ID:

dvi_3195

 Coordinate:

scaffold_12855:22331-22481 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ10580-cds]; exon [dvir_GLEANR_10494:6]; intron [Dvir\GJ10580-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron-
MINIME_DNUnknownUnknown-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTTCGCATAGACAAACGGGCATGGCTAGATGCTGATCAAGAATATATACACTTTCTGGGGTCTAAGATTCTTACTTCTGCCTTTTAACCATTTGTAGTGGGCTCACCATCGTTCTGCTTTAAAAGAAAATATATATATAGGAGTTAGTATAAAATATCATCTGTTTATATAAAATATCATCATATAATCATCTGTTTTCAGCTCAAACGGAATGCAGTTTTGGTTTCCAGAAATCGTTAACCGATCATCCA
**************************************************....(((((((...(((........)))))))..............((((.....))))..((((........))))..((((((.(((((...((........))...))))).))))))...........................)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060683
160_testes_total
 SRR060680
 9xArg_testes_total
 SRR060689
160x9_testes_total
 SRR060678
9x140_testes_total
 V047
embryo
 SRR060655
9x160_testes_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR060666
160_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
.TTCGCATAGACAAACGGGCATG.................................................................................................................................................................................................................................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................TGCTGATCAAGAATATATACACTT...................................................................................................................................................................................................... 24 0 20 1.20 24 0 4 0 16 0 2 0 2 0 0 0 0 0
..................................................................................................................................................................................................TTTTCAGCTCAAACGGAATGCAGT................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..TCGCATAGACAAACGGGCATGG................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGTTTTTCAGCTCAAACGGAATGCAGT................................. 27 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.TTCGCATAGACAAACGGGCATGGCTAG............................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCAGTTTTGGTTTCCAGAAATCGTT............. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................TGCTGATCAAGAATATATACACTTCC.................................................................................................................................................................................................... 26 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................TGCTGATCAAGAATATATACACTTT..................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 1 0
............................ATGCTGATCAAGAATATATACACTT...................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 0 1
.............................TGCTGATCAAGAATATATACACT....................................................................................................................................................................................................... 23 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...................................TCAAGAATATATACACTT...................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................TGCTGATCAAGAAGATATACACTTT..................................................................................................................................................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................CGTTCTGCTGTTCAAGAAAA.......................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................TACAGATCTAGGAGTTAGT....................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGGTTTCCTTAGATCGTTAA........... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................GCTGATCAAGAATATATACACT....................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CAAGCGTATCTGTTTGCCCGTACCGATCTACGACTAGTTCTTATATATGTGAAAGACCCCAGATTCTAAGAATGAAGACGGAAAATTGGTAAACATCACCCGAGTGGTAGCAAGACGAAATTTTCTTTTATATATATATCCTCAATCATATTTTATAGTAGACAAATATATTTTATAGTAGTATATTAGTAGACAAAAGTCGAGTTTGCCTTACGTCAAAACCAAAGGTCTTTAGCAATTGGCTAGTAGGT
**************************************************....(((((((...(((........)))))))..............((((.....))))..((((........))))..((((((.(((((...((........))...))))).))))))...........................)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M061
embryo
 SRR060688
160_ovaries_total
 SRR060689
160x9_testes_total
 SRR060679
140x9_testes_total
 V047
embryo
 SRR060678
9x140_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M047
female body
 SRR060682
9x140_0-2h_embryos_total
 SRR060673
9_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060680
 9xArg_testes_total
.....................................................................................................GAGTGGTTGCAAGAAGAGA................................................................................................................................... 19 3 13 1.08 14 8 0 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 1 0 0
................................................................................................................................................................................AGTAGTATATTAGTAGAT......................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CCGAGTGGTAGCAAGACGA..................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AGTGGTTGCAAGAAGAGAT.................................................................................................................................. 19 3 16 0.69 11 3 0 0 0 0 0 0 1 1 1 0 0 1 1 2 0 0 0 1 0
....................TTACGATCTACGACTAGTTCTTATA.............................................................................................................................................................................................................. 25 2 3 0.67 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CGATCTACGACTAGTTCTTATA.............................................................................................................................................................................................................. 22 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GATCTACGACTAGTTCTTATAT............................................................................................................................................................................................................. 22 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GAGTGGTTGCAAGAAGAGAT.................................................................................................................................. 20 3 4 0.50 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AATTCGTAAACATCACTAGAGT.................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGCCAAAACGAAAGGTCTTTCG................ 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AGTGGTTGCAAGAAGAGATT................................................................................................................................. 20 3 6 0.33 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CGAGTGGTTGCAAGAAGAGA................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ACGATCTACGACTAGTTCTTATA.............................................................................................................................................................................................................. 23 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AATTCGTAAACATCACGTGAGT.................................................................................................................................................. 22 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................AGAGTGGTTGCAAGACGAGA................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TTTTGATCTACGACTAGTTCTTATA.............................................................................................................................................................................................................. 25 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CAAGTCGAGTTTCCCTTAC..................................... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................ACGACTAGTTCTTATATATGTGAAA..................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
