ID:

dvi_3298

 Coordinate:

scaffold_12855:767176-767469 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.4 -23.4 -23.3

Flybase annnotation

exon [dvir_GLEANR_10520:5]; CDS [Dvir\GJ10608-cds]; exon [dvir_GLEANR_10520:4]; CDS [Dvir\GJ10608-cds]; intron [Dvir\GJ10608-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------########################--------------------------
ACGTTATCGAGCGCACATTCAAGGAGGTTTTTCCAGATAGTCCATGTGAAGTACGAAACATTTTTTACAACATTTAAAAATTAAATTTTCTGATTACGCTGCGTATTTTACTGATGCTTATTGATTTTGATTATGCTTTTAAGTTCACATTTAGCTTTCTTATTATCTAGATTCATTAACATTTTTGCTTTTTCTTGCTTAGCTATCAGATTATTTCACTTTTATCACCTTTATCATTTGAACTAAAACTATAATTGTTAATTCTAACAATCAGGCTGCATCCCAACTAATTCTTGATTAACAAATCGAAAGCTCTTTACGAATTCTCTTTCTTTTATTTCTAGCTGTATGCATATGATGAGCTATGAATTTTTTAATGCTAAATATTGTTCAT
*************************************************************************************...((((((...((((.(((.......((((.(((.(((.((((((.(((.....(((((.......)))))...))).))).))).))).)))))))............))).)))).))))))...........................................(((((((....)))))))..((((..........(((((...)))))..........))))...***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060663
160_0-2h_embryos_total
 M047
female body
 SRR060666
160_males_carcasses_total
 SRR060657
140_testes_total
 SRR060668
160x9_males_carcasses_total
 SRR060658
140_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 V053
head
 SRR060661
160x9_0-2h_embryos_total
 V047
embryo
 SRR060670
9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR060689
160x9_testes_total
 SRR060659
Argentina_testes_total
 SRR060679
140x9_testes_total
 M028
head
 SRR060662
9x160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060655
9x160_testes_total
 SRR060664
9_males_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060683
160_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060674
9x140_ovaries_total
 GSM1528803
follicle cells		 SRR060671
9x160_males_carcasses_total
.......................................................................................................................................................................................................................................................................................................GATTGACAGATCGAGAGCTCTTT............................................................................ 23 3 1 8.00 8 3 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCTTTGGTATCTAGCTGTATG........................................... 21 3 3 7.67 23 2 0 0 1 0 0 0 0 0 3 0 3 1 1 1 1 0 0 3 2 1 0 0 0 1 1 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................ATTGACAGATCGAGAGCTCTTT............................................................................ 22 3 2 3.00 6 2 0 0 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GAGCGCACATTCAAGGAGGTTTTTC......................................................................................................................................................................................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................TTCTTGATTAACAAATCGAAAGCTCTT............................................................................. 27 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................ATATGATGAGCTATGAATTTTTT................... 23 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................ATTAACAGATTGAGAGCTCTTT............................................................................ 22 3 4 1.50 6 5 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GATTAACAGATTGAGAGCTCTTT............................................................................ 23 3 2 1.50 3 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCTTTGGTTTCTAGCTGTAT............................................ 20 2 2 1.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................GCATATGATGAGCTATGAAT........................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GTATGCATATGATGAGCTAT............................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GTATGCATATGATGAGCTA............................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTTTCTGATTACGCTGCGTAT................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GTATGCATATGATGAGCTATG........................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................AGTCCATGTGAAGTACGAA................................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TTTTTCCAGATAGTCCATGTGAACTGT.................................................................................................................................................................................................................................................................................................................................................... 27 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................AACAATCAGGCTGCATCCCAACTA......................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCTTTGGTTTCTAGCTGTATG........................................... 21 2 2 1.00 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GATTAACAGATTGAGAGCTCT.............................................................................. 21 3 2 1.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GATTGACAGATCGATAGCTCTTT............................................................................ 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCTTTTTTATCTAGCTGTATG........................................... 21 2 2 1.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................CTATGAATTTTTTAATGCTAAATATT...... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ACGCGGAGTGTTTTACTGATG...................................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CATTCAAGGAGGCTTTTACAC...................................................................................................................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................ATGATGAGCTATGAATTTTTT................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................ATTGACAGATCGATAGCTCTTT............................................................................ 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................AATGCTAAATATTGTTCAT 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................ATTGACAGATTGAAAGCTCTTT............................................................................ 22 3 10 0.50 5 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCTTTGGTTTCTAGCTGTATGA.......................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GATTAACAGATTGAGAGCTCTT............................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GATTGACAAATTGAGAGCTCTTT............................................................................ 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GATTGACAGATTGAAAGCTCTTT............................................................................ 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCTTTGGTATCTAGCTGTAT............................................ 20 3 13 0.38 5 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................TGACAGATCGAGAGCTCTTT............................................................................ 20 3 11 0.36 4 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCTTTGTTATCTAGCTGTATGC.......................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TTAACAGATTGAGAGCTCTTT............................................................................ 21 3 9 0.33 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................TTGACAGATCGAGAGCTCTTT............................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCTTTGGTTACTAGCTGTATG........................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GATTGACAGATCGAAAGCT................................................................................ 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCTTTTTTATCTAGCTGTATGA.......................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GATTGACAAATTGAGAGCTCT.............................................................................. 