ID:

dvi_2975

 Coordinate:

scaffold_12823:1403958-1404108 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.0

Flybase annnotation

CDS [Dvir\GJ18448-cds]; exon [dvir_GLEANR_314:10]; intron [Dvir\GJ18448-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATACGCAGAATAAGAGCCATAATGCGTATAATCAGCTGCTGAAGCAGTATGCCAATAAGCTGCAGCAGCAACACCCAAACAGCAACAACACAAACACAACAGCAACAGCAACAGAAACAACAACAAACAGACACAACAACACGGCCAAGCCATTCGCAGGCACAACAACAACAGCAACAGCAACAACTGGGCAACTGCAGCCACATGTCGCCGCGCTGACGGCAACACTAGCTAATCAATTGAAATTTAA
******************************************************************************........................((....)).............................**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 GSM1528803
follicle cells		 SRR060667
160_females_carcasses_total
 SRR060665
9_females_carcasses_total
 M061
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060670
9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 V053
head
 SRR060687
9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 V047
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060688
160_ovaries_total
.................................CAGCTGCTGAAGCAGTATGCC..................................................................................................................................................................................................... 21 0 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAGCAACAACACAAACACA........................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GCTGCAGCAGCAACACCCAAACAGCA...................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAATGCAGCCACATGTCGC....................................... 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CAGCTGCTGAAGCAGTATGCA..................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CATAAACACAACAGCAACAGCAACA......................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................AGCAGTATGCCAATAAGCT............................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACTGCAGCCACATGTCGCC...................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AACAACAACAAACAGACACAACA................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGGCAACTGCAGCCACATGTC......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........ATAGGAGCCATAATGCGT............................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GCTAATCAATTGAAATTTA. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GGCCAAGCCATTCGCAGG.......................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AACACTAGCTAATCAATTG........ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................ATGCCAATAAGCTGCAGCAGCAA................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................AGTATGCCAATAAGCTGCAGCAGC..................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ACACAAACACAACAGCAACAGCAACAGA....................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GCAACTGCAGCCACATGTC......................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................AGTATGCCAATAAGCTGCA.......................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TAAGCTGCAGCAGCAACACCCTAACAGC....................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.ATACGCAGAATAAGAGCCATAATGCGT............................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ACACAAACACAACAGCAACAGCAA........................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CATTCGCAGGCACAACAACA................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CGCGCTGACGGCAACACTAGCTAAT.............. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................AGCAGTATGCCAATAAGCTGCAGCAGC..................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AACTGCAGCCACATGTCGCC...................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AACAACACAAACACAACAGC................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GAAACAACAACAAACAGAC...................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................ACAACAACAACAGCAACAGCAACAACTG............................................................. 28 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GCACAACAACAACAGCAACAGC..................................................................... 22 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AACAGCAACAGCAACAGAAACA................................................................................................................................... 22 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................CACAACAACATGGGCAAGC.................................................................................................... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................ACAACAACAGCAACAGCAACA................................................................. 21 0 20 0.10 2 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................CTCTAGCAGCAACACCCA............................................................................................................................................................................. 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................ACACAACAGCAACAGCAACA......................................................................................................................................... 20 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........TAAGAGCCATGATGGGTTT............................................................................................................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................CACAACAACAACAGCAACA....................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................ACAACAACAGCAACAGCAA................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CAACAGCAACAGCAACAGA....................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AACAACAGCAACAGCAACA................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................AATCAACAAACAGACACGACA................................................................................................................ 21 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CAACAACAGCAACAGCAACAAC............................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTATGCGTCTTATTCTCGGTATTACGCATATTAGTCGACGACTTCGTCATACGGTTATTCGACGTCGTCGTTGTGGGTTTGTCGTTGTTGTGTTTGTGTTGTCGTTGTCGTTGTCTTTGTTGTTGTTTGTCTGTGTTGTTGTGCCGGTTCGGTAAGCGTCCGTGTTGTTGTTGTCGTTGTCGTTGTTGACCCGTTGACGTCGGTGTACAGCGGCGCGACTGCCGTTGTGATCGATTAGTTAACTTTAAATT
****************************************************************************************************************........................((....)).............................****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060670
9_testes_total
 SRR060655
9x160_testes_total
 SRR060656
9x160_ovaries_total
 V053
head
 M027
male body		 M047
female body
 SRR060661
160x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 V047
embryo
..................................................................CTCGTTGTGGGTTTGTCGTT..................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................GTGGTTGTGGGTTTGGCCTT..................................................................................................................................................................... 20 3 20 0.30 6 0 0 0 0 0 0 2 2 1 1 0
.....................................................................GTTGTGGGTTTGTAGATGT................................................................................................................................................................... 19 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................CTTCGTCGTTGAGGGTTTG.......................................................................................................................................................................... 19 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................GTCTGGGTTGTTGGGCAGG........................................................................................................ 19 3 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0
