ID:

dvi_2976

 Coordinate:

scaffold_12823:1404803-1404953 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.5 -9.4 -9.4 -9.3

Flybase annnotation

exon [dvir_GLEANR_314:11]; CDS [Dvir\GJ18448-cds]; intron [Dvir\GJ18448-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCTGGCAATCCCTATGCCACCTTGCCGCGCTCCAATGTTGGTCAACAAGGTAAGACGATGACAGCTGACGATGAGTACGAGACACTGTCTCAGTCAGAAGGTGAATGGGTTTAGTCTTGTTACAGTTACAGTTACAGATACAGAAACAGATAGAAGAAGAAAAAACACTCATAAAACTATTAAGTGTGGGCGTGTGATATACAATCTATAAACTCTTTATATATAATATTTATTCTGCGAGTTTTAGCTG
********************************************************************************************************..((......((((....(((.(((.((((.........................................))))..))).)))))))......))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 M047
female body
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 M061
embryo
 SRR060672
9x160_females_carcasses_total
 V053
head
 V116
male body		 SRR060665
9_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060681
Argx9_testes_total
 V047
embryo
 SRR1106723
embryo_12-14h
 SRR060660
Argentina_ovaries_total
.......................................................................................................................................................................................AGTGTGGGCGTGTGATATACA............................................... 21 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............ATGCCACCTTGCCGCGCTCC......................................................................................................................................................................................................................... 20 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................AGGTAAGACGATGACAGCTGACG.................................................................................................................................................................................... 23 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TATGCCACCTTGCCGCGCTCCAAT...................................................................................................................................................................................................................... 24 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............TGCCACCTTGCCGCGCTCCA........................................................................................................................................................................................................................ 20 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................TGCCGCGCTCCAATGTTGGTCAAC............................................................................................................................................................................................................ 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............CTATGCCACCTTGCCGCGCTCCA........................................................................................................................................................................................................................ 23 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......AATCCCTATGCCACCTTGCCGCGCTCC......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................TTGCCGCGCTCCAATGTTGGTCAACA........................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AGTGTGGGCGTGTGATATA................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ACTATTAAGTGTGGGCGTGTGATATACA............................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ACCTTGCCGCGCTCCAATGTTGGTCA.............................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TGTTGGTCAACAAGGTAAGACGATGA............................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TATGCCACCTTGCCGCGCTC.......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................GGTCAACAAGGTAAGACGATGACAGCT........................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GTGAATGGGTTTAGTCCTGTTACAGT............................................................................................................................ 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................AATGGGTTTAGTCTTGTTACA.............................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAAGTGTGGGCGTGTGATA................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GTTGGTCAACAAGGTAAG.................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................ATGACAGCTGACGATGAGTACGAGACA...................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GCCGCGCTCCAATGTTGGTC............................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................ACAGCTGACGATGAGTACGAGACACT.................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CCAATGTTGGTCAACAAGATGAGT................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............TATGCCACCTTGCCGCGCTCCA........................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GATACAGAAACAGATAGAA............................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............TATGCCACCTTGCCGCGCT........................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CTTGCCGCGCTCCAATGTTGGTCAACA........................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ACAGAAACAGATAGAAGAAGA.......................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TACAGATACAGAAACAGATAGAAGAA............................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AATATTTATTCTGCGAGTTTTAGCT. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GTGTGGGCGTGTGATATACAA.............................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........ATCCCTATGCCACCTTGCCGCGCTCCAA....................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTGGTCAACAAGGTAAGACGATG.............................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GCGCTCCAATGTTGGTCAACA........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................TTGCCGCGCTCCAATGTTGGCCA.............................................................................................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............ATGACACCTTGCCGCGCTCCA........................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CACCTTGCCGCGCTCCAAT...................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................ACCTTACCGCGCTCCAATGTTGGT................................................................................................................................................................................................................ 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............ATGCCACCTTGCCGCGCTCCAATGTT................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CTTGCCGCGCTCCAATGTTGGTCAAC............................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................AGACACTGTCTCAGTCAGAAGGTGAA................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................CCTTGCCGCGCTCCAATGTTGGT................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AATCCCTATGCCACCTTGCCGC.............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................ATTTATTCTGCGAGTTTTAGCT. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAGGTGAATGGGTTTAGT....................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGCCGCGCTCCAATGTTGGTCA.............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GTCAACAAGGTAAGACGATGACAGC......................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TTGCCGCGCTCCAATGTTGGTCAAC............................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............ATGCCACCTTGCCGCGCTC.......................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CCTTGCCGCGCTCCAATGTTGGTCAA............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CGATGACAGCTGACGATGAGTA............................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TTAGTCTTGTTACAGTTACAGTTA.................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................ACCTTGCCGCGCTCCAATGTTGGTCAAC............................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAGTGTGGGCGTGTGATATACAAT............................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................TTGCCGCGCTCCAATGTTGGTCA.............................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GCCGCGCTCCAATGTTGGTCAACA........................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............ATGCCACCTTGCCGCGCTCCA........................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AATATTTATTCTGCGAGT........ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............TGCCACCTTGCCGCGCTCCC........................................................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......AATCCCTATGCCACCTTGCCGCGCTC.......................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TAAGTGTGGGCGTGTGATAT.................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGACGATGACAGCTGACGATGA................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............CTATGCCACCTTGCCGCGCTCCAAT...................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................AGGTGAATGGGTTTAGTCTTGTTACA.............................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CTCATAAAACTATTAAGTGTGTGC........................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TAAGTGTGGGCGTGTGATATACA............................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................GATACAGAAACAGATAGAAGAAGAAAA....................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CAGATACAGAAACAGATAG................................................................................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AAGGTAAGACGATTA............................................................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................CCCGCGCTACAATGTAGGT................................................................................................................................................................................................................ 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TGTGGGCGTGTGATATCGAT.............................................. 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................AAACGGATGGAAGTAGAAAA....................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCGACCGTTAGGGATACGGTGGAACGGCGCGAGGTTACAACCAGTTGTTCCATTCTGCTACTGTCGACTGCTACTCATGCTCTGTGACAGAGTCAGTCTTCCACTTACCCAAATCAGAACAATGTCAATGTCAATGTCTATGTCTTTGTCTATCTTCTTCTTTTTTGTGAGTATTTTGATAATTCACACCCGCACACTATATGTTAGATATTTGAGAAATATATATTATAAATAAGACGCTCAAAATCGAC