........................................................................................................................................................................TATCCTATAGTAGTATATT................................................................ 19 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................GTGGTAGACAAAAGTCAAGT.............................................. 20 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................ACTAGTTCTTATATATGTGAA...................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12855:22281-22531 + dvi_3195 GTT--------------CGCATAGACAAACGGGCATGGCTAG----------------ATGCTGATCAAGAATATATACACTTTCTGGGGTCTAAGATTCTTACTTCTGCCTTTTAACCATT-------TG-TAGTGGGCTCACCA--TCGTTC-TGCTTTAA-------AAGAAA--------------------------------ATATATAT------------------------------ATAGGAGTTAG-----------TA---TA---AAATATC-------------------ATC-------------------------TGTTTA----------TATAAA-ATATC-------------------------------------------------------------------------------------------------------------ATCATATAA-------------TCATCT---------------------------------------------------G-------------------------------------------------------------------------------------------T-----------------------TTTCAGCTCAAACG------GAATGCAGTT-TTGGTTTCCAGAAATCGTTAAC------------------------------CGATCATCCA
droMoj3 scaffold_42:636-890 + G------------------GACAGACAGACGGACAGGGCCAAATCAACTCAGCTCGTCGCCCTGATCAAGAATATATATACTTTGTGGGGTCTGCCACGCCTCCTTCTGCCTGTTACATACA-------TTTCAACAAAACCATTATACCCTGA-TTTCCCATTGAAAATGGGTTCAGGGTAT----------A-------AAAAATAT-------------------------------------------------------------------------TGTATA--------------------------------T----------------------GTATG--------------------------------------------------------------------------------------------------------TGTATAA--------------------------------AAATTC---------------------------------------------------GGCCTCTGACCATGAAAA---------------------------------TGTCATCGTCTT--------------------------------------------------------------TGTTG------GGGAGCGAC---TGATTTACAGAATT-----------------------------------------CGTTGA
droGri2 scaffold_14906:5241805-5241984 + GTT--------------TGCATAG---------------------AACTCGGCAAATGATGCTGGTCAAGAATTGAAATATTATAATGAGTCGAATAAGTCTCCTTCAATGCGATACAAACT-------TATA------------ATAACCT-------CT----------------------ACAATGGTCTA-------AAAAA--------AAA----------------------------------------------------------------TTCATTA--------------------------------A---------------------------------------AATC-------------------------------------------G------------------AGTATAACATT-----------------------------------------------------------T---------------------------------------------------T------AGTTATG---A---------------------------------CATAATCGT------------------------GTCCA---T-----------------------TTTCAGT---------------------------------------------------------------------------------TTCAA
droWil2 scf2_1100000004952:340549-340833 + -----------------CGGACGGACGGACGGACAGGGCTAGATCGACTCGGTTGTTGATCCTGATCAAGAATATGTATACTTTGTGGGGTCGGAGAAGCTTGCTTCTGCCTGTTACATACA-------TTTTGGCGACTTTAATATACCATTT-CACCCTAT-------GGGTGTATAGTAT----------A-------AAGAGGAA------------------------TAT--------GT-----------------------------ATA------------------------------------------------------------------TATG--------------------------------------------------------------------------------------------------------TATATAC-----------------AT-------------GTATGC------------------------------------------------------ATATACACATGTGTATGTATTAATTTTATAATTCAATGGAAATGGAA---------------TGAAGCTACAAGAT----------CTAT----------------------------------------------------------TTTACGAA------------------------A-TACACATTGTTTGTCGCTCATTCT
dp5 2:18003738-18003893 - TAA--------------CCATCTA----TTGTACAT----CAATTT-----------------AATCAAGTA------------------------------------------------------------------------------------------------------------------------------------AA--ATAT-------------------------TAATAAG--ACATCTACTACATTATTAAAA-C------ATAA-ATAGTTCA--------------------------------T---------------------------------------TATT-------------------------------------------A------------------CGTACAATATT-----------------------------------------------------------T---------------------------------------------------C-------------------------------------------------------------------------------------------T-----------------------TTGCAGCTCAAATG------GTATGCAATT-TTGGTTTCCAGAAATCGTAAAC------------------------------CGGTCATCTG
droPer2 scaffold_62:37159-37339 + A----------------------GACAGACGGGCAGGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATAT--------------------------------------------A-------AATAT--------AA------------------------------------TGTAA-----------TATAA-----------------------------------------------------------------TAATAAAATATATAT-AAAAACTCCA------------------------------------------------------------------------------------------------------------ATATAA-------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC
droAna3 scaffold_13248:4735966-4736256 - GTTTGCGTAGAAACAGACAGACAGACAGACGGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACT-------TTTGACCAAAATTATAATACCCT-------CT----------------------GCAAGGGTATA-------AAAAT--------GTATACATT----GATCAATTT--------GT-----------------------------TAA------------------------------------------------------------------TGTG--------------------------------------------------------------------------------------------------------TATTTAT---------------TAGT-------------GTATGC--------------------------------------------------------ATAGTCGTATAACTGCATC---------------------------------------------------------------TA---AG----------------------TTCCATTTCAAACGATTTTTGAATGTAATTGTTCGTCGACAGACGTTTTTGAC------------------------------TATA--CATC
droBip1 scf7180000394378:401-688 + GTTCGCGTAGAAACAGACAGACGGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACT-------TTTGGACAAAATTATAATACCCT-------CT----------------------GCAAGGGTATA-------AATAT--------ATTATATTT-------------------------------------------------------TA----------------------------------------------------------TTTTATTTTATATATA-ATGACCAC------------A----------------------------------------------------------------------------------------------------------------------------------------------------AAC---AGTTAAGCATCGAATGTGG-------------------------------TTTGCAATGGAAAAGGCA---------------TTT---------------------------------------------------------------------------------------------GGGT--TGTTTTCGTATTCGGGAAAAGAAACCGTCGGTTGGCCGGGCA
droKik1 scf7180000302659:6303-6544 - ----------------------------ACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAAACATCTCATTCACTGCGTTGCAAACT-------TCTGACTGAAATTATAATACCCT-------------------------------GCAAGGGTATA-------AAAAG--------ATGTAATTT----TATATATTACATATAAC--ATAATTATTTGG---------T-----TT---T---------------------------------------------------------------------GATAAA-ATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATATTATTTTTAA------------------------------------------------------------------------------------------------------------------------------ATCGAATAAAAACG------CTATATA-TT-TTAGTTTTAAAA----------------------------------------------TATC
droFic1 scf7180000453932:280637-280901 + GAA---------ACAGACAGACCGACAGACGGACAGACTTATTTTGATTCTGATCGTGATGCTGATCAAGAATATATATACTTTAGAGGGTCTGAGGTGTCTCCTTCACTGCCTTGCAAACT-------TCTGACTGATATTATAATACCCCTT--GGTCT----------------------GCAAGGGTAAA-------TAAT------------------------------------------------AAAG-----------CTTTA-----------------------------------------------------------------TAAAAGAGTATGGGT-AAATAATATC-------------------------------------------GCGTGATACATTCAGATTT-------------------------TCG----------ATTTCTTTTCAGCTTCAGCTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---TA--TCTTTCAAATCGTTCTC------------------------------AGA---TAAT