..................................................................................................................................CGGTGTAGTTGTGCTGGTTC..................................................................................................... 20 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................TGTTTGTATTGGTGTGCCGGT....................................................................................................... 21 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................TGTGTGTATTGTTGTGACGGT....................................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................AGCATGTTCGGTAAGCGTC........................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................TCCCAGTTGTTGCTGTCGTTGTCG..................................................................... 24 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................CGTTGTCTTTGTTCTTGGTT........................................................................................................................... 20 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12823:1403908-1404158 + dvi_2975 AATACGCAG------AATAAGA---GCCATAATGCGTATAATCAGCTGCTGAAGCAGTATGCCAATAAGCTGCAGCAGCAA--------------CACC---CAAACAGCAACA------------A-----CA------CA---AACACAACAGCAACAGC------AACAGAAA------------CA----------------------------ACAACAAACAGAC---------------AC------AACAACACGGCCAAGCCATTCGCAGGCA-------------------------------CAACAACAACAGCAACAGCA-----------------------------ACAACTG-------------------------------------------------------------------GGCAACTGCAGCCACATGTCGCCGCGCTGACGGCAACACTAGCTAATCAATTGAAATTTAA
droMoj3 scaffold_6496:497251-497489 - AACATGCAG------AACAAGG---GACATAATGCATATAATCAACTGCTAAAGCAGTACTCCCATAAGCTGCAGCAGCAG--------------CAGCAGCA--GCA------------------G-----CT------ACCCACAAACAACAGCAAC------------AGCAA------------CA----------------------------ACACAAACA-------------ACAGACAC------AACAACACGGCCAAACCATTCACAACAA-------------------------------CAACAACAACAACAACAGCA---------------------------------------------------------------------------------------------ACCAGCAATGG---------ACAGAATGTTGCAGCTCTGAGTGCAACACTCGCTAATCAATTGAAATTTAA
droGri2 scaffold_15245:5842461-5842726 - AACACGCAG------AACAAGA---GCCATAATGCGTATAATCAACTCCTCAAGCAATATTCCAACAAACTGCAGCACCAC--------------C------CAAACAACACAAATTC-AAACA--C-----AA------CAACGAAAACAACAGCAAC------------AACAA---------CAGCAGT-------------------------CACACAAAACAGAC---------------AACAGAACAACAACACGGCCAAGCCATTTGCAGTCC-------------------------------AAGCCACAACAGCAACAACA--------------------------------ACTACGG----------------------------------------------------------------GGCAACTGCAGCCCCATGTGGCAGCGTTGACGGCAACCCTTGCTAATCAATTGAAATTTAA
droWil2 scf2_1100000004512:924010-924245 + AATACGCAA------AATAAGA---ATCAGAATGCGTACAATCAATTGCTGAAAGAGTATTCCAATAAGCTCAATT-CCAA------TTCAACACAGAC-----AGCAG------CAACAACAACAAATACACA------ACTAAGACACAACAACAAC------------AACAA------------TA----------------------------ACACAACC-A------------GCAACAAC------AACAACACGGCCAAGCCATTTGCTGC---------------------------------------------------------------------------------------------------------------------------------------------------CCAAC----------AACAGCCTCATGTGGCCGCTTTGACGGCAACACTTGCTAATCAATTGAAATTTAA
dp5 3:19522738-19522973 + AAAACGCAG------AACAAGG---GCCATAATGCGTACAACCAATTGCTGAAAGAGTATTCCAATAAGCTGCAGCACCAG--------------CATCACCACA---------------------C-----C-----------------AACAACAAC------------AGCAACAC----CACAGCACA-------------------------CGCCCCACCCAGAC---------------AC---AACAACACCGTAGCCAAGCCATTTGCAACGTCATCT-GTGG---------------------CAGCCACAACG--------------------------------------------------------------------------------------------------------GAAC----------AGCAGCCGCTAGTGGCAGCGCTGACGGCGACACTTGCTAATCAATTGAAATTTAA
droPer2 scaffold_13:40709-40942 + ATCATCAGC------TACAACA---G----------------CAACTGCT---------------------GCTCCAGCAA-----------CAACAAC-----AACAG------CAG-------------------------------CAACA-------------------------------------------------------------------------------------------------------------------GCAACTGCAGCAGCAAC-AGCAGCAACAACAGCAATTACAACAGCAGCAACAGCA---------------------------ACAGCA--GCAACAACAATTGCTAATGCCACAACAACAACAATTACAACATTTGCAATTGTGCAATAACTATAT---A----ATCA------AC-ACGACAT---TCAACAACAACAGCAACAGTTGCCAA--AATAGTTATCATA
droAna3 scaffold_13266:12538063-12538304 + AATACCCAGAACCAGAACAAGG---GCCACAACGCGTACAACCAGATGCTGAAGGAGTACTCCAACAAGCTGCAGCAGCAACCATCC--------CTCCACCCGAACA------------------C-----CA------CACAGCACACGCCACCGA----------------------------------------------------------------CACAGAGACACAACAACAGCAACAAC------AACAACACGGCCAAGCCATTTGCCGCAG-------------------------------CA---------------------------------------------------------CACC---------------A--------------------------------ACAACAAC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAA
droBip1 scf7180000396372:38011-38240 + AATACCCAGAACCAGAACAAGG---GTCACAACGCGTACAACCAGATGCTGAAGGAGTACTCCAACAAGCTGCAGCAGCAACCATCC--------CTCCACCCGAACA------------------C-----CA------CACCGCACACCACACCGA----------------------------------------------------------------CACAGAGAC---------------AC---AACAACAACACGGCCAAGCCATTTGCCGCAG-------------------------------CA---------------------------------------------------------CAC---------------CA--------------------------------ACAGCAAC----------AACAGCCGCTTGTGGCAGCGCTAGCGGCGACACTTGCTAATCAATTGAAATTTAA
droKik1 scf7180000302682:1837143-1837381 - AATATGCAG------AACAAGG---GCCACAACGCGTACAACCAGCTGCTGAAGGAGTACTCCAACAAGCTGCAGCATCAG--------------CAGC------------------------------------------------------------------------AGCAACCCAACAAACAGCACACCCACCAACACACAACAAACACACCGCCCACACTGAGAC---------------AC---AACAACAACACGGCCAAGCCATTTGCAGCGT-------------------------------CA---------------------------------------------------------C---AG------------CA--------------------------------GCACCAAC----------AGCAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAA
droFic1 scf7180000453809:157050-157306 - AATACGCAG------AACAAGG---GCCCCAATGCGTACAACCAGCTGTTGAAAGAGTACTCCAACAAGCTGCAGCAGCAG--------------CAACACCC-------------------------------------------CCACAACAGCAAC------------AACAACAA----CACTACA----------------------------CCCGCACAGAGAC---------------AC------AACAACACGGCCAAGCCCTTTGCAGCTG-------------------------------CAACAGCAACAACA------------------------CCACAACAGCAACAACTACAGCACACG------------CA--------------------------------ACACCAAC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAA
droEle1 scf7180000491107:642000-642262 - AATACGCAG------AACAAGAGCAGCCCGAATGCGTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CAGCAACACA----------------------------------------------CC------------------AGCAA------------CA-----------------------------CGACACAGAGAC---------------AC---AACAACAACACGGCCAAGCCATTTACAGGGG-------------------------------CAACAACAACA---------------------------CCACCACAGCAACACCTGCCACACCTG---CAACACCAACAACCCCAACACCA--------------------ACAACAAC----------AACAGCCGCTTGTGGCAGCCCTAACGGCGACCCTTGCTAATCAATTGAAATTTAA
droRho1 scf7180000779911:449753-449997 + AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGTTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACC---ACAGCA------------------A-----CA------CGCAACACACGACAACAACACC-------------------------------------------------------CACCTCACAGAGAC---------------AC------AACAACACGGCCAAGCCATTTGCAGGGG-------------------------------CAATA---------------------------------CCACCACAGCAACACTTGCAACACCAG------------CA--------------------------------A---CAAC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAA
droBia1 scf7180000302292:3996158-3996426 + AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGTTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACC---ACAGCA------------------C-----CACACCCACACAGCACACGACAGCAACACC---AGCAACAGCAA------------CA----------------------------CCTCCGCAGAGAC---------------AC---AACAACAACACGGCCAAGCCATTTGCAGTGCAACA-GG------------------------CAACAA---------------------------------CACC------ACACCTGCAACACCCG------------CA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAA
droTak1 scf7180000415241:17694-17938 + AATACGCAG------AACAAGG---GCCCCAATGCGTACAACCAGCTGTTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACC---ACAACA------------------C-----CA------CACCACACACGACAACAACAGCTACAGCAACAGCAA------------CA----------------------------CCTCCACAGAGAC---------------ACAACAACAACAGCACGGCCAAGCCATTTGCAGTG----------------------------------------------------------------------------------------CCCCACCAG------------CA--------------------------------ACACCAAC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAA
droEug1 scf7180000409672:561283-561566 - AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGTTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACC---ACAACA------------------C-----CA------CACAGCACACGACAGCAAC------------AGCAA------------CA----------------------------CCCGCACAGAGAC---------------AC------AACAACACGGCCAAGCCATTTGGAGTGG-------------------------------CAGCAACTACTGCAACAGCAACAGCAACAACAACACCAACACCACATCAACACCTGCCACACCAA------------CA--------------------------------ACATCAAC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAA
dm3 chr2R:11662273-11662532 - AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACCACCACAACA------------------C-----CA------CACAGCACACGACAGCGA------------CAACAG------------CA----------------------------CCCTCACTGAAAC---------------AC------AACAACACGGCTAAGCCATTTGCAGTGG-------------------------------CGGCAACAAGC---------------------------ACACCCCAACAACACCTGCCACACCAA------------CA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAA
droSim2 2r:12328406-12328665 - AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACCACCACAACA------------------C-----CA------CACAGCACACGACAGCGA------------CAACAG------------CA----------------------------CCCTCACTGAAAC---------------AC------AACAACACGGCCAAGCCATTTGCAGTGG-------------------------------CGGCAACAAGC---------------------------ACACCCCAACAACACCTGCCACACCAA------------CA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAA
droSec2 scaffold_1:9155863-9156122 - AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACCACCACAACA------------------C-----CA------CACAGCACACGACAGCGA------------CAACAG------------CA----------------------------CCCTCACTGAAAC---------------AC------AACAACACGGCCAAGCCATTTGCAGTGG-------------------------------CGGCAACAAGC---------------------------ACACCCCAACAACACCTGCCACACCAA------------CA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAA
droYak3 2R:17324599-17324891 + AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACCACCACAACA------------------C-----CA------CACAGCACACGACAGCAACAGC------GGCAACAG------------CA----------------------------CCCTCACTCAAAC---------------AC------AACAACACGGCCAAGCCATTTGCAGTGGCAGT-GG------------------------CAGCAACAACC---------------CCAACAACCCCAACACCCCAACAACACCTGCCACACCAA---CAACACCAGCA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAA
droEre2 scaffold_4845:14200329-14200615 + AATACGCAG------AACAAGA---GCCCCAATGCCTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACCACCACAACA------------------C-----CA------CACAGCACACGACAGCGACAGCAACAGCGACAACAG------------CA----------------------------CCCCCACTAAAAC---------------AC------AACAACACGGCCAAGCCATTTGCAGTGGCATCA-G------------------------CGGCAAGCACC---------------------------ACACCCCAACAACACCTGCCACACCTA---CAACACCAGCA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTCACGGCGACACTTGCTAATCAATTGAAATTTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AATACGCAG------AATAAGA---GCCATAATGCGTATAATCAGCTGCTGAAGCAGTATGCCAATAAGCTGCAGCAGCAA--------------CACC---CAAACAGCAACA------------A-----CA------CA---AACACAACAGCAACAGC------AACAGAAA------------CA----------------------------ACAACAAACAGAC---------------AC------AACAACACGGCCAAGCCATTCGCAGGCA-------------------------------CAACAACAACAGCAACAGCA-----------------------------ACAACTG-------------------------------------------------------------------GGCAACTGCAGCCACATGTCGCCGCGCTGACGGCAACACTAGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................CAGCTGCTGAAGCAGTATGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000005
........................................................................................................AACAGCAACA------------A-----CA------CA---AACACA..........................................................................................................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
....................................................................GCTGCAGCAGCAA--------------CACC---CAAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..........................................CAGCTGCTGAAGCAGTATGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
....................................................AGCAGTATGCCAATAAGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGCCACATGTCGCC......................................1911.001000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................AA------------CA----------------------------ACAACAAACAGAC---------------AC------AACA...............................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------------------------------------------GGCAACTGCAGCCACATGTC.........................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATCAATTGAAATTTA.1911.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GGCCAAGCCATTCGCAGG.........................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTAGCTAATCAATTG........1911.001000000000000000001000000000000000000000000000000000000000000000
..........................................................ATGCCAATAAGCTGCAGCAGCAA--------------..................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.......................................................AGTATGCCAATAAGCTGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................A-----CA------CA---AACACAACAGCAACAGC------AACAGA...................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGCAGCCACATGTC.........................................1911.001000000000000000000000000000001000000000000000000000000000000000
.......................................................AGTATGCCAATAAGCTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.ATACGCAG------AATAAGA---GCCATAATGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................A-----CA------CA---AACACAACAGCAACAGC------AA.......................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CATTCGCAGGCA-------------------------------CAACAACA................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGCTGACGGCAACACTAGCTAAT..............2511.001000000000000000100000000000000000000000000000000000000000000000
....................................................AGCAGTATGCCAATAAGCTGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCAGCCACATGTCGCC......................................2011.001000000000000100000000000000000000000000000000000000000000000000
..............................................................................................................AACA------------A-----CA------CA---AACACAACAGC.....................................................................................................................................................................................................................................................................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................GAAA------------CA----------------------------ACAACAAACAGAC---------------...........................................................................................................................................................................................................................................................1920.501001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................A-------------------------------CAACAACAACAGCAACAGCA-----------------------------ACAACTG-------------------------------------------------------------------.............................................................2840.251001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GCA-------------------------------CAACAACAACAGCAACAGC.....................................................................................................................................................................2260.171001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AACAGCAACAGC------AACAGAAA------------CA----------------------------.......................................................................................................................................................................................................................................................................................2260.171000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................................................................................................................................................................ACAACAACAGCAACAGCA-----------------------------ACA....................................................................................................................................21200.102000000000000001001000000000000000000000000000000000000000000000
