.....................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................GCAATTGGAGCTTCAATCCCTTG......	23	1	1.00	1	0	1	0	0	0	0
..............................TCCTCCCATGGAAGTTCATA..................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..AACGAGGGCTTTATGACGG...............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................CAATTGGAGCTTCAATCCCTTGGAC...	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTCGGCAATTGGAGCTT................	18	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................AACAAAACTGCTGGATTGTTCGGC...........................	24	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................GTTCGGCAATTGGAGCTTCAATCCCTT.......	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTCGGCAATTGGAGCTTCA..............	20	1	1.00	1	0	1	0	0	0	0
...ACGAGGGCTTTATGACGGGTCGCGG........................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTCGGCAATTGGAGCTTCAATCCCT........	26	1	1.00	1	0	1	0	0	0	0
.....GAGGGCTTTATGACGGGTCGCG.........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................TTGTTCGGCAATTGGAGCTTCAAT............	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATTGTTCGGCAATTGGAGCTTCAAT............	25	1	1.00	1	1	0	0	0	0	0
.....................GTCGCGTTTTCCTCCCATG............................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0

droAna3

AGAACGAAGGATTCATGACAGGACGCGTCTTCCTGCCCTGGAATTTCATTGTAAGCTT----------------GGG-TTTGTAACTCGTGT-------------------------------------------------------------------------CTT----------------------GAACA--------CATTATTT-------ATAT--------ATTCTTTTTAGAACAAAACGGCAGGACTCTTTGGCAACTGGAGCTTCAACAAACTGGATGAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..AACGAAGGATTCATGACAGGACGC..........................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................CTTTGGCAACTGGAGCTTCAAC............	22	1	2.00	2	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................CAGGACTCTTTGGCAACTGGAGC..................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................CTCTTTGGCAACTGGAGC..................	18	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................CTGGAGCTTCAACAAACTGGAT...	22	1	1.00	1	0	1	0	0	0	0
........GGATTCATGACAGGACGCGTC.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................AACTGGAGCTTCAACAAACTGGATG..	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AACTGGAGCTTCAACAAACTG......	21	1	1.00	1	0	0	1	0	0	0
....................GGACGCGTCTTCCTGCCCTGGA..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........GATTCATGACAGGACGCGT........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................AACGGCAGGACTCTTTGGCAACTGGAG...................	27	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................CTGGAGCTTCAACAAACTGG.....	20	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................CTCTTTGGCAACTGGAGCT.................	19	1	1.00	1	0	1	0	0	0	0
.GAACGAAGGATTCATGACAGGA.............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................CTTTGGCAACTGGAGCTTCAACAAACTG......	28	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................AAAACGGCAGGACTCTTTGGCAACTGG.....................	27	1	1.00	1	0	1	0	0	0	0
.............CATGACAGGACGCGTCTTCCTGCCC..............................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................AAACGGCAGGACTCTTTGGCAACTGGA....................	27	1	1.00	1	1	0	0	0	0	0
.............CATGACAGGACGCGTCTTCCTGCCCT.............................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.GAACGAAGGATTCATGACAG...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................GGAGCTTCAACAAACTGGATGA.	22	1	1.00	1	0	1	0	0	0	0
.............CATGACAGGACGCGTCTTCCTGCCCTG............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................AGGACTCTTTGGCAACTG......................	18	1	1.00	1	0	1	0	0	0	0
.......AGGATTCATGACAGGACGCGTCTTCC...................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................GGCAACTGGAGCTTCAACAAACTGG.....	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................CTTTGGCAACTGGAGCTTCAACAAA.........	25	1	1.00	1	0	0	0	0	1	0
..................CAGGACGCGTCTTCCTGCCCT.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................GGCAGGACTCTTTGGCAACTGGAGCTTC...............	28	1	1.00	1	0	1	0	0	0	0
.....................GACGCGTCTTCCTGCCCTGGAAT........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..........ATTCATGACAGGACGCGTCTTCCT..................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................AACGGCAGGACTCTTTGGCAACTGGA....................	26	1	1.00	1	1	0	0	0	0	0
.............CATGACAGGACGCGTCTTC....................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................GACTCTTTGGCAACTGGAGCTT................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................AACAAAACGGCAGGACTCTTTGGCAAC........................	27	1	1.00	1	0	1	0	0	0	0
.....GAAGGATTCATGACAGGACGC..........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................GGCAGGACTCTTTGGCAACTGGAGC..................	25	1	1.00	1	0	1	0	0	0	0
.GAACGAAGGATTCATGACA................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................GACTCTTTGGCAACTGGAGCTTCAAC............	26	1	1.00	1	1	0	0	0	0	0
.....................GACGCGTCTTCCTGCCCTG............................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droBip1