droEle1 scf7180000490229:13018-13282 + GTTTG------------CGTAGAAACGGACGGA--CGGCTAGATCGACTCTCCTAGTGATGCTGATCAAAAATATATTT-TTTTATATGGTCGGAAAAGTCTGCTTCACTGCGTTGCAAACT-------TCTCAGTGGCATTATAAA-------------T----------------------GCAAGGGTAAA-------AAAAA--------TTA-AATTA-----------------------ACAGAAA-------------------------------GTTTTAGTTTTATAGATATCATTTT---------------------------------------------------------------------------------------------------------------AGAGGT-------------------------CTATAAAACAAAAA--------------------------------------------------------------------------------------------------------------------------------------TATCGTTAAAATTCTTCACACAGAAGAC----------GCAG-TTTCAAAATATATA--------------------------------------------------ATATAGT----------------------------------CGACCGATCA
droRho1 scf7180000779741:49307-49548 - GTT--------------CATACGGACAGACAGAC----------------------TGATCCTGAACAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACATACT-------TTTGCACGAATACAATATACCCTTT-TACTCTAC-------GAGTAACGGGTAT----------A-------AATAC--------CACATATTT--------------------------------------------------TT---AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCATATA------------------------TTTAAAATA---------------------------------------------------------------------------------------------CAATGAAAACAAAAATAT-----------------------------------T--C-----------------------ATCCTGTTCAATCG------CAAAATTTCT-GAGGTTCCTAAAAATCGTTCAC------------------------------TCG---TCGC
droBia1 scf7180000299302:14639-14896 - AGA--------------CGGACGGACAGACGGACATGACTAGATCGACTCGTCTTGTGACGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGTCTCCTACACTGCGTTGCAAACT-------TCTGACTGATATCATTATACCCT-------CT----------------------GCAAGGGTATA-------AAAAC--------AC------------------------------ACAATAATTTTT---------T-----TT---AG-----------------------------------------------------------------------AT-AATAACAATTAAAATAACTTCATGAAATTACGTTATTTTTCAAAAGGAGGGCGATGTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATGCCAATATGCGT--TC------------------------------TTATCACATA
droTak1 scf7180000415421:11090-11347 + GGA--------------CAGACGGACAGACGGACATGGCTAGATCGACTCGGCTAGTGTCCCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGCTTCCTACTAGCTGTTACATACT-------TTTGCACGAATCTAGTATACCCTTT-TACTCTAC-------GAGTAACGGGTAT----------A-------ATTAA--------ATTAAATTAAAATTATATTAAACTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTGCAA-------------ACATTTTATTGGCGCAGCCGGTAGGATCTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-GTCATTTTTAAAAATCGGT-AC------------------------------TGATCATCTA
droEug1 scf7180000408984:226241-226505 + -----------------CGGACGGACAGACGGACATGGCTCAATCGACTTCGCTATTGATCCTGATCAAGAATATATATACTTTATAGGGTCGCAAAAGCTTCCTTCTATCTGTTACATACT-------TTTCAACGAATCTAGTATACCCTTT-TACTCTAC-------GAGTAACGGGTAT----------A-------AAAAT--------GTTAATGTT-------------------------------------------------------TATTATT--------GT---------GTT-------------------------GGTTTAT---------TGTAAA-ATATCTAT------------A----------------------------------------------------------------------------------------------------------------------------------------------------AGCATAAGTTATAAATTAA------------------------------------------------ACTTAAT---------------TGAAGCCAGAAGAC----------GTAT---------------------------------------------------TT-TTTATATTCGGA------------------------A-AA------------------CACT
dm3 chr3R:27890305-27890515 + GCT--------------CATACGGACATACGGACATGGCTAGATCGACTCGGCTATTAATCCTGATCAAGAATATATATACTTTATATAGTCGGAAACGCTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAATATACCCTTT-TACTCTAC-------AAGTAACGGGTAT----------A-------AAAAG--------AA------------------------------------CATGA-----------TATAC-----------------------------------------------------------------CATTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------------CGTAATTTTTTA----------------AAAAGTTCTG---T-----------------------TTTCAGT-------------------------------------------------------------------------------------T
droSim2 2r:3702916-3703116 + GTT--------------TATACGGACAGACGGGCATGGCTAGATCGACTAGGCTATTGATTCTGATCAAGAATATATATATTTTATATAGTCGGAAACTCTTCCTTCTGCCCGTTACATACT-------TTTTGACGAATATAGTATAACCTTT-TACCCTAC-------GAGAAACACGTAT----------A-------AAAATCA--------TT-----------------------------------------------------TA-----------------------------------------------------------------TATGTACATA--------------------------------------------------------------------------------------------------------TAT-------------------GTAA-------------TTATCC---------------------------------------------------A-------------------------------------------------------------------------------------------T-----------------------GTTCG-----------------------------------------------------------------------------------CATCA
droSec2 scaffold_1:1450085-1450309 + GTT--------------CATACGGACAGACGGACATGGCCAGATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTACCTGTTACATACT-------TTTCAACGAATCTAGTATACCCTTTTTACTGTAT-------GAGTAACGGGTAT----------A-------AAAAG--------GGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGTGTTATATATCTAGATGT-------------------------CTGTATAAAAAAAATGCCAGTGCAGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------------------------------TTG-TATTTT
droYak3 2R:9049655-9049918 + G------------------GACGGACAGACGGACATGGCCAAATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAGTATACCCTTT-TACTCTAC-------GAGTAACGGGTAT----------AATGACTTGTAGGG--------------------------------------------ACTTAG-----------T------ACAA-ATACATTT--------------------------------T---------------------------------------CATT-------------------------------------------T------------------TGTAGAACATTATTTATTTTTTAAT---TTTG------------------------TTTGAAGTA---------------------------------------------------------------------------------------------CAAAGGAAA----------------------------------------------------------------------------------------------TG-----------TTTCAGAGAAGCTCGAC------------------------------T-GTCATTAA
droEre2 scaffold_4929:22509489-22509789 - GTT--------------CATACGGACAGACGGACATGGCCAGTTCGACTCGGCTATTGACCCTGATCAAGAATATATATACTTTACATGGTCGGAAACGCTTCCTTCTGCTTGTTACATACT-------TTTCAACGAATCTAGTATACCGTTT-TACTCTAC-------GAGTAACGGAGAG----------A-------ATAAA--ATAT-------------------------TTGTAAA--ATA-----------------------------------------GTTTTAAGGATATTATTCTAAAAGAATTTATTATTCTAAAAAGGTTGA----------GAGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGAATATATAATATAAGCTTACAGTTCACACA------TGATGGCGTG-TGATTTGGCAGAAA----------------------------AACC------GTGTCGCAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTT--------------CGCATAGACAAACGGGCATGGCTAG----------------ATGCTGATCAAGAATATATACACTTTCTGGGGTCTAAGATTCTTACTTCTGCCTTTTAACCATT-------TG-TAGTGGGCTCACCA--TCGTTC-TGCTTTAA-------AAGAAA--------------------------------ATATATAT------------------------------ATAGGAGTTAG-----------TA---TA---AAATATC-------------------ATC-------------------------TGTTTA----------TATAAA-ATATC-------------------------------------------------------------------------------------------------------------ATCATATAA-------------TCATCT---------------------------------------------------G-------------------------------------------------------------------------------------------T-----------------------TTTCAGCTCAAACG------GAATGCAGTT-TTGGTTTCCAGAAATCGTTAAC------------------------------CGATCATCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.TT--------------CGCATAGACAAACGGGCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003000000000000000000000000000000000300000000000000000000000000000
...........................................................TGCTGATCAAGAATATATACACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24201.20240000020000000000000000000000160400020000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------TTTCAGCTCAAACG------GAATGCAGT................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
..T--------------CGCATAGACAAACGGGCATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000100000000000000000000000000000000
.TT--------------CGCATAGACAAACGGGCATGGCTAG----------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTT-TTGGTTTCCAGAAATCGTT...........................................2611.001000000000000000000000000000000000000000100000000000000000000000
...........................................................TGCTGATCAAGAATATATACACTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000001010000000000000000000000000000000000
..........................................................ATGCTGATCAAGAATATATACACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000000011000000000000000000000000000000000
...........................................................TGCTGATCAAGAATATATACACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000000000000000000000000000020000000000000000000000000000000000
.................................................................TCAAGAATATATACACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000010000000000000000000000000000000
............................................................GCTGATCAAGAATATATACACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
droMoj3
G------------------GACAGACAGACGGACAGGGCCAAATCAACTCAGCTCGTCGCCCTGATCAAGAATATATATACTTTGTGGGGTCTGCCACGCCTCCTTCTGCCTGTTACATACA-------TTTCAACAAAACCATTATACCCTGA-TTTCCCATTGAAAATGGGTTCAGGGTAT----------A-------AAAAATAT-------------------------------------------------------------------------TGTATA--------------------------------T----------------------GTATG--------------------------------------------------------------------------------------------------------TGTATAA--------------------------------AAATTC---------------------------------------------------GGCCTCTGACCATGAAAA---------------------------------TGTCATCGTCTT--------------------------------------------------------------TGTTG------GGGAGCGAC---TGATTTACAGAATT-----------------------------------------CGTTGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................GACAGACAGACGGACAGGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.35272700000
.................................................................................................................................TTTCAACAAAACCATTATACCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.357700000
........................................AAATCAACTCAGCTCGTCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000003
...................................................................................................................ACATACA-------TTTCAACAAAACCATTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.153300000
..............................................................................................................................................ATTATACCCTGA-TTTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
........................................................................TATATATACTTTGTGGGGTCTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
........................................................TCGCCCTGATCAAGAATATATATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.....................................................................................................................ATACA-------TTTCAACAAAACCATTATACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
.................................................................................TTTGTGGGGTCTGCCACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
........................ACAGACGGACAGGGCCAAATCAACTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
droGri2
GTT--------------TGCATAG---------------------AACTCGGCAAATGATGCTGGTCAAGAATTGAAATATTATAATGAGTCGAATAAGTCTCCTTCAATGCGATACAAACT-------TATA------------ATAACCT-------CT----------------------ACAATGGTCTA-------AAAAA--------AAA----------------------------------------------------------------TTCATTA--------------------------------A---------------------------------------AATC-------------------------------------------G------------------AGTATAACATT-----------------------------------------------------------T---------------------------------------------------T------AGTTATG---A---------------------------------CATAATCGT------------------------GTCCA---T-----------------------TTTCAGT---------------------------------------------------------------------------------TTCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
-----------------CGGACGGACGGACGGACAGGGCTAGATCGACTCGGTTGTTGATCCTGATCAAGAATATGTATACTTTGTGGGGTCGGAGAAGCTTGCTTCTGCCTGTTACATACA-------TTTTGGCGACTTTAATATACCATTT-CACCCTAT-------GGGTGTATAGTAT----------A-------AAGAGGAA------------------------TAT--------GT-----------------------------ATA------------------------------------------------------------------TATG--------------------------------------------------------------------------------------------------------TATATAC-----------------AT-------------GTATGC------------------------------------------------------ATATACACATGTGTATGTATTAATTTTATAATTCAATGGAAATGGAA---------------TGAAGCTACAAGAT----------CTAT----------------------------------------------------------TTTACGAA------------------------A-TACACATTGTTTGTCGCTCATTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................TAT----------A-------AAGAGGAA------------------------TAT--------GT-----------------------------ATA------------------------------------------------------------------TATG--------------------------------------------------------------------------------------------------------TA...............................................................................................................................................................................................................................................................................................................2611.00100010
.......................................TAGATCGACTCGGTTGTTGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.5010001000
.............................................................................................................................................TAATATACCATTT-CACCCTAT-------GGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15303000
...................GACGGACGGACGGACAGGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.13110000
....................ACGGACGGACGGACAGGGCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.11110000
..........................................................................................................CTGCCTGTTACATACA-------TTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10202000
....................ACGGACGGACGGACAGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.08101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAA------------------------A-TACACATTGTTTGTCGCTC.....25160.06101000
............................................................................TATACTTTGTGGGGTCGGAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
dp5
TAA--------------CCATCTA----TTGTACAT----CAATTT-----------------AATCAAGTA------------------------------------------------------------------------------------------------------------------------------------AA--ATAT-------------------------TAATAAG--ACATCTACTACATTATTAAAA-C------ATAA-ATAGTTCA--------------------------------T---------------------------------------TATT-------------------------------------------A------------------CGTACAATATT-----------------------------------------------------------T---------------------------------------------------C-------------------------------------------------------------------------------------------T-----------------------TTGCAGCTCAAATG------GTATGCAATT-TTGGTTTCCAGAAATCGTAAAC------------------------------CGGTCATCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
