ID:

dvi_3026

 Coordinate:

scaffold_12823:1650206-1650418 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.2 -11.2 -11.0

Flybase annnotation

CDS [Dvir\GJ18475-cds]; exon [dvir_GLEANR_328:9]; CDS [Dvir\GJ18475-cds]; exon [dvir_GLEANR_328:10]; intron [Dvir\GJ18475-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCCGCCAGTGCGGCGCAGCTCGTCGGTGACGCCCAGTCCCAATAATGGGGTAAGTTCAGGCTATGCTTGAAGTTATATTTAATCATTAATTACGCTAATTCGATTAAGTTAAGTCTTAAGTCTTAAGTTAAGCTTAGCGTGAGTGATCGATCGTGCCAGCAGAGACACTGTGCCACAGCAGAGACACTTTTCCTTTAACGCTTCAGTTGATTTTCATTTCTCACTTATGATTTCGTTTGCGTTATATTATGCGTGAATGCAGCTGCAACTGCAACAGCAACAGCAGCAGTACGGCAACAACTCATGCGAGCA
********************************************************************************************************************************************.(((((.((..((.(((..(((.((...)).)))....))))))))))))...................******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060679
140x9_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR060674
9x140_ovaries_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 V053
head
 M027
male body		 M028
head
 SRR060667
160_females_carcasses_total
.......................................................................................................................................................................................GACACTTTTCCTTTAACGCTTCAGTT........................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AGTGATCGATCGTGCCAGCAGT..................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TTCGATTGCGTTATATTATG............................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................GTACGGCAACAACTCATGCGAG.. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............CGCAGCTCGTCGGTGACGCC....................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGAGTGATCGATCGTGCCAGC........................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGTACGGC................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................CCCAATAATGGGGTAAGTTCAG............................................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......CAGTGCGGCGCAGCTCGTC................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................AGTTAAGTCTTAAGTCTTAAGT........................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................CTTAAGTCTTAAGTTAAG.................................................................................................................................................................................... 18 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................CGGGCCATCCTTGAAGTTA............................................................................................................................................................................................................................................. 19 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................TGAATGGAGCTGGAACTGC........................................ 19 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGCCACAGTAGAGACACA............................................................................................................................ 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................ATCAGAGACTCTATTCCT...................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
.............GTGCAGCTGGTCGGTGAC.......................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................................AACTGCAACAGCAACAGCA........................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCGGCGGTCACGCCGCGTCGAGCAGCCACTGCGGGTCAGGGTTATTACCCCATTCAAGTCCGATACGAACTTCAATATAAATTAGTAATTAATGCGATTAAGCTAATTCAATTCAGAATTCAGAATTCAATTCGAATCGCACTCACTAGCTAGCACGGTCGTCTCTGTGACACGGTGTCGTCTCTGTGAAAAGGAAATTGCGAAGTCAACTAAAAGTAAAGAGTGAATACTAAAGCAAACGCAATATAATACGCACTTACGTCGACGTTGACGTTGTCGTTGTCGTCGTCATGCCGTTGTTGAGTACGCTCGT
********************************************************************************************************.(((((.((..((.(((..(((.((...)).)))....))))))))))))...................******************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060672
9x160_females_carcasses_total
 V053
head
 SRR060682
9x140_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060660
Argentina_ovaries_total
.........ACGCCGCGTCGAGCAGCCACTG.......................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................GGTCCTATGTGTGACACGGT......................................................................................................................................... 20 3 2 0.50 1 0 1 0 0 0 0
...............................................................................................................................................................................................AGGCAATTGTGAAGTCAACCA..................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0
...............................................................................................................................................................................TGTCGTATCTGTGAAAAGA....................................................................................................................... 19 2 4 0.25 1 0 0 0 1 0 0