***************************************************..((......((((....(((.(((.((((.........................................))))..))).)))))))......))******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060670
9_testes_total
 V053
head
 SRR060668
160x9_males_carcasses_total
 SRR1106729
mixed whole adult body
 SRR060667
160_females_carcasses_total
 SRR060656
9x160_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 V116
male body
................CGGTTGAGCGGCGCGAGGTT....................................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................GTCAGTCTTCCACTTACCCAA........................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................TACAACCAGTAGTTCCCTT..................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................TATCATCTTCCTTTTTGTGAAT............................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.....................................................TCTGATACTGTCTACTGGTA.................................................................................................................................................................................. 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................ATGGGTTAGATATTTGAGTA................................. 20 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................CAGAGTCAGGGTTCCAC................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0
.............................................................................TGGTCTGTGACAGAGGC............................................................................................................................................................. 17 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0
......................................................................................ACAGAGTCAGGGTTCCACC.................................................................................................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................TCTGTGTCTTTGTCTATC................................................................................................. 18 1 11 0.09 1 0 0 0 0 0 0 1 0 0 0
................CGGTGGAATGGCGAGAGGGT....................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0
............................................TTGTTCAATGCTGCCACTG............................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................TGGTCTGTGACAGAGGCT............................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................ATAGATAGTTGAGGAATATA............................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12823:1404753-1405003 + dvi_2976 CGCT------GGC---------------------AATCCCTATGCCACCTTGCCGCGCTCCAATGTTGGTCAACAAGGTAAGAC-GAT---------------GACAGCTGACGATGAGTACGAGACA---CTGTCTCAGTCA---GAAGGTGAATGGGTTTAGTCTTGTTACAGTTACAGTTACAGATACAGAAACAGATAGA---AGAAGA------------AAAAACACTCATAAAA-CTAT-TAAGTGTGGGCGTGTGATAT--ACAATCTATAAA--CTCTTTATATATAATATTTATTC------------------------TGCGAGTTTTAGCTG
droMoj3 scaffold_6496:495723-495936 - AG------GTGGC---------------------AACGCCTACGCCACTTTGCCACGCTCGAATGTTGGTCAACAAGGTAAG-ATGAT---------GACGACGACAGCTGATGATGAGT------GT---TTGTCGCAGTCA---GAAGGTGAATGGGTTTAGAA--------------------------------------ACCAGA-----AGC------------------------CA----GAGAG----C---TGATAT--GCACCCCTCTCG--CTCTCTCTTTGTCTCACTCTCTCTTCTGTCACCCTCTGTCTCTCTCTGGCAAGTGTTAGCTG
droGri2 scaffold_15245:5841575-5841786 - CGCT------GGC---------------------AATCCGTACGCAACTTTGCCACGCACCAATGTTGGTCAACAAGGTAAG----------------ACGATGACGGCTGACGATGAGT------CATATCAGTCTCTGTCA---GAAGGTGAATGGGTTTAGTC------------------------------CAGATACAACAAGA-----AGCATACTCATG--T-ACTCAAGAAA-CTACCTACTTATGGGCGTGTGATATAT-ACAACTTACATATACAATT----------------A------------------------TCCAAGT-TTAGCAG
droWil2 scf2_1100000004512:925647-925839 + AGCT------GGC---------------------AATCCTTATGCCACTTTGCCCAGATCGAATGTGGGTCAACAAGGTAAGGCTGATGAC---TATGATGATGATG----------AT-------------TA--TCTGTCAGGTGAAGGTGAATGGGTTTAGTTT-----------------------------TACATACAAAAAG---CGAA--AAAAACAAA--A-AACCAAAAAAACA----AAGAGAAAGC--GTGATAAATGAAAACTTAAAT--ACAATT----------------------------------------------------GCAA
dp5 3:19523554-19523652 + AGCGGCCGGTGGC---------------------AACCCCTATGCCACCCTGCCCCGCACCAATGTGGGCCATCAAGGTAAGGCTGATTCG---CCCGA----------------------------------------TTCG---GAGGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_38:400626-400710 - TACAGGTA------------------------------------------------------------------CAGGTACAGGTGCAGGT---------A-----------------------------------------------------------------------------------------------CAGATACA---GAAGGT------------ACACATATACAAGAGA-GCA------------------GTAC--CCGAACTATAAT--CTCTGG----------------------------------------------------GTAT
droAna3 scaffold_13266:12539217-12539325 + CGCCCCCGGCGGTA------------------ACAACCCGTACGCCACTTTGCCCCGCAGCAATGTCGGCCAACAAGGTAAGGCTGCC---------GACAACGACG----------AC-------------TG--TCTGTCG---GAAGGTGAATGGGTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396372:39111-39219 + CGCCCCCGGCGGCA------------------ACAACCCGTACGCCACATTGCCCCGCAGCAATGTCGGCCAACAAGGTAAGGCTGCC---------GACAACGACG----------AC-------------TG--TCTGTCG---GAAGGTGAATGGGTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302682:1836140-1836247 - CGCTCCCGGTGGCC------------------AGAATCCCTATGCCACCCTGCCTCGCAGCAATGCTGGCCAACAAGGTAAGGCTGA------------TGACAACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453809:155777-155896 - CGCTCCCGGCAACAACA------ACATCAACAACAACCCGTACGCCACTTTGCCCCGCAGCAATGTCGGCCAACAAGGTAAGGCTGA------------TGACGACG----------AC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491107:640809-640937 - CGCTCCCGGCGGCAACAACAACTTCAACAACAACAACGCGTACGCCACTTTGCCCCGCAGCAATGTCGGCCAACAAGGTAAGGCTGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAGGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779911:451234-451353 + CGCTCCCGGCGGCAACA------TCAACAACAACAACCCGTACGCCACTTTGCCCCGCAGCAACGTTGGCCAACAAGGTAAGGCTGA------------TGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302292:3997369-3997479 + CGCCCCCGGCGGCA------------------ACAACCCGTACGCCACGCTGCCCCGCAGCAATGTTGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415241:18939-19052 + CGCTCCCGGTGGCA------------------ACAACCCCTACGCCACCCTGTCCCGCAGCAATGTCGGCCAACAAGGTAAGGATGATG------CCGATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409672:560276-560386 - CGCTCCCGGTGGCA------------------ACAATCCGTATGCCACTCTGCCACGCAGCAATGTCGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:11661269-11661379 - CGCTCCCGGTGGCC------------------AAAACCCGTACGCCACCCTGCCCCGCAGCAATGTGGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:12327416-12327526 - CGCTCCCGGTGGCC------------------AAAACCCCTACGCCACCCTGCCCCGCAGCAATGTGGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1:9154859-9154969 - CGCTCCCGGTGGCC------------------AAAACCCGTACGCCACCCTGCCCCGCAGCAATGTGGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:17325906-17326019 + CG------GTGGCC------------------AGAACCCGTACGCCACCCTGCCACGCAGCAATGTGGGCCAACAAGGTAAGGATGATAATGATGATGATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:14201585-14201695 + CGCTCCCGGTGGCC------------------AAAACCCGTACGCCACCCTGCCCCGCAGCAATGTGGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGCT------GGC---------------------AATCCCTATGCCACCTTGCCGCGCTCCAATGTTGGTCAACAAGGTAAGAC-GAT---------------GACAGCTGACGATGAGTACGAGACA---CTGTCTCAGTCA---GAAGGTGAATGGGTTTAGTCTTGTTACAGTTACAGTTACAGATACAGAAACAGATAGA---AGAAGA------------AAAAACACTCATAAAA-CTAT-TAAGTGTGGGCGTGTGATAT--ACAATCTATAAA--CTCTTTATATATAATATTTATTC------------------------TGCGAGTTTTAGCTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................AGTGTGGGCGTGTGATAT--ACA.........................................................................2113.003002000000000000000100000000000000000000000000000000000000000000
.........................................ATGCCACCTTGCCGCGCTCC............................................................................................................................................................................................................................................................................................2013.003000000000000000002100000000000000000000000000000000000000000000
...........................................................................AGGTAAGAC-GAT---------------GACAGCTGACG.......................................................................................................................................................................................................................................2312.002001000000000000000100000000000000000000000000000000000000000000
........................................TATGCCACCTTGCCGCGCTCCAAT.........................................................................................................................................................................................................................................................................................2412.002001000000000000000000010000000000000000000000000000000000000000
..........................................TGCCACCTTGCCGCGCTCCA...........................................................................................................................................................................................................................................................................................2012.002000000000000000011000000000000000000000000000000000000000000000
..................................................TGCCGCGCTCCAATGTTGGTCAAC...............................................................................................................................................................................................................................................................................2412.002002000000000000000000000000000000000000000000000000000000000000
.......................................CTATGCCACCTTGCCGCGCTCCA...........................................................................................................................................................................................................................................................................................2312.002001000000000000000000100000000000000000000000000000000000000000
..................................AATCCCTATGCCACCTTGCCGCGCTCC............................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