21 3 9 0.22 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................CTCTAATTCTTGGTTAACAAA......................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................ATTGACAAATTGAGAGCTCTTT............................................................................ 22 3 10 0.20 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................ACAGATCGAGAGCTCTTT............................................................................ 18 2 11 0.18 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCTTTGCTATCTAGCTGTATG........................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCTTTGGTTACTAGCTGTAT............................................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TTGACAGATTGAAAGCTCTTT............................................................................ 21 3 20 0.15 3 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TAACAGATTGAGAGCTCTTT............................................................................ 20 3 20 0.15 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................ATTAACAGATTGAGAGCTCT.............................................................................. 20 3 17 0.12 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................ATTGACAGATTGAAAGCTCTT............................................................................. 21 3 19 0.11 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................AGGAATTCTCTTTCT............................................................. 15 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................TGATTAACAAAGCGAAAG.................................................................................. 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................GATGTTGTTTATGCTTTGAAG........................................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TAGACCAAGAGAAGTACGA.................................................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................................ATGATTAACAAAACGAAAG.................................................................................. 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGCAATAGCTCGCGTGTAAGTTCCTCCAAAAAGGTCTATCAGGTACACTTCATGCTTTGTAAAAAATGTTGTAAATTTTTAATTTAAAAGACTAATGCGACGCATAAAATGACTACGAATAACTAAAACTAATACGAAAATTCAAGTGTAAATCGAAAGAATAATAGATCTAAGTAATTGTAAAAACGAAAAAGAACGAATCGATAGTCTAATAAAGTGAAAATAGTGGAAATAGTAAACTTGATTTTGATATTAACAATTAAGATTGTTAGTCCGACGTAGGGTTGATTAAGAACTAATTGTTTAGCTTTCGAGAAATGCTTAAGAGAAAGAAAATAAAGATCGACATACGTATACTACTCGATACTTAAAAAATTACGATTTATAACAAGTA
*****************************************************************************...((((((...((((.(((.......((((.(((.(((.((((((.(((.....(((((.......)))))...))).))).))).))).)))))))............))).)))).))))))...........................................(((((((....)))))))..((((..........(((((...)))))..........))))...************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060663
160_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060664
9_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060666
160_males_carcasses_total
 M047
female body
 SRR060655
9x160_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060683
160_testes_total
 M027
male body		 SRR060671
9x160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
..........CGCGAGTTAGTTCCTCCAACAA.......................................................................................................................................................................................................................................................................................................................................................................... 22 3 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................TAGGCTAGATTAAGAACTA................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............CGAGTCAGTTCCTCCAAAA........................................................................................................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GCGTGTGAGTTCCTCCAA............................................................................................................................................................................................................................................................................................................................................................................. 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TCAAGTGTAAATCGGAAG........................................................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CGCGAGTAAGTTCCTCCAACAAT......................................................................................................................................................................................................................................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GCGCGTGAGTTCCTCCAAAAAT......................................................................................................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GCGTGTAAGTTCCTCCTACAC.......................................................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCGTAAATCGACAGAATAA...................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................AGCTTCCGTGAAATGCTT....................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TCGCCTGTAAGTTCCGCCTA............................................................................................................................................................................................................................................................................................................................................................................. 20 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................TTAGGCTAGATTAAGAACTA................................................................................................ 20 3 7 0.29 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAGTCTAAGACAGTGAAA............................................................................................................................................................................ 18 2 8 0.25 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............GCGTACGTTCCTCCAACAAG......................................................................................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TGTCAATCGGAAGAATAAAAG................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................TTAGGCTAGATTAAGAAC.................................................................................................. 18 3 20 0.25 5 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GCGTGAGAGTTCCTCCAACAA.......................................................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............CGTGTGAGTGCCTCCAAAAG.......................................................................................................................................................................................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAATACGAACAGTCAAGTTTAA................................................................................................................................................................................................................................................... 22 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ATGAACGAATAGATAGTGTAA...................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................ACAGTTCGTGCTTTGTAA............................................................................................................................................................................................................................................................................................................................................ 