ID:

dvi_3292

 Coordinate:

scaffold_12855:651228-651378 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.5 -6.9 -6.9 -6.8

Flybase annnotation

exon [dvir_GLEANR_10472:2]; CDS [Dvir\GJ10556-cds]; intron [Dvir\GJ10556-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron-
mature
  1. dvi_3292  scaffold_12855:651265-651289 -
  2. scaffold_12932:127478-127502 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGCAGCGTCTAAATGTGCCCAACGTCTTGCGTCTGTTTTGGATCATTAGGTATGTAGCTTAAAATTACACATCACACAAGCAATTTATAATTTTACTTGACCCATTAAAAATGGGTAAGAGGGGTATTATGTATTTGTCCAAATGTATGGAACAGGCAGAAGGAAGCATATCCAATCCTATAAATTATATAAATTCTTGATCACCATCAATAGCCGACTCGATCTAGCCATGTCCGTCCGTATGTGTGAA
*********************************************************************************************************......................((......(((((((......)))).)))......))*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060684
140x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 GSM1528803
follicle cells		 SRR060666
160_males_carcasses_total
 SRR060681
Argx9_testes_total
 M061
embryo
 SRR060676
9xArg_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060657
140_testes_total
 SRR060667
160_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR060655
9x160_testes_total
 SRR060658
140_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 V053
head
................................................................................................CTTGACCCATGAAGAATGTG....................................................................................................................................... 20 3 7 1.14 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CGTCTTGCGTCTGTTTTGGATCATTA.......................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CCAAATGTATGGAACAGGCAGAAGG....................................................................................... 25 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CTAAATGTGCCCAACCTCTT.............................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTAAAAATGGGTAAGAGGG............................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GTCTTGCGTCTGTTTTGG................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....AGCGTCTAAATGTGCCCAAC................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CTTGACCCATGAAGAATGT........................................................................................................................................ 19 3 20 0.80 16 4 1 1 1 1 1 0 4 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0
..........................................ATCAATAGGAATGTAGCTT.............................................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTAACGTCTTGCGAGTGTTT.................................................................................................................................................................................................................... 20 3 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CGTCCTGCGTCTGCTTTGG................................................................................................................................................................................................................. 19 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AATTTTTAATTTTATTAGACCCA.................................................................................................................................................. 23 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AAATGTATGGAACAGGCAGAAGGAAG.................................................................................... 26 0 10 0.20 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCAATAGCCGACTCGATCTAGCCAAG.................. 26 1 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................ATCCGTAGGAATGTAGCTT.............................................................................................................................................................................................. 19 3 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................ATGTATGGAACAGGCAGAAGGAAGC................................................................................... 25 0 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TATGGAACAGGCAGAAGGAAG.................................................................................... 21 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAAATGTATGGAACAGGCAGA.......................................................................................... 21 0 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GGAACAGGCAGAAGGAAGC................................................................................... 19 0 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................ATCCATAGGGATGTAGCTT.............................................................................................................................................................................................. 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCCGACTCGATCTAGCCATGTC................ 22 0 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTTGTCCAAATGTATTGAA.................................................................................................. 19 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTCTTGATCACCATCAATAGCCG.................................. 23 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ACTCGATCTAGCCATGTCCGT............. 21 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................GGCACAGGCAGAAGGAAGC................................................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCGATCTAGCCATGTCCGT............. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................CATCAATAGCCGACTCGATCTTGC...................... 24 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TGGAGCATTGGGTATGTTG................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................TGAAGGACGCATAACCAAT.......................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

ACCGTCGCAGATTTACACGGGTTGCAGAACGCAGACAAAACCTAGTAATCCATACATCGAATTTTAATGTGTAGTGTGTTCGTTAAATATTAAAATGAACTGGGTAATTTTTACCCATTCTCCCCATAATACATAAACAGGTTTACATACCTTGTCCGTCTTCCTTCGTATAGGTTAGGATATTTAATATATTTAAGAACTAGTGGTAGTTATCGGCTGAGCTAGATCGGTACAGGCAGGCATACACACTT
***************************************************************************************......................((......(((((((......)))).)))......))********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060673
9_ovaries_total
 V053
head
 SRR060679
140x9_testes_total
 V116
male body		 SRR060680
 9xArg_testes_total
 M027
male body		 SRR060687
9_0-2h_embryos_total
........................CAGAACGCAGACAAAACCTAG.............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................AGTGTGTTCGTTAAACACT................................................................................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................TAGTTATCGGCTGAGCTAGATCG...................... 23 0 9 0.11 1 0 0 1 0 0 0 0
.........................................................................................TCAAAATGAATTGGGTAATTA............................................................................................................................................. 21 3 16 0.06 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................AACTAGTGGTAGTTATCGGC.................................. 20 0 18 0.06 1 0 0 0 0 1 0 0
..............................................................................................................TTGCCTATTCTCACCATAA.......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0
.CCGTCGCAGATTTGGAAG........................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:651178-651428 - dvi_3292 TGG-C-------------AGCGT----CTAAATGTGCC------CAA-------C--------GTCTTGCGTC--------------------TGTT-------TTGG---------------------------------------------ATCATT--------------------------------------------------------AGG-TATGTA---------------G-------CTT-------------A------AA------------ATTAC--------------ACAT---CACACAAGCAATTTATA--------------------------------------ATT------------TTACTTGACCCATTAAAA---AT--------GGGTAAGAGGGGTATTATGTATTTGTCCAAA-------TGTATGGAACAGGCAGAAGGAAGCATATCCAATCCTATAAATTATAT---AAATTCTTGATCACCATCAATAGCCGACTCGATCTAGCCATGTCCGTCCGTATGTGTGAA--------
droMoj3 scaffold_6308:816528-816779 - dmo_417 ATT-C-------------AGCTT----------------------------------------T--TGGCGCCCAATATCAATC---------TGG-TCGATT---T-----------------CAT--------------------------TC------------------------------------------------------------CGG-TAGGTT---------------G-----CACTG-------------A------AA------------ATTAT--------------ACATATACATA----------------TATATGTA----------TA--------TA-----TGA-----------ATTTTTATACCCTGAACCCATTGAAAAT----GGGAAATCAGGGTATAATGGTTTTGT-GAAA-------AGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATAT---ATATTCTTGATCAGCACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCGT-------------
droGri2 scaffold_15126:4102881-4103101 + AAA-A-------------ATGCC---------------------CT-------AC--------TTATTAA-------------------------------TT---G-----------------CAATTC-----AG-------------------------TATTATTGAT-----------------------------------------------GATTCA---------------G-------CTC-------------A------AT------------ATT------------------CT-----------------------TGCATACT----------AT-------------------------------GATAATAGCCTG-ACCCATTAAAAAT----G--GAAAAATGGTATAATGAAGTGGTGCAAA-------AGTATGTAACAGGCAGAAGCAAGCATCTCCGACCCCATAAAGCATAT---AGATTCTTGATCAACATCATCAGCCGAGTTAATTTAACTACATCCATTTGT-----------------
droWil2 scf2_1100000004963:294180-294417 - AAC-G--T-------------------TTATATG----CATA-----------ACTCGACTGTT--TTTTGTC--------------------CGAT----TT---TG---------------------------------------------ATC------------------------------------------------------AAATTTGG-TATTTT---------------G-------CTA-------------T------AT------------ATTA-GTATTAAATTTAAGTGTG---------------------------------------------------------------------------------CC------AAATTGGAAATGGTTAGGGTGAAATGGTATATTAAAGTCGACAAAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATAT---ATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGTCCGT-------------
dp5 Unknown_singleton_791:5526-5759 - GCA-A---------------ACT----CTAAAGG----CGCGCC---------GC--------GTTTTGTATT--------------------GGT-----TTA--TG----------A-----------------------------------GA------TATTATCATC--------------------------------------------------------------------G-----------------------------------------------------------------TT---TAA--------------------A------TCAAATCTCT--------TT-----GCA-----------CTTTTTATACTCGATACTC---AA-AA-----AGAGTATAGGGGTATATTAGATTAGCGGGGAAAGTGGATTTGTGTAACACCCAGAAGGAAGCGTTTCCGATCCCATAAAGTGTAT---ATATTCTCGATCATCATCAATAGACGAGTTAATATAGCCATGCCCGTCCGT-----------------
droPer2 scaffold_645:4511-4764 - GCT-T--T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCTGGTCATTGTTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGGCATAAGTCAA-T---G--------TG-----TTT-----------GTTTTTATACCCGATACTC---AA-AA-----TGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATAT---ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTG----------
droAna3 scaffold_13099:614756-614981 - AAT-G--TTTTTATCTTT------------------------------------------------GCGCATT--------------------TATT-------TTAG---------------------------------------------ATTAATACA-------TG--------------------------------------------------T---------------------TT-ATTA----TATGAT--------------------------------------------TGAT---CGGATATGCCAT---------------------------A------GCTT-----TGT-----------TTTTTTATACCCT-----T---GC--------A------GAGGGTATTATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT---ATATTCTTGATCAAGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTC--------
droBip1 scf7180000396580:334335-334558 - TGC-C--C-----------------AGCTGAATGTACC------AAA-------A--------GTGCT--------------------------------------G-----------------------CTTCCCTGGGGGTTTTTAACCG---------------------------------------------------------TAATATTAAAA---------------TATCCA----T-----------------------------------------------------------------------------TTATA--------------------------------------TTC-----------ATATTTATACCCT-----T---GC--------A------GAGGGTATTATAATTTTGTCCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTC--------
droKik1 scf7180000297858:1903-2124 - AAT-G--T---------------------------------------------------------TATGTGTA--------------------TGT-----TTT--CA----------GAATTTTAT------------------------------------------------------------------TTATGCTATTTATAAATAATATACA---------------TATAACAT----T-----------------------------------------------------------------------------TTATATTTTC--------------------------TTTT---ATT-----------TTTATTATACCAT-----T---G----------------CAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGT-------------
droFic1 scf7180000453124:4525-4721 + GCG-T-------------TTTTT---------------------------------------------------------------------------------TTAAATTTTT---------------------------------------------------------------------------------------------------------TTTTTA---------------A-------CTT-------------C------AA------------ATT------------------TT-----------------------TTAATGGA----------AA--------AA-----TAA-----------TTTTTTATACCCT-----T---GC--------AGAGCA-AAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCTATAAAGTATAT---ATATTCTTAATCAGCATCACGATCTGAATCGAAA--------TCCGTCTGTACGTCTGTC--------
droEle1 scf7180000491113:264894-265131 - CAACG--TTTTTCGCTTT----------------------------------------------------------------------------GGT----TT---G-----------------------CATCCATTGGGGTTTTTA------GT------TATTT--------------------------------------TAAATA---TTAAAA-------------TATAACAA----T-----------------------------------------------------------------------------TTTTA------ATATG----------GTG----------TATTT------GAC---TGTTTTTATACCCA-----T---G--------------CAGAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACATTTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGCATCACTCGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGAC--------
droRho1 scf7180000780007:173562-173826 - AGC-G--T-------------------CTAAACTTTAA------CAACAGATTG---------GTTTT--------------------------------------A-----------------------CTTCC-------TTTTCAATTAGAGCTTT--------------------------------------------------------AGG-AAATCAAATTAAATTACGACAGTTTT-CTGA----AACTAAACAGC------AG------------T-------------------------------------TT-----------------------------------------A------GAC---CATAGTTATACCCGTTACTC---GT--------AGAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTG----------
droBia1 scf7180000302027:2836-3064 - TGG-C-------------ATAGA----CTAAAGC---T------TAT-------T--------TTTTAGTATC--------------------TAT-TCCTTT---T-----------------TAA--------------------------CCAATT--------------------------------------------------------AGG-TTT-------------------------------------------------TT-----------------GTATAAAAATTCACTGAT---CCCA--------------------------ACA----------------------TTT-----------ATAAATATACCCT-----T---GC--------A------GAATGTATAATGGTTTCAATCAGA-------AGTTTGCAACGCAGTGAAGGACACGTTTCCGACCTCATAAAGTGTAT---ATATTCTTGATCACCGTCACTCGACGAGTCGATCTAGCCATGTCCGTTTGTCCGT-------------
droTak1 scf7180000415159:213457-213705 + AGG-G-------------AAAAT----GTAAATG----TT--------------------------TTTTAAT--------------------CTTT-------TTAG-TTTTTTTTTG----------------------------------AACATT------------------------------------------------------G--------------------------------AACATCAAATC-------A------AA------------CTTCC--------------AAAA---CACA----------------TTAAAATA----------AA--------TT-----TAA-----------TTTTTTATACCCGTTACTC---GT--------AGAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAACAGGGAGAAGGAAGCGTTTCCGACCCCATAAAGTATAT---ATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTG----------
droEug1 scf7180000409607:2232-2480 - TTA-C-------------AATAA----TTACATG----TGTACT---------AT--------TTTATATATA--------------------CAT-----TTT--GG----------A-----------------------------------TAAAT------TAGAAT--------------------------------------------------T------------------A-----------------------------------------------------------------T----------------CTTAA------ATGAG----------GTGTTATAAGTT-----TGT-----------ATTTTTATAACCGTTACTC---GT--------AGAGTAAAAGAGTATACTAAATTCGTTGAAA-------AGTATGTAACAGATAGAAGGAAGCGTTTGCGACCCTATAAAGTATAT---ATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGCCCGTCTGTCCGTCCGTCCGTATGAA