.................................................TTGCCGCGCTCCAATGTTGGTCAACA..............................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AGTGTGGGCGTGTGATAT--A...........................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................A-CTAT-TAAGTGTGGGCGTGTGATAT--ACA.........................................................................2811.001000000000000000000010000000000000000000000000000000000000000000
..............................................ACCTTGCCGCGCTCCAATGTTGGTCA.................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
...............................................................TGTTGGTCAACAAGGTAAGAC-GAT---------------GA................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
........................................TATGCCACCTTGCCGCGCTC.............................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
...................................................................GGTCAACAAGGTAAGAC-GAT---------------GACAGCT...........................................................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................AATGGGTTTAGTCTTGTTACA...........................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................T-TAAGTGTGGGCGTGTGATA...............................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
................................................................GTTGGTCAACAAGGTAAG.......................................................................................................................................................................................................................................................................1811.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................AT---------------GACAGCTGACGATGAGTACGAGACA---......................................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
...................................................GCCGCGCTCCAATGTTGGTC..................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................ACAGCTGACGATGAGTACGAGACA---CT....................................................................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
........................................TATGCCACCTTGCCGCGCTCCA...........................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
..........................................................................................................................................................................................GATACAGAAACAGATAGA---A.........................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
........................................TATGCCACCTTGCCGCGCT..............................................................................................................................................................................................................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
................................................CTTGCCGCGCTCCAATGTTGGTCAACA..............................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................ACAGAAACAGATAGA---AGAAGA------------........................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................TACAGATACAGAAACAGATAGA---AGAA......................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AATATTTATTC------------------------TGCGAGTTTTAGCT.2511.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GTGTGGGCGTGTGATAT--ACAA........................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
...................................ATCCCTATGCCACCTTGCCGCGCTCCAA..........................................................................................................................................................................................................................................................................................2811.001000000000000000000010000000000000000000000000000000000000000000
.................................................................TTGGTCAACAAGGTAAGAC-GAT---------------G.................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
......................................................GCGCTCCAATGTTGGTCAACA..............................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.............................................CACCTTGCCGCGCTCCAAT.........................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.........................................ATGCCACCTTGCCGCGCTCCAATGTT......................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
................................................CTTGCCGCGCTCCAATGTTGGTCAAC...............................................................................................................................................................................................................................................................................2611.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................AGACA---CTGTCTCAGTCA---GAAGGTGAA..............................................................................................................................................................................................2611.001000000000000000000000010000000000000000000000000000000000000000
...............................................CCTTGCCGCGCTCCAATGTTGGT...................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..................................AATCCCTATGCCACCTTGCCGC.................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................ATTTATTC------------------------TGCGAGTTTTAGCT.2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................AAGGTGAATGGGTTTAGT....................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
..................................................TGCCGCGCTCCAATGTTGGTCA.................................................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
....................................................................GTCAACAAGGTAAGAC-GAT---------------GACAGC............................................................................................................................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
.................................................TTGCCGCGCTCCAATGTTGGTCAAC...............................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.........................................ATGCCACCTTGCCGCGCTC.............................................................................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
...............................................CCTTGCCGCGCTCCAATGTTGGTCAA................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................C-GAT---------------GACAGCTGACGATGAGTA................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TTAGTCTTGTTACAGTTACAGTTA.................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
..............................................ACCTTGCCGCGCTCCAATGTTGGTCAAC...............................................................................................................................................................................................................................................................................2811.001000000000000000000010000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AAGTGTGGGCGTGTGATAT--ACAAT.......................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.................................................TTGCCGCGCTCCAATGTTGGTCA.................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...................................................GCCGCGCTCCAATGTTGGTCAACA..............................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................ATGCCACCTTGCCGCGCTCCA...........................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AATATTTATTC------------------------TGCGAGT........1811.001000000000000001000000000000000000000000000000000000000000000000
..........................................TGCCACCTTGCCGCGCTCCC...........................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
..................................AATCCCTATGCCACCTTGCCGCGCTC.............................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TAAGTGTGGGCGTGTGATAT--............................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................GTAAGAC-GAT---------------GACAGCTGACGATGA...................................................................................................................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
.......................................CTATGCCACCTTGCCGCGCTCCAAT.........................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................AGGTGAATGGGTTTAGTCTTGTTACA...........................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TAAGTGTGGGCGTGTGATAT--ACA.........................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................GATACAGAAACAGATAGA---AGAAGA------------AAA.....................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................CAGATACAGAAACAGATAG..............................................................................................................................................1920.501000000000000000001000000000000000000000000000000000000000000000
droMoj3
AG------GTGGC---------------------AACGCCTACGCCACTTTGCCACGCTCGAATGTTGGTCAACAAGGTAAG-ATGAT---------GACGACGACAGCTGATGATGAGT------GT---TTGTCGCAGTCA---GAAGGTGAATGGGTTTAGAA--------------------------------------ACCAGA-----AGC------------------------CA----GAGAG----C---TGATAT--GCACCCCTCTCG--CTCTCTCTTTGTCTCACTCTCTCTTCTGTCACCCTCTGTCTCTCTCTGGCAAGTGTTAGCTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................ACGCCACTTTGCCACGCTCG............................................................................................................................................................................................................................................................................................2011.001000001
.............................................................................................................................................................................................................CCAGA-----AGC------------------------CA----GAGAG----C---TGATA...............................................................................2111.001000001
...........................................................................................................................................GTCA---GAAGGTGAATGGGTTTAGA....................................................................................................................................................................................2311.001000001