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CGTAGGTTTGATTAAGAAAAA................................................................................................ 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................GTCAATCGGAAGAATAAAAG................................................................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................AATTAAGTTTTTTAGTTCGACGT.................................................................................................................. 23 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................AACTTGATTTTGGTATAA........................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................................................TTAGGCTAGATTAAGAACT................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TAACGAGAAATGCTTCAGA................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................................................................................CAATGCTTAAGAGGAAGGA............................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:767126-767519 + dvi_3298 ACGTTATCGAGCGCACATTCAAGGAGGTTTTTCCAGATAGTCCATGTGAAGTACGAAACATTTTTTACAACATTTAAAAATTAAATTTTC-----TG-------------ATTACGCT--------GCGTATTTTAC----TGATG-CTTATTGATT----------------------TTGATTA-T-GCTTTTAAGTTC-ACATT-TAGCTTTCTT-AT------TATCTAGAT---------------------TCATTAACATTT------TTGCTTT-T-----------TCTTGCT-----------------------------------------------------------------------------TAGCTATCA----------GATTAT--TTCACTT------------------------TTA-----TCACCTT-TATCATTTGAA--------CTAAAACTATAATTGTTAATT--CTAACAATCAGGC--------------------------------------TGCATC-CCAACTAATTC--------TTGATTAAC--A--------AA----------------------------------------------------------------TCGAAAGCTCT---------TTACG-----AATTCTCTTTCTTTTATTTCTAGCTGTATGCATATGATGAGCTATGAATTTTTTAAT-GCTAAATA--------TTGTTCAT
droMoj3 scaffold_6540:12205062-12205440 - ACGTTATTGAGCGCACATTCAAGGAGGTATTTCCAGAGAGTCCATGTGAAGTACGAAATATTTTTTACAACATTTAA----------------------------------AATCGCT--------GCGAATCTTGCTTATTGATG-CTTATTCATT----------------------TTCATTTGCTT---TTAAGTTT-TGCTT-TAGCTCTTTTCAT------ATTCTAGATGA----------------------TT----GCC------CAGCT------------------------------------------------------------------------------------------------------------------------TCAG--TTCACTCTATCTCTATCCTCTTCTTTCACATCTA-----TCACC----------TAATTCAATAATCTGAAATCACAATTTTCTATT--CTAAGAATGAGGC--------------------------------------TGCATC-CCAACTAATTG--------TTGTTTAAC--A--------AA----------------------------------------------------------------TCGAAAGCTCT---------TTACG-----TATTCTCTTTCTTTTATTTCTAGCTGTATGCATATGATGAGCTATGAATTTTTTAAT-GCTAAATA--------ATGTTAAT
droGri2 scaffold_14906:1868344-1868766 + ACATTATCGAGCGCACATTCAAGGCGGCATTTCCGGATAAACCATGTGAAGTACGAAATATTTTTTTCAATCTTTAAAAGTTGCAATTTC-----TG-------------ATTACGCT--------GCACATTTTAT----TGATG-CTTAT-----------------------------------------------ATCG-TTT-TCTATAATT--T-TGCTTAAGCTTTCTCAT-------TTTCTTTTAGGTTCATTTTCATTTCCATTGTTGCTTT-T-TA--------TGCTTA----------------------------------------------------------TTTAATAGCTTATCTCTCT------------CTCTCTATCT---A-------TCTC----------------TCACAACCA-----CCACTACTG-TAACTTGAA--ACTAATGTAGAATCACTATTGTTTATTCTCTAACAACGAGGA--------------------------------------TGCATCCCCAACTAATTG--------TTGTTTAAC--A--------AA----------------------------------------------------------------CCGAAAGCTCT---------TTACG-----TATTCTCTTTCTTTTATTTCTAGCAGTATGCATATGATGAGCTATGAATTTTTTAAT-GCTAAATA--------TTGTTCAT
droWil2 scf2_1100000004902:5692616-5692907 + ATGTTATCGAGCGCACATTTAAGCAAGAGTTCCCGGATCGACCATGTGAAGTACGAAATCTATTTTATAATCTTTAAA-----------C-----TTCTATTGCCGACTGCATTTGCTGAGCTTTTGCGCTT-T-------TAATGCCTAACACAATT--T-----------C---GTTATCGCTTGCAT---AT-AGCACAAGTTA-TCATTTCTTATAT------AATTTCGAATATTATTATTTTTTGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGCC-----TTTTTTTTTATTATTATTTTTGAAGAATTGCTTTAAGTACGATTTTGATTTTGTAGC-TTACAATAATAACAACTTGATTGC
dp5 2:2294381-2294847 + ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGCAATCTTTTTTATAATCTATAAC-----------C-----TC-------------CGCTTGCC--------GCGCTT-TTGC----CACTG-CTAACACACGTT-A-----------T---GTTATCGCTTAT-T------------------ATCATCAAT--AT------TCTATTTG-AA----------------------TT----GCT------TTCG----------------TACTTA-TAAGTCGGTAGATCGATCGTTCGTTGGTAGCCGTCCCATCAGCCGAGGA----CTTGATTTACAGGATATATCACT------------CGCACTGGCA---G-------TCGA----------------CACACACCA-----TACCCATTGTTCATTTGATCCCATATTC--------GT-------ATT--C---GTATTCGTTTGCATGCCATTTGTCGGAGGGAAGCTCCCAAGTAGTTCCGCA--ACCGATTAACCA--------TTGTTCAAC--C--------GACCGAAAGCTATGTT--TAC-----------------------------------------------------------------CTATG-----TATTCTCTTTCTTTTATTTCTAGCTGTATGCATTTGAAGATATATGAGTTTTGTAAT-ACCTAATA--------TTGTACAT
droPer2 scaffold_7:2459541-2460007 + ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGCAATCTTTTTTATAATCTATAAC-----------C-----TC-------------CGCTTGCC--------GCGCTT-TTGC----CACTG-CTAACACACGT--T-----------T--TGTTATCGCTTAT-C------------------ATCATCAAT--AT------TCTATTTG-AA----------------------TT----GCT------TTCG----------------TACTTA-TAAGTCGGTAGATCGATCGTTCGTTGGTAGCCGTCCCATCAGCCGAGGA----CTTGATTTACAGGATATATCACT------------CGCACTGGCA---G-------TCGA----------------CACACACCA-----TACCCATTGTTCATTTGATCCCATATTC--------GT-------ATT--C---GTATTCGTTTGCATGCCATTTGTCGGAGGGAAGCTCCCAAGTAGTTCCGCA--ACCGATTAACCA--------TTGTTCAAC--C--------GACCGAAAGCTATGTT--TAC-----------------------------------------------------------------CTATG-----TATTCTCTTTCTTTTATTTCTAGCTGTATGCATTTGAAGATATATGAGTTTTGTAAT-ACCTAATA--------TTGTACAT
droAna3 scaffold_12911:5118052-5118443 + ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTTTATAATCTATAAT-----------C-----TC-------------GAATCGCT--------GCGCTTCTTGC----CACTG-CTAACACACAC--ATAAACGCTTC-T--CTTTATCGCTTGCAT------ACCACCG-AT--TTGATCATT--AT------AGCCTTTGGAA----------------------TT----GCC------TTACTTA-T-----------T--A--------------------------------------------------GA----TTTGGC--------C--------TCAGAT--------------CAG---ATCCCATCAGA----------------------TCA-----TACCCAT----------------------------------------------------------------------------------------------------------TTATCA--------CTGTTA----CCCCCTCCATGT------TCCATGTT--CAGTTTTTCCCCGGGGGGTTCCCCTAACGTAGGGG---A-------ACTCCTAACATTTAATCA-TGGTTACT-----TATTCTCTTTCTTTTATTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCAT
droBip1 scf7180000396640:1952372-1952787 + ACGTTATCGAGCGCACATTCAAGCAAGAGTTCCCGGATCGACCATGTGAAGTACGAAATCTGTTTTATAATCTATAAT-----------C-----TC-------------GAATCGCT--------GCGCTTCTTGC----CACCG-CTAACACACAC--ATACTCGCTTC-T--CTTTATCGCTTGCAT------AGCACAG-TT--TTGATCATT--AG------AGCCTTTTAAA----------------------TT----GCC------TTACTTA-------------ATACAATTTAATCAGTAACTAAATCA--------------------TTCAAGAGGA----TTTGGC---GATGAT--------TGA--TA--------------AGACGTTGCCATCAGA----------------------TCA-----GACCCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGTTA----TC--------GT------CCCATGTT--CAGTTTT-------GTGGTTCCCCTA-----GGGG---ACCCAGCGACTCCTAACATTTAATCA-CGGTTACT-----TATTCTCTTTCTTTTATTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCAT
droKik1 scf7180000302404:140912-141290 - ACGTTATCGAGCGCACATTCAAGCAGGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTTTTTTATAATCTATAA------------ATAATCTT-------------GGAAC-------AGTTGCGCTT-T--------------TAACACACAT--A-----------TTTTATTATCGCTTTT-T------GCCATCA-TTA-TTA-T--AT--AT------AGCCTTTTGAG----------------------TT-------------TTGCTTC-TTAATACTTAGTGTATGGTTCAATCGGCAAA-AGA-----------------------CTAAGGTGAAAGATTTTGGT---TATGAT-------TTGAGCTA--G----------CA---G-TCCTATTCGA----------------AAC---ACG-----TCGCCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGTCG----TC----------------------------------------------------------------ACC----TA--CGCAACATTTAACCTTTGGCCACCTTGTTTATTCTCTTCTTTA--TTTCTAGCCGTATGCATATGATGATATATGAGTTTTGTAATTGATAA-----------TTGTTCAT