dm3 chrX:21896171-21896387 + CCC-A--C------CA------T----------------------------------------T--TCCCGCC--------------------CAT-----TTT--GC----------ACATGAAAT------------------------------------------------------------------GGATACTATCT-------------------------------------------------------------------------------------------------------------------------AGA-TTGCCACACA----------AA--------TA-----TTA-----------ATTTTTATACCCGTTACTC---GT--------AGAGTAAAAGGGTATACTAGATTCTTTGAAA-------AGTATGTAACACGCAAAAGGAAGCGTTTTCGACTATATAAAGTATATATTATATTCTTGATCAGGATTAATAGCCGAATCGATCTAGCCATGTCTGTCTGT-----------------
droSim2 x:14965965-14966201 + TAC-T-------------AATATCTAACTA----------------A-------A--------A------------------TCTAAAGTCTATGT-T--------G-----------------------CT----------------------------------------------AATC---------------------------------AGG-AATT-----------------------------------------CAATTTATT-----------------------------------------------------------ATATACA----------AA--------TT-----TGATTTTGACTCGGATTGTTATACCCGTTACTC---GT--------AAATTAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAT--------AACCATATAAAGTATAT---ATATTCTTGATAAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTTCGTCCGTT----TGAA
droSec2 scaffold_40:203697-203942 + TGA-A--C----------ATTTT----CTAAATTTTCA------AAAAGAATT-------------GTGTGCC--------------------TAA-ACCGTT---T-----------------TAT------------------------------------------------------------------TCGTGTC----------------------------------------G-------CTT-------------T------TAGTAATACTGAAAT-----------------------------TTA---------------------------------------GCTA-----TGT-----------ACTTTTATACCAGTTACTC---GT--------AGAGTAAAAGGGTATACTAGATTCGTTAAAA-------ATCATGTAACAGGCAGAAGGAAGCGTTTTCGACAATATTAAGTGTAA---ATATTCGTGATCAGAATCAGTAGCCGAGTCGATCTGGCCATGTCTGTCTGTCCGAATGAC--------
droYak3 3R:9156424-9156656 - TGT-A--G------CACTCATGTC-AGCTC---------------A-----------------------------------ATCTGAAGT----------------G-------------------------------------------------------------------------------------------------------------------------------------------AATTTCGAATTGAAGCTGC------AG------------TTTAC--------------AGCT---TACA--------------------------TCAACTGT-A--------GG-----TAT-----------ATTTTTATACCCGTTACTC---GT--------AGAGTAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATAT---ATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCTGTCCGT-------------
droEre2 scaffold_4929:22509549-22509788 + TAT-ATATTCTTAATTTC------------------------------------------------TCTCAAC--------------------CTTT-------TTAG---------------------------------------------AATAATAAA-------TT-----------------------------CTTTTAGAATAATATCCT---------------TAAAAC--------------------------------------------------------------------------TATTTTAC-----------------A----------AA------TATT--------------------TTATTCTCTCCGTTACTC---GT--------AGAGTAAAACGGTATACTAGATTCGTTGAAA-------AGTATGTAACAAGCAGAAGGAAGCGTTTCCGACCATGTAAAGTATAT---ATATTCTTGATCAGGGTCAATAGCCGAGTCGAACTGGCCATGTCCGTCTGTCCGTATGAA--------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGG-C-------------AGCGT----CTAAATGTGCC------CAA-------C--------GTCTTGCGTC--------------------TGTT-------TTGG---------------------------------------------ATCATT--------------------------------------------------------AGG-TATGTA---------------G-------CTT-------------A------AA------------ATTAC--------------ACAT---CACACAAGCAATTTATA--------------------------------------ATT------------TTACTTGACCCATTAAAA---AT--------GGGTAAGAGGGGTATTATGTATTTGTCCAAA-------TGTATGGAACAGGCAGAAGGAAGCATATCCAATCCTATAAATTATAT---AAATTCTTGATCACCATCAATAGCCGACTCGATCTAGCCATGTCCGTCCGTATGTGTGAA--------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................C--------GTCTTGCGTC--------------------TGTT-------TTGG---------------------------------------------ATCATT--------------------------------------------------------A................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAA-------TGTATGGAACAGGCAGAAGG..................................................................................................2521.002002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTAAAA---AT--------GGGTAAGAGGG.................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
...............................................................GTCTTGCGTC--------------------TGTT-------TTGG---------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..................AGCGT----CTAAATGTGCC------CAA-------C--------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------TGTATGGAACAGGCAGAAGGAAG...............................................................................................26100.202001000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TGTATGGAACAGGCAGAAGGAAGC..............................................................................................25100.101000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACAGGCAGAAGGAAG...............................................................................................21110.091000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA-------TGTATGGAACAGGCAGA.....................................................................................................21110.091001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGGCAGAAGGAAGC..............................................................................................19110.091000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGACTCGATCTAGCCATGTC........................22130.081000000010000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCACCATCAATAGCCG..........................................23140.071000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGATCTAGCCATGTCCGT.....................21150.071000001000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGT.....................19200.051000000000000000000000000000000100000000000000000000000000000000
droMoj3
ATT-C-------------AGCTT----------------------------------------T--TGGCGCCCAATATCAATC---------TGG-TCGATT---T-----------------CAT--------------------------TC------------------------------------------------------------CGG-TAGGTT---------------G-----CACTG-------------A------AA------------ATTAT--------------ACATATACATA----------------TATATGTA----------TA--------TA-----TGA-----------ATTTTTATACCCTGAACCCATTGAAAAT----GGGAAATCAGGGTATAATGGTTTTGT-GAAA-------AGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATAT---ATATTCTTGATCAGCACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCGT-------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCACGACGAGCTGA.........................................21200.153300000
................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAT----GGGAAATCAGGG................................................................................................................................................20200.102200000
................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAT----GGGAAATCAGGGTA..............................................................................................................................................22200.102200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATATAGCCCTGTCCGTCT...................23200.051000001
droGri2
AAA-A-------------ATGCC---------------------CT-------AC--------TTATTAA-------------------------------TT---G-----------------CAATTC-----AG-------------------------TATTATTGAT-----------------------------------------------GATTCA---------------G-------CTC-------------A------AT------------ATT------------------CT-----------------------TGCATACT----------AT-------------------------------GATAATAGCCTG-ACCCATTAAAAAT----G--GAAAAATGGTATAATGAAGTGGTGCAAA-------AGTATGTAACAGGCAGAAGCAAGCATCTCCGACCCCATAAAGCATAT---AGATTCTTGATCAACATCATCAGCCGAGTTAATTTAACTACATCCATTTGT-----------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAC-G--T-------------------TTATATG----CATA-----------ACTCGACTGTT--TTTTGTC--------------------CGAT----TT---TG---------------------------------------------ATC------------------------------------------------------AAATTTGG-TATTTT---------------G-------CTA-------------T------AT------------ATTA-GTATTAAATTTAAGTGTG---------------------------------------------------------------------------------CC------AAATTGGAAATGGTTAGGGTGAAATGGTATATTAAAGTCGACAAAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATAT---ATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGTCCGT-------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAAATGGTTAGGGTGAA....................................................................................................................................................2111.00100010
..................................................................................................................................................................................................................................................................................................................TG---------------------------------------------------------------------------------CC------AAATTGGAAATGGTTAGGGTG......................................................................................................................................................2511.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAGTCGATCTAGCCATGTCCGT.....................26200.30600060
..........................................................................................................TG---------------------------------------------ATC------------------------------------------------------AAATTTGG-TATTTT---------------G-------CTA-------------T------A........................................................................................................................................................................................................................................................................................................2550.20100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------TGTATGTAACAGGCAGAAGGAA................................................................................................25200.20400040
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCC.......................18200.10220000
.............................................................GTT--TTTTGTC--------------------CGAT----TT---TG---------------------------------------------ATC------------------------------------------------------AAA...................................................................................................................................................................................................................................................................................................................................................................24200.10200020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAACCGAGTCGATCTAGCCAT...........................25200.10202000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTATATTAAAGTCGACAAAA-------T.....................................................................................................................24160.06100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAAAGTCGACAAAA-------TGTATGT...............................................................................................................24170.06100010
..............................................................................................................................................................................................................................................................................................TTA-GTATTAAATTTAAGTGTG---------------------------------------------------------------------------------...................................................................................................................................................................................21200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAAGTATAT---ATATTCTTGATCAGG.....................................................28200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTC........................20200.05101000
....G--T-------------------TTATATG----CATA-----------ACTCGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
dp5
GCA-A---------------ACT----CTAAAGG----CGCGCC---------GC--------GTTTTGTATT--------------------GGT-----TTA--TG----------A-----------------------------------GA------TATTATCATC--------------------------------------------------------------------G-----------------------------------------------------------------TT---TAA--------------------A------TCAAATCTCT--------TT-----GCA-----------CTTTTTATACTCGATACTC---AA-AA-----AGAGTATAGGGGTATATTAGATTAGCGGGGAAAGTGGATTTGTGTAACACCCAGAAGGAAGCGTTTCCGATCCCATAAAGTGTAT---ATATTCTCGATCATCATCAATAGACGAGTTAATATAGCCATGCCCGTCCGT-----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................CGATACTC---AA-AA-----AGAGTATAGGG.................................................................................................................................................23101.301301210000000
........................................................................................................................................................................................................................................................................................................................................................................................................GATACTC---AA-AA-----AGAGTATAGGG.................................................................................................................................................22120.1720200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGATACTC---AA-AA-----AGAGTATAGG..................................................................................................................................................22130.1520200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACCCAGAAGGAAGCGTTTCC........................................................................................24200.1020100000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAAGCGTTTCCGATC....................................................................................21120.0810100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTCCGATCCCATAAAGT...........................................................................20200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACCCAGAAGGAAGCGTTTC.........................................................................................24200.0510000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCCAGAAGGAAGCGTTTCC........................................................................................22200.0510000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACCCAGAAGGAAGCGTTTC.........................................................................................23200.0510100000000
droPer2
GCT-T--T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCTGGTCATTGTTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGGCATAAGTCAA-T---G--------TG-----TTT-----------GTTTTTATACCCGATACTC---AA-AA-----TGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATAT---ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTG----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................2398.89800780002
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................2094.56410400001
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGC........................................................................................................................................................................................................................................................................................................................................................................................2193.11284204000
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................18203.10626011000
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................19202.40481431003