............................................................GAATGTTGGTCAACAAGG...........................................................................................................................................................................................................................................................................1811.001100000
.......................................CTACGCCACTTTGCCACGCTCGA...........................................................................................................................................................................................................................................................................................2311.001100000
..........................................................................................................AGCTGATGATGAGT------GT---TTGTCGCA..............................................................................................................................................................................................................2411.001100000
........................................................GCTCGAATGTTGGTCAACA..............................................................................................................................................................................................................................................................................1911.001100000
..................................AACGCCTACGCCACTTTGCCACGCT..............................................................................................................................................................................................................................................................................................2511.001100000
...................................................................................................................................................................GAA--------------------------------------ACCAGA-----AGC------------------------CA----GAGAG----C---....................................................................................2011.001000001
..........GGC---------------------AACGCCTACGCCACTTTGCCACGCT..............................................................................................................................................................................................................................................................................................2811.001100000
.................................................................................................GACGACGACAGCTGATGATGAGT------GT---......................................................................................................................................................................................................................2511.001000001
....................................................................................................GACGACAGCTGATGATGAGT------GT---TTGT..................................................................................................................................................................................................................2611.001000001
......................................................................CAACAAGGTAAG-ATGAT---------GACG....................................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................TAGAA--------------------------------------ACCAGA-----AGC------------------------CA----GAGAG----C---TGAT................................................................................2611.001000001
.....................................................................................................ACGACAGCTGATGATGAGT------GT---......................................................................................................................................................................................................................2111.001000001
..............................................................................................................GATGATGAGT------GT---TTGTCGC...............................................................................................................................................................................................................1911.001000001
droGri2
CGCT------GGC---------------------AATCCGTACGCAACTTTGCCACGCACCAATGTTGGTCAACAAGGTAAG----------------ACGATGACGGCTGACGATGAGT------CATATCAGTCTCTGTCA---GAAGGTGAATGGGTTTAGTC------------------------------CAGATACAACAAGA-----AGCATACTCATG--T-ACTCAAGAAA-CTACCTACTTATGGGCGTGTGATATAT-ACAACTTACATATACAATT----------------A------------------------TCCAAGT-TTAGCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGCT------GGC---------------------AATCCTTATGCCACTTTGCCCAGATCGAATGTGGGTCAACAAGGTAAGGCTGATGAC---TATGATGATGATG----------AT-------------TA--TCTGTCAGGTGAAGGTGAATGGGTTTAGTTT-----------------------------TACATACAAAAAG---CGAA--AAAAACAAA--A-AACCAAAAAAACA----AAGAGAAAGC--GTGATAAATGAAAACTTAAAT--ACAATT----------------------------------------------------GCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................TGCCCAGATCGAATGTGG.....................................................................................................................................................................................................................................................................................1812.00201010
...................................................................................................................................................................................................................................................A----AAGAGAAAGC--GTGATAAATGAAAACT.....................................................................2711.00100100
........................................................................................................................................................................................................................................................AAGAGAAAGC--GTGATAAATGAAAACT.....................................................................2611.00100100
..............................................................ATGTGGGTCAACAAGGTAAGGCT....................................................................................................................................................................................................................................................................2311.00100001
.....................................CCTTATGCCACTTTGCCCAGATCG............................................................................................................................................................................................................................................................................................2411.00100100
.............................................CACTTTGCCCAGATCGAATGTG......................................................................................................................................................................................................................................................................................2211.00100010
...............................................................................................................................................GGTGAAGGTGAATGGGTTT.......................................................................................................................................................................................1911.00100100
...........GC---------------------AATCCTTATGCCACTTTGCC...................................................................................................................................................................................................................................................................................................2211.00100100
....................................................................................................GATGATG----------AT-------------TA--TCTGTCAGGTGAAGGT.................................................................................................................................................................................................2711.00100010
...............................................................TGTGGGTCAACAAGGTAAGGCT....................................................................................................................................................................................................................................................................2211.00100100
..............................................................................................................................................................................................................................................AAAACA----AAGAGAAAGC--GTGAT................................................................................2111.00101000
..........................................................................................................................................................................................................................................................GAGAAAGC--GTGATAAATGAAA........................................................................2111.00100100
..............................................ACTTTGCCCAGATCGAATGTG......................................................................................................................................................................................................................................................................................2111.00101000
........................................................................................................................................................................................................................................................AAGAGAAAGC--GTGATAAATGAAAACTT....................................................................2711.00100100
...............................................CTTTGCCCAGATCGAATGTGG.....................................................................................................................................................................................................................................................................................2111.00100001
......................................................................................ATGAC---TATGATGATGATG----------A...................................................................................................................................................................................................................................19120.08100001