droFic1 scf7180000453826:1182896-1183299 - ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTCAAGTACGAAATCTGTTCTATAATCTATAA------------C-----TT-------------GGTTCGCT--------GCGCTT-TTGC----CACTG-CTAACACATAT--AT----------T--TTTTATCGCTTGCAA------AGCACAG-TTT-TTGGTCATT--AT------AGCTTTTGAAA----------------------TT----GCC------TTAGTT----------------TTGATTTAATCAGTAGATCGA-----------------------GACCAGAGGA----CTTGGT---AATGAT--------TGAGTTATCA----------CT--A--TTTTATTCGA----------------------TCGCCACCTCACCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGTTA----TC--------GT------CCCATGCT--CAGTT---------GGGGTTTCCCTA-----GCC-CTCGCCCT-TGCCTCGTAACCTCTAATCA-TGGCTACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCAT
droEle1 scf7180000491280:1658553-1658948 + ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTCTAA------------C-----TC-------------GGTTCGCT--------GCGCTT-TCGC----CACCG-CTAACATACAT--A-----------T--TTTAATCGCTTGCAT------AGCACCG-TTT-TTGGTCATT--AT------AGCCTTTGAAA----------------------TT----GCC------TTGTTTT-T-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACAAGCGGA----TTTGGT---AATGAT--------TGAGATATCA----------CAG----TTTCATTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGCTA----TC--------GT------TTTATGTT--CAGTT---------GGGGGTGCCC------------TTGCCCA-CGAATCGTAACCTCTAATCT-TGGCTACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCAT
droRho1 scf7180000780093:264091-264484 - ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTATAA------------C-----TC-------------GGTTCGCT--------GCGCTT-TCGC----CACTG-CTAACACACAT--A-----------T---TTTATCGCTTGCAT------AGCACCG-TTT-TTGATCATT--AT------AGCCTTTGAAA----------------------TT----GCC------TTGTTTT-------------TTCTGATTTAATCAGTAGATCGA-----------------------CACCAGCGGA----TTTGGT---AATGAT--------TGAGCTATCA----------CAG----ATTCATTCGA----------------------TTG-----TCACCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGCTA----TC--------GT------CTTATGTT--CAGTT---------GGGGGTTCCC------------TCGCCCA-TGTCTCGTAACCTCTAATCA-TGGCTACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCAT
droBia1 scf7180000302136:2667846-2668254 - ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTATAA------------C-----TT-------------GGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACACATTTA-----------T--TTTTATCGCTTGCAT------AGCACCG-TTTTTTGGTCATT--AT------AGCCTTTGAAA----------------------TT----GCC------TTGTTT--------------TTCTGATTCAATCAGTAGATCTA-----------------------CACCAGCGGA----TTTGGT---AATGAT--------TGTGCTATCA----------CAG----TTTCATTCGA----------------------TGG-----TCACCAT----------------------------------------------------------------------------------------------------------TAATCAACATCATACTGTTA----TC--------GT------CCCATGTT-GTAGTT---------GGGGTTCCCCC----------GTCGCCCACTGACTTGTAACCTCTAATCG-TGGCCACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTTA-----------TTGTTCAT
droTak1 scf7180000415367:595806-596199 + ACATTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGATGTACGAAATATTTTCTATAACATATAA------------C-----TC-------------GGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACACTT--ATATA---TTTAT---TTTATCGCTTGCAT------AGCACCG-TTT-TTGGTCATTCGAT------AGCCTTTGAAA----------------------TT----GCC------TTGTTTTGT-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACCAGAGGA----TTTGGT---AATGAT--------TGAGCTGTCG----------CAGTTG-TTTCATTCGA----------------------TCG-----TATCCAT----------------------------------------------------------------------------------------------------------TAATCA--------TTGTTAATCA-C--------GT------CCCCTGCT--TAGTC---------G-------------------------------ACTTGTAACCTCTAATCA-TGGCCACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------CTGTTCAT
droEug1 scf7180000409787:119572-119977 - ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTATAA------------C-----TC-------------GGTTTGCT--------GCGCTT-TCGC----CAATG-CTAACACTCAT--A-----------T--TTTTATCGCTTGCAT------AGCACCG-TTTTTTGGTCATT--TT------AGCTTTTGAAA----------------------TT----GCC------TTGTTTTGT-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACCTGAGGA----TTTGGT---AATGAT--------TGTGCTATCACTATCA----CA---G-TTTCATTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGTTA----TC--------GT------CCCATGTTTTTAGTT---------GGGCTTCCCC------------TCGCCTA-TGTCTCGTAAACTCTAATCA-TGGCCACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCAT
dm3 chr3R:25423146-25423544 + ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTGTAA------------C-----TC-------------AGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACATAT--A-----------T---TTTATCGCTTGCAT------AGCACCG-TTT-TTGGCCATT--ATAGCCGTAGCCTTTGAAA----------------------TT----GCC------TTGTTTT-T-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACCAGAGGA----TTTGGT---AATGAT--------AGAGCTATCA----------CAGCAG--TTCATTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------TCACCA--------TTGT------------------------TCCATGTT--TAGTT---------G-GGTTCCCCT----------CTCGGCCC-TTAATCGTAACCTCTAATCA-TGGCTGCC-----TATTCTCTTTCTTTT-TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCAT
droSim2 3r:24782349-24782754 + dsi_1519 ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTGTAA------------C-----TC-------------AGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACATAT--A-----------T---TTTATCGCCTGCAT------AGCACCG-TTT-TTGGCCATT--ATAGCCGTAGCCTTTGAAA----------------------TT----GCC------TTGTTTT-T-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACCAGCGGA----TTTGGT---AATGAT--------AGAGCTAGCA----------CAGCAG--TTCATTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------TAACCA--------CTGTTA-TCATC--------GT------GCCATGTT--TAGTT---------G-GGTTCCCC------------TCGCCCC-TTAATCGTAACCTCTAATCA-TGGCTGCC-----TATTCTCTTTCTTTT-TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCAT
droSec2 scaffold_706:1090-1495 + ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTGTAA------------C-----TC-------------AGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACATAT--A-----------T---TTTATCGCCTGCAT------AGCACCG-TTT-TTGGCCATT--ATAGCCGTAGCCTTTGAAA----------------------TT----GCC------TTGTTTT-T-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACCAGCGGA----TTTGGT---AATGAT--------AGAGCTAGCA----------CAGCAG--TTCATTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------TAACCA--------CTGTTA-TCATC--------GT------GCCATGTT--TAGTT---------G-GGTTCCCC------------TCGCCCC-TTAATCGTAACCTCTAATCA-TGGCTGCC-----TATTCTCTTTCTTTT-TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCAT
droYak3 3R:21052362-21052781 - ACGTTATCGAGCGTACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTGTAA------------C-----TC-------------AGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACATAT--A-----------T---TTTATCGCTTGCAT------AGCACCG-TTTTTTGGTCATT--ATAGCCATAGCCTTTGAAA----------------------TT----GCC------TTGTTTT-TTTTTT------TTTTGATTCAATCAGTAGATCGA-----------------------CACCAGAGGA----TTTGGT---AATGAT--------AGAGCTATCA----------CAGCAG--TTCATTCGA----------------------TCGTCA--ACACCAT----------------------------------------------------------------------------------------------------------TAACCAAC--CA--C-GTTAATCATC--------GT------GCCATGTTTTTAGTT---------G-GATTCCCC------------TCATCCC-TTAATCGTAACCTCTAATCA-TGGCTGCC-----TATTTTTTTTCTTT--TTTCTAGCTGTATGCATACGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCAT
droEre2 scaffold_4820:2576855-2577261 - ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTTTATAATCTGTAA------------C-----TC-------------AGTTCGCT--------GCGCCT-TCGC----TAATG-CTAACACATAT--A-----------T---TTTATCGCTTGCAT------AGCACCG-TTT-TTGGTCATT--ATAGCCATAGACTTTGAAA----------------------TT----GCC------TTGTTTT-------------CTCTGATTCAATTAGTAGATCGA-----------------------CACCAGAGGA----TTTGGT---AATGAT--------AGAGCTATCA----------CAGCAG--TTCATTCGA----------------------TCGTCA--TCACCAT----------------------------------------------------------------------------------------------------------TAACCA--------CTTTTA-TCATC--------GT------GCCATGTT--TAGTT---------G-GGTTCCCC------------TCACCCC-TTAATCGTAACCTCTAATCA-TAGCCGCC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACGTTATCGAGCGCACATTCAAGGAGGTTTTTCCAGATAGTCCATGTGAAGTACGAAACATTTTTTACAACATTTAAAAATTAAATTTTC-----TG-------------ATTACGCT--------GCGTATTTTAC----TGATG-CTTATTGATT----------------------TTGATTA-T-GCTTTTAAGTTC-ACATT-TAGCTTTCTT-AT------TATCTAGAT---------------------TCATTAACATTT------TTGCTTT-T-----------TCTTGCT-----------------------------------------------------------------------------TAGCTATCA----------GATTAT--TTCACTT------------------------TTA-----TCACCTT-TATCATTTGAA--------CTAAAACTATAATTGTTAATT--CTAACAATCAGGC--------------------------------------TGCATC-CCAACTAATTC--------TTGATTAAC--A--------AA----------------------------------------------------------------TCGAAAGCTCT---------TTACG-----AATTCTCTTTCTTTTATTTCTAGCTGTATGCATATGATGAGCTATGAATTTTTTAAT-GCTAAATA--------TTGTTCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........GAGCGCACATTCAAGGAGGTTTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000200000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC--------TTGATTAAC--A--------AA----------------------------------------------------------------TCGAAAGCTCT---------T...........................................................................................2712.002000000002000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGATGAGCTATGAATTTTTT............................2312.002000000000000010000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATGATGAGCTATGAAT.................................2011.001000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCATATGATGAGCTAT.....................................2011.001000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCATATGATGAGCTA......................................1911.001000000010000000000000000000000000000000000000000000000000000000
.....................................................................................TTTTC-----TG-------------ATTACGCT--------GCGTAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCATATGATGAGCTATG....................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................AGTCCATGTGAAGTACGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATCAGGC--------------------------------------TGCATC-CCAACTA..................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAATTTTTTAAT-GCTAAATA--------TT......2611.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAGCTATGAATTTTTT............................2111.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-GCTAAATA--------TTGTTCAT1911.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
ACGTTATTGAGCGCACATTCAAGGAGGTATTTCCAGAGAGTCCATGTGAAGTACGAAATATTTTTTACAACATTTAA----------------------------------AATCGCT--------GCGAATCTTGCTTATTGATG-CTTATTCATT----------------------TTCATTTGCTT---TTAAGTTT-TGCTT-TAGCTCTTTTCAT------ATTCTAGATGA----------------------TT----GCC------CAGCT------------------------------------------------------------------------------------------------------------------------TCAG--TTCACTCTATCTCTATCCTCTTCTTTCACATCTA-----TCACC----------TAATTCAATAATCTGAAATCACAATTTTCTATT--CTAAGAATGAGGC--------------------------------------TGCATC-CCAACTAATTG--------TTGTTTAAC--A--------AA----------------------------------------------------------------TCGAAAGCTCT---------TTACG-----TATTCTCTTTCTTTTATTTCTAGCTGTATGCATATGATGAGCTATGAATTTTTTAAT-GCTAAATA--------ATGTTAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTG--------TTGTTTAAC--A--------AA----------------------------------------------------------------TCG.............................................................................................................2111.001100000
...........CGCACATTCAAGGAGGTATTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........AGCGCACATTCAAGGAGGTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATATGATGAGCTATGAATTTTTT............................2711.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAAT-GCTAAATA--------ATGT....2011.001100000
droGri2
ACATTATCGAGCGCACATTCAAGGCGGCATTTCCGGATAAACCATGTGAAGTACGAAATATTTTTTTCAATCTTTAAAAGTTGCAATTTC-----TG-------------ATTACGCT--------GCACATTTTAT----TGATG-CTTAT-----------------------------------------------ATCG-TTT-TCTATAATT--T-TGCTTAAGCTTTCTCAT-------TTTCTTTTAGGTTCATTTTCATTTCCATTGTTGCTTT-T-TA--------TGCTTA----------------------------------------------------------TTTAATAGCTTATCTCTCT------------CTCTCTATCT---A-------TCTC----------------TCACAACCA-----CCACTACTG-TAACTTGAA--ACTAATGTAGAATCACTATTGTTTATTCTCTAACAACGAGGA--------------------------------------TGCATCCCCAACTAATTG--------TTGTTTAAC--A--------AA----------------------------------------------------------------CCGAAAGCTCT---------TTACG-----TATTCTCTTTCTTTTATTTCTAGCAGTATGCATATGATGAGCTATGAATTTTTTAAT-GCTAAATA--------TTGTTCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATGTTATCGAGCGCACATTTAAGCAAGAGTTCCCGGATCGACCATGTGAAGTACGAAATCTATTTTATAATCTTTAAA-----------C-----TTCTATTGCCGACTGCATTTGCTGAGCTTTTGCGCTT-T-------TAATGCCTAACACAATT--T-----------C---GTTATCGCTTGCAT---AT-AGCACAAGTTA-TCATTTCTTATAT------AATTTCGAATATTATTATTTTTTGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGCC-----TTTTTTTTTATTATTATTTTTGAAGAATTGCTTTAAGTACGATTTTGATTTTGTAGC-TTACAATAATAACAACTTGATTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................TTTAAGCAAGAGTTCCCGGATCGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
..........................GAGTTCCCGGATCGACCATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
....................AAGCAAGAGTTCCCGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
............................GTTCCCGGATCGACCATGTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
............................GTTCCCGGATCGACCATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..............................TCCCGGATCGACCATGTGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..................TTAAGCAAGAGTTCCCGGATCGACCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
............................GTTCCCGGATCGACCATGTGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.................................CGGATCGACCATGTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
...........CGCACATTTAAGCAAGAGTTCCCGGATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
.....ATCGAGCGCACATTTAAGCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
dp5
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGCAATCTTTTTTATAATCTATAAC-----------C-----TC-------------CGCTTGCC--------GCGCTT-TTGC----CACTG-CTAACACACGTT-A-----------T---GTTATCGCTTAT-T------------------ATCATCAAT--AT------TCTATTTG-AA----------------------TT----GCT------TTCG----------------TACTTA-TAAGTCGGTAGATCGATCGTTCGTTGGTAGCCGTCCCATCAGCCGAGGA----CTTGATTTACAGGATATATCACT------------CGCACTGGCA---G-------TCGA----------------CACACACCA-----TACCCATTGTTCATTTGATCCCATATTC--------GT-------ATT--C---GTATTCGTTTGCATGCCATTTGTCGGAGGGAAGCTCCCAAGTAGTTCCGCA--ACCGATTAACCA--------TTGTTCAAC--C--------GACCGAAAGCTATGTT--TAC-----------------------------------------------------------------CTATG-----TATTCTCTTTCTTTTATTTCTAGCTGTATGCATTTGAAGATATATGAGTTTTGTAAT-ACCTAATA--------TTGTACATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............GCACATTCAAGCAAGAGTTTCCGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
................ATTCAAGCAAGAGTTTCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................ATTTACAGGATATATCACT------------CG..........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................AAGAGTTTCCGGATCGACCATGTGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
..GTTATCGAGCGCACATTCAAGCAAGAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
............................GTTTCCGGATCGACCATGTGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
...................CAAGCAAGAGTTTCCGGATCGACCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
..............................TTCCGGATCGACCATGTGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGCAATCTTTTTTATAATCTATAAC-----------C-----TC-------------CGCTTGCC--------GCGCTT-TTGC----CACTG-CTAACACACGT--T-----------T--TGTTATCGCTTAT-C------------------ATCATCAAT--AT------TCTATTTG-AA----------------------TT----GCT------TTCG----------------TACTTA-TAAGTCGGTAGATCGATCGTTCGTTGGTAGCCGTCCCATCAGCCGAGGA----CTTGATTTACAGGATATATCACT------------CGCACTGGCA---G-------TCGA----------------CACACACCA-----TACCCATTGTTCATTTGATCCCATATTC--------GT-------ATT--C---GTATTCGTTTGCATGCCATTTGTCGGAGGGAAGCTCCCAAGTAGTTCCGCA--ACCGATTAACCA--------TTGTTCAAC--C--------GACCGAAAGCTATGTT--TAC-----------------------------------------------------------------CTATG-----TATTCTCTTTCTTTTATTTCTAGCTGTATGCATTTGAAGATATATGAGTTTTGTAAT-ACCTAATA--------TTGTACATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................ATTCAAGCAAGAGTTTCCGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2316.006600000