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGC.......................................................................................................................................................................................................................................................................................................................................................................................................20202.35472405000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCT.......................................................................................................................................................................................................................................................................................................................................................................................2292.33210200001
.................T---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................22201.60320320000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTA......................................................................................................................................................................................................................................................................................................................................................................................2391.56140140000
.............................................................................................................................................................................................TGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGG.........................................................................................................................................................................................................................................25121.25150141000
.............................................................................................................................................................................TTGCTGGTCATTGTTTTGCTGTATG..................................................................................................................................................................................................................................................................................................................................................................................2591.22110100001
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTGT.....................................................................................................................................................................................................................................................................................................................................................................................2491.1110090001
...........................................................................................................................................................................................TTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTT.............................................................................................................................................................................................................................................23121.08130130000
..........................................................................................................................................................................................TTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTT.............................................................................................................................................................................................................................................24121.08130111001
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................23201.05214150002
..............................................................................................................................................................................TGCTGGTCATTGTTTTGCTGTATG..................................................................................................................................................................................................................................................................................................................................................................................2491.009071001
.............................................................................................................................................................................................TGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGGC........................................................................................................................................................................................................................................26121.00120120000
...........TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................23120.9211380000
.................T---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................21200.90181710000
........................................................................................................................................................................TGCTGTTGCTGGTCATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................2390.898071000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................24200.80160140002
...........TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................25120.759081000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................21200.70140140000
.......T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................24120.678260000
.................................................................................................................................................................................TGGTCATTGTTTTGCTGTATGCC----------------------------------------G-------T...............................................................................................................................................................................................................................................................................................................................25100.606060000
...........TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................22120.587070000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTGTATG..................................................................................................................................................................................................................................................................................................................................................................................2790.565040001
........................................................................................................................................................................................TGTTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTT.............................................................................................................................................................................................................................................26100.505050000
.............................................................................................................................................................................................TGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGGCA.......................................................................................................................................................................................................................................27120.506060000
..............................................................................................................................................................................TGCTGGTCATTGTTTTGCTGTATGC.................................................................................................................................................................................................................................................................................................................................................................................2590.444031000
........................................................................................................................................................................TGCTGTTGCTGGTCATTGTTTTGC........................................................................................................................................................................................................................................................................................................................................................................................2490.444031000
.......T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................26120.425050000
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCTGG....................................................................................................................................................................................................................................................................................................................................................................................................23200.357070000
.............................................................................................................................................................................TTGCTGGTCATTGTTTTGCTGTA....................................................................................................................................................................................................................................................................................................................................................................................2390.333030000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGA........................................................................................................................................................................................................................................................................................................................................................................................2190.333021000
.......T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................23120.334040000
............................................................................................................................................................................GTTGCTGGTCATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................1990.333030000
..T-T--T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................25120.334040000
...........TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCT............................................................................................................................................................................................................................................................................................................................................................................................................24120.334400000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................19200.306150000
........................................................................C--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGC.......................................................................................................................................................................................................................................................................................................................................................................................................19200.306051000
........................................................................C--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................20200.255300002
.......T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCT............................................................................................................................................................................................................................................................................................................................................................................................................25120.253120000
...........TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................21120.253030000
.................T---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................20200.255140000
............................................................................................................................................................................................TTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTT.............................................................................................................................................................................................................................................22120.253030000
..........................................................................................................................................................................................TTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAG...............................................................................................................................................................................................................................................22120.253030000
............................................................................................................................................................................................TTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGG.........................................................................................................................................................................................................................................26120.253030000
..............................................................................................................................................................................TGCTGGTCATTGTTTTGCTGTATGCC----------------------------------------........................................................................................................................................................................................................................................................................................................................................2690.222020000
..........................................................................................................................................................................CTGTTGCTGGTCATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................2190.222020000
.............................................................................................................................................................................TTGCTGGTCATTGTTTTGCTGTATGC.................................................................................................................................................................................................................................................................................................................................................................................2690.222110000