dp5
AGCGGCCGGTGGC---------------------AACCCCTATGCCACCCTGCCCCGCACCAATGTGGGCCATCAAGGTAAGGCTGATTCG---CCCGA----------------------------------------TTCG---GAGGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................CTATGCCACCCTGCCCCGCA..............................................................................................................................................................................................................................................................................................2012.0020200000000
.........................................ATGCCACCCTGCCCCGCACC............................................................................................................................................................................................................................................................................................2011.0010001000000
.................................................CTGCCCCGCACCAATGTGGGCC..................................................................................................................................................................................................................................................................................2211.0010001000000
.........................................ATGCCACCCTGCCCCGCACCAA..........................................................................................................................................................................................................................................................................................2211.0010001000000
.........................................................................................CG---CCCGA----------------------------------------TTCG---GAGGGTGAATGGGTC........................................................................................................................................................................................2611.0010000001000
......................................................CCGCACCAATGTGGGCCATC...............................................................................................................................................................................................................................................................................2011.0010001000000
...........................................................................AGGTAAGGCTGATTCG---CCCG.......................................................................................................................................................................................................................................................2011.0010100000000
.........................................ATGCCACCCTGCCCCGCA..............................................................................................................................................................................................................................................................................................1811.0010001000000
..............................................................................................................................................G---GAGGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111.0010100000000
.GCGGCCGGTGGC---------------------AACCCC.................................................................................................................................................................................................................................................................................................................1811.0010001000000
........................................TATGCCACCCTGCCCCGCACCAA..........................................................................................................................................................................................................................................................................................2311.0010100000000
...............................................................................................CCGA----------------------------------------TTCG---GAGGGTGAATGGGTCTAG.....................................................................................................................................................................................2611.0010000001000
AGCGGCCGGTGGC---------------------AACCCC.................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
TACAGGTA------------------------------------------------------------------CAGGTACAGGTGCAGGT---------A-----------------------------------------------------------------------------------------------CAGATACA---GAAGGT------------ACACATATACAAGAGA-GCA------------------GTAC--CCGAACTATAAT--CTCTGG----------------------------------------------------GTATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CGCCCCCGGCGGTA------------------ACAACCCGTACGCCACTTTGCCCCGCAGCAATGTCGGCCAACAAGGTAAGGCTGCC---------GACAACGACG----------AC-------------TG--TCTGTCG---GAAGGTGAATGGGTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................TTGCCCCGCAGCAATGTCGGCC..................................................................................................................................................................................................................................................................................2215.005500000
..................................................TGCCCCGCAGCAATGTCGGCC..................................................................................................................................................................................................................................................................................2114.004400000
.................................................TTGCCCCGCAGCAATGTCGGCCAACA..............................................................................................................................................................................................................................................................................2613.003300000
....................................................................................................................................TG--TCTGTCG---GAAGGTGAATGGGTCTA......................................................................................................................................................................................2612.002100001
..............................................ACTTTGCCCCGCAGCAATGTCGGCCA.................................................................................................................................................................................................................................................................................2612.002200000
...............................................CTTTGCCCCGCAGCAATGTCGGCCAACA..............................................................................................................................................................................................................................................................................2812.002200000
...............................................CTTTGCCCCGCAGCAATGTCGGCCA.................................................................................................................................................................................................................................................................................2512.002000002
................................................................................AGGCTGCC---------GACAACGACG----------AC-------------T....................................................................................................................................................................................................................2111.001100000
.................................................TTGCCCCGCAGCAATGTCGGCCAAC...............................................................................................................................................................................................................................................................................2511.001100000
...............................................................TGTCGGCCAACAAGGTAAGGC.....................................................................................................................................................................................................................................................................2111.001000100
...................................................GCCCCGCAGCAATGTCGGC...................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................G--TCTGTCG---GAAGGTGAATGGGTCTA......................................................................................................................................................................................2511.001100000
.......................................................................................................GACG----------AC-------------TG--TCTGTCG---GAAGGT.................................................................................................................................................................................................2111.001100000
.................................................TTGCCCCGCAGCAATGTCGGCCAACAAG............................................................................................................................................................................................................................................................................2811.001100000
........................................................GCAGCAATGTCGGCCAAC...............................................................................................................................................................................................................................................................................1811.001100000
..........................................................................................................G----------AC-------------TG--TCTGTCG---GAAGGTGAATGGGTCT.......................................................................................................................................................................................2811.001000010