AGAACGAAGGATTTATGACAGGACGCGTTTTCCTACCCTGGAATTTCATAGTAAGTTTT------------GG-GGT-T---TGGCTCGTGACTTTTATCCGCTAACAT-------------------------------------------------------------------------------------------------------------GTAT--------ATACTTTTTAGAACAAAACGGCAGGACTCTTTGGCAACTGGAGCTTCAACAAGCTGGATGAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGAATGAGGGTTTCATGACCGGTCGCGTTTTCCTGCCCTGGAAGTTTATAGTGAGTGTTTT-------------GG---------------C--------------------------------TC----------------CTT------TAATTTA---------T----------------------GTAAA--------TTTTCTTAAACGTTATTTTATTTATAAATTCAATCTAGAATAAAACGGCTGGTCTCTTTGGAAACTGGAGCTTTAACAAGCTGGATGAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGAACGAGGGCTTCATGACGGGCCGCGTCTTCCTGCCCTGGAAGTTTATAGTGAGTGGATT-------------TG-TTGCC-----------AC----------------------------------------CTACTTCTTCGATTAT----AT---------------------------------ACAAC--------TT------------TCGAC--------TCCCACTTCAGAACAAAACAGCCGGACTCTTTGGCAACTGGAGCTTCAACAAGCTGGACGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGAACGAGGGCTATATGACGGGACGCGTCTTTCTGCCCTGGAAGTTTATAGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGAACGAGGGCTTCATGACGGGCCGCGTGTTTCTGCCCTGGAAGTTTATAGTGAGTGCA------------AA-TGG-AAA---TGTA-----AA------------------------------------------------------------ATATTT------------------------------CAGA--------TTTCAAAA-ACG--------TTCTTTTTTTAATTACAGAATAAAACAGCAGGACTTTTTGGCAACTGGAGTTTTAATAAGCTGGACGAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGAACGAGGGCTTCATGACGGGCCGCGTCTTCCTGCCCTGGAAGTTTATAGTGAGTGCC------------AA-ATA-A---TATTTCTCATTTT-----------------------------------------------------------------------------------------------TTATA--------CTTTATTTTATAAATTTAC--------TATAATTCCAGAACAAAACAGCTGGTCTCTTTGGCAACTGGAGCTTTAATAAATTGGACGAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGAACGAGGGCTACATGACGGGTCGCGTTTTCCTGCCCTGGAAGTTTATAGTGAGTGCA----------------GA-A---TATTTCTAAATTT-----------------------------------------------------------------------------------------------TTACC--------TTTTATTTTATATATTTAT------TTTCCTATACCAGAACAAAACAGCTGGCCTCTTTGGCAACTGGAGCTTCAACAAGTTAGACGAC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGAACGAGGGTTTCATGACGGGTCGCGTTTTCCTGCCCTGGAAGTTTATAGTGAGTGAA------------AC-AGG-A---TATTTTGGGT-------------------------------------------------------------------------TTT----------------------TTAGA--------TTTTATTA-----TTTTGC--------TTTAATCATAGAACAAAACGGCTGGACTCTTTGGCAACTGGAGCTTTAATAAGTTGGACGAC	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGAACGAAGGATACATGACCGGTCGCGTCTTCCTGCCATGGAAGTTTATAGTAAGTAGCTA-------------GG-AAATT-----------AT------------------------------------------------------------GTATCTTAGTTTA----------------------TTACATTTTCACATT------------------TTTATTATTTAACTACAGAACAAAACCGCGGGACTCTTTGGCAACTGGAGTTTTAATAAACTAGACGAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........ATACATGACCGGTCGCGT........................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................CGCGTCTTCCTGCCATGGA..........................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....GAAGGATACATGACCGGTCGCGTCT......................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GATACATGACCGGTCGCGT........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........GATACATGACCGGTCGCGTCTTC....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................ACCGCGGGACTCTTTGGC...........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CTCTTTGGCAACTGGAGTTTTAATA...........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GAAGGATACATGACCGGTCATC.........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGAACGAGGGATACATGACCGGTCGCGTTTTCCTGCCCTGGAAGTTTATAGTAAGTAGCTT-------------TG-AAATT-----------AT-----------------GCT----------------------------------------ATATTT-GAAATA----------------------TTACATTTTCACATT------------------TTCATTATTTAACTACAGAACAAAACCGCGGGACTGTTTGGCAACTGGAGCTTTAATAAACTAGACGAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................GTTTGGCAACTGGAGCTTTAATAAACT.......	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATACATGACCGGTCGCGTTTTCCG..................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................CCGCGGGACTGTTTGGCAACTGG.....................	23	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................GCGGGACTGTTTGGCAACTGGAGCT.................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GCGGGACTGTTTGGCAACTG......................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TACATGACCGGTCGCGTTTTCCTG.................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ACTGTTTGGCAACTGGAGCTTTAAT............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CTGTTTGGCAACTGGAGCTTTAAT............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTTGGCAACTGGAGCTTTAATAAA.........