..............................................................................................................................................................................TGCTGGTCATTGTTTTGCTGTATGCC----------------------------------------G-------T...............................................................................................................................................................................................................................................................................................................................2890.222020000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTGTAT...................................................................................................................................................................................................................................................................................................................................................................................2690.222020000
..........................................................................................................................................................................CTGTTGCTGGTCATTGTTTTGC........................................................................................................................................................................................................................................................................................................................................................................................2290.222020000
.............................................................................................................................................................................TTGCTGGTCATTGTTTTGCTGTATGCC----------------------------------------........................................................................................................................................................................................................................................................................................................................................2790.222020000
............................................................................................................................................................................GTTGCTGGTCATTGTTTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................2290.222020000
........................................................................C--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................18200.204040000
....................................................................................................................................................................................TCATTGTTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------A..................................................................................................................................................................................................................................................25100.202020000
....................................................................................................................................................................................TCATTGTTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAG...............................................................................................................................................................................................................................................28100.202020000
................................................................................................................................................................................CTGGTCATTGTTTTGCTGTATGCC----------------------------------------G-------................................................................................................................................................................................................................................................................................................................................25100.202020000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCT............................................................................................................................................................................................................................................................................................................................................................................................................20200.204040000
........................................................................................................................................................................................TGTTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGT..............................................................................................................................................................................................................................................25100.202020000
.................................................................................................................................................................................TGGTCATTGTTTTGCTGTATGCC----------------------------------------G-------TT..............................................................................................................................................................................................................................................................................................................................26100.202020000
..............................................................................................................................................................................................GCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGGC........................................................................................................................................................................................................................................25120.172020000
..............................................................................................................................................................................................GCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGG.........................................................................................................................................................................................................................................24120.172020000
...........TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................26120.172020000
...........................................................................................................................................................................................TTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGGCA.......................................................................................................................................................................................................................................29120.172020000
...........................................................................................................................................................................................TTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGGC........................................................................................................................................................................................................................................28120.172020000
............AGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................24190.163030000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................22200.153102000
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................21200.153120000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCCAGAAGGAATCGTTTCCGACC....................................................................................28200.153030000
................GT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................23200.153030000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTA.........................................................................................................................................................................................................................................................................................................................................................................................20200.153030000
................GT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................21200.153030000
..............................................................................................................................................................................TGCTGGTCATTGTTTTGCTGTAT...................................................................................................................................................................................................................................................................................................................................................................................2390.111010000
............................................................................................................................................................................GTTGCTGGTCATTGTTTTGT........................................................................................................................................................................................................................................................................................................................................................................................2090.111010000
...............................................................................................................................................................................GCTGGTCATTGTTTTGCTGTATGCC----------------------------------------G-------T...............................................................................................................................................................................................................................................................................................................................2790.111010000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTGTAAAA.................................................................................................................................................................................................................................................................................................................................................................................2890.111010000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTGTA....................................................................................................................................................................................................................................................................................................................................................................................2590.111010000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCA.......................................................................................................................................................................................................................................................................................................................................................................................2290.111010000
........................................................................................................................................................................TGCTGTTGCTGGTCATTGTTTTGTGA......................................................................................................................................................................................................................................................................................................................................................................................2690.111010000
..............................................................................................................................................................................TGCTGGTCATTGTTTTGCTGTA....................................................................................................................................................................................................................................................................................................................................................................................2290.111010000
............................................................................................................................................................................GTTGCTGGTCATTGTTTTGC........................................................................................................................................................................................................................................................................................................................................................................................2090.111010000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTGG.....................................................................................................................................................................................................................................................................................................................................................................................2490.111100000
.............................................................................................................................................................................TTGCTGGTCATTGTTTTGCT.......................................................................................................................................................................................................................................................................................................................................................................................2090.111100000
.............................................................................................................................................................................TTGCTGGTCATTGTTTTGCTGTAT...................................................................................................................................................................................................................................................................................................................................................................................2490.111010000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................2490.111010000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCAA......................................................................................................................................................................................................................................................................................................................................................................................2390.111001000
........................................................................................................................................................................TGCTGTTGCTGGTCATTGTTTTGTAA......................................................................................................................................................................................................................................................................................................................................................................................2690.111010000