.............A------------------ACAACCCGTACGCCACTTTGCCCC.................................................................................................................................................................................................................................................................................................2511.001100000
....................................................................................TGCC---------GACAACGACG----------AC-------------TG--TC...............................................................................................................................................................................................................2011.001100000
......................................CGTACGCCACTTTGCCCCGCA..............................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................AACAAGGTAAGGCTGCC---------G.......................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................GACG----------AC-------------TG--TCTGTCG---GAAGGTGAATGGG..........................................................................................................................................................................................2811.001000010
...........................................................................................................................................GTCG---GAAGGTGAATGGGTCTA......................................................................................................................................................................................2111.001100000
........................................................................ACAAGGTAAGGCTGCC---------GACA....................................................................................................................................................................................................................................................2011.001100000
...........................................................................AGGTAAGGCTGCC---------GACAACG.................................................................................................................................................................................................................................................2011.001100000
.......................................................................................................GACG----------AC-------------TG--TCTGTCG---GAAGGTGA...............................................................................................................................................................................................2311.001000010
...................................................GCCCCGCAGCAATGTCGGCCAACA..............................................................................................................................................................................................................................................................................2411.001100000
...................................ACCCGTACGCCACTTTGCCCC.................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................CTGTCG---GAAGGTGAATGGGTCT.......................................................................................................................................................................................2211.001100000
.............................................................................GTAAGGCTGCC---------GACAACGACG----------....................................................................................................................................................................................................................................2111.001100000
...............................................................................AAGGCTGCC---------GACAACGAC...............................................................................................................................................................................................................................................1811.001100000
...................................................GCCCCGCAGCAATGTCGGCC..................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................GGCTGCC---------GACAACGACG----------AC-------------TG--TC...............................................................................................................................................................................................................2311.001100000
................................ACAACCCGTACGCCACTTTGC....................................................................................................................................................................................................................................................................................................2111.001100000
....................................................CCCCGCAGCAATGTCGGCC..................................................................................................................................................................................................................................................................................1911.001100000
..........................................................................AAGGTAAGGCTGCC---------GACAACGA................................................................................................................................................................................................................................................2211.001100000
.....................................................................................................ACGACG----------AC-------------TG--TCTGTCG---GAAGGT.................................................................................................................................................................................................2311.001000010
.............................................................AATGTCGGCCAACAAGGTAA........................................................................................................................................................................................................................................................................2011.001100000
.....................................CCGTACGCCACTTTGCCCCGCAGCAAA.........................................................................................................................................................................................................................................................................................2711.001100000
.....................................................................................................ACGACG----------AC-------------TG--TCTGTCG---GAAGGTGA...............................................................................................................................................................................................2511.001000001
..CCCCCGGCGGTA------------------ACAACCCGTACGCCACT........................................................................................................................................................................................................................................................................................................2911.001100000
.......................................................................AACAAGGTAAGGCTGCC---------GACA....................................................................................................................................................................................................................................................2111.001100000
.......................................GTACGCCACTTTGCCCCGCA..............................................................................................................................................................................................................................................................................................2011.001100000
.......................................................CGCAGCAATGTCGGCCAACAAGGTAA........................................................................................................................................................................................................................................................................2611.001100000
.................................................TTGCCCCGCAGCAATGTCGGCCA.................................................................................................................................................................................................................................................................................2311.001100000
..................................................TGCCCCGCAGCAATGTCGGC...................................................................................................................................................................................................................................................................................2011.001100000
...................................ACCCGTACGCCACTTTGCCCCG................................................................................................................................................................................................................................................................................................2211.001100000
...........................................................................AGGTAAGGCTGCC---------GACAACGAC...............................................................................................................................................................................................................................................2211.001100000
..................................................................................GCTGCC---------GACAACGACG----------AC-------------TG--TC...............................................................................................................................................................................................................2211.001100000
...................................................GCCCCGCAGCAATGTCGGCCA.................................................................................................................................................................................................................................................................................2111.001100000
droBip1