A----------------------GACAGACGGGCAGGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATAT--------------------------------------------A-------AATAT--------AA------------------------------------TGTAA-----------TATAA-----------------------------------------------------------------TAATAAAATATATAT-AAAAACTCCA------------------------------------------------------------------------------------------------------------ATATAA-------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................TCTGGACGTTACACACATCCACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23204.35878700000
...........................................................TGCTGATCAAGAATATATATACTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27201.40280280000
...........................................................TGCTGATCAAGAATATATATACTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000002
............................................CGACTCGGCTATTGATGCTGATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102020000
......................................................................................GGGGTCGGAAACGATTCCTTCTGGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102020000
.........................................AATCGACTCGGCTATTGATGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.....................................GCTCAATCGACTCGGCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
droAna3
GTTTGCGTAGAAACAGACAGACAGACAGACGGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACT-------TTTGACCAAAATTATAATACCCT-------CT----------------------GCAAGGGTATA-------AAAAT--------GTATACATT----GATCAATTT--------GT-----------------------------TAA------------------------------------------------------------------TGTG--------------------------------------------------------------------------------------------------------TATTTAT---------------TAGT-------------GTATGC--------------------------------------------------------ATAGTCGTATAACTGCATC---------------------------------------------------------------TA---AG----------------------TTCCATTTCAAACGATTTTTGAATGTAATTGTTCGTCGACAGACGTTTTTGAC------------------------------TATA--CATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................ATGCTCATATCGACTCAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21206.2512500000125
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATC---------------------------------------------------------------TA---AG----------------------TTCCATTTCAAACGAT.............................................................................2611.001010000
...........................................................................................................................................................................................................................................................................................................................................................G--------------------------------------------------------------------------------------------------------TATTTAT---------------TAGT-------------GTATGC--------------------------------------------------------ATA.........................................................................................................................................................................................................2111.001010000
..............................GGACATGCTCATATCGACTCAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
...........................GACGGACATGCTCATATCGACTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
....................................................................................ATAGGGTCGGAGATGTCTCCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
droBip1
GTTCGCGTAGAAACAGACAGACGGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACT-------TTTGGACAAAATTATAATACCCT-------CT----------------------GCAAGGGTATA-------AATAT--------ATTATATTT-------------------------------------------------------TA----------------------------------------------------------TTTTATTTTATATATA-ATGACCAC------------A----------------------------------------------------------------------------------------------------------------------------------------------------AAC---AGTTAAGCATCGAATGTGG-------------------------------TTTGCAATGGAAAAGGCA---------------TTT---------------------------------------------------------------------------------------------GGGT--TGTTTTCGTATTCGGGAAAAGAAACCGTCGGTTGGCCGGGCASizeHit CountTotal NormTotal
No Reads
droKik1
----------------------------ACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAAACATCTCATTCACTGCGTTGCAAACT-------TCTGACTGAAATTATAATACCCT-------------------------------GCAAGGGTATA-------AAAAG--------ATGTAATTT----TATATATTACATATAAC--ATAATTATTTGG---------T-----TT---T---------------------------------------------------------------------GATAAA-ATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATATTATTTTTAA------------------------------------------------------------------------------------------------------------------------------ATCGAATAAAAACG------CTATATA-TT-TTAGTTTTAAAA----------------------------------------------TATCSizeHit CountTotal NormTotal
No Reads
droFic1
GAA---------ACAGACAGACCGACAGACGGACAGACTTATTTTGATTCTGATCGTGATGCTGATCAAGAATATATATACTTTAGAGGGTCTGAGGTGTCTCCTTCACTGCCTTGCAAACT-------TCTGACTGATATTATAATACCCCTT--GGTCT----------------------GCAAGGGTAAA-------TAAT------------------------------------------------AAAG-----------CTTTA-----------------------------------------------------------------TAAAAGAGTATGGGT-AAATAATATC-------------------------------------------GCGTGATACATTCAGATTT-------------------------TCG----------ATTTCTTTTCAGCTTCAGCTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---TA--TCTTTCAAATCGTTCTC------------------------------AGA---TAATSizeHit CountTotal NormTotal
No Reads
droEle1
GTTTG------------CGTAGAAACGGACGGA--CGGCTAGATCGACTCTCCTAGTGATGCTGATCAAAAATATATTT-TTTTATATGGTCGGAAAAGTCTGCTTCACTGCGTTGCAAACT-------TCTCAGTGGCATTATAAA-------------T----------------------GCAAGGGTAAA-------AAAAA--------TTA-AATTA-----------------------ACAGAAA-------------------------------GTTTTAGTTTTATAGATATCATTTT---------------------------------------------------------------------------------------------------------------AGAGGT-------------------------CTATAAAACAAAAA--------------------------------------------------------------------------------------------------------------------------------------TATCGTTAAAATTCTTCACACAGAAGAC----------GCAG-TTTCAAAATATATA--------------------------------------------------ATATAGT----------------------------------CGACCGATCASizeHit CountTotal NormTotal
No Reads
droRho1
GTT--------------CATACGGACAGACAGAC----------------------TGATCCTGAACAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACATACT-------TTTGCACGAATACAATATACCCTTT-TACTCTAC-------GAGTAACGGGTAT----------A-------AATAC--------CACATATTT--------------------------------------------------TT---AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCATATA------------------------TTTAAAATA---------------------------------------------------------------------------------------------CAATGAAAACAAAAATAT-----------------------------------T--C-----------------------ATCCTGTTCAATCG------CAAAATTTCT-GAGGTTCCTAAAAATCGTTCAC------------------------------TCG---TCGCSizeHit CountTotal NormTotal
No Reads
droBia1
AGA--------------CGGACGGACAGACGGACATGACTAGATCGACTCGTCTTGTGACGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGTCTCCTACACTGCGTTGCAAACT-------TCTGACTGATATCATTATACCCT-------CT----------------------GCAAGGGTATA-------AAAAC--------AC------------------------------ACAATAATTTTT---------T-----TT---AG-----------------------------------------------------------------------AT-AATAACAATTAAAATAACTTCATGAAATTACGTTATTTTTCAAAAGGAGGGCGATGTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATGCCAATATGCGT--TC------------------------------TTATCACATASizeHit CountTotal NormTotal
No Reads
droTak1
GGA--------------CAGACGGACAGACGGACATGGCTAGATCGACTCGGCTAGTGTCCCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGCTTCCTACTAGCTGTTACATACT-------TTTGCACGAATCTAGTATACCCTTT-TACTCTAC-------GAGTAACGGGTAT----------A-------ATTAA--------ATTAAATTAAAATTATATTAAACTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTGCAA-------------ACATTTTATTGGCGCAGCCGGTAGGATCTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-GTCATTTTTAAAAATCGGT-AC------------------------------TGATCATCTASizeHit CountTotal NormTotal
