ID:

dvi_2807

 Coordinate:

scaffold_12822:4073747-4073897 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.4 -4.3 -4.2

Flybase annnotation

exon [dvir_GLEANR_14105:1]; CDS [Dvir\GJ14151-cds]; intron [Dvir\GJ14151-in]

Repeatable elements

NameClassFamilyStrand
TV1ILTRGypsy+
(TATG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_10231:1407-1434 +
  2. scaffold_12661:634-661 +
  3. scaffold_12734:120236-120263 +
  4. scaffold_12734:468601-468628 +
  5. scaffold_12855:7779995-7780022 +
  6. scaffold_12875:9590101-9590128 +
  7. scaffold_12875:10019595-10019622 +
  8. scaffold_12894:77051-77078 +
  9. scaffold_12928:5729069-5729096 +
  10. scaffold_12954:875243-875270 +
  11. scaffold_12963:20075824-20075851 +
  12. scaffold_12970:1366301-1366328 +
  13. scaffold_12970:2887962-2887989 +
  14. scaffold_12970:6069087-6069114 +
  15. scaffold_12970:8119498-8119525 +
  16. scaffold_13047:11563521-11563548 +
  17. scaffold_13049:18877233-18877260 +
  18. scaffold_13050:3367110-3367137 +
  19. scaffold_13052:1213243-1213270 +
  20. scaffold_13246:1709107-1709134 +
  21. scaffold_12875:13385438-13385465 +
  22. scaffold_13045:834370-834397 +
  23. scaffold_269:454-481 +
  24. scaffold_9742:1713-1740 +
  25. scaffold_10324:1285229-1285256 +
  26. scaffold_10471:9085-9112 +
  27. scaffold_10614:1235-1262 +
  28. scaffold_12100:311711-311738 +
  29. scaffold_12723:2103869-2103896 +
  30. scaffold_12723:2227058-2227085 +
  31. scaffold_12736:118420-118447 +
  32. scaffold_12823:2405652-2405679 +
  33. scaffold_12903:904-931 +
  34. scaffold_12954:882174-882201 +
  35. scaffold_12954:886448-886475 +
  36. scaffold_12963:11868280-11868307 +
  37. scaffold_12963:16212572-16212599 +
  38. scaffold_12970:4449531-4449558 +
  39. scaffold_12970:4455940-4455967 +
  40. scaffold_13047:11569913-11569940 +
  41. scaffold_13049:1757668-1757695 +
  42. scaffold_13049:16741999-16742026 +
  43. scaffold_10324:1278837-1278864 +
  44. scaffold_12855:7246447-7246474 +
  45. scaffold_12963:5934556-5934583 +
  46. scaffold_970:518-545 +
  47. scaffold_8279:1101-1128 +
  48. scaffold_10547:474-501 +
  49. scaffold_12149:3180-3207 +
  50. scaffold_12796:14892-14919 +
  51. scaffold_12822:991141-991168 +
  52. scaffold_12822:3246475-3246502 +
  53. scaffold_12855:9761365-9761392 +
  54. scaffold_12875:2806111-2806138 +
  55. scaffold_12875:9560899-9560926 +
  56. scaffold_12875:17255755-17255782 +
  57. scaffold_12875:18438156-18438183 +
  58. scaffold_12963:14432440-14432467 +
  59. scaffold_12963:19075288-19075315 +
  60. scaffold_13047:6250048-6250075 +
  61. scaffold_13047:7721218-7721245 +
  62. scaffold_13047:8344279-8344306 +
  63. scaffold_13049:1751693-1751720 +
  64. scaffold_13049:4684222-4684249 +
  65. scaffold_13049:6108321-6108348 +
  66. scaffold_387:691-718 -
  67. scaffold_972:944-971 -
  68. scaffold_1223:425-452 -
  69. scaffold_6344:1109-1136 -
  70. scaffold_9996:612-639 -
  71. scaffold_12786:34864-34891 -
  72. scaffold_12786:35972-35999 -
  73. dvi_2807  scaffold_12822:4073765-4073792 -
  74. scaffold_12875:1614221-1614248 -
  75. scaffold_12875:13102462-13102489 -
  76. scaffold_12875:16003150-16003177 -
  77. scaffold_12954:1299735-1299762 -
  78. scaffold_12970:8517077-8517104 -
  79. scaffold_13047:7718649-7718676 -
  80. scaffold_13047:9327955-9327982 -
  81. scaffold_13047:15027380-15027407 -
  82. scaffold_13049:4313531-4313558 -
  83. scaffold_13049:24045864-24045891 -
  84. scaffold_13246:1126381-1126408 -
  85. scaffold_13324:1109302-1109329 -
  86. scaffold_1108:246-273 +
  87. scaffold_10419:85542-85569 +
  88. scaffold_12100:131755-131782 +
  89. scaffold_12272:4272-4299 +
  90. scaffold_12736:112027-112054 +
  91. scaffold_12855:3687269-3687296 +
  92. scaffold_13042:2634415-2634442 +
  93. scaffold_13042:4920712-4920739 +
  94. scaffold_13047:5248008-5248035 +
  95. scaffold_13049:3048432-3048459 +
  96. scaffold_13049:24366704-24366731 +
  97. scaffold_13246:1739990-1740017 +
  98. scaffold_164:8-35 +
  99. scaffold_12871:398-425 +
  100. scaffold_12928:5735419-5735446 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCTGCTCGTGACGCTGACAGCGCTGCCCACTTTGTGCTCGGCACTGACTTGTAAGTACTCGTATCAGACACGCCAACTTCATCTTCTTCAGCTTGCAGCTACTTCATCATGCACACACACACACACATACATACATACATATATATAATTAAGTTTTACACGTTAGGTTACTATAAAAAAATATATTTCAATTTATTATTTTCACTTAACGGCTACTTTTGTTGAGTACATTCAGATTTGCTTCCCGAATA
**************************************************(((((.((((((.......))).....................((((............))))......................................))))))))....(((....)))............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060676
9xArg_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 M047
female body
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 GSM1528803
follicle cells		 M061
embryo
 SRR060678
9x140_testes_total
 SRR060675
140x9_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060668
160x9_males_carcasses_total
 M027
male body		 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 V116
male body
.............................CTTTGTGCTCGACCCTCACTTGT....................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTTCACTTAACGGCTACTTTTGTTGAG......................... 27 0 20 0.65 13 0 0 0 0 10 3 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ACTTAACGGCTACTTTTGTTG........................... 21 0 20 0.55 11 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTCACTTAACGGCTACTTTTGTTG........................... 24 0 20 0.50 10 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTACACGTTAGGTTACTATAAAAAAATA.................................................................... 28 0 20 0.40 8 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATTTTCACTTAACGGCTACTTTTGTT............................ 27 0 20 0.35 7 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTACACGTTAGGTTACTATAAAAAAAAA.................................................................... 28 1 20 0.25 5 0 0 1 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTTTCACTTAACGGCTACTTTTGTTG........................... 26 0 20 0.25 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAGTACATTCAGATTTGCTTCCCGAA.. 26 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGTACATTCAGATTTGCTTCCCGAAT. 26 0 20 0.15 3 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTACACGTTAGGTTACTATAAAA......................................................................... 23 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTGAGTACATTCAGATTTGC.......... 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAGTACATTCAGATTTGCTTCCCGA... 25 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAGTACATTCAGATTTGCTTCCCG.... 24 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCACTTAACGGCTGCTTTTGTTGAGTAC...................... 28 1 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAGTACATTCAGATTTGCTTCCCGAATA 28 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTGTTGAGTACATTCAGATTTGCTTCC...... 27 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTACACGTTAGGTTACTATAAAAA........................................................................ 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................................TTTCACTTAACGGCTACCTTTGTTG........................... 