CGCCCCCGGCGGCA------------------ACAACCCGTACGCCACATTGCCCCGCAGCAATGTCGGCCAACAAGGTAAGGCTGCC---------GACAACGACG----------AC-------------TG--TCTGTCG---GAAGGTGAATGGGTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGCTCCCGGTGGCC------------------AGAATCCCTATGCCACCCTGCCTCGCAGCAATGCTGGCCAACAAGGTAAGGCTGA------------TGACAACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGCTCCCGGCAACAACA------ACATCAACAACAACCCGTACGCCACTTTGCCCCGCAGCAATGTCGGCCAACAAGGTAAGGCTGA------------TGACGACG----------AC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGCTCCCGGCGGCAACAACAACTTCAACAACAACAACGCGTACGCCACTTTGCCCCGCAGCAATGTCGGCCAACAAGGTAAGGCTGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAGGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGCTCCCGGCGGCAACA------TCAACAACAACAACCCGTACGCCACTTTGCCCCGCAGCAACGTTGGCCAACAAGGTAAGGCTGA------------TGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGCCCCCGGCGGCA------------------ACAACCCGTACGCCACGCTGCCCCGCAGCAATGTTGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGCTCCCGGTGGCA------------------ACAACCCCTACGCCACCCTGTCCCGCAGCAATGTCGGCCAACAAGGTAAGGATGATG------CCGATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CGCTCCCGGTGGCA------------------ACAATCCGTATGCCACTCTGCCACGCAGCAATGTCGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CGCTCCCGGTGGCC------------------AAAACCCGTACGCCACCCTGCCCCGCAGCAATGTGGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................CGTACGCCACCCTGCCCCGCAGCAA..........................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCTCCCGGTGGCC------------------AAAACCC..................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGCTCCCGGTGGCC------------------AAAACCC..................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGCTCCCGGTGGCC------------------AAAACC...................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ACGCCACCCTGCCCCGCAGCAAT.........................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AGGTAAGGATGAT---------GATGAC..................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.GCTCCCGGTGGCC------------------AAAAC....................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................ACCCTGCCCCGCAGCAATG........................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GTGGGCCAACAAGGTAAGGAT....................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000
..................................................................................................................................................GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GGCC------------------AAAACCCGTACGCCACC........................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CGCAGCAATGTGGGCCAACAA.............................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCTCCCGGTGGCC------------------AAAACC...................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GCCAACAAGGTAAGGATGAT---------G.......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................GCCAACAAGGTAAGGATGAT---------GAT.....................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................GCCACCCTGCCCCGCAGCAATG........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CTCCCGGTGGCC------------------AAAACC...................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TGCCCCGCAGCAATGTGGGCC..................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CCCGGTGGCC------------------AAAACCCGTA...............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CA---GAAGGTGAATGGGTCT.......................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ACGCCACCCTGCCCCGCAGCA...........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GAT---------GATGACGACG----------GC-------------TG--TCTGTCA---G......................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AGGTAAGGATGAT---------GATGACGA................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................................T---------GATGACGACG----------GC-------------TG--TCTGTCA---GAA....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GAT---------GATGACGACG----------GC-------------TG--TCT..............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CCCGGTGGCC------------------AAAACCCG.................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CGCCACCCTGCCCCGCAGCAATGTGGGC...................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AT---------GATGACGACG----------GC-------------TG--TCTGT............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................AGCAATGTGGGCCAACAAG............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................ACCCTGCCCCGCAGCAATGTGGGCCAA................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GCCACCCTGCCCCGCAGC............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................ACAAGGTAAGGATGAT---------GA......................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................AATGTGGGCCAACAAGGTC.........................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GTACGCCACCCTGCCCCGC...............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CGCAGCAATGTGGGCCAACAAGG...........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................T---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTG................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................CAACAAGGTAAGGATGAT---------GATGACGA................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GCAATGTGGGCCAACAAG............................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TAAGGATGAT---------GATGACGACG----------GC-------------TG--T................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................GAT---------GATGACGACG----------GC-------------TG--T................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
........................................................GCAGCAATGTGGGCCAACAA.............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GCCACCCTGCCCCGCAGCAAT.........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CGACG----------GC-------------TG--TCTGTCA---GAA....................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AGGTAAGGATGAT---------GATGACGACG----------....................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AACAAGGTAAGGATGAT---------GATG....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................ATGTGGGCCAACAAGGTAAGGATGA..................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................GTACGCCACCCTGCCCCGCAGCAAT.........................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................AAGGTGAATGGGTCTAGT....................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GAT---------GATGACGACG----------GC-------------TG--TCTG.............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.......................................................................................T---------GATGACGACG----------GC-------------TG--TCT..............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CG----------GC-------------TG--TCTGTCA---GAAGGTG................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CTCCCGGTGGCC------------------AAAACCCGTA...............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CTCCCGGTGGCC------------------AAAACCCGTACG.............................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GAAGGTGAATGGGTCTAGT....................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................CGCAGCAATGTGGGCCAACA..............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TGCCCCGCAGCAATGTGGGCCAACA..............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAA..............................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AGGTAAGGATGAT---------GATGACGAG...............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GC-------------TG--TCTGTCA---GAAGGTGAAT.............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................CCCGTACGCCACCCTGCCCCGCA..............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CCCGGTGGCC------------------AAAACCCGT................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TAAGGATGAT---------GATGACGAC...............................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................GGTAAGGATGAT---------GATC....................................................................................................................................................................................................................................................1630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGCTCCCGGTGGCC------------------AAAACCCCTACGCCACCCTGCCCCGCAGCAATGTGGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................GATGACGACG----------GC-------------TG--TCTGTCA---GA.....................................................................................................................................................................................................2311.00100010000000000000
..............................................................................................................................................A---GAAGGTGAATGGGTCTA......................................................................................................................................................................................1811.00100001000000000000
............................................................................GGTAAGGATGAT---------GATGACGACG----------GC-------------C....................................................................................................................................................................................................................2511.00101000000000000000
.............................................................................GTAAGGATGAT---------GATG....................................................................................................................................................................................................................................................1511.00100000000001000000
droSec2
CGCTCCCGGTGGCC------------------AAAACCCGTACGCCACCCTGCCCCGCAGCAATGTGGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................GGCCAACAAGGTAAGGATGAT---------G.......................................................................................................................................................................................................................................................2211.0011000
................................AAAACCCGTACGCCACCCTGCCCCGC...............................................................................................................................................................................................................................................................................................2611.0011000
.......................................................CGCAGCAATGTGGGCCAACAAGG...........................................................................................................................................................................................................................................................................2311.0011000
.................................................................TGGGCCAACAAGGTAAGGATGAT---------GAT.....................................................................................................................................................................................................................................................2611.0010100
................................................................GTGGGCCAACAAGGTAAGGA.....................................................................................................................................................................................................................................................................2011.0010100
...................................................................................ATGAT---------GATGACGACG----------GC-------------TG--TCTGT............................................................................................................................................................................................................2411.0010010
.......................................................CGCAGCAATGTGGGCCAACAAGGTGGA.......................................................................................................................................................................................................................................................................2711.0010001
droYak3
CG------GTGGCC------------------AGAACCCGTACGCCACCCTGCCACGCAGCAATGTGGGCCAACAAGGTAAGGATGATAATGATGATGATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................GTGGGCCAACAAGGTAAGGATGATA................................................................................................................................................................................................................................................................2511.00101000000000
.........................................ACGCCACCCTGCCACGCAGCA...........................................................................................................................................................................................................................................................................................2111.00101000000000
......................................CGTACGCCACCCTGCCACGCAGC............................................................................................................................................................................................................................................................................................2311.00101000000000
............................................CCACCCTGCCACGCAGCAATGT.......................................................................................................................................................................................................................................................................................2211.00101000000000
..............................................................................................................................................A---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111.00100000010000
................................AGAACCCGTACGCCACCCTGCCA..................................................................................................................................................................................................................................................................................................2311.00101000000000
....................................................................................TGATAATGATGATGATGACGACG----------GC-------------T....................................................................................................................................................................................................................2611.00100000010000
...........................................GCCACCCTGCCACGCAGCA...........................................................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................TGATGATGATGACGACG----------GC-------------TG--TC...............................................................................................................................................................................................................2311.00100000010000
......................................................ACGCAGCAATGTGGGCCAACAAG............................................................................................................................................................................................................................................................................2311.00100000010000
droEre2
CGCTCCCGGTGGCC------------------AAAACCCGTACGCCACCCTGCCCCGCAGCAATGTGGGCCAACAAGGTAAGGATGAT---------GATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGAATGGGTCTAGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................GAT---------GATGACGACG----------GC-------------TG--TC...............................................................................................................................................................................................................1912.0020000200
.......................................................................................................GACG----------GC-------------TG--TCTGTCA---GAAG...................................................................................................................................................................................................1912.0022000000
...................................................................................................TGACGACG----------GC-------------TG--TCTGTCA---GA.....................................................................................................................................................................................................2112.0022000000
.....................................................................................GAT---------GATGACGACG----------GC-------------TG--TCT..............................................................................................................................................................................................................2012.0020000200
......................................CGTACGCCACCCTGCCCCGCA..............................................................................................................................................................................................................................................................................................2111.0011000000
..............................................ACCCTGCCCCGCAGCAATGTGGGCC..................................................................................................................................................................................................................................................................................2511.0011000000
..................................................................................................ATGACGACG----------GC-------------TG--TCTGTCA---GAAGGTG................................................................................................................................................................................................2711.0010000010
...................................................................................................TGACGACG----------GC-------------TG--TCTGTCA---GAAGGTGA...............................................................................................................................................................................................2711.0011000000
.............................................CACCCTGCCCCGCAGCAATGTGGGCC..................................................................................................................................................................................................................................................................................2611.0010100000
.............................................................................GTAAGGATGAT---------GATGACGACG----------GC-------------TG--T................................................................................................................................................................................................................2611.0011000000
.....................................................................................................................GC-------------TG--TCTGTCA---GAAGGTG................................................................................................................................................................................................1811.0011000000
..........................................................................AAGGTAAGGATGAT---------GATGA...................................................................................................................................................................................................................................................1911.0010000100
.....................................................................................................................................G--TCTGTCA---GAAGGTGAAT.............................................................................................................................................................................................1811.0011000000
..............................................................................TAAGGATGAT---------GATGACGACG----------GC-------------.....................................................................................................................................................................................................................2211.0010100000
...................................ACCCGTACGCCACCCTGCCCC.................................................................................................................................................................................................................................................................................................2111.0011000000

Generated: 05/16/2015 at 11:57 PM