...................CAAGCAAGAGTTTCCGGATCGACCATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
...............CATTCAAGCAAGAGTTTCCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
...............CATTCAAGCAAGAGTTTCCGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
......................................................................................................................................................................................................................................................................................................................TAGATCGATCGTTCGTTGGTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................ATTCAAGCAAGAGTTTCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.................TTCAAGCAAGAGTTTCCGGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................TTCAAGCAAGAGTTTCCGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droAna3
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTTTATAATCTATAAT-----------C-----TC-------------GAATCGCT--------GCGCTTCTTGC----CACTG-CTAACACACAC--ATAAACGCTTC-T--CTTTATCGCTTGCAT------ACCACCG-AT--TTGATCATT--AT------AGCCTTTGGAA----------------------TT----GCC------TTACTTA-T-----------T--A--------------------------------------------------GA----TTTGGC--------C--------TCAGAT--------------CAG---ATCCCATCAGA----------------------TCA-----TACCCAT----------------------------------------------------------------------------------------------------------TTATCA--------CTGTTA----CCCCCTCCATGT------TCCATGTT--CAGTTTTTCCCCGGGGGGTTCCCCTAACGTAGGGG---A-------ACTCCTAACATTTAATCA-TGGTTACT-----TATTCTCTTTCTTTTATTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................T------AGCCTTTGGAA----------------------TT----GCC------TTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.................TTCAAGCAAGAGTTTCCGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
............GCACATTCAAGCAAGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.....ATCGAGCGCACATTCAAGCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
droBip1
ACGTTATCGAGCGCACATTCAAGCAAGAGTTCCCGGATCGACCATGTGAAGTACGAAATCTGTTTTATAATCTATAAT-----------C-----TC-------------GAATCGCT--------GCGCTTCTTGC----CACCG-CTAACACACAC--ATACTCGCTTC-T--CTTTATCGCTTGCAT------AGCACAG-TT--TTGATCATT--AG------AGCCTTTTAAA----------------------TT----GCC------TTACTTA-------------ATACAATTTAATCAGTAACTAAATCA--------------------TTCAAGAGGA----TTTGGC---GATGAT--------TGA--TA--------------AGACGTTGCCATCAGA----------------------TCA-----GACCCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGTTA----TC--------GT------CCCATGTT--CAGTTTT-------GTGGTTCCCCTA-----GGGG---ACCCAGCGACTCCTAACATTTAATCA-CGGTTACT-----TATTCTCTTTCTTTTATTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCATSizeHit CountTotal NormTotal
No Reads
droKik1
ACGTTATCGAGCGCACATTCAAGCAGGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTTTTTTATAATCTATAA------------ATAATCTT-------------GGAAC-------AGTTGCGCTT-T--------------TAACACACAT--A-----------TTTTATTATCGCTTTT-T------GCCATCA-TTA-TTA-T--AT--AT------AGCCTTTTGAG----------------------TT-------------TTGCTTC-TTAATACTTAGTGTATGGTTCAATCGGCAAA-AGA-----------------------CTAAGGTGAAAGATTTTGGT---TATGAT-------TTGAGCTA--G----------CA---G-TCCTATTCGA----------------AAC---ACG-----TCGCCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGTCG----TC----------------------------------------------------------------ACC----TA--CGCAACATTTAACCTTTGGCCACCTTGTTTATTCTCTTCTTTA--TTTCTAGCCGTATGCATATGATGATATATGAGTTTTGTAATTGATAA-----------TTGTTCATSizeHit CountTotal NormTotal
No Reads
droFic1
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTCAAGTACGAAATCTGTTCTATAATCTATAA------------C-----TT-------------GGTTCGCT--------GCGCTT-TTGC----CACTG-CTAACACATAT--AT----------T--TTTTATCGCTTGCAA------AGCACAG-TTT-TTGGTCATT--AT------AGCTTTTGAAA----------------------TT----GCC------TTAGTT----------------TTGATTTAATCAGTAGATCGA-----------------------GACCAGAGGA----CTTGGT---AATGAT--------TGAGTTATCA----------CT--A--TTTTATTCGA----------------------TCGCCACCTCACCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGTTA----TC--------GT------CCCATGCT--CAGTT---------GGGGTTTCCCTA-----GCC-CTCGCCCT-TGCCTCGTAACCTCTAATCA-TGGCTACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCATSizeHit CountTotal NormTotal
No Reads
droEle1
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTCTAA------------C-----TC-------------GGTTCGCT--------GCGCTT-TCGC----CACCG-CTAACATACAT--A-----------T--TTTAATCGCTTGCAT------AGCACCG-TTT-TTGGTCATT--AT------AGCCTTTGAAA----------------------TT----GCC------TTGTTTT-T-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACAAGCGGA----TTTGGT---AATGAT--------TGAGATATCA----------CAG----TTTCATTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGCTA----TC--------GT------TTTATGTT--CAGTT---------GGGGGTGCCC------------TTGCCCA-CGAATCGTAACCTCTAATCT-TGGCTACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCATSizeHit CountTotal NormTotal
No Reads
droRho1
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTATAA------------C-----TC-------------GGTTCGCT--------GCGCTT-TCGC----CACTG-CTAACACACAT--A-----------T---TTTATCGCTTGCAT------AGCACCG-TTT-TTGATCATT--AT------AGCCTTTGAAA----------------------TT----GCC------TTGTTTT-------------TTCTGATTTAATCAGTAGATCGA-----------------------CACCAGCGGA----TTTGGT---AATGAT--------TGAGCTATCA----------CAG----ATTCATTCGA----------------------TTG-----TCACCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGCTA----TC--------GT------CTTATGTT--CAGTT---------GGGGGTTCCC------------TCGCCCA-TGTCTCGTAACCTCTAATCA-TGGCTACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCATSizeHit CountTotal NormTotal
No Reads
droBia1
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTATAA------------C-----TT-------------GGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACACATTTA-----------T--TTTTATCGCTTGCAT------AGCACCG-TTTTTTGGTCATT--AT------AGCCTTTGAAA----------------------TT----GCC------TTGTTT--------------TTCTGATTCAATCAGTAGATCTA-----------------------CACCAGCGGA----TTTGGT---AATGAT--------TGTGCTATCA----------CAG----TTTCATTCGA----------------------TGG-----TCACCAT----------------------------------------------------------------------------------------------------------TAATCAACATCATACTGTTA----TC--------GT------CCCATGTT-GTAGTT---------GGGGTTCCCCC----------GTCGCCCACTGACTTGTAACCTCTAATCG-TGGCCACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTTA-----------TTGTTCATSizeHit CountTotal NormTotal
No Reads
droTak1
ACATTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGATGTACGAAATATTTTCTATAACATATAA------------C-----TC-------------GGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACACTT--ATATA---TTTAT---TTTATCGCTTGCAT------AGCACCG-TTT-TTGGTCATTCGAT------AGCCTTTGAAA----------------------TT----GCC------TTGTTTTGT-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACCAGAGGA----TTTGGT---AATGAT--------TGAGCTGTCG----------CAGTTG-TTTCATTCGA----------------------TCG-----TATCCAT----------------------------------------------------------------------------------------------------------TAATCA--------TTGTTAATCA-C--------GT------CCCCTGCT--TAGTC---------G-------------------------------ACTTGTAACCTCTAATCA-TGGCCACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------CTGTTCATSizeHit CountTotal NormTotal
No Reads
droEug1
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTATAA------------C-----TC-------------GGTTTGCT--------GCGCTT-TCGC----CAATG-CTAACACTCAT--A-----------T--TTTTATCGCTTGCAT------AGCACCG-TTTTTTGGTCATT--TT------AGCTTTTGAAA----------------------TT----GCC------TTGTTTTGT-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACCTGAGGA----TTTGGT---AATGAT--------TGTGCTATCACTATCA----CA---G-TTTCATTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------TAATCA--------CTGTTA----TC--------GT------CCCATGTTTTTAGTT---------GGGCTTCCCC------------TCGCCTA-TGTCTCGTAAACTCTAATCA-TGGCCACC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCATSizeHit CountTotal NormTotal