............................................................................................................................................................................GTTGCTGGTCATTGTTTTGCTGT.....................................................................................................................................................................................................................................................................................................................................................................................2390.111010000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTAC.....................................................................................................................................................................................................................................................................................................................................................................................2490.111010000
........................................................................................................................................................................TGCTGTTGCTGGTCATTGTTTTGT........................................................................................................................................................................................................................................................................................................................................................................................2490.111010000
............................................................................................................................................................................GTTGCTGGTCATTGTTTTGCTGTATG..................................................................................................................................................................................................................................................................................................................................................................................2690.111010000
............................................................................................................................................................................GTTGCTGGTCATTGTTTTGCTGTATGC.................................................................................................................................................................................................................................................................................................................................................................................2790.111010000
............AGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................22190.112110000
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCTGGTCAT................................................................................................................................................................................................................................................................................................................................................................................................27190.112020000
................GT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................20200.102020000
.....................................................................CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTAAA......................................................................................................................................................................................................................................................................................................................................................................................................21200.102020000
....................................................................................................................................................................................TCATTGTTTTGCTGTATGCC----------------------------------------G-------TT..............................................................................................................................................................................................................................................................................................................................23100.101010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCCATGTCT.......................20200.102020000
...................................................................................................................................................................................GTCATTGTTTTGCTGTATGCC----------------------------------------G-------TT..............................................................................................................................................................................................................................................................................................................................24100.101010000
................GT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................22200.102020000
................GT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTA...........................................................................................................................................................................................................................................................................................................................................................................................................20200.102020000
...................................................................................................................................................................................GTCATTGTTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------A..................................................................................................................................................................................................................................................26100.101010000
........................................................................................................................................................................................TGTTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTT............................................................................................................................................................................................................................................27100.101010000
...................................................................................................................................................................................GTCATTGTTTTGCTGTATGC.................................................................................................................................................................................................................................................................................................................................................................................20100.101010000
.................................................................................................................................................................................TGGTCATTGTTTTGCTGTATGC.................................................................................................................................................................................................................................................................................................................................................................................22100.101010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGC.......................................................................................................................................................................................................................................................................................................................................................................................................25200.102020000
.................................................................................................................................................................................TGGTCATTGTTTTGCTGTATGCC----------------------------------------G-------................................................................................................................................................................................................................................................................................................................................24100.101010000
........................................................................................................................................................................................TGTTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAG...............................................................................................................................................................................................................................................24100.101010000
.................T---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCTGG....................................................................................................................................................................................................................................................................................................................................................................................................26200.102020000
....................................................................................................................................................................................TCATTGTTTTGCTGTATGCC----------------------------------------G-------T...............................................................................................................................................................................................................................................................................................................................22100.101010000
.................T---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................19200.102020000
................................................................................................................................................................................CTGGTCATTGTTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------...................................................................................................................................................................................................................................................28100.101010000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTAA.....................................................................................................................................................................................................................................................................................................................................................................................24100.101010000
....T--T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................21120.081010000
...........TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGA.............................................................................................................................................................................................................................................................................................................................................................................................................23120.081010000
...........................................................................................................................................................................................TTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTC...........................................................................................................................................................................................................................................25120.081010000
.......T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGT...................................................................................................................................................................................................................................................................................................................................................................................................................18120.081010000
..........................................................................................................................................................................................TTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGT..............................................................................................................................................................................................................................................23120.081010000
.................................................................................................................................................................................................GTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCG..........................................................................................................................................................................................................................................20120.081010000
...........TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCC............................................................................................................................................................................................................................................................................................................................................................................................................24120.081100000
..........................................................................................................................................................................................TTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTA............................................................................................................................................................................................................................................25120.081010000
..............................................................................................................................................................................................GCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTC...........................................................................................................................................................................................................................................22120.081010000
..........................................................................................................................................................................................TTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTC.............................................................................................................................................................................................................................................24120.081010000