25 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTCAATTTATTATTTTCACTTAACGGC...................................... 27 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.............................CCTTGTGCTTGGCACTGAGT.......................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................TTGTTGAGTACATTCAGATTTGCT......... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TTGTTGAGTACATTCAGATTGCCT......... 24 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................TAAGTTTTACACGTTAGGTTA................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................TCACTTAACGGCTACTTTTGTTG........................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTCACTTAACGGCTACTTTTGTTGAATC....................... 28 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCTCACTTAACGGCTACTTTTGTTG........................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TAACGGCTACTTTTGTTGAGTACATTC.................. 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TGTTGAGTACATTCAGATTTGCT......... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTTCACTTAACGTCTACTTTTGTTG........................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................TTAAGTTTTACACGTTAGG.................................................................................... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTATTTTCACTTAACGGCTACTTTTGT............................. 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATTTTCACTTAACGGCTC.................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................TATTTTCACTTAACGGCTACTTTTGT............................. 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTACACGTTAGGTTACTATA............................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TACTTTTGTTGAGTACATTCAGATTTGCT......... 29 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTAAGTTTTACACGTTAGGT................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTCACTTACCTGCTACTTTTGTTGAG......................... 26 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ACATTCAGATTTGCTTCCCGA... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................ATTGAGTACATTCGGATTTGCTTCCCGAA.. 29 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TAGGTTACTATAAAAAAATATATTTCAA............................................................ 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................ACGTTAGGTTACTATAAAAAAAT..................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTCACTTAACGGCTACTTTTGTTGG.......................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TTTCACTTAACGGCTCCTTTTGTT............................ 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTCAATTTATTATTTTCACTTAACG........................................ 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TACTTTTGTTGGGTACATTCAGAT.............. 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AAGTTTTACACGTTAGGTTACTATAAAA......................................................................... 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TACACGTTAGGTTACTATAAACAAATA.................................................................... 27 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TAACGGCTACTTTGGTTGAGTACATTC.................. 27 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTACACGTTAGGTTACTATAAAAACA...................................................................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGACGAGCACTGCGACTGTCGCGACGGGTGAAACACGAGCCGTGACTGAACATTCATGAGCATAGTCTGTGCGGTTGAAGTAGAAGAAGTCGAACGTCGATGAAGTAGTACGTGTGTGTGTGTGTGTATGTATGTATGTATATATATTAATTCAAAATGTGCAATCCAATGATATTTTTTTATATAAAGTTAAATAATAAAAGTGAATTGCCGATGAAAACAACTCATGTAAGTCTAAACGAAGGGCTTAT
**************************************************(((((.((((((.......))).....................((((............))))......................................))))))))....(((....)))............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060676
9xArg_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060689
160x9_testes_total
 M027
male body		 V116
male body		 SRR060674
9x140_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060678
9x140_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 M061
embryo
 SRR060679
140x9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060673
9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060681
Argx9_testes_total
 SRR060688
160_ovaries_total
................................................................................................................................................................................................................TGCCGATGAAAACAACTCATGTAAGTCT............... 28 0 20 2.30 46 15 18 0 6 0 0 1 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCGATGAAAACAACTCATGTAAG.................. 26 0 20 1.05 21 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TCCATGAAGTAGTCCTTGTGT...................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGGTTGAAGAAGAAGAAGTCG............................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAAAACAACTCATGTAAGTCTAAAC........... 25 0 20 0.65 13 0 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TATGTATGTATGTATATATAT........................................................................................................ 21 0 20 0.45 9 2 2 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1
.....................................................................................................................................................ATTCAAAATGTGCAATCCAATGAT.............................................................................. 24 0 20 0.40 8 0 0 0 6 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGTGAATTGCCGATGAAAA............................... 19 0 20 0.30 6 2 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CAAAATGTGCAATCCAATGAT.............................................................................. 21 0 20 0.30 6 2 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CGATGAAAACAACTCATGTAAG.................. 22 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AATTGCCGATGAAAACAACTCAT....................... 23 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCGATGAAAACAACTCATGTAAGTCT............... 26 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGTGTGTGTGTATGTATGTAT.................................................................................................................. 21 0 20 0.20 4 0 0 0 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GATCACTGCGTCTGTAGCGA................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCGATGAAAACAACTCATGTAA................... 22 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCCGATGAAAACAACTCATGTAAGTCT............... 27 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCGATGAAAACAACTCATGTAAGTC................ 28 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AAAGTGAATTGCCGATGAAAA............................... 21 0 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAAAGTGAATTGCCGATGAAA................................ 21 0 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ATATATATTAATTCAAAATGTGCAAT...................................................................................... 26 0 20 0.15 3 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACAACTCATGTAAGTCTAAACG.......... 22 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................ATATATTAATTCAAAATGTGCAAT...................................................................................... 24 0 20 0.15 3 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTGTGTATGTATGTATGTAT.............................................................................................................. 20 0 20 0.15 3 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGATGAAAACAACTCATGTAAGTC................ 27 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGTGTGTGTATGTATGTATGT................................................................................................................ 21 0 20 0.15 3 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCGATGAAAACAACTCATGTAAGT................. 27 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ATATATATTAATTCAAAATGTGCAATC..................................................................................... 27 0 20 0.10 2 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGAAAACAACTCATGTAAGTCTAAAC........... 26 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCATGTAAGTCTAAACGAAGG...... 21 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGAAAACAACTCATGTAAGTCT............... 22 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGTGTGTATGTATGTATG................................................................................................................. 18 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................ACGAGCCATGACCGAACAA...................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATTGCCGATGAAAACAACTCATGTAA................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAAAAGTGAATTGCCGGTGAA................................. 21 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTAATTCAAAATGTGCAATCCAATGATAT............................................................................ 29 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GTGTGTGTATGTATGTATGTA............................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTTCAAAATGTGCAATCCAATGAT.............................................................................. 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATAAAAGTGAATTGCCGATGAAAACAACT.......................... 29 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GTGTGTGTGTATGTATGTATGTA............................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCCGATGAAAACAACTTATGTAAGTCT............... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAAAGTGAATTGCCGATGAA................................. 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATAAAGTTAAATAATAAAAGTGAATT.......................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGATGAAAACAACTC......................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................AAGTTAAATAATAAAAGTGAATT.......................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCGATGAAAACAACTCATG...................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CATGTAAGTCTAAACGAAGG...... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCGATGAAAACAACTCATGTTAGT................. 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGAAAACAACTCATGTAAGTCTAAGC........... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTTTTATATAAAGTTAAATAATAAA.................................................. 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTAAGTCTAAACGAAGGGCTTAT 23 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TCAAAATGTGCAATCCAATGATATTTTTT....................................................................... 29 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................ATAAAGTTAAATAATAAAAGTGAATTG......................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATTGCCGATGAAAACAACTCATGCAAGT................. 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCGATGAAAACAACTCATGTAA................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GTCTAAACGAAGGGCTTA. 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAAAACAACTCATGTAAGTCT............... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGTGTGTGTGTAAGTATGTATGTAT.............................................................................................................. 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................GATGAAAACAACTCATGTAAGTCT............... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTATATAAAGGTAAATAATAAAAGTGA............................................. 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTAATTCAAAATGTGCAATC..................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ATATATATTAATTCAAAATGTGCAA....................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGTGAATTGCCGATGAAAACA............................. 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CATTCAAAATGTGCAATCCAATGAT.............................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TATATTAATTCAAAATGTGCAATC..................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TATATATATTAATTCAAAATGTGCAATC..................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCCGATGAAAACAACTCATGC..................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GTGAATTGCCGATGAAAACAACTCATG...................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AAAGTGAATTGCCGATGAAAAC.............................. 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGAATTGCCGATGAAAACAACTC......................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATCAAAATGTGCAATCCAATGAT.............................................................................. 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGAAAACAACTCATGTAAGTCTAA............. 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GAATTGCCGATGAAAACAACTCATGTAA................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGTGAATTGCCGATGAAAAC.............................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGATGAAAACAACTCATGTAAGT................. 26 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CGATGAAAACAACTCATGTAAGTCT............... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TAATTCAAAATGTGCAATCCAATGAT.............................................................................. 26 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATAAAGTTAAATAATAAAAGTGAATTGCC....................................... 29 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ACGTGTGTGTGTGTGTGT............................................................................................................................ 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATGAAAACAACTCATGTAAGTCTAAACG.......... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CAACTCATGTAAGTCTAAACG.......... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ACGTGTGTGTGTGTGTGTATG......................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GAAAACAACTCATGTAAGTCTAAACG.......... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TAAGTCTAAACGAAGGGCT... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGTGAATTGCCGATGAAAACAACTCA........................ 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................CCGATGAAAACAACTCATGTA.................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GTGTGTGTGTGTGTATGTA....................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AAACAACTCATGTAAGTCTAAACG.......... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTAGTTAAATAATAAAAGTGAATTGC........................................ 26 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TCAAAATGTGCAATCCAATGAT.............................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GTGTGTGTGTATGTATGTATGT................................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12822:4073697-4073947 - dvi_2807 GCT-GCTCGTGACGC----TGA---------------CAGCGCTGCCCACTTTGTGCTCGGCACTG------ACTTGTAAGTACTCGTATCAGACAC--GCCAACTTCATCTTCT-------TCAGCTTGCAGCTACTTCA-TCATGCAC--ACACACACAC----ACA----TA--------------------------------------------------------------------------------------CATACATACATATATATAATTAAGTTT-TACAC----GTTAGGTT-ACT---A-T----AAAAAAATATAT-T------------------------------------------------------------TCAATTTATTATTTTCACTTA-------ACGGCTACT-TTTGTTGA---GTACATTCAGATTTGCTTCCCGAATA
droMoj3 scaffold_5550:312-416 - AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTTT-TGCAC----GTTAGGTT-ACT---A-T----AAAAAAATATAT-T------------------------------------------------------------TCAATTTATTATTTTCACTTA-------ACGGCTACT-TTTGTTGA---GTACATTCAGATTTGCTTCCCGAATA
droGri2 scaffold_15110:15941451-15941592 + GTTTGCTGC-----------------------------------------------------------------------------------------------------------------------------TGTGGCATAGACAC----ACACACACAC----ACA----TA--------------------------------------------------------------------------------------AATACACACACACACACACCTACACA----CAA-----GCAAGCTCAAT---TTA----TAAATAA--TAA-T----------------------------------------------------------------TTTGTTGTTGTCTGCTT-------ACAGGCGCC-GTTGTCGT---CTGCAGGCAAACT----------GGC
droWil2 scf2_1100000004902:7434958-7435168 - GCT-GTTGATGATGA----TGATGGTGGCTTGTGTGGCAG---------CTCCAAGCTTGGCGCCAGTAAA-------AGCAAC--ATATTGAATATTGATG---CGCATCGATT-------TCGACTTGAAAC-------------------T----GCAAAAGTTCAG------------------------------------------------------------------------ACACGCACACACATA----CATACATATAGACGCACACTCGA-CATGCATAC----TCTTTGT--------TTATAATAAAAACA--T-T-------------------------------------------------------------TGCAATCTCTTATTACCACCAA-------TT------------------------------------------GGC
dp5 XR_group6:4188381-4188518 - CA--------------------------------------------------------------------------------------------------------------------------------------------CCACAC----ACACAC--AC----ACACACAAAGAGAGAGAGATAGGTATAATTCGGGGTGTAAATTATTTCGT---------------------------------------------------------------------TATTTGC-----------------T---A-T----AACAATTCGTA--------------------------------------------------------------TACAAATTTTGATATTTATTTA-------AAGGTCTTT-CATGTTAC---GA-AATT-------------TAGATT
droPer2 scaffold_58:160574-160681 + AC--------------------------------------------------------------------------------------------------------------------------------------------ATACAT----ATGCAT--AT----ACATA--------------------------------------------------------------------------------------------TATGTATATATATACACGTATAG------GC----CATACACAT------------------AGTGCAA-T----------------------------GCAATTCATTGCATTCAAATGACTGATT------AA-----------------------------TAT---------------------------TTTTTTTTAGTA
droAna3 scaffold_13228:695130-695243 - AT--------------------------------------------------------------------------------------------------------------------------------------------ATA----------------------------------------------------------------------------------------------------------------------------------TATAATTAAATATCTTCTT-----CAAAAAT-A--GT-T-T----GAAAAAATATAT-TTTTATTTGAGTTCCGTTTTTGATTCAGTGTG---------------------------------------------------------------ATT-TTTTTTAA---AACTGCTTAGAAT---TTTTGGAGTT
droBip1 scf7180000391969:2977-3067 - ATT-T--------------------------------------------------------------------------------------------------------------------------------------------TATATACATACTT--AT----ATA----GA--------------------------------------------------------------------------------------TATATATATATATATATAATTATATATCTTTTT-----CAAAATT-A--GATTTA----AAAAAAATATAT-TTTTA--------------------------------------------------------------------------------------------------------------------------------TTT
droKik1 scf7180000302808:426900-427041 + GCC-GCTGC----TT----TGG---------------CTGCTCCACTTGTTGTTTGGCCAAC------AAATTTTTACAGCCAG--CCATTGTGCAGTGAGGGACGCAGCTCTCGCCGGCTGTCAACTC-----------------TC--ACTT----GCACACATGGAC------------------------------------------------------------------------ACTCG--------------CACACACACACACACACAGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454073:706016-706117 - TC--------------------------------------------------------------------------------------------------------------------------------------------ACACAC----ACACAT--AT----A----------------------------------------------------------------------------------------------CACAAACACACATACACAAACACACAG----C------GCACTTTTATT---G-C----ACATA----TAT-G------------------------------------------------------------TGAAATTAGT-TTTTCGGTTA-------GCTTCTATT-GT-------------------------------TGTT
droEle1 scf7180000486984:15931-16076 + AT--------------------------------------------------------------------------------------------------------------------------------------------ATATAT----ATATAT--AT----AAATA--------------------------------------------------------------------------------------------TAAATATATATATATAAATATAAA-----------------TT----------------------------------------AGATTTTTCACTTTGCGAT-------ATATTAAAA---AAAA------GCGATTTTTACTTTTAATATA-------CAGAGTAGT-TTTATTGGTAATGTCTTTATAGTTAGGTTCCCAAAAT
droRho1 scf7180000771207:1741-1837 - CAC-T--------------------------------------------------------------------------------------------------------------------------------------------TAT--ATATGT----A----------------------------------------------------------------------------------------------------TATATAAATATATATATAATTAAATGTTTGCAC----CATAAGTTTTAC---A-T----AAAAAAA---AA-CTTTA-------------------------------------------------------TTTAA-------TTTTTATTTA-------TCAAC----------------------------------------TA
droBia1 scf7180000301565:56600-56718 - AT--------------------------------------------------------------------------------------------------------------------------------------------ATGTAT----ATGTAT--G----------------------------------------------------------------------------------------------------TATAAGTATATGTATATAATTAAATTCTTGCAC----CATAAGTT-TA-AG-T-T----AAAAA-----AT-CTTTA-------------------------------------------------------TTTAACTTCTTATTCTTAA--ACTGGTTACTGGTTAA-----------------------------TTTTTATATT
droTak1 scf7180000415829:757-845 - AT--------------------------------------------------------------------------------------------------------------------------------------------GCACAC----ACACAA--AC----GTA--------------------------------------------------------------------------------------------CACACGCATATACATATAATAAAATGTTTGCAC----CATAAGTTTAAT---A-T----AAAAAAA---AA-CTTTA-------------------------------------------------------TTTAA-------------------------------------------------------------------TTTA
droEug1 scf7180000407863:6391-6460 + AC--------------------------------------------------------------------------------------------------------------------------------------------ATACAT----ATGT----------------------------------------------------------------------------------------------------------------ACATATATATAATGAAATGCTTG-AACACTCGTA--------AGTT-T----AAAAATATATAT-T-------------------------------------------------------------T-------------------------------------------------------------------TATTTT
dm3 chrU:3727093-3727206 + AT--------------------------------------------------------------------------------------------------------------------------------------------AAATAT----GTATAC--AT----A----------------------------------------------------------------------------------------------TATATAGATATATATATAATTAAATGCTTGCAATATTTATA--------AG-T-G----AAAAAAATATAATTTTTA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------GAG
droSim2 x:944701-944787 - TTC-GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCTTTCTCCTCCTTCGACATCTTTGCATGTATGTACACTCG--------TGCATACATATGTATGTATGTACAATAGTATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTT
droSec2 scaffold_80:78150-78260 + CAT-A--------------------------------------------------------------------------------------------------------------------------------------------TAT----ATACAT--G----------------------------------------------------------------------------------------------------TATATGTATATGTATATAATTAAGTGTTTGCAATACTCATA--------AG-T-T----AAAAAAATATAA-TTTTA-------------------------------------TTTAACTGAATAATTACA---AA-----------------------------TAT---------------------------GGTTTTTGTTGA
droYak3 2R:16038912-16039054 + GTT-GCTGT-GGCAATGGAGGACGCTGGCTTTTGTAGCCG-------------AAGCGTGA-----ATTAA-------AATAAA--CTATTTAA-ATTTATT---TGCATCTGCT--------TAACTG-CGGC--CTGCA-TTGCAC--ACGCACAC--AC----ACACA------------------------------------------------------------------------------------------CACACACACACATGCGTGTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT
droEre2 scaffold_4784:22716015-22716103 - AT--------------------------------------------------------------------------------------------------------------------------------------------ATGTAT----ATATAT--AT----ATATA------------------------------------------------------------------------------------------TATATATATATATATATAATAACGAA--TCCAT----GGTAATTTTTTT---A-G----AAAAATA--TAT--A-------------------------------------------------------------AA-------------------------------------------------------------TTCTTTATTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCT-GCTCGTGACGC----TGA---------------CAGCGCTGCCCACTTTGTGCTCGGCACTG------ACTTGTAAGTACTCGTATCAGACAC--GCCAACTTCATCTTCT-------TCAGCTTGCAGCTACTTCA-TCATGCAC--ACACACACAC----ACA----TA--------------------------------------------------------------------------------------CATACATACATATATATAATTAAGTTT-TACAC----GTTAGGTT-ACT---A-T----AAAAAAATATAT-T------------------------------------------------------------TCAATTTATTATTTTCACTTA-------ACGGCTACT-TTTGTTGA---GTACATTCAGATTTGCTTCCCGAATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................TTTCACTTA-------ACGGCTACT-TTTGTTGA---G.........................27200.65130000000000000000000000001000300000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACTTA-------ACGGCTACT-TTTGTTG..............................21200.55110011000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCACTTA-------ACGGCTACT-TTTGTTG..............................24200.50100000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................T-TACAC----GTTAGGTT-ACT---A-T----AAAAAAATA............................................................................................................................................28200.408000000000000000000000000000000000080000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTCACTTA-------ACGGCTACT-TTTGTT...............................27200.357000000000000000000000000000700000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCACTTA-------ACGGCTACT-TTTGTTG..............................26200.255000000000000000000000000000000000005000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---GTACATTCAGATTTGCTTCCCGAA..26200.204000000000000000000000000000000000004000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GTACATTCAGATTTGCTTCCCGAAT.26200.153000300000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................T-TACAC----GTTAGGTT-ACT---A-T----AAAA.................................................................................................................................................23200.153000000000000000000000000003000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGA---GTACATTCAGATTTGC..........21200.102000000000000000000000000000000000000000000000000000000000000200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---GTACATTCAGATTTGCTTCCCGA...25200.102000000000000000000000000000000000002000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---GTACATTCAGATTTGCTTCCCG....24200.102000000000000000000000000002000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---GTACATTCAGATTTGCTTCCCGAATA28200.102000000000000000000000000000000002000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGA---GTACATTCAGATTTGCTTCC......27200.102000200000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................T-TACAC----GTTAGGTT-ACT---A-T----AAAAA................................................................................................................................................24200.102000000000000000000000000000000000000020000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------TCAATTTATTATTTTCACTTA-------ACGGC..........................................27200.102000000000000000000000000000020000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGA---GTACATTCAGATTTGCT.........24200.051000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................TAAGTTT-TACAC----GTTAGGTT-A.................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................TCACTTA-------ACGGCTACT-TTTGTTG..............................23200.051000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TA-------ACGGCTACT-TTTGTTGA---GTACATTC..................27200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGA---GTACATTCAGATTTGCT.........23200.051000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTAAGTTT-TACAC----GTTAGG.....................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTCACTTA-------ACGGCTACT-TTTGT................................27200.051000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCACTTA-------ACGGCTC........................................18200.051100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTCACTTA-------ACGGCTACT-TTTGT................................26200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................T-TACAC----GTTAGGTT-ACT---A-T----A....................................................................................................................................................20200.051000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TACT-TTTGTTGA---GTACATTCAGATTTGCT.........29200.051000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................................................................TTAAGTTT-TACAC----GTTAGGT....................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTCAGATTTGCTTCCCGA...21200.051000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................TAGGTT-ACT---A-T----AAAAAAATATAT-T------------------------------------------------------------TCAA.......................................................................28200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AC----GTTAGGTT-ACT---A-T----AAAAAAAT.............................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCACTTA-------ACGGCTACT-TTTGTTGG---..........................25200.051000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................T-T------------------------------------------------------------TCAATTTATTATTTTCACTTA-------ACG............................................26200.051000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................AAGTTT-TACAC----GTTAGGTT-ACT---A-T----AAAA.................................................................................................................................................28200.051000000000000000000000000001000000000000000000000000000000000000
droMoj3
AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTTT-TGCAC----GTTAGGTT-ACT---A-T----AAAAAAATATAT-T------------------------------------------------------------TCAATTTATTATTTTCACTTA-------ACGGCTACT-TTTGTTGA---GTACATTCAGATTTGCTTCCCGAATASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTTTGCTGC-----------------------------------------------------------------------------------------------------------------------------TGTGGCATAGACAC----ACACACACAC----ACA----TA--------------------------------------------------------------------------------------AATACACACACACACACACCTACACA----CAA-----GCAAGCTCAAT---TTA----TAAATAA--TAA-T----------------------------------------------------------------TTTGTTGTTGTCTGCTT-------ACAGGCGCC-GTTGTCGT---CTGCAGGCAAACT----------GGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GCT-GTTGATGATGA----TGATGGTGGCTTGTGTGGCAG---------CTCCAAGCTTGGCGCCAGTAAA-------AGCAAC--ATATTGAATATTGATG---CGCATCGATT-------TCGACTTGAAAC-------------------T----GCAAAAGTTCAG------------------------------------------------------------------------ACACGCACACACATA----CATACATATAGACGCACACTCGA-CATGCATAC----TCTTTGT--------TTATAATAAAAACA--T-T-------------------------------------------------------------TGCAATCTCTTATTACCACCAA-------TT------------------------------------------GGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CA--------------------------------------------------------------------------------------------------------------------------------------------CCACAC----ACACAC--AC----ACACACAAAGAGAGAGAGATAGGTATAATTCGGGGTGTAAATTATTTCGT---------------------------------------------------------------------TATTTGC-----------------T---A-T----AACAATTCGTA--------------------------------------------------------------TACAAATTTTGATATTTATTTA-------AAGGTCTTT-CATGTTAC---GA-AATT-------------TAGATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AC--------------------------------------------------------------------------------------------------------------------------------------------ATACAT----ATGCAT--AT----ACATA--------------------------------------------------------------------------------------------TATGTATATATATACACGTATAG------GC----CATACACAT------------------AGTGCAA-T----------------------------GCAATTCATTGCATTCAAATGACTGATT------AA-----------------------------TAT---------------------------TTTTTTTTAGTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AT--------------------------------------------------------------------------------------------------------------------------------------------ATA----------------------------------------------------------------------------------------------------------------------------------TATAATTAAATATCTTCTT-----CAAAAAT-A--GT-T-T----GAAAAAATATAT-TTTTATTTGAGTTCCGTTTTTGATTCAGTGTG---------------------------------------------------------------ATT-TTTTTTAA---AACTGCTTAGAAT---TTTTGGAGTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................TATAT-TTTTATTTGAGTTCCGTTTT....................................................................................................................25200.153300000
........................................................................................................................................................................................................................................................................................................................................ATAT-TTTTATTTGAGTTCCGTT......................................................................................................................22200.102200000
.......................................................................................................................................................................................................................................................................................................................................TATAT-TTTTATTTGAGTTCCGTT......................................................................................................................23200.051001000
droBip1
ATT-T--------------------------------------------------------------------------------------------------------------------------------------------TATATACATACTT--AT----ATA----GA--------------------------------------------------------------------------------------TATATATATATATATATAATTATATATCTTTTT-----CAAAATT-A--GATTTA----AAAAAAATATAT-TTTTA--------------------------------------------------------------------------------------------------------------------------------TTTSizeHit CountTotal NormTotal
No Reads
droKik1
GCC-GCTGC----TT----TGG---------------CTGCTCCACTTGTTGTTTGGCCAAC------AAATTTTTACAGCCAG--CCATTGTGCAGTGAGGGACGCAGCTCTCGCCGGCTGTCAACTC-----------------TC--ACTT----GCACACATGGAC------------------------------------------------------------------------ACTCG--------------CACACACACACACACACAGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TC--------------------------------------------------------------------------------------------------------------------------------------------ACACAC----ACACAT--AT----A----------------------------------------------------------------------------------------------CACAAACACACATACACAAACACACAG----C------GCACTTTTATT---G-C----ACATA----TAT-G------------------------------------------------------------TGAAATTAGT-TTTTCGGTTA-------GCTTCTATT-GT-------------------------------TGTTSizeHit CountTotal NormTotal
No Reads
droEle1
AT--------------------------------------------------------------------------------------------------------------------------------------------ATATAT----ATATAT--AT----AAATA--------------------------------------------------------------------------------------------TAAATATATATATATAAATATAAA-----------------TT----------------------------------------AGATTTTTCACTTTGCGAT-------ATATTAAAA---AAAA------GCGATTTTTACTTTTAATATA-------CAGAGTAGT-TTTATTGGTAATGTCTTTATAGTTAGGTTCCCAAAATSizeHit CountTotal NormTotal
No Reads
droRho1
CAC-T--------------------------------------------------------------------------------------------------------------------------------------------TAT--ATATGT----A----------------------------------------------------------------------------------------------------TATATAAATATATATATAATTAAATGTTTGCAC----CATAAGTTTTAC---A-T----AAAAAAA---AA-CTTTA-------------------------------------------------------TTTAA-------TTTTTATTTA-------TCAAC----------------------------------------TASizeHit CountTotal NormTotal
No Reads
droBia1
AT--------------------------------------------------------------------------------------------------------------------------------------------ATGTAT----ATGTAT--G----------------------------------------------------------------------------------------------------TATAAGTATATGTATATAATTAAATTCTTGCAC----CATAAGTT-TA-AG-T-T----AAAAA-----AT-CTTTA-------------------------------------------------------TTTAACTTCTTATTCTTAA--ACTGGTTACTGGTTAA-----------------------------TTTTTATATTSizeHit CountTotal NormTotal
No Reads
droTak1
AT--------------------------------------------------------------------------------------------------------------------------------------------GCACAC----ACACAA--AC----GTA--------------------------------------------------------------------------------------------CACACGCATATACATATAATAAAATGTTTGCAC----CATAAGTTTAAT---A-T----AAAAAAA---AA-CTTTA-------------------------------------------------------TTTAA-------------------------------------------------------------------TTTASizeHit CountTotal NormTotal
No Reads
droEug1
AC--------------------------------------------------------------------------------------------------------------------------------------------ATACAT----ATGT----------------------------------------------------------------------------------------------------------------ACATATATATAATGAAATGCTTG-AACACTCGTA--------AGTT-T----AAAAATATATAT-T-------------------------------------------------------------T-------------------------------------------------------------------TATTTTSizeHit CountTotal NormTotal
No Reads
dm3
AT--------------------------------------------------------------------------------------------------------------------------------------------AAATAT----GTATAC--AT----A----------------------------------------------------------------------------------------------TATATAGATATATATATAATTAAATGCTTGCAATATTTATA--------AG-T-G----AAAAAAATATAATTTTTA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------GAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................TATAATTTTTA-------------------------------------TTTCACTAAATGTT................................................................................2543.751500000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001100010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TAAATGCTTGCAATATTTATA--------AG-T-G----AAA..................................................................................................................................................28203.60720000000000000000000000000000000000000000000000000000000000000000000000000000022290210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CACTAAATGTTTA-------------------------------CAAA-ACTTTTTAGT................................2733.33100000000000000000000000000000000000000000000000000000000000000000000000000000001360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCACTAAATGTTTA-------------------------------CAAA-ACTTTTTAGT................................2833.33100000000000000000000000000000000000000000000000000000000000000000000000000000003330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TAAATGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------GA.2733.33100000000000000000000000000000000000000000000000000000000000000000000000000000001420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-ACT.......................................2533.33100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................TAAATGCTTGCAATATTTATA--------AG-T-G----A....................................................................................................................................................26202.905800000000000000000000000000000000000000000001000000000000000000000000000000000402100000000000000000000000000300000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000004230010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-ACTTT.....................................2732.6780000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................TTTTTA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-AC........................................2832.3370000000000000000000000000000000000000000000000000000000000000000000000000000002220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTCACTAAATGTTTA-------------------------------CAAA-ACTTT.....................................2532.3370000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010400010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TAATTTTTA-------------------------------------TTTCACTAAATGTT................................................................................2342.2590000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000602000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTAAATGCTTGCAATATTTATA--------AG-T-..........................................................................................................................................................25201.703400000000000000000000000000000000000000010100000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000100000000000202300010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................TTCACTAAATGTTTA-------------------------------CAAA-ACTTT.....................................2431.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TTTTA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-AC........................................2731.6750000000000000000000000000000000000000000000000000000000000000000000000000000001210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AATTAAATGCTTGCAATATTTATA--------AG-T-..........................................................................................................................................................27201.553100000000000000000000000000000000000000000000000001000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000501102050000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTTA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-AC........................................2631.3340000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATATAGATATATATATAATTAAATGCT....................................................................................................................................................................................2831.3340000000000000000000000000000000000000000000000000000000000000000000000000000000220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TAGATATATATATAATTAAATGCT....................................................................................................................................................................................2431.0030000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-ACTTT.....................................2831.