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAACCGCGGGACTGTTTGGCA..........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................AACCGCGGGACTGTTTGGCAA.........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................CCGCGGGACTGTTTGGCAACTGGAG...................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..AACGAGGGATACATGACCGGTCGC..........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AACAAAACCGCGGGACTGTTTGGC...........................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GTCGCGTTTTCCTGCCCTGGA..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................ACCGCGGGACTGTTTGGC...........................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............CATGACCGGTCGCGTTTTCCTGCCCT.............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CGGTCGCGTTTTCCTGCCCTGGA..........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................ACCGCGGGACTGTTTGGCAACTGGAGCTT................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATACATGACCGGTCGCGTTTTCCC..................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GGGACTGTTTGGCAACTGGA....................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGGCAACTGGAGCTTTAAT............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GGGATACATGACCGGTCGCGT........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ACTGTTTGGCAACTGGAGCC.................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GAACGAGGGATACATGACCGGTC............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GGTCGCGTTTTCCTGCCCTGGAA.........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGAACGAGGGATACATGACCGGTCGCGTTTTCCTGCCCTGGAAGTTTATAGTAAGTAGCTA-------------GG-AAATT-----------AT------------------------------------------------------------ATACTT-GGATTA----------------------CTACA--------TT------------------TTCATTATTTAACTACAGAACAAAACCGCGGGACTTTTTGGCAACTGGAGCTTTAATAAACTAGACGAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........ATACATGACCGGTCGCGT........................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	1
........................................................................................................................................................................................................................................................................CAACTGGAGCTTTAATAAAC........	20	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................AACTGGAGCTTTAATAAACT.......	20	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................GGCAACTGGAGCTTTAATAAA.........	21	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................AAACCGCGGGACTTTTTGGC...........................	20	1	1.00	1	1	0	0	0
....................GGTCGCGTTTTCCTGCCCTGGAAGT.......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................TTTTTGGCAACTGGAGCTTTA..............	21	1	1.00	1	0	1	0	0
....CGAGGGATACATGACCGGT.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.GAACGAGGGATACATGACCGGTCGCGTT.......................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................AACTGGAGCTTTAATAAACTA......	21	1	1.00	1	1	0	0	0
.....GAGGGATACATGACCGGTCGCGTTTT.....................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................AACCGCGGGACTTTTTGGCAACTGG.....................	25	1	1.00	1	0	0	1	0
...ACGAGGGATACATGACCGGTCGCGT........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
........GGATACATGACCGGTCGCGT........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................................................................................ACTTTTTGGCAACTGGAGCTTTA..............	23	1	1.00	1	0	0	1	0
.......GGGATACATGACCGGTCGCGTTT......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.GAACGAGGGATACATGACC................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................CTTTTTGGCAACTGGAGCT.................	19	1	1.00	1	1	0	0	0
.........................CGTTTTCCTGCCCTGGAAGT.......................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
............ACATGACCGGTCGCGTTTTC....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...........TACATGACCGGTCGCGTTTTCCT..................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..........................GTTTTCCTGCCCTGGAAGT.......................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.......................CGCGTTTTCCTGCCCTGGA..........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................ACCGCGGGACTTTTTGGCAACTGG.....................	24	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................AACCGCGGGACTTTTTGGCAACT.......................	23	1	1.00	1	0	0	1	0
................GACCGGTCGCGTTTTCCT..................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0