..................................................................................................................................................ACACAACAGCAACAGC------AACA.....................................................................................................................................................................................................................................................................................................................................20160.061000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................CA-------------------------------CAACAACAACAGCAACA.......................................................................................................................................................................19200.051000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ACAACAACAGCAACAGCA-----------------------------A......................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................CAACAGCAACAGC------AACAGA...................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCA-----------------------------ACA....................................................................................................................................19200.051000000000000000010000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAGCA-----------------------------ACAAC..................................................................................................................................22200.051000000000000000010000000000000000000000000000000000000000000000
droMoj3
AACATGCAG------AACAAGG---GACATAATGCATATAATCAACTGCTAAAGCAGTACTCCCATAAGCTGCAGCAGCAG--------------CAGCAGCA--GCA------------------G-----CT------ACCCACAAACAACAGCAAC------------AGCAA------------CA----------------------------ACACAAACA-------------ACAGACAC------AACAACACGGCCAAACCATTCACAACAA-------------------------------CAACAACAACAACAACAGCA---------------------------------------------------------------------------------------------ACCAGCAATGG---------ACAGAATGTTGCAGCTCTGAGTGCAACACTCGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACACTCGCTAATCAATTGAAAT....2711.001100000
.......AG------AACAAGG---GACATAATGCATAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGCTCTGAGTGCAA.........................1911.001100000
..............................................................................................................................................................................................................................AAACA-------------ACAGACAC------AACAACAC...........................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGCAGCTCTGAGTGCAAC........................2211.001100000
................................................................................................................................................ACAAACAACAGCAAC------------AGCA..................................................................................................................................................................................................................................................................................................................................19150.071100000
.................................................................................................................................................CAAACAACAGCAAC------------AGCAA------------.....................................................................................................................................................................................................................................................................................................................19160.061100000
droGri2
AACACGCAG------AACAAGA---GCCATAATGCGTATAATCAACTCCTCAAGCAATATTCCAACAAACTGCAGCACCAC--------------C------CAAACAACACAAATTC-AAACA--C-----AA------CAACGAAAACAACAGCAAC------------AACAA---------CAGCAGT-------------------------CACACAAAACAGAC---------------AACAGAACAACAACACGGCCAAGCCATTTGCAGTCC-------------------------------AAGCCACAACAGCAACAACA--------------------------------ACTACGG----------------------------------------------------------------GGCAACTGCAGCCCCATGTGGCAGCGTTGACGGCAACCCTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................ACACGGCCAAGCCATTTGCAGTC........................................................................................................................................................................................................................2311.00101
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTGGCAGCGTTGACGG............................2011.00101
.................................................................................................................................................AAAACAACAGCAAC------------AACAA---------C.......................................................................................................................................................................................................................................................................................................................20200.05110
.......................................................................................................................................................ACAGCAAC------------AACAA---------CAGCAG..................................................................................................................................................................................................................................................................................................................19200.05110
droWil2
AATACGCAA------AATAAGA---ATCAGAATGCGTACAATCAATTGCTGAAAGAGTATTCCAATAAGCTCAATT-CCAA------TTCAACACAGAC-----AGCAG------CAACAACAACAAATACACA------ACTAAGACACAACAACAAC------------AACAA------------TA----------------------------ACACAACC-A------------GCAACAAC------AACAACACGGCCAAGCCATTTGCTGC---------------------------------------------------------------------------------------------------------------------------------------------------CCAAC----------AACAGCCTCATGTGGCCGCTTTGACGGCAACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................ATCAATTGCTGAAAGAGTATTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200020
................................TGCGTACAATCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.........................................................................................................................CAACAAATACACA------ACTAAGACA............................................................................................................................................................................................................................................................................................................................................................2211.00101000
............................................ATTGCTGAAAGAGTATTCCAATAAGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
.................................................................................................................................................................................................................................................CAACAAC------AACAACACGGCCAAGC...................................................................................................................................................................................................................................2311.00101000
.....................................................................................................................................................................................................................................................AAC------AACAACACGGCCAAGCCATTTGC............................................................................................................................................................................................................................2611.00101000
.........................................................................ATT-CCAA------TTCAACACAGAC-----AGCAG------CA............................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..................................................GAAAGAGTATTCCAATAAGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
................................................................ATAAGCTCAATT-CCAA------TT........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..............................................................CAATAAGCTCAATT-CCAA------TTCAACACA.................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
...........................CAGAATGCGTACAATCAATTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.......................................AATCAATTGCTGAAAGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...................................GTACAATCAATTGCTGAAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.............................................................................................................................................................................................................................CAACC-A------------GCAACAAC------AACA...............................................................................................................................................................................................................................................18200.05100010
dp5
AAAACGCAG------AACAAGG---GCCATAATGCGTACAACCAATTGCTGAAAGAGTATTCCAATAAGCTGCAGCACCAG--------------CATCACCACA---------------------C-----C-----------------AACAACAAC------------AGCAACAC----CACAGCACA-------------------------CGCCCCACCCAGAC---------------AC---AACAACACCGTAGCCAAGCCATTTGCAACGTCATCT-GTGG---------------------CAGCCACAACG--------------------------------------------------------------------------------------------------------GAAC----------AGCAGCCGCTAGTGGCAGCGCTGACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................AACAC----CACAGCACA-------------------------CGCCCCACCC..............................................................................................................................................................................................................................................................................2412.0020110000000
....................................................................................................................................................................................................................................................................................CAACGTCATCT-GTGG---------------------CAGCCACAA...............................................................................................................................................................................2411.0010100000000
..........................................................................................................................................................................................................................................................................................................................AGCCACAACG--------------------------------------------------------------------------------------------------------GAAC----------AGCAGCCGCTAGT..........................................2711.0010000100000
.....GCAG------AACAAGG---GCCATAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
...........................................AATTGCTGAAAGAGTATTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
AAAACGCAG------AACAAGG---GCCATAATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.........................................................................................................................................................................................................................................................................................TCATCT-GTGG---------------------CAGCCACAACG--------------------------------------------------------------------------------------------------------GAAC----------AGC....................................................2811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCAGCGCTGACGGCGA.........................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGACGGCGACACTTGCTAATCAATT.........2711.0010100000000
droPer2
ATCATCAGC------TACAACA---G----------------CAACTGCT---------------------GCTCCAGCAA-----------CAACAAC-----AACAG------CAG-------------------------------CAACA-------------------------------------------------------------------------------------------------------------------GCAACTGCAGCAGCAAC-AGCAGCAACAACAGCAATTACAACAGCAGCAACAGCA---------------------------ACAGCA--GCAACAACAATTGCTAATGCCACAACAACAACAATTACAACATTTGCAATTGTGCAATAACTATAT---A----ATCA------AC-ACGACAT---TCAACAACAACAGCAACAGTTGCCAA--AATAGTTATCATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................T---A----ATCA------AC-ACGACAT---TCAACAACAACAG............................2811.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAACAGTTGC..................2220.501010000
.............................................................................GCAA-----------CAACAAC-----AACAG------CAG-------------------------------C...........................................................................................................................................................................................................................................................................................................................................................20200.051010000
...............................................................................AA-----------CAACAAC-----AACAG------CAG-------------------------------CA..........................................................................................................................................................................................................................................................................................................................................................19200.051010000
................................................................................A-----------CAACAAC-----AACAG------CAG-------------------------------CAAC........................................................................................................................................................................................................................................................................................................................................................20200.051010000
droAna3
AATACCCAGAACCAGAACAAGG---GCCACAACGCGTACAACCAGATGCTGAAGGAGTACTCCAACAAGCTGCAGCAGCAACCATCC--------CTCCACCCGAACA------------------C-----CA------CACAGCACACGCCACCGA----------------------------------------------------------------CACAGAGACACAACAACAGCAACAAC------AACAACACGGCCAAGCCATTTGCCGCAG-------------------------------CA---------------------------------------------------------CACC---------------A--------------------------------ACAACAAC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............AGAACAAGG---GCCACAACGCGTACAACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------ACAACAAC----------AACAGCCGCT.............................................1911.001010000
............................................................................................................................................................................................................................................AACAGCAACAAC------AACAACACGGC........................................................................................................................................................................................................................................2311.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................C---------------A--------------------------------ACAACAAC----------AACAGCCGCTTGT..........................................2311.001100000
........................................................GTACTCCAACAAGCTGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAGCGCTAACGGCGA.........................1911.001100000
.........................................................................................................................................................................................................................................................................CAAGCCATTTGCCGCAG-------------------------------CA---------------------------------------------------------.............................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCAGCGCTAACGGCGACA.......................2211.001000001
..........................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------CACC---------------A--------------------------------ACAACAAC----------AACAGC.................................................2050.201001000
........................................................................................................................................................................................................................................CAACAACAGCAACAAC------AACAAC.............................................................................................................................................................................................................................................22200.051010000
droBip1
AATACCCAGAACCAGAACAAGG---GTCACAACGCGTACAACCAGATGCTGAAGGAGTACTCCAACAAGCTGCAGCAGCAACCATCC--------CTCCACCCGAACA------------------C-----CA------CACCGCACACCACACCGA----------------------------------------------------------------CACAGAGAC---------------AC---AACAACAACACGGCCAAGCCATTTGCCGCAG-------------------------------CA---------------------------------------------------------CAC---------------CA--------------------------------ACAGCAAC----------AACAGCCGCTTGTGGCAGCGCTAGCGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotal
No Reads
droKik1