No Reads
dm3
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTGTAA------------C-----TC-------------AGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACATAT--A-----------T---TTTATCGCTTGCAT------AGCACCG-TTT-TTGGCCATT--ATAGCCGTAGCCTTTGAAA----------------------TT----GCC------TTGTTTT-T-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACCAGAGGA----TTTGGT---AATGAT--------AGAGCTATCA----------CAGCAG--TTCATTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------TCACCA--------TTGT------------------------TCCATGTT--TAGTT---------G-GGTTCCCCT----------CTCGGCCC-TTAATCGTAACCTCTAATCA-TGGCTGCC-----TATTCTCTTTCTTTT-TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................AAGCAAGAGTTTCCGGATCGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACGTTATCGAGCGCACATTCAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAAGCAAGAGTTTCCGGATCGACCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................GTTTCCGGATCGACCATGTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTTATCGAGCGCACATTCAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAGTTTCCGGATCGACCATGTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATATATGAATTTTGT............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GCAAGAGTTTCCGGATCGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AAGCAAGAGTTTCCGGATCGACCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.............................TTTCCGGATCGACCATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCT----------CTCGGCCC-TTAATCGTAACCTC......................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGTTTCCGGATCGACCATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CAATCAGTAGATCGA-----------------------CACCAGAGGA----...............................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TCAATCAGTAGATCGA-----------------------CACCAGAGGA----T..............................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................G--TTCATTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TATCGAGCGCACATTCAAGCAAGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATTCAAGCAAGAGTTTCCGGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGTTTCCGGATCGACCATGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100000
....................AAGCAAGAGTTTCCGGATCGACCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAATTTTGTAAT-GCTAA-----------TTGTT...2712.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATATGAATTTTGTAAT-GCTAA-----------TTGT....2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTGTAAT-GCTAA-----------TTGT....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-TGGCTGCC-----TATTCTCTTTCTTT....................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................T---AATGAT--------AGAGCTATCA----------CAGCAG--T...........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTTTGTAAT-GCTAA-----------T.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCGTAACCTCTAATCA-TGGCT..........................................................................................2411.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-TTAATCGTAACCTCTAATCA-TG.............................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGCAAGAGTTTCCGGATCGACCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............ACATTCAAGCAAGAGTTTCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................ATCTGTAA------------C-----TC-------------AGTTCGCT--------GCGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............GCACATTCAAGCAAGAGTTTCCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AT--------AGAGCTATCA----------CAGCAG--............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................T---AATGAT--------AGAGCTATCA----------CAGC................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................GCAAGAGTTTCCGGATCGACCATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGAGTTTCCGGATCGACCATGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------TCACCA--------TT....................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAAGCAAGAGTTTCCGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AAGAGTTTCCGGATCGACCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CGA-----------------------CACCAGAGGA----TTTGGT---......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCAAGCAAGAGTTTCCGGATCGACCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................GAGTTTCCGGATCGACCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................AGAGTTTCCGGATCGACCATGTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CGTAGCCTTTGAAA----------------------TT----GCC------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GAGCGCACATTCAAGCAAGAGTTTCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TCAGTAGATCGA-----------------------CACCAGAGGA----TTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------G-GGTTCCCCT----------CTCGGCCC-TTAATCG.............................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCACATTCAAGCAAGAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................CATAT--A-----------T---TTTATCGCTTGCAT------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATGATATATGAATTTTGTAAT-GC......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCAAGCAAGAGTTTCCGGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGAGTTTCCGGATCGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CAAGAGTTTCCGGATCGACCATGTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................C-----TC-------------AGTTCGCT--------GCGCTT-TCGC----C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TGGT---AATGAT--------AGAGCTATCA----------CAGCAG--T...........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ATGTGAAGTACGAAATCTGTTCTAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TTTGGT---AATGAT--------AGAGCTATCA----------CAGCAG--T...........................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGTTATCGAGCGCACATTCAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-TTAATCGTAACCTCTAATCA-TGGCT..........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCT----------CTCGGCCC-TTAATCGTA...........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTTTGTAAT-GCTAA-----------TTG.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................ACCAGAGGA----TTTGGT---AATGAT--------AGGTG...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GCGCTT-TCGC----CAATG-CTAACACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CATTCAAGCAAGAGTTTCCGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATGATATATGAATTT...............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AAGCAAGAGTTTCCGGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................ATCAGTAGATCGA-----------------------CACCAGAGGA----TTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................TT--ATAGCCGTAGCCTTTGAAA----------------------TT----GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AAGTACGAAATCTGTTCTATAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................TCAAGCAAGAGTTTCCGGATCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................AAGAGTTTCCGGATCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCT----------CTCGGCCC-TTAATCGTAACCTC......................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AA------------C-----TC-------------AGTTCGCT--------GCGCTT-TCGC----CAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCAAGCAAGAGTTTCCGGATCGACCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAATTTTGTAAT-GCTAA-----------TTGT....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATATATGAATTTTGTAAT-GC......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CCAGAGGA----TTTGGT---AATGAT--------AGAGC...................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droSim2