............................................................................................................................................................................................TTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGGC........................................................................................................................................................................................................................................27120.081010000
..........................................................................................................................................................................................TTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTT............................................................................................................................................................................................................................................25120.081010000
...........TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTT...........................................................................................................................................................................................................................................................................................................................................................................................................25120.081010000
..........................................................................................................................................................................................TTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTG............................................................................................................................................................................................................................................25120.081010000
....T--T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCT............................................................................................................................................................................................................................................................................................................................................................................................................26120.081010000
.......T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................27120.081010000
.............................................................................................................................................................................................TGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTC...........................................................................................................................................................................................................................................23120.081010000
...........................................................................................................................................................................................TTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTT............................................................................................................................................................................................................................................24120.081010000
..T-T--T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................24120.081010000
...........TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCA............................................................................................................................................................................................................................................................................................................................................................................................................24120.081010000
............................................................................................................................................................................................TTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTC...........................................................................................................................................................................................................................................24120.081010000
..........................................................................................................................................................................................TTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGG.........................................................................................................................................................................................................................................28120.081010000
..........................................................................................................................................................................................TTTTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------A..................................................................................................................................................................................................................................................19120.081010000
....T--T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................24120.081010000
..T-T--T---TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................26120.081010000
............................................................................................................................................................................................TTGCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCG..........................................................................................................................................................................................................................................25120.081010000
..............................................................................................................................................................................................GCTGTATGCC----------------------------------------G-------TTT--------------------------------------------------------------------------ATAGTTTCGGCA.......................................................................................................................................................................................................................................26120.081010000
...........TAGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTT..................................................................................................................................................................................................................................................................................................................................................................................................................18120.081010000
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCTGGTCATTG..............................................................................................................................................................................................................................................................................................................................................................................................29180.061000001
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCTGGTCA.................................................................................................................................................................................................................................................................................................................................................................................................26190.051010000
.............GCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................20190.051010000
........................................................................C--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCTGGTC..................................................................................................................................................................................................................................................................................................................................................................................................24190.051010000
.............GCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................23190.051010000
............AGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................20190.051010000
........................................................................C--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCTGGTCATT...............................................................................................................................................................................................................................................................................................................................................................................................27190.051010000
............AGCTGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................25190.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTA.........................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
......................................................................GTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGC.......................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCTGG....................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
................GT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTA........................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTA...........................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGA.............................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCA............................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTA........................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTA........................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTT........................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGA..........................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTT........................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTGA.......................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...............TGT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTT...........................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGGTATATTAGATTTGTGGTAAAAG..........................................................................................................................28200.051000001
.......................................................................TC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTAA.......................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
......................................................................GTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.....................................................................CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAATCGTTTCCGACCCCA.................................................................................24200.051010000
................GT---------------------------------------------------CGTC--------------------------------------------------------A-----AA-------------------------CGTTGTTGCTGTTT........................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000
...........................................................................................................................................................................TGTTGCTGGTCATTGTTTTGCTT......................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
droAna3
AAT-G--TTTTTATCTTT------------------------------------------------GCGCATT--------------------TATT-------TTAG---------------------------------------------ATTAATACA-------TG--------------------------------------------------T---------------------TT-ATTA----TATGAT--------------------------------------------TGAT---CGGATATGCCAT---------------------------A------GCTT-----TGT-----------TTTTTTATACCCT-----T---GC--------A------GAGGGTATTATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT---ATATTCTTGATCAAGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTC--------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGTGAAGGAGACATCTCC........................................................................................21200.357070000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGGAGACAT............................................................................................25200.306600000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTTGGTCAAA-------AGTGTGCAACGCA.........................................................................................................28200.102002000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTCAAA-------AGTGTGCAACGCA.........................................................................................................23200.102000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGAGCATGTCCGTCTGTC................22200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAAGATCACCTCCTGAC........................................25200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATAT---ATATTCTTGATCAA......................................................21200.051100000
.........................................................................................................................................................................................................................................................A----TATGAT--------------------------------------------TGAT---CGGATATG.........................................................................................................................................................................................................................................................19200.051000010
droBip1
TGC-C--C-----------------AGCTGAATGTACC------AAA-------A--------GTGCT--------------------------------------G-----------------------CTTCCCTGGGGGTTTTTAACCG---------------------------------------------------------TAATATTAAAA---------------TATCCA----T-----------------------------------------------------------------------------TTATA--------------------------------------TTC-----------ATATTTATACCCT-----T---GC--------A------GAGGGTATTATAATTTTGTCCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTC--------SizeHit CountTotal NormTotal
No Reads
droKik1
AAT-G--T---------------------------------------------------------TATGTGTA--------------------TGT-----TTT--CA----------GAATTTTAT------------------------------------------------------------------TTATGCTATTTATAAATAATATACA---------------TATAACAT----T-----------------------------------------------------------------------------TTATATTTTC--------------------------TTTT---ATT-----------TTTATTATACCAT-----T---G----------------CAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGT-------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCG-T-------------TTTTT---------------------------------------------------------------------------------TTAAATTTTT---------------------------------------------------------------------------------------------------------TTTTTA---------------A-------CTT-------------C------AA------------ATT------------------TT-----------------------TTAATGGA----------AA--------AA-----TAA-----------TTTTTTATACCCT-----T---GC--------AGAGCA-AAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCTATAAAGTATAT---ATATTCTTAATCAGCATCACGATCTGAATCGAAA--------TCCGTCTGTACGTCTGTC--------SizeHit CountTotal NormTotal