.......................................................................................................................................................................................CTATGAAAAGGAAGTTGCGTAG............................................................................................................ 22 3 5 0.20 1 0 0 0 0 1 0
.........................................................................................TAATACGACTAAGGTAATTC............................................................................................................................................................................................................ 20 3 16 0.06 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12823:1650156-1650468 + dvi_3026 CGCCGCCAGTGCGGCGCAGCTCGTCGGTGACGCCCAGTCCCAATAA------TGGGGTAAGTTCAG----------G---------CT--AT------------------GCTTGAAG-----------TTATAT----TTAATCATTAATTACGCTAATT-CGATTAAGTT--AAGTCT----T--------------AAGTCT----TAAG-----------TTAA-------------------------------------------GCTTAGCGTGAGT--------------------------------------------------------------------GATCGATCGTGCCAGCAGAGACACTGT--GC----------------------------------------------C-------------------------------ACAGCA---GA----GACA----------------C-------T----TTT-CCTTTAACGCTTCAGTTGATTTTCATTT--CTCACTTATGATTTCGTTTGCGTTATATTA-------TGCGTGA-------------ATGCAGCTGC---------------AA------CTGCAAC------------AGC----A------ACA---------------------------------------GCAGC------A------GTACGGCAA---CA---------ACTCATGCGAGCA
droMoj3 scaffold_6496:931721-932162 + dmo_914 CGCCGCCAGTGAGACGCAGCTCCTCAGTGACGCCCAGCGTTAATAA------CGGGGTAAGTTTAG----------CCAGGAAATTAA--TAAG------------------------------------------------------------TAACAAC-AAATTAATTG--AAGC------TAGTTAATAATTAAT----------TAGGTTAAGCTTAAGCTAAGAAAAAAAAAAAAAAAGATTGTGAAACTAAATTTATTTAAGTTGC--AGCT---GCAACAACAGAAAACTGAATTTTTTAGATATAATTACACAAATTATTAATAATTATAGATTAAATAATTGAATTGATACTAACAGCAGCAGCACTGCTAACAACAGCAACATGAATCAATTTTTGACTTAAGTTGAGAGTCTTCTACG---------------------------------ATC--AGCA----CACA----------------GTT-----TTCTATTT-TCTATTATTCCTAAGTTAATTTTCATTT--ATTGCTTATGATTTAA-----------GT-----------------------------TGCAACAGC---------------AA------CAGCAAC------------AAC----A------ACAGCCGCC-----------------------------------------------------------G---CA---------GCAGCAGC-AGCA
droGri2 scaffold_15245:16380973-16381384 - CGCCGCCAGTGCGTCGCAGCTCATCGGTGACGCCCAGTCCCAATG------TGGGGGTAAGTGTTG----------C------ACTCC--TCGGTGGCAG-----CC-----CTATAGCTGTAATT--AATTA--------------------TGCGCAAT-CAATTAAGTT--AGTAAG----T--------------AAGCGTTACGTAAG-----------TTAA---G---------------------------------TAAG-CTTTAAGCA---GTG-A--------------------------------------------------GT-------------GATCGATC---------------------------------------------------------------------GATCGTGCATCAACCACAAAAACTCAC-----ACAAACAGA------CACA----------------TTT--CC-TTTTCTTT-T-CTC---GCTTATGTTCATTTTCGTTT--CTCACTTATGATTTTA-----------ATA------ATGCCTCA-------------ATGCAGCTGCAACAAGAACAGCAGCAGCAGCAGCAGCAGC------------TAC----A------GCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAACAACTCAACAGCAACAACTTATACTCCAGCGATCA
droWil2 scf2_1100000004513:2336763-2337045 - CGCCACCAGTTAGACGCAGTTCATCAGTCACACCCAGTCCCAATGCCACCATGGGGGTAAGTAAAATGCCACTTAAC-------------------------------------------------------------------CAAAAAAAACTCACTTC-AAATTAAGTC--AAAC------T---AA-------TTTAGTTT----TAAC------ATAAGC----------------------------------------TTAGTTCTTAAGAT---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-----TTTGTGTT-T-TTTTATGA---------TTTCATTTT--AT----T----TTTAT-----------TTG-------CAC-------------------CTAAAAAC---------------AA------CACAAAAAACAAAAACTCAAACTTTTAGCCACCACCAACAAAT---------------------------CTTCACTATC---AGCAACAAGCACAGCTAAG---CA---------GCTCCAGTGAGCA
dp5 3:1096873-1097175 - CGCCGCCAGTGCGACGCAGCTCCTCGGTGACACCCAGTCCCAATGCTTCGGTGGGGGTAAGTGTGC----------------------------TTACCGACCGGGCTCCGACCGGCGCTTAGATT--AATGGCT-------------------CTCAAAT-TAATTAAGTT--AGAC------T---AA-------GTTCGGGCCAAGTTAG-----------CCGT--------------------------------------------TTAAGCCTAGAA----------------------------------------------------------------------------------------------------------------------------------------ACTTTCTAGA-------------------------CACTCTAC--------------ACA--------CGAGAGTTGTT-----TCTTG--T-T-GTTTTTGC---------TTTTATTAT--TTTATTTATGATTTAA-----------TTA-------TGC---AACAACAGCACGCGACGCATCTGC---------------AG----------------------------------------------------------------------------------CTGC---AACATAACACGCCGCTAAG---CA---------GCTCCAGCGAGCA
droPer2 scaffold_5:820224-820314 - TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC-----TTGCATTT-A-GTTGTGGC---------TTTGATTTC--ACATTAGTTGAGATGG-----------GCA-------CAC---A-------------CCGCAGCAGC---------------AG------CAGCAAC------------AAC----A------ACAA----------------------------------------------------------------------------------CCTGGCAACA