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTGTAA------------C-----TC-------------AGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACATAT--A-----------T---TTTATCGCCTGCAT------AGCACCG-TTT-TTGGCCATT--ATAGCCGTAGCCTTTGAAA----------------------TT----GCC------TTGTTTT-T-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACCAGCGGA----TTTGGT---AATGAT--------AGAGCTAGCA----------CAGCAG--TTCATTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------TAACCA--------CTGTTA-TCATC--------GT------GCCATGTT--TAGTT---------G-GGTTCCCC------------TCGCCCC-TTAATCGTAACCTCTAATCA-TGGCTGCC-----TATTCTCTTTCTTTT-TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATGATATATGAATTTTGTAAT-GC......................2711.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATATATGAATTTTGTAAT-........................2211.00100000001000000000
................................................................................................................................................................................................................................................................................................................AATCAGTAGATCGA-----------------------CACCAGCGGA----TT.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
............................................................................................................................................................................................................................TAGCCGTAGCCTTTGAAA----------------------TT----GCC------TTGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
..............................................................................................................................................................................................................................................................................................................TCAATCAGTAGATCGA-----------------------CACCAGCGGA----TT.............................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
...............................TCCGGATCGACCATGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................TAGCA----------CAGCAG--TTCATTCGA----------------------TCG-----TCAC.................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
................................CCGGATCGACCATGTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
...........................................................................................................................................................................................................................ATAGCCGTAGCCTTTGAAA----------------------TT----GCC------TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATATATGAATTTTGTAAT-GC......................2511.00100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................TTTGGT---AATGAT--------AGAGCTAGCA----------CAGCAG--............................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
....TATCGAGCGCACATTCAAGCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGTATGCATATGATGATATATGAA..................................2811.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATATATGAATTTTGTAAT-GCTAA-----------T.......2911.00100000010000000000
droSec2
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTGTAA------------C-----TC-------------AGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACATAT--A-----------T---TTTATCGCCTGCAT------AGCACCG-TTT-TTGGCCATT--ATAGCCGTAGCCTTTGAAA----------------------TT----GCC------TTGTTTT-T-----------TTCTGATTCAATCAGTAGATCGA-----------------------CACCAGCGGA----TTTGGT---AATGAT--------AGAGCTAGCA----------CAGCAG--TTCATTCGA----------------------TCG-----TCACCAT----------------------------------------------------------------------------------------------------------TAACCA--------CTGTTA-TCATC--------GT------GCCATGTT--TAGTT---------G-GGTTCCCC------------TCGCCCC-TTAATCGTAACCTCTAATCA-TGGCTGCC-----TATTCTCTTTCTTTT-TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................CAAGCAAGAGTTTCCGGATCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------TAACCA--------CTGTTA-TCATC--------GT------GCCATGTT--................................................................................................................................................................2820.5011000
...........................AGTTTCCGGATCGACCATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010010
.....................AGCAAGAGTTTCCGGATCGACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010100
............................GTTTCCGGATCGACCATGTGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010001
....TATCGAGCGCACATTCAAGCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010010
droYak3
ACGTTATCGAGCGTACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTCTATAATCTGTAA------------C-----TC-------------AGTTCGCT--------GCGCTT-TCGC----CAATG-CTAACACATAT--A-----------T---TTTATCGCTTGCAT------AGCACCG-TTTTTTGGTCATT--ATAGCCATAGCCTTTGAAA----------------------TT----GCC------TTGTTTT-TTTTTT------TTTTGATTCAATCAGTAGATCGA-----------------------CACCAGAGGA----TTTGGT---AATGAT--------AGAGCTATCA----------CAGCAG--TTCATTCGA----------------------TCGTCA--ACACCAT----------------------------------------------------------------------------------------------------------TAACCAAC--CA--C-GTTAATCATC--------GT------GCCATGTTTTTAGTT---------G-GATTCCCC------------TCATCCC-TTAATCGTAACCTCTAATCA-TGGCTGCC-----TATTTTTTTTCTTT--TTTCTAGCTGTATGCATACGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................G-TTTTTTGGTCATT--ATAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...........................................................................................................................................................................................................................ATAGCCATAGCCTTTGAAA----------------------TT----GCC------TTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
..............ACATTCAAGCAAGAGTTTCCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
................ATTCAAGCAAGAGTTTCCGGATCGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...................CAAGCAAGAGTTTCCGGATCGACCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
................ATTCAAGCAAGAGTTTCCGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................GAGGA----TTTGGT---AATGAT--------AGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
................ATTCAAGCAAGAGTTTCCGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATC--------GT------GCCATGTTTTTAGTT---------G-G...............................................................................................................................................2611.00101000000000
....TATCGAGCGTACATTCAAGCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..............................TTCCGGATCGACCATGTGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.....ATCGAGCGTACATTCAAGCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
...................CAAGCAAGAGTTTCCGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
droEre2
ACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGACCATGTGAAGTACGAAATCTGTTTTATAATCTGTAA------------C-----TC-------------AGTTCGCT--------GCGCCT-TCGC----TAATG-CTAACACATAT--A-----------T---TTTATCGCTTGCAT------AGCACCG-TTT-TTGGTCATT--ATAGCCATAGACTTTGAAA----------------------TT----GCC------TTGTTTT-------------CTCTGATTCAATTAGTAGATCGA-----------------------CACCAGAGGA----TTTGGT---AATGAT--------AGAGCTATCA----------CAGCAG--TTCATTCGA----------------------TCGTCA--TCACCAT----------------------------------------------------------------------------------------------------------TAACCA--------CTTTTA-TCATC--------GT------GCCATGTT--TAGTT---------G-GGTTCCCC------------TCACCCC-TTAATCGTAACCTCTAATCA-TAGCCGCC-----TATTCTCTTTCTTT--TTTCTAGCTGTATGCATATGATGATATATGAATTTTGTAAT-GCTAA-----------TTGTTCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............GCACATTCAAGCAAGAGTTTCCGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
..................TCAAGCAAGAGTTTCCGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCATATGATGAT.........................................1811.0010000010
.......................CAAGAGTTTCCGGATCGACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
....................AAGCAAGAGTTTCCGGATCGACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000

Generated: 05/16/2015 at 10:11 PM