No Reads
droEle1
CAACG--TTTTTCGCTTT----------------------------------------------------------------------------GGT----TT---G-----------------------CATCCATTGGGGTTTTTA------GT------TATTT--------------------------------------TAAATA---TTAAAA-------------TATAACAA----T-----------------------------------------------------------------------------TTTTA------ATATG----------GTG----------TATTT------GAC---TGTTTTTATACCCA-----T---G--------------CAGAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACATTTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGCATCACTCGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGAC--------SizeHit CountTotal NormTotal
No Reads
droRho1
AGC-G--T-------------------CTAAACTTTAA------CAACAGATTG---------GTTTT--------------------------------------A-----------------------CTTCC-------TTTTCAATTAGAGCTTT--------------------------------------------------------AGG-AAATCAAATTAAATTACGACAGTTTT-CTGA----AACTAAACAGC------AG------------T-------------------------------------TT-----------------------------------------A------GAC---CATAGTTATACCCGTTACTC---GT--------AGAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTG----------SizeHit CountTotal NormTotal
No Reads
droBia1
TGG-C-------------ATAGA----CTAAAGC---T------TAT-------T--------TTTTAGTATC--------------------TAT-TCCTTT---T-----------------TAA--------------------------CCAATT--------------------------------------------------------AGG-TTT-------------------------------------------------TT-----------------GTATAAAAATTCACTGAT---CCCA--------------------------ACA----------------------TTT-----------ATAAATATACCCT-----T---GC--------A------GAATGTATAATGGTTTCAATCAGA-------AGTTTGCAACGCAGTGAAGGACACGTTTCCGACCTCATAAAGTGTAT---ATATTCTTGATCACCGTCACTCGACGAGTCGATCTAGCCATGTCCGTTTGTCCGT-------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGG-G-------------AAAAT----GTAAATG----TT--------------------------TTTTAAT--------------------CTTT-------TTAG-TTTTTTTTTG----------------------------------AACATT------------------------------------------------------G--------------------------------AACATCAAATC-------A------AA------------CTTCC--------------AAAA---CACA----------------TTAAAATA----------AA--------TT-----TAA-----------TTTTTTATACCCGTTACTC---GT--------AGAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAACAGGGAGAAGGAAGCGTTTCCGACCCCATAAAGTATAT---ATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTG----------SizeHit CountTotal NormTotal
No Reads
droEug1
TTA-C-------------AATAA----TTACATG----TGTACT---------AT--------TTTATATATA--------------------CAT-----TTT--GG----------A-----------------------------------TAAAT------TAGAAT--------------------------------------------------T------------------A-----------------------------------------------------------------T----------------CTTAA------ATGAG----------GTGTTATAAGTT-----TGT-----------ATTTTTATAACCGTTACTC---GT--------AGAGTAAAAGAGTATACTAAATTCGTTGAAA-------AGTATGTAACAGATAGAAGGAAGCGTTTGCGACCCTATAAAGTATAT---ATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGCCCGTCTGTCCGTCCGTCCGTATGAASizeHit CountTotal NormTotal
No Reads
dm3
CCC-A--C------CA------T----------------------------------------T--TCCCGCC--------------------CAT-----TTT--GC----------ACATGAAAT------------------------------------------------------------------GGATACTATCT-------------------------------------------------------------------------------------------------------------------------AGA-TTGCCACACA----------AA--------TA-----TTA-----------ATTTTTATACCCGTTACTC---GT--------AGAGTAAAAGGGTATACTAGATTCTTTGAAA-------AGTATGTAACACGCAAAAGGAAGCGTTTTCGACTATATAAAGTATATATTATATTCTTGATCAGGATTAATAGCCGAATCGATCTAGCCATGTCTGTCTGT-----------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAGCCGAATCGATCTAGCCATG..........................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGCCGAATCGATCTAGCCATG..........................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-------AGTATGTAACACGCAAAAGGA.................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AGTATGTAACACGCAAAAGGAAGCG.............................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATTAATAGCCGA.........................................2163.332000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000000013000000000000000000000000000000000000000001000000000000010100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATTAATAGC............................................2153.20160000000000000000000000000000000000000000001000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000001400010000000000000000000000000020000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGCCGAATCGATCTAGCCATGTC........................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATTAATAGCCGAATCGA....................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGCCGAATCGATCTAGCCAT...........................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATTAATAGCCGA.........................................2452.60130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000005000000000000000000000000000000000000000000000000100000000000000000103200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAATCGATCTAGCCATGTC........................2432.3370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000102010000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAAAGGAAGCGTTTTCGACTA...................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGACTATATAAAGTATATATTA...................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGCCGAATCGATCTAGC..............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCAAAAGGAAGCGTTTTCGACTATA.................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATTAATAGCCGAATCGAT...................................2622.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAA-------AGTATGTAACACGCAAAAGGA.................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AGTATGTAACACGCAAAAGGAAGC..............................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGATCTAGCCATGTCTGTCTG..................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................C---GT--------AGAGTAAAAGGGTATACT..........................................................................................................................................21201.05210000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100400100000000000000000000000000000000000000000000000000000000000000000110200010000000000000000000000100000000000000000000000000050000000000000000000000000300000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAGCCGAATCGATCTAGT..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAGCCGAATCGATCT.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTATATAAAGTATATATTATATT...............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATATAAAGTATATATTATATTC..............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTATATTCTTGATCAGGAT...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATTAATAGCCGAATC......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATTAATAGC............................................2531.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGATCTAGCCATGTCTGT.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGAAGCGTTTTCGACTATATAAAG............................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGACTATATAAAGTATATATTATAA................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACACGCAAAAGGAAGCG.............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACACGCAAAAGGAAG...............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATTAATAGCC...........................................2341.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACGCAAAAGGAAGCGT............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTGAAA-------AGTATGTAACACGCAAAA....................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATTAATAGCCGAATCGATC..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATTAATAGC............................................2051.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................A--------TA-----TTA-----------ATTTTTATACCCGTT.............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAGCCGAATCGATCTAGCCA............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTTCGACTATATAAAGTATA........................................................................2531.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACACGCAAAAGGAAGCGTT...........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AGTATGTAACACGCAAAAGGAAG...............................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAATCGATCTAGCCATGTCT.......................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAATCGATCTAGCCATGTCTGTC....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
TAC-T-------------AATATCTAACTA----------------A-------A--------A------------------TCTAAAGTCTATGT-T--------G-----------------------CT----------------------------------------------AATC---------------------------------AGG-AATT-----------------------------------------CAATTTATT-----------------------------------------------------------ATATACA----------AA--------TT-----TGATTTTGACTCGGATTGTTATACCCGTTACTC---GT--------AAATTAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAT--------AACCATATAAAGTATAT---ATATTCTTGATAAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTTCGTCCGTT----TGAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATAAGGATCAATAGCCGAGT.......................................2644.251700000046520000000
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTTCGTCCGTT----....2112.00200000000000002000
................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGA...............................................................................................................................25201.9539000000320007000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGAAA-------AG....................................................................................................................29201.95390000002019000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTGAAA-------AG....................................................................................................................24201.5030000000030000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGGCAGAAGGAT--------........................................................................................2541.50600000000303000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGGCAGA.....................................................................................................20201.4529000000000128000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATAAGGATCAATAGCCGAGT.......................................2541.25500000013001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATCAATAGCCGAGTCGATC..................................2351.20600000023100000000
........................TAACTA----------------A-------A--------A------------------TCTAAAGTCTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATAAGGATCAATAGCCGAGT.......................................2831.00300000011010000000
..............................................................................................................................................................................................................................................................................................................................................................................TGATTTTGACTCGGATTGTTAT....................................................................................................................................................................................2211.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGCCATGTCCG......................29200.9519000001900000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGTCT...................25200.9519002000010115000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTGAAA-------AGTA..................................................................................................................26200.8517000000017000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCAGA.....................................................................................................27200.851700290000002004000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATCAATAGCCGAGTCGAT...................................2250.80400000011020000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAA..............................................................................................................................24200.5511000000110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGGCA.......................................................................................................24200.5511000000000000110000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT---ATATTCTTGATAAGGATCAA................................................2660.50300120000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGTC....................24200.501000000001008010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGGCAGAAGGAT--------AT......................................................................................2720.50100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAAA-------......................................................................................................................25200.45900000061002000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCAGAA....................................................................................................28200.45900010010600010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCAG......................................................................................................26200.45900010005001002000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCA.......................................................................................................25200.40800000080000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGGCAGAAGG..................................................................................................23200.40800020060000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGGCAGA.....................................................................................................26200.40800000000070001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATCAATAGCCGAGTCGATCT.................................2450.40200000010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAA-------AGTATGTAACAGGCAGAAGGA.................................................................................................28200.40800000080000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGTTCGTCCG..........2130.33110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGGC........................................................................................................23200.30600000000030030000