droAna3 scaffold_13266:9143488-9143777 - CGCCGCCAGTCAGACGCAGCTCTTCGGTGACCCCCAGTCCCAATGCCTCGGTTGGGGTAAGTTCC-------------------------------------------------------TAGGAT-----------------------GATATTTTCCTT-TAATTAAGTT--AGCG-T----C------------------------TAAG-----------CCAA---G---------------------------------GTAGCTTCTAAGCCAACGCT-C----------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------ACACCAGGACA----CACACGTACATACTA-TGTGGTCTTTTGTTTGGTTT---CTCTACGC---------TTTTGTTAC--TTCACTTATGATTTAA-----------TTA-------TGC---A-------------ACACAGCTGA---------------AGCAACCGCAGCAGC------------CAG----A------GCACCTGCAC---------------------------CTGCACCAGC------A------GCAGCTAAG---CA---------GCTCCAGCGAGCA
droBip1 scf7180000396427:287857-288154 - CGCCGCCAGTCAGACGCAGCTCATCGGTTACCCCCAGTCCCAATGCCTCGGTTGGGGTAAGTTTT--------------------------C----------------------------TAGAATAG-TA-----------------AAATATTTTCCTT-TAATTAAGTT--AGCCAA--------------------------------------------CTAA---G---------------------------------GTAGCTGTTAAGAAAGCTCT-C----------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------ACACCAGGACA----CACACGTACAGACTA-TGTGGTCTTTTGTTTGGTTT---CTCTCTGC---------TTTTGTTTC--TTCACTTATGATTTAA-----------TTA-------TGC---A-------------ACACAGCTGA---------------AGCAACCGCAGCAGC------------CAG----A------GCACCTGCAC---------------------------CTGCACCACC------ACCATCAGCAGCTAAG---CA---------GCTCCAGCGAGCA
droKik1 scf7180000302630:134706-134985 - CGCCGCCAGTCAGACGCAGCTCATCGGTGACACCCAGTCCC---GCCTCGGTCGGGGTAAGTTTGT----------C---------CT--CCTACTAC--------------------------------TTACT----ACA--------------CTAAA-TACCTAAGCT--AGTTA---------------------------------------------TTAA---G---------------------------------CTAGTCGTTAAGGC---GT---------------------------------------------------------------------------------------------------------------------------------------------CTCCG-------------------------TACTCTACA-TGGGCCACAAACACA----------------GTC-----TTTGGTTT-C-CTCTAAGC---------TTTTATTCT--TTAACTTATGATTTCA-----------CT-----TAATGC---A-------------ATGCAGCAGC---------------AG------CACCAAT-------------------A------CCAAC---CG---------------------------CAGCAGCAGCAGCACCATAGCTACCAACTAAG---CA---------GCTCCAGCGAGCA
droFic1 scf7180000453955:453158-453433 + CGCCGCCAGTGAGACGCAGCTCGTCGGTGACCCCCGGTCCCAACGCCTCGGTCGGGGTGAGTAGAA----------C---------TC--TTAGTTACCC---------------------------------------------ATCAA------GCTCC-CAACTAAGTT--AGCCAGCCAGC------------------------TAGT-----------CTAA---G---------------------------------TTAGTCGCTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------ACACTGGGTCA----CACA----------------GTC-----TTTGGTTT-C-CTCTACGC---------TTTTGTTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCCAC------------AAT----C------ACAAC---CA---------------------------CTGCAGCAGC------AGAATCTGCACCTCAG---CA---------GCTCCAGCGAGCA
droEle1 scf7180000491217:139351-139645 + CGCCGCCAGTGAGACGCAGTTCGTCGGTAACACCCAGTCCCAATGCCTCGGTCGGGGTAAGTTCAG----------T---------CC--TCAATTATCC-----GC-----------------------------------------------TTATAGC-TGTTTAAGTT--AGCCAC----C------------------------TAAG-----------CTAAGAAG---------------------------------TTAGTCGCTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------ACACTGGGTCA----CACA----------------GTC-----TTTGGTTT-C-CTCTACAC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CACCAACACCAACACCAGCAAC----AGCATCAGCACGCCACT---------------------------CTGCCCCAGC------AGAATCTGCAACTGAG---CA---------GCTCCAGCGAGCA
droRho1 scf7180000779196:223779-224057 - CGCCGCCAGTGAGACGCAGTTCGTCGGTAACACCCAGTCCCAATGCCTCGGTCGGGGTAAGTTCAG----------C---------CT--TCAGTTAC--------------------------------------------------------CGCCACCCCTATTAAGTT--AGACAC----C------------------------TAAA-----------CTAA---G---------------------------------TTAGTCGCTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------ACACTGGGTCA----CACA----------------GTCT----TTTGGTTT-C-CTCTATAC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTATTATTAATGC---A-------------ACGCAGCTAC---------------AG------CAACAAC------------AAC----A------GCACGCCACA---------------------------CTGCAACAGC------AGAATCTTCAACTAAG---CA---------GCTCCAGCGAGCA
droBia1 scf7180000302292:3320244-3320529 + CGCCGCCAGTGAGACGCAGCTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTAAGTGGAT--------------------CT--TTAATT--------------------------------CTTTAATCTGAACA--------------ATAAC-CAATTAAGTT--AGCCAC--------------------------------------------CTAA---G---------------------------------TTAGTTGCTAAGTC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------ACACTGGGTCA----CACA----------------GTC-----TTTGGTTT-C-CACTATGC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CACCAGCAACCACAACAGCAAC----A------GCACGCCAAT---------------------------CTGCTGCAGC------AGAATCACCAGCTAAG---CA---------GCTCCAGCGAGCA
droTak1 scf7180000415382:43282-43538 - CGCCGCCAGTGAGACGCAGCTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTGGGGGTAAGTTGAA----------T---------CT--TTAGCT--------------------------------CTTCTAT----ATA--------------ATAAT-CAATTAAGTGTTAGCTAT----C------------------------TAAA-----------CTAA---G---------------------------------TTAGTTTATAAGTC---GC-------------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------ACA------CA----CACA----------------GTC-----TTTGGTTT-C-CTCTATGC---------TTTTATTCTGTTTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AGCACCAACAGCAAC------------AAG----A------ACA------------------------------------------------------CCACCAGCTAAG---CA---------GCTCCAGCGAGCA