No Reads
droEug1
-----------------CGGACGGACAGACGGACATGGCTCAATCGACTTCGCTATTGATCCTGATCAAGAATATATATACTTTATAGGGTCGCAAAAGCTTCCTTCTATCTGTTACATACT-------TTTCAACGAATCTAGTATACCCTTT-TACTCTAC-------GAGTAACGGGTAT----------A-------AAAAT--------GTTAATGTT-------------------------------------------------------TATTATT--------GT---------GTT-------------------------GGTTTAT---------TGTAAA-ATATCTAT------------A----------------------------------------------------------------------------------------------------------------------------------------------------AGCATAAGTTATAAATTAA------------------------------------------------ACTTAAT---------------TGAAGCCAGAAGAC----------GTAT---------------------------------------------------TT-TTTATATTCGGA------------------------A-AA------------------CACTSizeHit CountTotal NormTotal
No Reads
dm3
GCT--------------CATACGGACATACGGACATGGCTAGATCGACTCGGCTATTAATCCTGATCAAGAATATATATACTTTATATAGTCGGAAACGCTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAATATACCCTTT-TACTCTAC-------AAGTAACGGGTAT----------A-------AAAAG--------AA------------------------------------CATGA-----------TATAC-----------------------------------------------------------------CATTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------------CGTAATTTTTTA----------------AAAAGTTCTG---T-----------------------TTTCAGT-------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................TTATATAGTCGGAAACGCTTCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................242055.9011180000000000000000000000090000000000001504105100026000016148000000000000000000000000000000000000000000000000000000000000000000000000000000050000000070727300820059007600000000000000000000000000000000001310154000121000001583001000000020000200011200000000000000000000000000000000000000000000010001000000000000400063143600000000090000000000000041564038000000
..................................................................................TTATATAGTCGGAAACGCTTCCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................252016.90338000000000000000000000000000000000000001074103020100010000100000000000000000000000000000000000000000000000000000000000000000000000000000000042001020094800140200000000000000000000000000000000010000000000000020000000000100174021036163900000000000000000000000000000000000000000000000000000000000051010021001010000911000000000000001820100000
...........................................................TCCTGATCAAGAATATATATACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................242012.10242000000000000000000000000000000000000000020000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000010000000360000001003800000000000000000000000000000000070003220000000000000000000000000004061060000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000200000000
..................................................................................TTATATAGTCGGAAACGCTTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................232011.302260000000000000000000000310000000000002010700000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000216015800014801000330000000000000000000000000000000013020000304002000900020000020001600020600000000002000000000000000000000000000000000000000000000000000000070050000001940000000000000006913000000
..............................................................................................................................................................TCTAC-------AAGTAACGGGTAT----------A-------AAAAG--------AA------------------------------------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..T--------------CATACGGACATACGGACATGGCTAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2719.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TTTCAACGAATCTAATATACCCTTT-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2546.502600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCCTGATCAAGAATATATATACTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25205.70114000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000020000000000000000000000000000000000000000001010000000000000000000000000208780000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................TTTCAACGAATCTAATATACCCTTT-TAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2845.252100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCCTGATCAAGAATATATATACTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26205.20104000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000015204800001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..T--------------CATACGGACATACGGACATGGCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................TAC-------AAGTAACGGGTAT----------A-------AAAAG--------AA------------------------------------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CATACGGACATACGGACATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2144.25170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000100000001000000000000000000000000000000000000000000000000000010000000000000000000000000000001300002000101000000000100020
..............................................................................................................................................................TCTAC-------AAGTAACGGGTAT----------A-------AAAAG--------AA------------------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................T-------TTTCAACGAATCTAATATACCCTTT-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2643.751500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TTTCAACGAATCTAATATACCCTTT-T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2643.501400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TTTCAACGAATCTAATATACCCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24122.67320000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000090903180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TATAGTCGGAAACGCTTCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21202.354700000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000011000000000000000001000000000000000000000000100012290000000000000020000001001000000000000000000300000000010000000000000000000000004000200002000000000000000000000010000000000000000000010000
..................ATACGGACATACGGACATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................TATACTTTATATAGTCGGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TACTCTAC-------AAGTAACGGGTAT----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................CTCGGCTATTAATCCTGATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TACGGACATGGCTAGATCGACTCGGCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CCCTTT-TACTCTAC-------AAGTAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTATATAGTCGGAAACGCTTCCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1530000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTCCTTCTGCCTGTTACATACT-------TTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TGGCTAGATCGACTCGGCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................CTTCTGCCTGTTACATACT-------TT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TATATAGTCGGAAACGCTTCCTTCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................TACTTTATATAGTCGGAAACGCTTCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................GGAAACGCTTCCTTCTGCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
..........................................................................................TCGGAAACGCTTCCTTCTGCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CTTCTGCCTGTTACATACT-------TTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTATATAGTCGGAAACGCTTCCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ATATAGTCGGAAACGCTTCCTTCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................ATATACTTTATATAGTCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..................................................................................................GCTTCCTTCTGCCTGTTACATACT-------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CTTCTGCCTGTTACATACT-------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTATATAGTCGGAAACGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................ATATACTTTATATAGTCGGAAACGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..............................................................................................AAACGCTTCCTTCTGCCTGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
...................................................................................TATATAGTCGGAAACGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CATACGGACATGGCTAGATCGACTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGATCGACTCGGCTATTAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CATACGGACATGGCTAGATCGACTCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TAATCCTGATCAAGAATATAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................................TAC-------AAGTAACGGGTAT----------A-------AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................CATACGGACATGGCTAGATCGACTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TCGGCTATTAATCCTGATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATACGGACATGGCTAGATCGACTCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TTAATCCTGATCAAGAATATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................TTT-TACTCTAC-------AAGTAACGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CATACGGACATGGCTAGATCGACTCGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................ATTAATCCTGATCAAGAATAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................TACGGACATGGCTAGATCGACTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATGGCTAGATCGACTCGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................CCTGATCAAGAATATATATACTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ATATAGTCGGAAACGCTTCCTTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CTTTATATAGTCGGAAACGCTTCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000000
..........................................................................................................CTGCCTGTTACATACT-------TTTCAACGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TATAGTCGGAAACGCTTCCTTCTGCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTATATAGTCGGAAACGCTTCCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TGGCTAGATCGACTCGGCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................ATGGCTAGATCGACTCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................TACTTTATATAGTCGGAAACGCTTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TCTAATATACCCTTT-TACTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TGCCTGTTACATACT-------TTTCAACGAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TATATACTTTATATAGTCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TATATAGTCGGAAACGCTTCCTTCTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ACATGGCTAGATCGACTCGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000
........................................................................................................TTCTGCCTGTTACATACT-------TTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................AAGAATATATATACTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................AACGCTTCCTTCTGCCTGTTACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CATGGCTAGATCGACTCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TCTGCCTGTTACATACT-------TTTCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTATATAGTCGGAAACGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGTTACATACT-------TTTCAACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTCCTTCTGCCTGTTACATACT-------TTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CATGGCTAGATCGACTCGGCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTT--------------TATACGGACAGACGGGCATGGCTAGATCGACTAGGCTATTGATTCTGATCAAGAATATATATATTTTATATAGTCGGAAACTCTTCCTTCTGCCCGTTACATACT-------TTTTGACGAATATAGTATAACCTTT-TACCCTAC-------GAGAAACACGTAT----------A-------AAAATCA--------TT-----------------------------------------------------TA-----------------------------------------------------------------TATGTACATA--------------------------------------------------------------------------------------------------------TAT-------------------GTAA-------------TTATCC---------------------------------------------------A-------------------------------------------------------------------------------------------T-----------------------GTTCG-----------------------------------------------------------------------------------CATCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................ATATATATATTTTATATAGTCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2451.80900000017000010000
.......................................................................ATATATATATTTTATATAGTCGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2551.00500000002000030000
.......................................................................ATATATATATTTTATATAGTCGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.80400000000000040000
.....................................................................GAATATATATATTTTATATAGTCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.80400000001020010000
...................TACGGACAGACGGGCATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.75300000300000000000
.......................................................................ATATATATATTTTATATAGTCGGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.60300000012000000000
...................TACGGACAGACGGGCATGGCTAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000010000000000
..............................................................................TATTTTATATAGTCGGAAACTCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000100000000
.......................................................................................TAGTCGGAAACTCTTCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.29200000000011000000
.....................................................................................................TCCTTCTGCCCGTTACATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.25100000010000000000
.........................CAGACGGGCATGGCTAGATCGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.25100000000000010000
........................ACAGACGGGCATGGCTAGATCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.25100000000001000000
.......................................................................ATATATATATTTTATATAGTCGGAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.20100000000000001000
.....................................................................................TATAGTCGGAAACTCTTCCTTCTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.17100000000001000000
.....................................................................................TATAGTCGGAAACTCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.17100000010000000000
..................................................................................TTATATAGTCGGAAACTCTTCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.17100000010000000000
.......................................................................ATATATATATTTTATATAGTCGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.14100000000000010000
.......................................................................ATATATATATTTTATATAGTCGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.13100000000000010000
.......................................................................ATATATATATTTTATATAGTCGGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.11100000000000010000
................................................................................TTTTATATAGTCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15100.10100000000001000000
.................................................................................TTTATATAGTCGGAAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.08110000000000000000
............................................................................TATATTTTATATAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15190.05100000000001000000