................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGAAA-------A.....................................................................................................................28200.30600000050001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTGAAA-------AG....................................................................................................................26200.30600000000006000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAT---ATATTCTTGATAAGGA....................................................2470.29200010000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGAAA-------AGT...................................................................................................................21200.25503000000002000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAAA-------......................................................................................................................26200.25500000050000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGGATCAATAGCCGAGTCGATC..................................2740.25100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTGAAA-------AGTA..................................................................................................................24200.25500000000500000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTGAAA-------......................................................................................................................24200.20400000040000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAAA-------AG....................................................................................................................28200.20400000004000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGATCAATAGCCGAGTCGAT...................................2350.20100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGATCAATAGCCGAGTCGATC..................................2450.20100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT---ATATTCTTGATAAGGATCAAT...............................................2760.17100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT---ATATTCTTGATAAGGATCA.................................................2560.17100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATAT---ATATTCTTGATAAGGA....................................................2660.17100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATAAGGATCAAT...............................................16130.15200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGAAA-------AGT...................................................................................................................26200.15300000012000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGA.................................................................................................19200.15300000000300000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGT.....................23200.15300000000003000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGTCTG..................26200.15300000000003000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTGAAA-------AGT...................................................................................................................27200.15300000000003000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAA-------AGTATGTAACAGGCAGA.....................................................................................................24200.15300000003000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGA.....................................................................................................16200.15300000000003000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGAA..............................................................................................................................22200.15300000003000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATG................................................................................................................16200.15300000000003000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAAA-------AGTATGTAACAGGCAGA.....................................................................................................25200.15300000000300000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT---ATATTCTTGATA........................................................18140.14200000002000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT---ATATTCTTGATAAGGATCAAT...............................................2580.13100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATGTCCGTCTGTTCGTT............2180.13100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT---ATATTCTTGATAAGGATCAATAGC............................................2780.13100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---ATATTCTTGATAAGGATCAATAGC............................................2580.13100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGGCAGAAGGA.................................................................................................30200.10200000020000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-------AGTATGTAACAGGCAGAAGGA.................................................................................................27200.10200000002000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGCCATGTCCGT.....................25200.10200000000001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTGAAA-------AG....................................................................................................................21200.10200000000002000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGCCATGTCCGTC....................26200.10200000000020000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCC.......................................................................................................25200.10200000000000020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTGAAA-------A.....................................................................................................................23200.10200000000200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCAGAAGGA.................................................................................................31200.10200000020000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTGGCCATGTCCGTC....................27200.10200000000200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AGTATGTAACAGGCAGAAGGA.................................................................................................23200.10200000002000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAA..............................................................................................................................25200.10200000000000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCT.................................19200.10200000000002000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATAAGGATCAAT...............................................18120.08100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT---ATATTCTTGATAAGGATCAC................................................24130.08100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGA...............................................................................................................................21200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAAA-------AGT...................................................................................................................28200.05100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTGGCCATGTCCGTCA...................28200.05100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATCTG................................21200.05110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAG..........................................................................................................22200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGAAA-------AGTA..................................................................................................................31200.05100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGGCAGAAG...................................................................................................22200.05100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGA.................................................................................................20200.05100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCT.................................17200.05100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGCC.............................22200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGG.........................................................................................................22200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATCTGGCCATGTC........................25200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGCC.............................17200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTG................................15200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTGGC..............................20200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTT.................................................................................................................................21200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGCCATGT.........................26200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTGGCCATGTCCGT.....................27200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGTCTGT.................27200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGG...............................20200.05100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCAGAC....................................................................................................28200.05100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AGTATGTAACAGGCAGAAGGA.................................................................................................22200.05100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGATCTGGC..............................26200.05100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCAGAAG...................................................................................................29200.05100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGTTGAAA-------AGTATG................................................................................................................23200.05100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAAA-------AGTATGTAACAGGCAGAAGGA.................................................................................................29200.05100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGAAA-------AGTA..................................................................................................................22200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTGGCCATGTC........................17200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTGGCCATG..........................16200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCG......................22200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCCGAGTCGATCTGGCC.............................25200.05100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTGGCCATGTCCGTCTG..................30200.05100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAA-------AGTATGTAACAGGCAGAAG...................................................................................................26200.05100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGT..................................................................................................................................20200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGA....................................20200.05100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGT..................................................................................................................................18200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGA...............................................................................................................................23200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTAGATTCGTTGAAA-------AGTA..................................................................................................................25200.05100000001000000000
droSec2
TGA-A--C----------ATTTT----CTAAATTTTCA------AAAAGAATT-------------GTGTGCC--------------------TAA-ACCGTT---T-----------------TAT------------------------------------------------------------------TCGTGTC----------------------------------------G-------CTT-------------T------TAGTAATACTGAAAT-----------------------------TTA---------------------------------------GCTA-----TGT-----------ACTTTTATACCAGTTACTC---GT--------AGAGTAAAAGGGTATACTAGATTCGTTAAAA-------ATCATGTAACAGGCAGAAGGAAGCGTTTTCGACAATATTAAGTGTAA---ATATTCGTGATCAGAATCAGTAGCCGAGTCGATCTGGCCATGTCTGTCTGTCCGAATGAC--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGCCATGTCTG......................2430.3311000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGT............................................................................................20200.0510100
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGT..................................................................................................................................21200.0510100
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTT.................................................................................................................................21200.0511000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTT..........................................................................................24200.0510001
droYak3
TGT-A--G------CACTCATGTC-AGCTC---------------A-----------------------------------ATCTGAAGT----------------G-------------------------------------------------------------------------------------------------------------------------------------------AATTTCGAATTGAAGCTGC------AG------------TTTAC--------------AGCT---TACA--------------------------TCAACTGT-A--------GG-----TAT-----------ATTTTTATACCCGTTACTC---GT--------AGAGTAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATAT---ATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCTGTCCGT-------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATTTGG...............................26200.10202000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGAT...................................27200.10202000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAA-------AGTATGTAACAGGCAGAAGG..................................................................................................27200.05100000010000
droEre2
TAT-ATATTCTTAATTTC------------------------------------------------TCTCAAC--------------------CTTT-------TTAG---------------------------------------------AATAATAAA-------TT-----------------------------CTTTTAGAATAATATCCT---------------TAAAAC--------------------------------------------------------------------------TATTTTAC-----------------A----------AA------TATT--------------------TTATTCTCTCCGTTACTC---GT--------AGAGTAAAACGGTATACTAGATTCGTTGAAA-------AGTATGTAACAAGCAGAAGGAAGCGTTTCCGACCATGTAAAGTATAT---ATATTCTTGATCAGGGTCAATAGCCGAGTCGAACTGGCCATGTCCGTCTGTCCGTATGAA--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAAGCAGA.....................................................................................................2770.4330000003
...................................................................................................................................................................................................................................................................................................................................................................................................................T--------AGAGTAAAACGGTATACTAGATTCGT..................................................................................................................................2740.2511000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAAGCAGAAGGAAGCGTT...........................................................................................2460.1710000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAAGCAGA.....................................................................................................2670.1410000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAAGCAG......................................................................................................2570.1410000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGAACTGGCCATGTCCGTCT...................28200.0510000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGAACTGGCCATGTCCGTCT...................24200.0510000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACTGGCCATGTCCGTCTGTCC...............24200.0510100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTGAAA-------AG....................................................................................................................21200.0511000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGAAA-------AGTA..................................................................................................................22200.0510000100

Generated: 05/16/2015 at 10:11 PM