AATATGCAG------AACAAGG---GCCACAACGCGTACAACCAGCTGCTGAAGGAGTACTCCAACAAGCTGCAGCATCAG--------------CAGC------------------------------------------------------------------------AGCAACCCAACAAACAGCACACCCACCAACACACAACAAACACACCGCCCACACTGAGAC---------------AC---AACAACAACACGGCCAAGCCATTTGCAGCGT-------------------------------CA---------------------------------------------------------C---AG------------CA--------------------------------GCACCAAC----------AGCAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotal
No Reads
droFic1
AATACGCAG------AACAAGG---GCCCCAATGCGTACAACCAGCTGTTGAAAGAGTACTCCAACAAGCTGCAGCAGCAG--------------CAACACCC-------------------------------------------CCACAACAGCAAC------------AACAACAA----CACTACA----------------------------CCCGCACAGAGAC---------------AC------AACAACACGGCCAAGCCCTTTGCAGCTG-------------------------------CAACAGCAACAACA------------------------CCACAACAGCAACAACTACAGCACACG------------CA--------------------------------ACACCAAC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotal
No Reads
droEle1
AATACGCAG------AACAAGAGCAGCCCGAATGCGTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CAGCAACACA----------------------------------------------CC------------------AGCAA------------CA-----------------------------CGACACAGAGAC---------------AC---AACAACAACACGGCCAAGCCATTTACAGGGG-------------------------------CAACAACAACA---------------------------CCACCACAGCAACACCTGCCACACCTG---CAACACCAACAACCCCAACACCA--------------------ACAACAAC----------AACAGCCGCTTGTGGCAGCCCTAACGGCGACCCTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotal
No Reads
droRho1
AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGTTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACC---ACAGCA------------------A-----CA------CGCAACACACGACAACAACACC-------------------------------------------------------CACCTCACAGAGAC---------------AC------AACAACACGGCCAAGCCATTTGCAGGGG-------------------------------CAATA---------------------------------CCACCACAGCAACACTTGCAACACCAG------------CA--------------------------------A---CAAC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotal
No Reads
droBia1
AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGTTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACC---ACAGCA------------------C-----CACACCCACACAGCACACGACAGCAACACC---AGCAACAGCAA------------CA----------------------------CCTCCGCAGAGAC---------------AC---AACAACAACACGGCCAAGCCATTTGCAGTGCAACA-GG------------------------CAACAA---------------------------------CACC------ACACCTGCAACACCCG------------CA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotal
No Reads
droTak1
AATACGCAG------AACAAGG---GCCCCAATGCGTACAACCAGCTGTTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACC---ACAACA------------------C-----CA------CACCACACACGACAACAACAGCTACAGCAACAGCAA------------CA----------------------------CCTCCACAGAGAC---------------ACAACAACAACAGCACGGCCAAGCCATTTGCAGTG----------------------------------------------------------------------------------------CCCCACCAG------------CA--------------------------------ACACCAAC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotal
No Reads
droEug1
AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGTTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACC---ACAACA------------------C-----CA------CACAGCACACGACAGCAAC------------AGCAA------------CA----------------------------CCCGCACAGAGAC---------------AC------AACAACACGGCCAAGCCATTTGGAGTGG-------------------------------CAGCAACTACTGCAACAGCAACAGCAACAACAACACCAACACCACATCAACACCTGCCACACCAA------------CA--------------------------------ACATCAAC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotal
No Reads
dm3
AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACCACCACAACA------------------C-----CA------CACAGCACACGACAGCGA------------CAACAG------------CA----------------------------CCCTCACTGAAAC---------------AC------AACAACACGGCTAAGCCATTTGCAGTGG-------------------------------CGGCAACAAGC---------------------------ACACCCCAACAACACCTGCCACACCAA------------CA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGCAGCGCTAACGGCGACACTTGCTA................30118.001800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018
.......AG------AACAAGA---GCCCCAATGCGTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................ACAGCGA------------CAACAG------------CA----------------------------CCCTCACTGAA............................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................GCGA------------CAACAG------------CA----------------------------CCCTCACT...............................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AACACGGCTAAGCCATTTGC............................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GAAAC---------------AC------AACAACACGGCTAAGCCATT...............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................ACTCCAACAAGCTGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................TGCGTACAACCAGCTGCTGAAAGAGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CTCACTGAAAC---------------AC------AACAACACGGC........................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TACGCAG------AACAAGA---GCCCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................ACGACAGCGA------------CAACAG------------CA----------------------------CCC....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGTGGCAGCGCTAACGG............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................................CACTGAAAC---------------AC------AACAACACGGCTAAGCC..................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CAGCGA------------CAACAG------------CA----------------------------CCCTCACT...............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TGCGTACAACCAGCTGCTGAAAGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
................................................................................A--------------CACCACCACAACA------------------C-----CA------C....................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AACCAGCTGCTGAAAGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................GCAA--------------CACCACCACAACA------------------C-----CA------CACAGCACAA...........................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................ACAG------------CA----------------------------CCCTCACTGAAAC---------------AC------AACA...............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACTTGCTAATCAATTGAA......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CCTGCCACACCAA------------CA--------------------------------ACACCAGC----------AACAGC.................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TACGCAG------AACAAGA---GCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................ACAGCGA------------CAACAG------------CA----------------------------CCCTCACTGAAAC---------------A..........................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CACGGCTAAGCCATTTGCAGTGG-------------------------------C.......................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGCTGCTGAAAGAGTACTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ACACCAA------------CA--------------------------------ACACCAGC----------AACAGCC................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................AGAGTACTCCAACAAGCTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................CGACAGCGA------------CAACAG------------CA----------------------------CCCTCACTGAA............................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TGAAAGAGTACTCCAACAAGCTGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ATGCGTACAACCAGCTGCTGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGCTGCTGAAAGAGTACTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
........................................ACCAGCTGCTGAAAGAGTACTCCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCAGCGCTAACGGCGACACTT....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TGCGTACAACCAGCTGCTGAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................CACTGAAAC---------------AC------AACAACACGG.........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