........................................................TGATTCTGATCAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
.....................................................TATTGATTCTGATCAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000010000000
....................................................CTATTGATTCTGATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000000000000000
droSec2
GTT--------------CATACGGACAGACGGACATGGCCAGATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTACCTGTTACATACT-------TTTCAACGAATCTAGTATACCCTTTTTACTGTAT-------GAGTAACGGGTAT----------A-------AAAAG--------GGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGTGTTATATATCTAGATGT-------------------------CTGTATAAAAAAAATGCCAGTGCAGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------------------------------TTG-TATTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................TCGACTCGGCTATTGATCCTGATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24201.402800280
.................................................................................................................................TTTCAACGAATCTAGTATACCCTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010010
...........................................TCGACTCGGCTATTGATCCTGATCAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.4088000
.................................................................................................................................TTTCAACGAATCTAGTATACCCTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.4088000
.......................................................................ATATATATACTTTATATGGTCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1533000
.TT--------------CATACGGACAGACGGACATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530030
.......................................................................ATATATATACTTTATATGGTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020020
.TT--------------CATACGGACAGACGGACATGGCCAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28100.1011000
..T--------------CATACGGACAGACGGACATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1021010
...........................................TCGACTCGGCTATTGATCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020020
...................TACGGACAGACGGACATGGCCAGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.0811000
..T--------------CATACGGACAGACGGACATGGCCAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.0810010
.................................................CGGCTATTGATCCTGATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100
..T--------------CATACGGACAGACGGACATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010
............................................CGACTCGGCTATTGATCCTGATCAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0511000
............................................CGACTCGGCTATTGATCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000
.TT--------------CATACGGACAGACGGACATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0511000
.......................................................................ATATATATACTTTATATGGTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0511000
.......................................CAGATCGACTCGGCTATTGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001
...........................................TCGACTCGGCTATTGATCCTGATCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510010
.........................................................................................................................T-------TTTCAACGAATCTAGTATACCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
.........................CAGACGGACATGGCCAGATCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0511000
...........................................TCGACTCGGCTATTGATCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010
...........................................TCGACTCGGCTATTGATCCTGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100
...........................................TCGACTCGGCTATTGATCCTGATCAACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0511000
...............................GACATGGCCAGATCGACTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001
........................................................................TATATATACTTTATATGGTCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0511000
.........................................................................................................................T-------TTTCAACGAATCTAGTATACCCTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0511000
...................................................................................................................ACATACT-------TTTCAACGAATCTAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010
...............................................CTCGGCTATTGATCCTGATCAAGAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0511000
droYak3
G------------------GACGGACAGACGGACATGGCCAAATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAGTATACCCTTT-TACTCTAC-------GAGTAACGGGTAT----------AATGACTTGTAGGG--------------------------------------------ACTTAG-----------T------ACAA-ATACATTT--------------------------------T---------------------------------------CATT-------------------------------------------T------------------TGTAGAACATTATTTATTTTTTAAT---TTTG------------------------TTTGAAGTA---------------------------------------------------------------------------------------------CAAAGGAAA----------------------------------------------------------------------------------------------TG-----------TTTCAGAGAAGCTCGAC------------------------------T-GTCATTAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................TACTCTAC-------GAGTAACGGGTAT----------AATGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.25504100000000
...........................................................................ATATACTTTATATGGTCGGAAACGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15300300000000
..................................................................................................................................TTCAACGAATCTAGTATACCCTTT-TA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000000000
.................................................CGGCTATTGATCCTGATCAAGAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05110000000000
.......................................................TTGATCCTGATCAAGAATATATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
.................................................................................................................................................................AC-------GAGTAACGGGTAT----------AATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
..........................................................................................TCGGAAACGCTTCCTTCTGCCTGTTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
.....................................GCCAAATCGACTCGGCTATTGATCCTGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05100100000000
droEre2
GTT--------------CATACGGACAGACGGACATGGCCAGTTCGACTCGGCTATTGACCCTGATCAAGAATATATATACTTTACATGGTCGGAAACGCTTCCTTCTGCTTGTTACATACT-------TTTCAACGAATCTAGTATACCGTTT-TACTCTAC-------GAGTAACGGAGAG----------A-------ATAAA--ATAT-------------------------TTGTAAA--ATA-----------------------------------------GTTTTAAGGATATTATTCTAAAAGAATTTATTATTCTAAAAAGGTTGA----------GAGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGAATATATAATATAAGCTTACAGTTCACACA------TGATGGCGTG-TGATTTGGCAGAAA----------------------------AACC------GTGTCGCAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................GGCTATTGACCCTGATCAAGAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23130.0810000100
......................................................ATTGACCCTGATCAAGAATAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.0810000100
...................TACGGACAGACGGACATGGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0511000000

Generated: 05/16/2015 at 08:36 PM