droEug1 scf7180000409672:4842447-4842728 - CGCCGCCAGTGCGACGCAGCTCGTCGGTGACCCCCAGTCCCAATGTCTCGGTCGGGGTGAGTTAAG----------C---------CT--TCAATTAT--------------------------------------------------------CCGCACC-TAGTTAAGTT--AGTAAA----C------------------------TAAA-----------CTAA---G---------------------------------TTAGTTGTTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------ACACGGGGTCA----CACA----------------GTC-----TTTGGTTT-C-CTCTTTGC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTAC---------------AG------CAACAACAACAACAACAACCAC----A------GCACGCAAAT---------------------------TTGCCGCAAC------AAAATCACCAACTAAG---TA---------GCTCCAGCGAGCA
dm3 chr2R:2817536-2817809 - CGCCGCCAGTCAGACGCAGTTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTGAGTTAAG----------C---------CT--TCAATTAC--------------------------------------------------------CTACACC-CAATTAAGTT--AGCCAC----T------------------------TAAT-----------CTAA---G---------------------------------CTAGTCGCTAAGCCTGGGTT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------C-----ACTCTGGGTCA----CACA----------------CTC-----TTTGGTTT-C-CTCTATGC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCAAC------------CAC----A------GCACGCGACT---------------------------CTGTCGCAGC------AGAATCACCAACTAAG---CA---------GCTCCAGCGAGCA
droSim2 2r:3684256-3684529 - dsi_26988 CGCCGCCAGTCAGACGCAGTTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTGAGTTAAG----------C---------CT--TCAACTAC--------------------------------------------------------CTACACC-CAATTAAGTT--AGCCAC----T------------------------TAAT-----------CTAA---G---------------------------------CTAGTCGCTAAGCCTGGGCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------C-----ACTCTGGGTCA----CACA----------------CTC-----TTTGGTTT-C-CTCTATGC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCAAC------------CAC----A------GCACGCGACT---------------------------CTGTCGCAGC------AGAATCACCAACTAAG---CA---------GCTCCAGCGAGCA
droSec2 scaffold_1:499615-499888 - CGCCGCCAGTCAGACGCAGTTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTGAGTTAAA----------C---------CT--TCAACTAC--------------------------------------------------------CTACACC-CAATTAAGTT--AGCCAC----T------------------------TAAT-----------CTAA---G---------------------------------CTAGTCGCTAAGCCTGGGCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------C-----ACTCTGGGTCA----CACA----------------CTC-----TTTGGTTT-C-CTCTATGC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCAAC------------AAC----A------GCACGCGACT---------------------------CTGTCGCAGC------AGAATCTCCAACTAAG---CA---------GCTCCAGCGAGCA
droYak3 2L:15550819-15551091 - CGCCGCCAGTTAGACGCAGTTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTAAGTTAAA----------C---------CTACTTAATTAC--------------------------------------------------------CTACACC-CAACTAAGTT--AGCCAC----A------------------------TAAT-----------ATAA---G---------------------------------GTAGTCGCTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------ACTCTGGGTCA----CACA----------------CTC-----TTTGGTTTTC-TTTTTTGC---------TATTACTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCAAC------------CAC----A------GCACGCGACT---------------------------CTGTCGCAGC------AGAATCACCAACTAAG---CA---------GCTCCAGCGAGCA
droEre2 scaffold_4929:19731974-19732243 + CGCCGCCAGTTAGACGCAGTTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTAAGTTAAA----------C---------CT--CCAATTAC--------------------------------------------------------TAAAACC-CCATTAAGTT--AGCCAC----T------------------------TAAT-----------CTAA---G---------------------------------CTAGTCGCTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------ACTGTGGGTCA----CACA----------------CTC-----TTTGGTTT-C-TTCTACGC---------TTTTATTCT--TTCACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCAAC------------CAC----A------GCACGCGACT---------------------------CTGTCGCAGC------AGAGTCACCAACTAAG---CA---------GCTCCAGCGAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGCCGCCAGTGCGGCGCAGCTCGTCGGTGACGCCCAGTCCCAATAA------TGGGGTAAGTTCAG----------G---------CT--AT------------------GCTTGAAG-----------TTATAT----TTAATCATTAATTACGCTAATT-CGATTAAGTT--AAGTCT----T--------------AAGTCT----TAAG-----------TTAA-------------------------------------------GCTTAGCGTGAGT--------------------------------------------------------------------GATCGATCGTGCCAGCAGAGACACTGT--GC----------------------------------------------C-------------------------------ACAGCA---GA----GACA----------------C-------T----TTT-CCTTTAACGCTTCAGTTGATTTTCATTT--CTCACTTATGATTTCGTTTGCGTTATATTA-------TGCGTGA-------------ATGCAGCTGC---------------AA------CTGCAAC------------AGC----A------ACA---------------------------------------GCAGC------A------GTACGGCAA---CA---------ACTCATGCGAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACA----------------C-------T----TTT-CCTTTAACGCTTCAGTT........................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AGT--------------------------------------------------------------------GATCGATCGTGCCAGCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000010000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGCAA---CA---------ACTCATGCGAG..2211.001001000000000000000000000000000000000000000000000000000000000000
..............CGCAGCTCGTCGGTGACGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TGAGT--------------------------------------------------------------------GATCGATCGTGCCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC----A------ACA---------------------------------------GCAGC------A------GTACGGC.............................2011.001000000000000000000000000000000000000100000000000000000000000000
......................................CCCAATAA------TGGGGTAAGTTCAG----------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......CAGTGCGGCGCAGCTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................AGTT--AAGTCT----T--------------AAGTCT----TAAG-----------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................CT----T--------------AAGTCT----TAAG-----------TTAA-------------------------------------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CTGCAAC------------AGC----A------ACA---------------------------------------GCA...................................................19200.051000000000000000001000000000000000000000000000000000000000000000
droMoj3
CGCCGCCAGTGAGACGCAGCTCCTCAGTGACGCCCAGCGTTAATAA------CGGGGTAAGTTTAG----------CCAGGAAATTAA--TAAG------------------------------------------------------------TAACAAC-AAATTAATTG--AAGC------TAGTTAATAATTAAT----------TAGGTTAAGCTTAAGCTAAGAAAAAAAAAAAAAAAGATTGTGAAACTAAATTTATTTAAGTTGC--AGCT---GCAACAACAGAAAACTGAATTTTTTAGATATAATTACACAAATTATTAATAATTATAGATTAAATAATTGAATTGATACTAACAGCAGCAGCACTGCTAACAACAGCAACATGAATCAATTTTTGACTTAAGTTGAGAGTCTTCTACG---------------------------------ATC--AGCA----CACA----------------GTT-----TTCTATTT-TCTATTATTCCTAAGTTAATTTTCATTT--ATTGCTTATGATTTAA-----------GT-----------------------------TGCAACAGC---------------AA------CAGCAAC------------AAC----A------ACAGCCGCC-----------------------------------------------------------G---CA---------GCAGCAGC-AGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAGCAAC------------AAC----A------ACAGCCGCC-----------------------------------------------------------G---CA---------GCA..........2811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAATTTTTGACTTAAGTTGAG.......................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----A------ACAGCCGCC-----------------------------------------------------------G---CA---------GCA..........1830.331100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---------------AA------CAGCAAC------------AAC----A------ACAGCCGC........................................................................................2640.251000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ACAGCCGCC-----------------------------------------------------------G---CA---------GCAGCAGC-A...2240.251100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------AA------CAGCAAC------------AAC----A------AC..............................................................................................19200.051000010
droGri2
CGCCGCCAGTGCGTCGCAGCTCATCGGTGACGCCCAGTCCCAATG------TGGGGGTAAGTGTTG----------C------ACTCC--TCGGTGGCAG-----CC-----CTATAGCTGTAATT--AATTA--------------------TGCGCAAT-CAATTAAGTT--AGTAAG----T--------------AAGCGTTACGTAAG-----------TTAA---G---------------------------------TAAG-CTTTAAGCA---GTG-A--------------------------------------------------GT-------------GATCGATC---------------------------------------------------------------------GATCGTGCATCAACCACAAAAACTCAC-----ACAAACAGA------CACA----------------TTT--CC-TTTTCTTT-T-CTC---GCTTATGTTCATTTTCGTTT--CTCACTTATGATTTTA-----------ATA------ATGCCTCA-------------ATGCAGCTGCAACAAGAACAGCAGCAGCAGCAGCAGCAGC------------TAC----A------GCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAACAACTCAACAGCAACAACTTATACTCCAGCGATCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGC------------TAC----A------GCAGCA..........................................................................................2120.50110
droWil2
CGCCACCAGTTAGACGCAGTTCATCAGTCACACCCAGTCCCAATGCCACCATGGGGGTAAGTAAAATGCCACTTAAC-------------------------------------------------------------------CAAAAAAAACTCACTTC-AAATTAAGTC--AAAC------T---AA-------TTTAGTTT----TAAC------ATAAGC----------------------------------------TTAGTTCTTAAGAT---G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-----TTTGTGTT-T-TTTTATGA---------TTTCATTTT--AT----T----TTTAT-----------TTG-------CAC-------------------CTAAAAAC---------------AA------CACAAAAAACAAAAACTCAAACTTTTAGCCACCACCAACAAAT---------------------------CTTCACTATC---AGCAACAAGCACAGCTAAG---CA---------GCTCCAGTGAGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....ACCAGTTAGACGCAGTTCATCAGTCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100001
dp5