.................................................TGAAAGAGTACTCCAACAAGCTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGACACTTGCTAATCAAT..........2111.0010000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AATACGCAG------AACAAGA---GCCCCAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................................................................................................GCCATTTGCAGTGG-------------------------------CGGCAACAAGC---------------------------ACA...............................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................ACACGGCTAAGCCATTTGCA...........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CAACACGGCTAAGCCATTTGCAGT.........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...................................................AAAGAGTACTCCAACAAGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................................TACAACCAGCTGCTGAAAGAGTACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TGAAAGAGTACTCCAACAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CCTCACTGAAAC---------------AC------AACAACACGGC........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........G------AACAAGA---GCCCCAATGCGTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACGCAG------AACAAGA---GCCCCAATGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CAGCTGCTGAAAGAGTACTCCAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................AGCTGCAGCAGCAA--------------CACCACCA..........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CTCACTGAAAC---------------AC------AACAACACGGCTAA.....................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................ACAACACCTGCCACACCAA------------CA--------------------------------.........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGCTGCTGAAAGAGTACTCCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGGCGACACTTGCTA................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................A------------------C-----CA------CACAGCACACGACAGCGA------------CAACAG------------C....................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................ACACGGCTAAGCCATTTGCAGTGG-------------------------------........................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACCACCACAACA------------------C-----CA------CACAGCACACGACAGCGA------------CAACAG------------CA----------------------------CCCTCACTGAAAC---------------AC------AACAACACGGCCAAGCCATTTGCAGTGG-------------------------------CGGCAACAAGC---------------------------ACACCCCAACAACACCTGCCACACCAA------------CA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................CTCACTGAAAC---------------AC------AACAACACGGC........................................................................................................................................................................................................................................2412.00200000002000000000
.....................................ACAACCAGCTGCTGAAAGAGTACTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................ACAACACCTGCCACACCAA------------CA--------------------------------ACACCAG..................................................................2811.00100100000000000000
...................................GTACAACCAGCTGCTGAAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.........................................................................................................................................................AGCGA------------CAACAG------------CA----------------------------CCCTCACTGAAAC---------------...........................................................................................................................................................................................................................................................2611.00100100000000000000
...............................................................................AA--------------CACCACCACAACA------------------C-----CA------.....................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
droSec2
AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACCACCACAACA------------------C-----CA------CACAGCACACGACAGCGA------------CAACAG------------CA----------------------------CCCTCACTGAAAC---------------AC------AACAACACGGCCAAGCCATTTGCAGTGG-------------------------------CGGCAACAAGC---------------------------ACACCCCAACAACACCTGCCACACCAA------------CA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................GTACAACCAGCTGCTGAAAGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
..................................................................................................................................................ACACGACAGCGA------------CAACAG------------CA----------------------------CCCTC..................................................................................................................................................................................................................................................................................2511.0010001
.......AG------AACAAGA---GCCCCAATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCCGCTTGTGGCAGCGCT.................................2211.0010010
.................................................................................................................................................................................................................................................................AACACGGCCAAGCCATTTGCAGT.........................................................................................................................................................................................................................2311.0010010
...................................GTACAACCAGCTGCTGAAAGAGTACTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
...............................................................................................................................................................................................................................................................................ATTTGCAGTGG-------------------------------CGGCAACAAGC---------------------------..................................................................................................................................................2211.0010100
..............................................................................................................................................................................................................................................................AACAACACGGCCAAGCCATTTGCAGT.........................................................................................................................................................................................................................2611.0010100
...ACGCAG------AACAAGA---GCCCCAATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
droYak3
AATACGCAG------AACAAGA---GCCCCAATGCGTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACCACCACAACA------------------C-----CA------CACAGCACACGACAGCAACAGC------GGCAACAG------------CA----------------------------CCCTCACTCAAAC---------------AC------AACAACACGGCCAAGCCATTTGCAGTGGCAGT-GG------------------------CAGCAACAACC---------------CCAACAACCCCAACACCCCAACAACACCTGCCACACCAA---CAACACCAGCA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTAACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................TGGCAGT-GG------------------------CAGCAACAACC---------------CC............................................................................................................................................................2211.00101000000000
...............................................................................................................................................................................................................................................................................ATTTGCAGTGGCAGT-GG------------------------CA......................................................................................................................................................................................1911.00100000010000
..............................................................................................................................................................................................................................................................................CATTTGCAGTGGCAGT-GG------------------------C.......................................................................................................................................................................................1911.00100100000000
....................................................AAGAGTACTCCAACAAGCTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCTAACGGCGACACTTGC..................2111.00101000000000
...........................................................................................................................................................................................................................................................................................AGT-GG------------------------CAGCAACAACC---------------CCAACAAC......................................................................................................................................................2411.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAACGGCGACACTTGCTAATCAATT.........2711.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................C----------AACAGCCGCTTGTGGCAGCGC..................................2211.00101000000000