droYak3

AGAACGAGGGTTACATGACCGGTCGCGTCTTCCTGCCCTGGAAGTTTATAGTAAGTACCTA-------------GG-AATTT-----------TC------------------------------------------------------------ATGTTTTAATTTA----------------------CTTAA--------TT------------------TTCATTATTTATCTGTAGAACAAAACCGCCGGACTGTTTGGCAACTGGAGCTTTAATAAACTGGACGAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............TGACCGGTCGCGTCTTCCTGCCCTGGAA.........................................................................................................................................................................................................................................................	28	1	21.00	21	0	0	0	0	0	0	0	0	0	0	21
...........TACATGACCGGTCGCGTCTTCCTGCCCT.............................................................................................................................................................................................................................................................	28	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................CAAAACCGCCGGACTGTTT..............................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GGACTGTTTGGCAACTGGAGC..................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AAAACCGCCGGACTGTTTGG............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........GGTTACATGACCGGTCGCGT........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........TACATGACCGGTCGCGTCTT.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....GAGGGTTACATGACCGGTCGCGTC.......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................GACCGGTCGCGTCTTCCTGCCCTGGA..........................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........GTTACATGACCGGTCGCGTC.......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGCAACTGGAGCTTTAATAAACTGGAC...	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GGAGCTTTAATAAACTGGA....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................CCGGTCGCGTCTTCCTGCCCTGGAA.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TGTAGAACAAAACCGCCGGACTGTTT..............................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........TACATGACCGGTCGCGTCTTC....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................CGCGTCTTCCTGCCCTGGAAGTTT.....................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................GCTTTAATAAACTGGACGA.	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TTTGGCAACTGGAGCTTTAATAAACTG......	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................CCGGTCGCGTCTTCCTGC................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........TACATGACCGGTCGCGTCTTCCTGC................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............ATGACCGGTCGCGTCTTCC...................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AACTGGAGCTTTAATAAACTGGAC...	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......GGGTTACATGACCGGTCGCGTCTT.....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................CGCGTCTTCCTGCCCTGGAA.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GGACTGTTTGGCAACTGGA....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........GGTTACATGACCGGTCGCGTCTT.....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......GGGTTACATGACCGGTCGCGTC.......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........TACATGACCGGTCGCGTCTTCCTGCCCTG............................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................CGGTCGCGTCTTCCTGCCCTGGA..........................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CAACTGGAGCTTTAATAAACTGGAC...	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CAACTGGAGCTTTAATAAACT.......	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................GACCGGTCGCGTCTTCCTGCCCT.............................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TTGGCAACTGGAGCTTTAATAAACTGGAC...	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

AGAACGAGGGATACATGACCGGTCGCGTCTTCCTACCCTGGAAGTTTATAGTAGGTAGCCA-------------GG-AATTT-----------AC------------------------------------------------------------ATACTCAAGTTTA----------------------CTACA--------TT------------------TTCATTATCTAACTTCAGAACAAAACCGCTGGACTGTTTGGCAACTGGAGCTTTAACAAGCTAGACGAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.GAACGAGGGATACATGACCGGT.............................................................................................................................................................................................................................................................................	22	1	3.00	3	1	0	0	0	2	0	0
...........TACATGACCGGTCGCGTCTTCCTACCCT.............................................................................................................................................................................................................................................................	28	1	2.00	2	1	0	0	0	1	0	0
................................................................................................................................................................................................................................................................CTGTTTGGCAACTGGAGCTTTAACAAGC........	28	1	2.00	2	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAACCGCTGGACTGTTTGGC...........................	20	1	2.00	2	0	1	0	1	0	0	0
.............CATGACCGGTCGCGTCTTCCTACCCTG............................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTTGGCAACTGGAGCTTTA..............	20	1	1.00	1	0	0	0	0	0	1	0
....................GGTCGCGTCTTCCTACCCTGGA..........................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.............CATGACCGGTCGCGTCTTCCTACCCT.............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................AACTGGAGCTTTAACAAGA........	19	1	1.00	1	0	0	0	0	0	1	0
.GAACGAGGGATACATGACCGGTCGC..........................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CAAAACCGCTGGACTGTTTGGC...........................	22	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CAACTGGAGCTTTAACAAG.........	19	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AACTGGAGCTTTAACAAGC........	19	1	1.00	1	0	1	0	0	0	0	0
........GGATACATGACCGGTCGCGTCTTC....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................AACTGGAGCTTTAACAAGCTAGAC...	24	1	1.00	1	0	0	0	0	0	1	0
.GAACGAGGGATACATGACCG...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..............ATGACCGGTCGCGTCTTCCTACCCC.............................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAACCGCTGGACTGTTTGGCAACTGGA....................	27	1	1.00	1	1	0	0	0	0	0	0
...................CGGTCGCGTCTTCCTACCCTG............................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAACCGCTGGACTGTTTGG............................	19	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................TGGCAACTGGAGCTTTAACAA..........	21	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................GACTGTTTGGCAACTGGAGC..................	20	1	1.00	1	0	0	0	1	0	0	0
..............ATGACCGGTCGCGTCTTCCTACCCTGGAA.........................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
..........ATACATGACCGGTCGCGT........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................AACCGCTGGACTGTTTGGC...........................	19	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................AACTGGAGCTTTAACAAGCTAGACGAC	27	1	1.00	1	0	1	0	0	0	0	0
................GACCGGTCGCGTCTTCCTACCCTG............................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AAAACCGCTGGACTGTTTGGCAACTGG.....................	27	1	1.00	1	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................TTGGCAACTGGAGCTTTAACAAGC........	24	1	1.00	1	0	1	0	0	0	0	0
.......................CGCGTCTTCCTACCCTGGA..........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
.............CATGACCGGTCGCGTCTTCCTACCCTGGA..........................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
.......................CGCGTCTTCCTACCCTGGAAGG.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
................................CTACCCTGGAAGTTTATAAAC...............................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1	0

dvi_3397

scaffold_12855:1274987-1275089 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads