dvi_2889

AGGTGAAACTTCGTCGTACTCTGCTGTAACCAATACAAGATACGTGGGACCATTCACCCGACACCCGCACCAGCAAATGTAAACAGCGTAGTATTAACATTTATATATTCACGTGAACACAGCGTTAATTAGCGTAATTTTCATGTGCAGTCGCGACGGCACGCTTCTTTCCCGTGGATAGCTCTAACTGTACAGTATCAGCCGGTAAAATCATCTTTGAACGATGTACATGTATACATACACGTTTATCT *******************************************************************.....(((....(((((...(((.(((.((((..((....(((((((....(((((((....))))))).)))))))...))..)))).))).)))...))))))))((((.........))))......**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060681 Argx9_testes_total	V047 embryo	V053 head
....................................................................ACCAGCAAATGTGAACAGCGT..................................................................................................................................................................	21	1	1	1.00	1	1	0	0
........................................................................................................ATGGTCACGTGCACACAGC................................................................................................................................	19	3	15	0.07	1	0	1	0
...............................................................................................................................................TGGGCAGTCGCTACGTCAC.........................................................................................	19	3	19	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12823:673801-674051 +	dvi_2889	TCCACTTTGAAGCAGCATGAGACGACATTGGTTATGTTCTATGCACCCTGGTAAGTG------------------------------------GG--CT--GTGGGCGTGGTCGT------TTACATTTG-T----------------------CGCATCATAATTGTAAATATA-----TAAGTG------------------------------CACTTGTGTCGC---AATTAATCGCATT-AAAAGTACACGTCAGCG-CTG-CCGTG------------------------------CGAAGAAAGGGCACC-TATCGAGATTGACAT------GTCA---TAGTCGGCCATTTTAGTAGAAAC----T--TG-CTACAT--GTA--------CATATGTATGTGCAAATAGA
droMoj3	scaffold_6496:3285646-3285914 -		TCCACTTTGAAGCAGCATGAGACCACATTGGTTATGTTCTACGCACCCTGGTAAGTTGG----------------------------------GG--CG--GTGGGTGTGGCAGC----GCTCACAATTG-CA----------------------ACGTCA--ATTGTTA------ATATTAAGTGAATTGTG-------------------------------TGACCATGATTAATCGAATT-AAAAGTACACGTCAGCGGCTG-CCGTGTAAAAGAAAGGCCACATACATATAGCCA----------------------GGAATTGACAA------GTCA---GCGTCGGCCATTTTAG------C----T--TGTATACATATGTACATACATGCATATGTATGCGCGAATAGA
droGri2	scaffold_15245:8964357-8964596 -		TCAACTTTGAAACAGCATGAAACAACATTGGTTATGTTCTATGCACCCTGGTAAGTTTGG----------C----------GAGGGAGT-GGGGG--AG--GTGGGCGTGGCAC-TTGCAAATGCCAGTT-GGCAATTAATTTTG---------TG----------------------------------------------------------------------------------CGAATC-AAATGTACACGTCAGCG-CTG-CACCG------------------------------TGGAGAAGGGCCAACAAATCGGGATTGACA-ATA---GTCAGTGGAGTCGGCCATTTTAGTGGAGGT----TTCTGTGTACAC--ATA--------CATACAT---------TTGA
droWil2	scf2_1100000004558:2720076-2720381 +		TCCACTCTGAAGGAACATGAGACTACATTGGTTATGTTCTATGCCCCATGGTAAGTCTCTTGTGATATGTGTGGGTCTTGCAAGTAATA-TAGGG--GG--GTGGGCGTGGCCT--AGC--GTGCAAGT----TAATCAGCTTCTGTAATGCAATGGATAT-------------GCAATTT-----------------------------------------------------CAATTGAAACGTAAAGACCACGTCATCG-TTAATACAATAAAAGAAAGGCAAAGTAATACCCGCCAGGAG----AAGAAAGCGAAGAAGAAA-TGACAG------GTC------GGCAGCCATTTTAATAAAAGGGTTAT--TG-GTGTGA--GTG--------CGTGTGTGTGTGTG--TATA
dp5	3:17022597-17022780 -		TCCACACTGAAGCAGCAGGAGACGACATTGGTTATGTTCTATGCCCCCTGGTAAGTGCGTG-T-----GTGTGG----------G--GT-AAGGG--GA--GCGGGCGTGGCTGGTCGGGAGTGCAATTACCTTAATCAGCTTGT---------TGCGTCT-------------GCTTTTTAATTAAATTGCG-------------------------------CTGC---AATGAATCGAATC-AAAAGTACACGTCAGCG-TT---------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_31:736726-736909 +		TCCACACTGAAGCAGCAGGAGACGACATTGGTTATGTTCTATGCCCCCTGGTAAGTGCGTG-T-----GTGTGG----------G--GT-AAGGG--GA--GCGGGCGTGGCAGGTCGGGAGTGCAATTACCTTAATCAGCTTGT---------TGCGTCT-------------GCTTTTTAATTAAATTGCG-------------------------------CTGC---GGTGAATCGAATC-AAAAGTACACGTCAGCG-TT---------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13266:8620103-8620383 -		TCCACTTTGAAGCAGCACGAGACCACCTTGGTTATGTTCTATGCCCCCTGGTAAGTGTCTGGGGCTATGGGTAG----------GATTATATGGGTGTCGCGGGGGCGTGGCA--TTGCGTGTGCAATTG-GATAATCAGCTTGT---------TGCGTCT-------------GCACTTTAATTGAATTTCGCTGTCTGCCGCTGCCGCCGCCGGCA-TTGGCTTG-------CAATCCAATC-TAAAGTACACGTCAGCG-TTA-GCCGG------------------------------CAAAGAAAGAAAACCGTAAAGAGA-TGACTTGTGAGTGTT---GGTGTCGGCCATTTTA---------------------------------------------------------
droBip1	scf7180000396759:206288-206555 +		TCCACTTTGAAGCAGCATGAGACCACCTTGGTTATGTTCTATGCCCCCTGGTAAGTCTAT----------CTGG----------GATTATATGGGTGGTG-CGGGGCGTGGCA--TTGCGTGTGCAATTG-GATAATCAGCTTGT---------TGCGTCT-------------GCATTTTAATTGAATTTCGCT----GCCGCCGCAGTAGCCGGCACTTGGCCTG-------CAATCGAACCTCGAAGTACACGTCAGCG-TTA-CCCGG------------------------------CAATGAAGAAAAACCGTAAAGAGA-TGACTTGCGAGTGTT---GGTGTCGGCCATTTTA---------------------------------------------------------
droKik1	scf7180000302682:1494035-1494091 +		ACCACCCTGAAGCAGCATGAAACCACCTTGGTTATGTTTTATGCCCCCTGGTGAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453948:906776-906845 -		TCCACCCTGAAGCAGCATGAAACTACGCTGGTCATGTTCTACGCCCCCTGGTGAGTGAG--------------------------------------------GGGCGTGGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491214:3280621-3280687 -		ACCACACTGAAACAGCATGAAACTACGCTGGTTATGTTCTACGCCCCCTGGTGAGTGAG--------------------------------------------GGGCGTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779932:182793-182859 -		ACCACCCTAAAACAACACGAAACTACGCTGGTCATGTTCTACGCTCCATGGTAAGTTAG--------------------------------------------GGGCATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302292:564848-564915 -		AGCACCCTTAAGCAGCATGAGACAACGCTGGTCATGTTCTACGCCCCCTGGTGAGTG-----------------------------------------G--GAGGGCGTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415820:144084-144155 -		ACCACCCTGAAGCAACATGAAACTACGCTGGTCATGTTCTACGCCCCCTGGTGAGTG-----------------------------------------A--GTGGGCGTGGCCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409462:703627-703693 +		ACCACCCTAAAACAACATGAAACTACATTGGTCATGTTCTACGCCCCCTGGTGAGTG--------------------------------------------GTGGGCGTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:7778151-7778225 -		ACCACCCTAAAACAACACGAGACGACGCTGGTCATGTTCTACGCCCCCTGGTGAGTTAGTG-------------------------------------A--GTGGGCGTGGCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2r:8482864-8482938 -		ACCACCCTGAAACAACACGAGACGACGCTGGTCATGTTCTATGCCCCCTGGTGAGTTAGTG-------------------------------------A--GTGGGCGTGGCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_1:5329605-5329679 -		ACCACCCTGAAACAACACGAGACGACGCTAGTCATGTTCTATGCCCCCTGGTGAGTTAGTG-------------------------------------A--GTGGGCGTGGCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2R:9175239-9175309 +		ACCACCCTGAAACAACATGAGACGACGCTGGTTATGTTCTACGCCCCTTGGTGAGTG-----------------------------------------A--GTGGGCGTGGTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4845:18017270-18017340 +		ACCACCCTAAAACAACACGAGACGACACTGGTTATGTTCTACGCCCCCTGGTGAGTG-----------------------------------------A--GTGGGCGTGGTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TCCACTTTGAAGCAGCATGAGACGACATTGGTTATGTTCTATGCACCCTGGTAAGTG------------------------------------GG--CT--GTGGGCGTGGTCGT------TTACATTTG-T----------------------CGCATCATAATTGTAAATATA-----TAAGTG------------------------------CACTTGTGTCGC---AATTAATCGCATT-AAAAGTACACGTCAGCG-CTG-CCGTG------------------------------CGAAGAAAGGGCACC-TATCGAGATTGACAT------GTCA---TAGTCGGCCATTTTAGTAGAAAC----T--TG-CTACAT--GTA--------CATATGTATGTGCAAATAGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................TGAGACGACATTGGTTATGTTCTATGC......................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GCAGCATGAGACGACATTGGTTATGTTC...........................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.CCACTTTGAAGCAGCATGA..............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTGAAGCAGCATGAGACGACATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CTTTGAAGCAGCATGAGACGACA.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.............AGCATGAGACGACATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AAGTACACGTCAGCG-CTG-CCGTG------------------------------CGAAGAAAGGGCACC-TATCG...............................................................................................	43	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GCATGAGACGACATTGGTT.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................G------------------------------CGAAGAAAGGGCACC-TA..................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TGAAGCAGCATGAGACGACATTGGTTAT...............................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..CACTTTGAAGCAGCATGAGACGAC........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......TTGAAGCAGCATGAGACGACATTGGTTA................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTGAAGCAGCATGAGACGA.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GCATGAGACGACATTGGTTAT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CTTTGAAGCAGCATGAGACGACATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AATCGCATT-AAAAGTACACGT.................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTTGAAGCAGCATGAGACGACATTG....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CCACTTTGAAGCAGCATGAGACGAC........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................TGGTTATGTTCTATGCACCCTGGTGC............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TCCACTTTGAAGCAGCATGA..............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GAAGCAGCATGAGACGAC........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TGAAGCAGCATGAGACGACATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CATTGGTTATGTTCTATGCACCCTGGTGC............................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGTG------------------------------------GG--CT--GTGGGCGTGGTC.................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CCACTTTGAAGCAGCATGAGACGACA.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GAAGCAGCATGAGACGACATTGGTTA................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TATGTTCTATGCACCCTGGTG.............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AGCATGAGACGACATTGGTTATGTT............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTTGAAGCAGCATGAGACGACATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTGGTTATGTTCTATGCACCCTGG...............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ATTTG-T----------------------CGCATCATAATTGTAAATATA-----..............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CTTTGAAGCAGCATGAGACG..........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.....................................TCTATGCACCCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droMoj3

TCCACTTTGAAGCAGCATGAGACCACATTGGTTATGTTCTACGCACCCTGGTAAGTTGG----------------------------------GG--CG--GTGGGTGTGGCAGC----GCTCACAATTG-CA----------------------ACGTCA--ATTGTTA------ATATTAAGTGAATTGTG-------------------------------TGACCATGATTAATCGAATT-AAAAGTACACGTCAGCGGCTG-CCGTGTAAAAGAAAGGCCACATACATATAGCCA----------------------GGAATTGACAA------GTCA---GCGTCGGCCATTTTAG------C----T--TGTATACATATGTACATACATGCATATGTATGCGCGAATAGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................TGG----------------------------------GG--CG--GTGGGTGTGGCA.................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	1	1
.......................................................TTGG----------------------------------GG--CG--GTGGGTGTGGCAGC----...........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................CGTCAGCGGCTG-CCGTGTA................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.......TGAAGCAGCATGAGACCACATTGGTTA................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......TGAAGCAGCATGAGACCACA.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..........................ATTGGTTATGTTCTACGCACCCTGGTGC............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0

droGri2

TCAACTTTGAAACAGCATGAAACAACATTGGTTATGTTCTATGCACCCTGGTAAGTTTGG----------C----------GAGGGAGT-GGGGG--AG--GTGGGCGTGGCAC-TTGCAAATGCCAGTT-GGCAATTAATTTTG---------TG----------------------------------------------------------------------------------CGAATC-AAATGTACACGTCAGCG-CTG-CACCG------------------------------TGGAGAAGGGCCAACAAATCGGGATTGACA-ATA---GTCAGTGGAGTCGGCCATTTTAGTGGAGGT----TTCTGTGTACAC--ATA--------CATACAT---------TTGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TCCACTCTGAAGGAACATGAGACTACATTGGTTATGTTCTATGCCCCATGGTAAGTCTCTTGTGATATGTGTGGGTCTTGCAAGTAATA-TAGGG--GG--GTGGGCGTGGCCT--AGC--GTGCAAGT----TAATCAGCTTCTGTAATGCAATGGATAT-------------GCAATTT-----------------------------------------------------CAATTGAAACGTAAAGACCACGTCATCG-TTAATACAATAAAAGAAAGGCAAAGTAATACCCGCCAGGAG----AAGAAAGCGAAGAAGAAA-TGACAG------GTC------GGCAGCCATTTTAATAAAAGGGTTAT--TG-GTGTGA--GTG--------CGTGTGTGTGTGTG--TATA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................ATGAGACTACATTGGTTATGTT............................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	2	2	0
.CCACTCTGAAGGAACATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	1	2	0
......CTGAAGGAACATGAGACTACA.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0
...............CATGAGACTACATTGGTTATGTT............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
..........AGGAACATGAGACTACATT.....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0
..................GAGACTACATTGGTTATGTT............................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	1	0
................ATGAGACTACATTGGTTATG..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
.............AACATGAGACTACATTGG...................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
......CTGAAGGAACATGAGACTACATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	1	0	0
................................................................................................................CT--AGC--GTGCAAGT----TAATCAGC.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...ACTCTGAAGGAACATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................AAGGGTTAT--TG-GTGTGA--GTG--------C...................	21	1	1.00	1	0	0	1	0	0
.................TGAGACTACATTGGTTATGT.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
......CTGAAGGAACATGAGACTAC........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
............................................................................................................................CAAGT----TAATCAGCTTCTGTA..............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TAATAAAAGGGTTAT--TG-GTGT...................................	21	1	1.00	1	0	0	1	0	0
..........................................................................GTCTTGCAAGTAATA-TAGGG--G................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................AAGAAA-TGACAG------GTC------GGCAGC................................................................	21	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GAAA-TGACAG------GTC------GGCAGCC...............................................................	20	1	1.00	1	0	0	1	0	0
................................................................................CAAGTAATA-TAGGG--GG--GTGGG........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................GCAAAGTAATACCCGCCAGGAG----..............................................................................................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................TAGGG--GG--GTGGGCGTGGC..................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................A--GTG--------CGTGTGTGTGTGTG--T...	19	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................GTG--------CGTGTGTGTGTGTG--T...	18	20	0.05	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TGA--GTG--------CGTGTGTGTGTG........	18	20	0.05	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................GTGA--GTG--------CGTGTGTGTGTGT.......	20	20	0.05	1	0	0	1	0	0

dp5

TCCACACTGAAGCAGCAGGAGACGACATTGGTTATGTTCTATGCCCCCTGGTAAGTGCGTG-T-----GTGTGG----------G--GT-AAGGG--GA--GCGGGCGTGGCTGGTCGGGAGTGCAATTACCTTAATCAGCTTGT---------TGCGTCT-------------GCTTTTTAATTAAATTGCG-------------------------------CTGC---AATGAATCGAATC-AAAAGTACACGTCAGCG-TT---------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.CCACACTGAAGCAGCAGGAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	2	0	0	0	0	0	0	0	2
TCCACACTGAAGCAGCAGGAGACGA.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	2	0
............CAGCAGGAGACGACATTGGTTAT...............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................AGACGACATTGGTTATGT.............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...ACACTGAAGCAGCAGGAGACGACA.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..CACACTGAAGCAGCAGGAGACGACA.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........GAAGCAGCAGGAGACGACATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....CACTGAAGCAGCAGGAGACGACAT......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...............CAGGAGACGACATTGGTTATG..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........GAAGCAGCAGGAGACGAC........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................TGG----------G--GT-AAGGG--GA--GCGGGC.......................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................................TGCCCCCTGGTAAGTGCGTG-T-----..............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................TGG----------G--GT-AAGGG--GA--GCGGGCGTGGC..................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.CCACACTGAAGCAGCAGGAGA............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................GGAGACGACATTGGTTATG..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.CCACACTGAAGCAGCAGGAGACGACA.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.........AAGCAGCAGGAGACGACATT.....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........GCAGCAGGAGACGACATTGGTT.................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GAAGCAGCAGGAGACGACATTG....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........GAAGCAGCAGGAGACGACATT.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................GTG-T-----GTGTGG----------G--GT-AAGGT--.................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCCACACTGAAGCAGCAGGAGACGACATTGGTTATGTTCTATGCCCCCTGGTAAGTGCGTG-T-----GTGTGG----------G--GT-AAGGG--GA--GCGGGCGTGGCAGGTCGGGAGTGCAATTACCTTAATCAGCTTGT---------TGCGTCT-------------GCTTTTTAATTAAATTGCG-------------------------------CTGC---GGTGAATCGAATC-AAAAGTACACGTCAGCG-TT---------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....ACTGAAGCAGCAGGAGACGACAT......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
....................................................AAGTGCGTG-T-----GTGTGG----------G--GT-A.......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........AGCAGCAGGAGACGACATTGGTT.................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.....ACTGAAGCAGCAGGAGACGAC........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..................................................GTAAGTGCGTG-T-----GTGTGG----------G--...........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1

droAna3

TCCACTTTGAAGCAGCACGAGACCACCTTGGTTATGTTCTATGCCCCCTGGTAAGTGTCTGGGGCTATGGGTAG----------GATTATATGGGTGTCGCGGGGGCGTGGCA--TTGCGTGTGCAATTG-GATAATCAGCTTGT---------TGCGTCT-------------GCACTTTAATTGAATTTCGCTGTCTGCCGCTGCCGCCGCCGGCA-TTGGCTTG-------CAATCCAATC-TAAAGTACACGTCAGCG-TTA-GCCGG------------------------------CAAAGAAAGAAAACCGTAAAGAGA-TGACTTGTGAGTGTT---GGTGTCGGCCATTTTA---------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........AGCAGCACGAGACCACCTTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....TTTGAAGCAGCACGAGACCAC........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................GAGACCACCTTGGTTATGTT............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................CCTTGGTTATGTTCTATGCCCCCTGG...............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................G-GATAATCAGCTTGT---------TGCGTCT-------------GC..................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................GTACACGTCAGCG-TTA-GCC....................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0

droBip1

TCCACTTTGAAGCAGCATGAGACCACCTTGGTTATGTTCTATGCCCCCTGGTAAGTCTAT----------CTGG----------GATTATATGGGTGGTG-CGGGGCGTGGCA--TTGCGTGTGCAATTG-GATAATCAGCTTGT---------TGCGTCT-------------GCATTTTAATTGAATTTCGCT----GCCGCCGCAGTAGCCGGCACTTGGCCTG-------CAATCGAACCTCGAAGTACACGTCAGCG-TTA-CCCGG------------------------------CAATGAAGAAAAACCGTAAAGAGA-TGACTTGCGAGTGTT---GGTGTCGGCCATTTTA---------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACCACCCTGAAGCAGCATGAAACCACCTTGGTTATGTTTTATGCCCCCTGGTGAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCCACCCTGAAGCAGCATGAAACTACGCTGGTCATGTTCTACGCCCCCTGGTGAGTGAG--------------------------------------------GGGCGTGGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACCACACTGAAACAGCATGAAACTACGCTGGTTATGTTCTACGCCCCCTGGTGAGTGAG--------------------------------------------GGGCGTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACCACCCTAAAACAACACGAAACTACGCTGGTCATGTTCTACGCTCCATGGTAAGTTAG--------------------------------------------GGGCATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCACCCTTAAGCAGCATGAGACAACGCTGGTCATGTTCTACGCCCCCTGGTGAGTG-----------------------------------------G--GAGGGCGTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACCACCCTGAAGCAACATGAAACTACGCTGGTCATGTTCTACGCCCCCTGGTGAGTG-----------------------------------------A--GTGGGCGTGGCCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACCACCCTAAAACAACATGAAACTACATTGGTCATGTTCTACGCCCCCTGGTGAGTG--------------------------------------------GTGGGCGTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACCACCCTAAAACAACACGAGACGACGCTGGTCATGTTCTACGCCCCCTGGTGAGTTAGTG-------------------------------------A--GTGGGCGTGGCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........AAACAACACGAGACGACGCTG....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	3	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0
.............AACACGAGACGACGCTGGTC.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AAAACAACACGAGACGACGCT.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................CGAGACGACGCTGGTCATGTT............................................................................................................................................................................................................................................................................................................................................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACGAGACGACGCTGGTCATGT.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AACACGAGACGACGCTGGTCA................................................................................................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......TAAAACAACACGAGACGACGCTGG...................................................................................................................................................................................................................................................................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
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..........................GCTGGTCATGTTCTACGCCCCC..................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACGAGACGACGCTGGTCATGTTCT..........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AAACAACACGAGACGACGC......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATGTTCTACGCCCCCTGGTGC............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CACGAGACGACGCTGGTCA................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CACGAGACGACGCTGGTCATT..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ACCCTAAAACAACACGAGACGACGCT.....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GAGACGACGCTGGTCATGTTC...........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GTTCTACGCCCCCTGGTGC............................................................................................................................................................................................................................................................................................................................................................................	19	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACCACCCTGAAACAACACGAGACGACGCTGGTCATGTTCTATGCCCCCTGGTGAGTTAGTG-------------------------------------A--GTGGGCGTGGCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......TGAAACAACACGAGACGACGC......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
.........AAACAACACGAGACGACGCTG....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
.......TGAAACAACACGAGACGACGCTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..CACCCTGAAACAACACGAGACGACGC......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
..........AACAACACGAGACGACGCTGG...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........AACAACACGAGACGACGCTGAA..................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......CTGAAACAACACGAGACGACG.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........ACAACACGAGACGACGCTGGTCATGTT............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACGAGACGACGCTGGTCATGT.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....CCTGAAACAACACGAGACG..........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.CCACCCTGAAACAACACGAGACGACGC......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............CAACACGAGACGACGCTG....................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............CACGAGACGACGCTGGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....CCCTGAAACAACACGAGACGACGCT.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............CACGAGACGACGCTGGTCATGT.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........ACAACACGAGACGACGCTGGTC.................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAACACGAGACGACGCTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

ACCACCCTGAAACAACACGAGACGACGCTAGTCATGTTCTATGCCCCCTGGTGAGTTAGTG-------------------------------------A--GTGGGCGTGGCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............AACACGAGACGACGCTAGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
............CAACACGAGACGACGCTAGTC.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
............CAACACGAGACGACGCTAGTCATGTTC...........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.........AAACAACACGAGACGACGCTAGT..................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..............ACACGAGACGACGCTAGT..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..................GAGACGACGCTAGTCATGTT............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
................................................TGGTGAGTTAGTG-------------------------------------A--GTGGGT.......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
........GAAACAACACGAGACGACGCT.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
............CAACACGAGACGACGCTAGT..................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
......CTGAAACAACACGAGACGACGCTA....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
...ACCCTGAAACAACACGAGACGACG.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.............AACACGAGACGACGCTAGT..................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...............CACGAGACGACGCTAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0

droYak3

ACCACCCTGAAACAACATGAGACGACGCTGGTTATGTTCTACGCCCCTTGGTGAGTG-----------------------------------------A--GTGGGCGTGGTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........GAAACAACATGAGACGACGCTGGTT.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...ACCCTGAAACAACATGAGACGACG.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
................ATGAGACGACGCTGGTTATGTTCT..........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
.CCACCCTGAAACAACATGAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................ATGAGACGACGCTGGTTAT...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............AACATGAGACGACGCTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........ACAACATGAGACGACGCTG....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........AAACAACATGAGACGACGCT.....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........GAAACAACATGAGACGACGCT.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................ATGAGACGACGCTGGTTATGT.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

ACCACCCTAAAACAACACGAGACGACACTGGTTATGTTCTACGCCCCCTGGTGAGTG-----------------------------------------A--GTGGGCGTGGTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................GACACTGGTTATGTTCTACGCCCCCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	29	1	4.00	4	0	0	0	0	0	0	4
..........AACAACACGAGACGACACTGG...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
...............CACGAGACGACACTGGTT.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.................................ATGTTCTACGCCCCCTGGTGC............................................................................................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	2	0	0	0	0	0
......CTAAAACAACACGAGACGACACTGGT..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
......CTAAAACAACACGAGACGACA.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.............................GGTTATGTTCTACGCCCCCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...................................GTTCTACGCCCCCTGGTGC............................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	1	0	0	0	0	0	0

dvi_2889

scaffold_12823:673851-674001 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-29.4	-29.0	-29.0