.............................................................................GCAA--------------CACCACCACAACA------------------C-----CA------CACAGC...............................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
..................................................................................................................................................................................................................................................................ACACGGCCAAGCCATTTGCAG..........................................................................................................................................................................................................................2111.00100010000000
..........................................................................................................................................................................................................................................................................................................................................................................ACACCTGCCACACCAA---CAACAC..............................................................................................................2211.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCGACACTTGCTAATC.............2011.00101000000000
........G------AACAAGA---GCCCCAATGCGTACAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
............................................................................................................................................CACAGCACACGACAGCAACAGC------GG.......................................................................................................................................................................................................................................................................................................................................2411.00100010000000
......................................................................................................................................................................................................................................................................................................................................................................................CCAA---CAACACCAGCA--------------------------------ACACCA...................................................................2120.50100010000000
droEre2
AATACGCAG------AACAAGA---GCCCCAATGCCTACAACCAGCTGCTGAAAGAGTACTCCAACAAGCTGCAGCAGCAA--------------CACCACCACAACA------------------C-----CA------CACAGCACACGACAGCGACAGCAACAGCGACAACAG------------CA----------------------------CCCCCACTAAAAC---------------AC------AACAACACGGCCAAGCCATTTGCAGTGGCATCA-G------------------------CGGCAAGCACC---------------------------ACACCCCAACAACACCTGCCACACCTA---CAACACCAGCA--------------------------------ACACCAGC----------AACAGCCGCTTGTGGCAGCGCTCACGGCGACACTTGCTAATCAATTGAAATTTAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................CACACGACAGCGACAGCAACAGCGA.......................................................................................................................................................................................................................................................................................................................................2512.0020000002
........................................ACCAGCTGCTGAAAGAGTACTCCAACAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
..............................................TGCTGAAAGAGTACTCCAACAAGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
........G------AACAAGA---GCCCCAATGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...ACGCAG------AACAAGA---GCCCCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.....GCAG------AACAAGA---GCCCCAATGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
..............................................................................................................................................................CAGCAACAGCGACAACAG------------C....................................................................................................................................................................................................................................................................................................................1911.0011000000
.................................................................................................................................................................................................................................................................AACACGGCCAAGCCATTTGCAGT.........................................................................................................................................................................................................................2311.0010000100
............................................................................................................................................CACAGCACACGACAGCGACAGCAAC............................................................................................................................................................................................................................................................................................................................................2511.0011000000
...ACGCAG------AACAAGA---GCCCCAATGCCTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000
................................................................ACAAGCTGCAGCAGCAA--------------CACCACCACA........................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.....................................................AGAGTACTCCAACAAGCTGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
..................................................................................................................................................ACACGACAGCGACAGCAACAGCGACA.....................................................................................................................................................................................................................................................................................................................................2611.0010000100
..............................................................................................................................................................................................................................................................AACAACACGGCCAAGCCATTTGCAGT.........................................................................................................................................................................................................................2611.0010000100
................................................................................................................................................................................................................................................................................................................................CACC---------------------------ACACCCCAACAACACCTGCCACAC..........................................................................................................................2811.0010100000
..............................................TGCTGAAAGAGTACTCCAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...................................................................................................................................................CACGACAGCGACAGCAACAGC.........................................................................................................................................................................................................................................................................................................................................2111.0011000000
........................................ACCAGCTGCTGAAAGAGTACTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................CCTA---CAACACCAGCA--------------------------------ACACC....................................................................2011.0011000000
.ATACGCAG------AACAAGA---GCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010

Generated: 05/16/2015 at 11:56 PM