CGCCGCCAGTGCGACGCAGCTCCTCGGTGACACCCAGTCCCAATGCTTCGGTGGGGGTAAGTGTGC----------------------------TTACCGACCGGGCTCCGACCGGCGCTTAGATT--AATGGCT-------------------CTCAAAT-TAATTAAGTT--AGAC------T---AA-------GTTCGGGCCAAGTTAG-----------CCGT--------------------------------------------TTAAGCCTAGAA----------------------------------------------------------------------------------------------------------------------------------------ACTTTCTAGA-------------------------CACTCTAC--------------ACA--------CGAGAGTTGTT-----TCTTG--T-T-GTTTTTGC---------TTTTATTAT--TTTATTTATGATTTAA-----------TTA-------TGC---AACAACAGCACGCGACGCATCTGC---------------AG----------------------------------------------------------------------------------CTGC---AACATAACACGCCGCTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........CGACGCAGCTCCTCGGTGACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
droPer2
TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC-----TTGCATTT-A-GTTGTGGC---------TTTGATTTC--ACATTAGTTGAGATGG-----------GCA-------CAC---A-------------CCGCAGCAGC---------------AG------CAGCAAC------------AAC----A------ACAA----------------------------------------------------------------------------------CCTGGCAACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CGCCGCCAGTCAGACGCAGCTCTTCGGTGACCCCCAGTCCCAATGCCTCGGTTGGGGTAAGTTCC-------------------------------------------------------TAGGAT-----------------------GATATTTTCCTT-TAATTAAGTT--AGCG-T----C------------------------TAAG-----------CCAA---G---------------------------------GTAGCTTCTAAGCCAACGCT-C----------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------ACACCAGGACA----CACACGTACATACTA-TGTGGTCTTTTGTTTGGTTT---CTCTACGC---------TTTTGTTAC--TTCACTTATGATTTAA-----------TTA-------TGC---A-------------ACACAGCTGA---------------AGCAACCGCAGCAGC------------CAG----A------GCACCTGCAC---------------------------CTGCACCAGC------A------GCAGCTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................AGTCCCAATGCCTCGGTTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
....GCCAGTCAGACGCAGCTCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAGC------A------GCAGCTAAG---CA---------GCTCCAGC.....2811.001010000
......CAGTCAGACGCAGCTCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.111000100
droBip1
CGCCGCCAGTCAGACGCAGCTCATCGGTTACCCCCAGTCCCAATGCCTCGGTTGGGGTAAGTTTT--------------------------C----------------------------TAGAATAG-TA-----------------AAATATTTTCCTT-TAATTAAGTT--AGCCAA--------------------------------------------CTAA---G---------------------------------GTAGCTGTTAAGAAAGCTCT-C----------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------ACACCAGGACA----CACACGTACAGACTA-TGTGGTCTTTTGTTTGGTTT---CTCTCTGC---------TTTTGTTTC--TTCACTTATGATTTAA-----------TTA-------TGC---A-------------ACACAGCTGA---------------AGCAACCGCAGCAGC------------CAG----A------GCACCTGCAC---------------------------CTGCACCACC------ACCATCAGCAGCTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotal
No Reads
droKik1
CGCCGCCAGTCAGACGCAGCTCATCGGTGACACCCAGTCCC---GCCTCGGTCGGGGTAAGTTTGT----------C---------CT--CCTACTAC--------------------------------TTACT----ACA--------------CTAAA-TACCTAAGCT--AGTTA---------------------------------------------TTAA---G---------------------------------CTAGTCGTTAAGGC---GT---------------------------------------------------------------------------------------------------------------------------------------------CTCCG-------------------------TACTCTACA-TGGGCCACAAACACA----------------GTC-----TTTGGTTT-C-CTCTAAGC---------TTTTATTCT--TTAACTTATGATTTCA-----------CT-----TAATGC---A-------------ATGCAGCAGC---------------AG------CACCAAT-------------------A------CCAAC---CG---------------------------CAGCAGCAGCAGCACCATAGCTACCAACTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotal
No Reads
droFic1
CGCCGCCAGTGAGACGCAGCTCGTCGGTGACCCCCGGTCCCAACGCCTCGGTCGGGGTGAGTAGAA----------C---------TC--TTAGTTACCC---------------------------------------------ATCAA------GCTCC-CAACTAAGTT--AGCCAGCCAGC------------------------TAGT-----------CTAA---G---------------------------------TTAGTCGCTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------ACACTGGGTCA----CACA----------------GTC-----TTTGGTTT-C-CTCTACGC---------TTTTGTTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCCAC------------AAT----C------ACAAC---CA---------------------------CTGCAGCAGC------AGAATCTGCACCTCAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotal
No Reads
droEle1
CGCCGCCAGTGAGACGCAGTTCGTCGGTAACACCCAGTCCCAATGCCTCGGTCGGGGTAAGTTCAG----------T---------CC--TCAATTATCC-----GC-----------------------------------------------TTATAGC-TGTTTAAGTT--AGCCAC----C------------------------TAAG-----------CTAAGAAG---------------------------------TTAGTCGCTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------ACACTGGGTCA----CACA----------------GTC-----TTTGGTTT-C-CTCTACAC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CACCAACACCAACACCAGCAAC----AGCATCAGCACGCCACT---------------------------CTGCCCCAGC------AGAATCTGCAACTGAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotal
No Reads
droRho1
CGCCGCCAGTGAGACGCAGTTCGTCGGTAACACCCAGTCCCAATGCCTCGGTCGGGGTAAGTTCAG----------C---------CT--TCAGTTAC--------------------------------------------------------CGCCACCCCTATTAAGTT--AGACAC----C------------------------TAAA-----------CTAA---G---------------------------------TTAGTCGCTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------ACACTGGGTCA----CACA----------------GTCT----TTTGGTTT-C-CTCTATAC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTATTATTAATGC---A-------------ACGCAGCTAC---------------AG------CAACAAC------------AAC----A------GCACGCCACA---------------------------CTGCAACAGC------AGAATCTTCAACTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotal
No Reads
droBia1
CGCCGCCAGTGAGACGCAGCTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTAAGTGGAT--------------------CT--TTAATT--------------------------------CTTTAATCTGAACA--------------ATAAC-CAATTAAGTT--AGCCAC--------------------------------------------CTAA---G---------------------------------TTAGTTGCTAAGTC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------ACACTGGGTCA----CACA----------------GTC-----TTTGGTTT-C-CACTATGC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CACCAGCAACCACAACAGCAAC----A------GCACGCCAAT---------------------------CTGCTGCAGC------AGAATCACCAGCTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotal
No Reads
droTak1
CGCCGCCAGTGAGACGCAGCTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTGGGGGTAAGTTGAA----------T---------CT--TTAGCT--------------------------------CTTCTAT----ATA--------------ATAAT-CAATTAAGTGTTAGCTAT----C------------------------TAAA-----------CTAA---G---------------------------------TTAGTTTATAAGTC---GC-------------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------ACA------CA----CACA----------------GTC-----TTTGGTTT-C-CTCTATGC---------TTTTATTCTGTTTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AGCACCAACAGCAAC------------AAG----A------ACA------------------------------------------------------CCACCAGCTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotal
No Reads
droEug1
CGCCGCCAGTGCGACGCAGCTCGTCGGTGACCCCCAGTCCCAATGTCTCGGTCGGGGTGAGTTAAG----------C---------CT--TCAATTAT--------------------------------------------------------CCGCACC-TAGTTAAGTT--AGTAAA----C------------------------TAAA-----------CTAA---G---------------------------------TTAGTTGTTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------ACACGGGGTCA----CACA----------------GTC-----TTTGGTTT-C-CTCTTTGC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTAC---------------AG------CAACAACAACAACAACAACCAC----A------GCACGCAAAT---------------------------TTGCCGCAAC------AAAATCACCAACTAAG---TA---------GCTCCAGCGAGCASizeHit CountTotal NormTotal
No Reads
dm3
CGCCGCCAGTCAGACGCAGTTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTGAGTTAAG----------C---------CT--TCAATTAC--------------------------------------------------------CTACACC-CAATTAAGTT--AGCCAC----T------------------------TAAT-----------CTAA---G---------------------------------CTAGTCGCTAAGCCTGGGTT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------C-----ACTCTGGGTCA----CACA----------------CTC-----TTTGGTTT-C-CTCTATGC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCAAC------------CAC----A------GCACGCGACT---------------------------CTGTCGCAGC------AGAATCACCAACTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........AGACGCAGTTCGTCGGTGACCCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CCCAATGCCTCGGTCGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTCT--TTAACTTATGA................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TAA---G---------------------------------CTAGTCGCTAAGCCTGGGTT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------...................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............CGCAGTTCGTCGGTGACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---------------AG------CAGCAAC------------CAC----A------GCACGCGA........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................CTGGGTT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------C-----ACTCTGGGTCA----..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCAAC------------A.............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGACT---------------------------CTGTCGCAGC------AGAATCAA...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------AG------CAGCAAC------------CAC----A------GCACGCGAC.......................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TGCCTCGGTCGGGGTGAGTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTT-C-CTCTATGC---------TTTTATTC..............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CAGCAAC------------CAC----A------GCACGC..........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCACCAACTAAG---CA---------GC...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AGTCCCAATGCCTCGGTCGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........AGACGCAGTTCGTCGGTGACCCCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAGTTCGTCGGTGACCCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CAGTCAGACGCAGTTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------CAC----A------GCACGCGACT---------------------------CTGT.......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AGTCCCAATGCCTCGGTCGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CCAGTCAGACGCAGTTCGTCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAACTAAG---CA---------GCTCCAGC.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............GCAGTTCGTCGGTGACCCCCAGTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAGTTCGTCGGTGACCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGACGCAGTTCGTCGGTGACCCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----A------GCACGCGACT---------------------------CTGTCGCAGC------AGA........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TAA---G---------------------------------CTAGTCGCTAAGCCTGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAG............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CCCAGTCCCAATGCCTCGGTCGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................CGGTGACCCCCAGTCCCAATGCCTCGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----A------GCACGCGACT---------------------------CTGTCGC....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GTCAGACGCAGTTCGTCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GTCCCAATGCCTCGGTCGGGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CTAAGCCTGGGTT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------C-----ACTC.........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CTAGTCGCTAAGCCTGGGTT-C----------------------------------------------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGACGCAGTTCGTCGGTGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------CTGTCGCAGC------AGAATCACCAACTAAG---C.......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCCCAATGCCTCGGTCGGGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------CTGTCGCAGC------AGAATCACCAACTAAG---........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGACCCCCAGTCCCAATGCCTCGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGCCGCCAGTCAGACGCAGTTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTGAGTTAAG----------C---------CT--TCAACTAC--------------------------------------------------------CTACACC-CAATTAAGTT--AGCCAC----T------------------------TAAT-----------CTAA---G---------------------------------CTAGTCGCTAAGCCTGGGCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------C-----ACTCTGGGTCA----CACA----------------CTC-----TTTGGTTT-C-CTCTATGC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCAAC------------CAC----A------GCACGCGACT---------------------------CTGTCGCAGC------AGAATCACCAACTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...CGCCAGTCAGACGCAGTTCGTCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00201000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------AGAATCACCAACTAAG---CA---------GC...........2511.00100000010000000000
droSec2
CGCCGCCAGTCAGACGCAGTTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTGAGTTAAA----------C---------CT--TCAACTAC--------------------------------------------------------CTACACC-CAATTAAGTT--AGCCAC----T------------------------TAAT-----------CTAA---G---------------------------------CTAGTCGCTAAGCCTGGGCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------C-----ACTCTGGGTCA----CACA----------------CTC-----TTTGGTTT-C-CTCTATGC---------TTTTATTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCAAC------------AAC----A------GCACGCGACT---------------------------CTGTCGCAGC------AGAATCTCCAACTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................AGTTCGTCGGTGACCCCCAGTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
droYak3
CGCCGCCAGTTAGACGCAGTTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTAAGTTAAA----------C---------CTACTTAATTAC--------------------------------------------------------CTACACC-CAACTAAGTT--AGCCAC----A------------------------TAAT-----------ATAA---G---------------------------------GTAGTCGCTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------ACTCTGGGTCA----CACA----------------CTC-----TTTGGTTTTC-TTTTTTGC---------TATTACTCT--TTAACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCAAC------------CAC----A------GCACGCGACT---------------------------CTGTCGCAGC------AGAATCACCAACTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................AGTTCGTCGGTGACCCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
droEre2
CGCCGCCAGTTAGACGCAGTTCGTCGGTGACCCCCAGTCCCAATGCCTCGGTCGGGGTAAGTTAAA----------C---------CT--CCAATTAC--------------------------------------------------------TAAAACC-CCATTAAGTT--AGCCAC----T------------------------TAAT-----------CTAA---G---------------------------------CTAGTCGCTAAGCC---GCT-C----------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------ACTGTGGGTCA----CACA----------------CTC-----TTTGGTTT-C-TTCTACGC---------TTTTATTCT--TTCACTTATGATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGCAAC------------CAC----A------GCACGCGACT---------------------------CTGTCGCAGC------AGAGTCACCAACTAAG---CA---------GCTCCAGCGAGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................CAGTCCCAATGCCTCGGTCGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----A------GCACGCGACT---------------------------CTGTCGCAGC------AGA........................................2511.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCAACTAAG---CA---------GCT..........1811.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAA-----------TTA-------CGC---A-------------ACGCAGCTGC---------------AG------CAGC.............................................................................................................................2911.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAGCAAC------------CAC----A------GCACGC..........................................................................................1811.0010000010

Generated: 05/17/2015 at 04:32 AM