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................A-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-ACTTT.....................................2631.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-ACTT......................................2631.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-AC........................................2431.0030000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTAAATGCTTGCAATATTTATA--------AG-T-G----AAA..................................................................................................................................................29200.90180000000000000000000000000000000000000000000000000000000000000000000000000000064340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TA--------AG-T-G----AAAAAAATATAATTTTTA-------------------------------------TT............................................................................................26200.851700000000000000000000000000000000000000000000000010001000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TAAATGCTTGCAATATTTATA--------AG-T-..........................................................................................................................................................24200.851700000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000000101000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................TGCTTGCAATATTTATA--------AG-T-G----AAA..................................................................................................................................................24200.85170000000000000000000000000000000000000000000000000000000000000000000000000000025620000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TAATTAAATGCTTGCAATATTTATA--------AG-T-..........................................................................................................................................................28160.69110000000000000000000000000000000000000000000000000000000000000000000000000000012120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000220010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-ACT.......................................2630.6720000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTCACTAAATGTTTA-------------------------------CAAA-ACTTTT....................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-AC........................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCACTAAATGTTTA-------------------------------CAAA-ACTTT.....................................2330.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATATAGATATATATATAATTAAATGC.....................................................................................................................................................................................2730.6720000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................ACTAAATGTTTA-------------------------------CAAA-ACTTTTTAGT................................2630.6720000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAATGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------GAT2730.6720000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TAGATATATATATAATTAAATGCTTGCAA...............................................................................................................................................................................2930.6720000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TAAATGCTTGCAATATTTATA--------AG-T-G----.....................................................................................................................................................25200.651300000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTAAATGCTTGCAATATTTATA--------AG-T-G----AA...................................................................................................................................................28200.55110000000000000000000000000000000000000000000000000000000000000000000000000000052040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AATATAATTTTTA-------------------------------------TTTCACTAAATGTT................................................................................2740.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTAAATGCTTGCAATATTTATA--------AG-T-G----A....................................................................................................................................................27200.4590000000000000000000000000000000000000000000000000000000000000000000000000000010110000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000010201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTAAATGCTTGCAATATTTATA--------AG-T-G----.....................................................................................................................................................26200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTAAATGCTTGCAATATTTATA--------AG-T-G----AAAA.................................................................................................................................................30200.4590000000000000000000000000000000000000000000000000000000000000000000000000000041040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TAAATGCTTGCAATATTTATA--------AG-T-G----AA...................................................................................................................................................27200.4590000000000000000000000000000000000000000000000000000000000000000000000000000035010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TATATATAATTAAATGCTTGCAATATT...........................................................................................................................................................................27120.4250000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TTATA--------AG-T-G----AAAAAAATATAATTTT.....................................................................................................................................25200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000600010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TAAATGCTTGCAATATTTATA--------AG-T-G----AAAA.................................................................................................................................................29200.4080000000000000000000000000000000000000000000000000000000000000000000000000000031130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TGCTTGCAATATTTATA--------AG-T-G----AAAAAAA..............................................................................................................................................28200.3570000000000000000000000000000000000000000000000000000000000000000000000000000020210000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TAAATGTTTA-------------------------------CAAA-ACTTTTTAGT................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CACTAAATGTTTA-------------------------------CAAA-ACTTTTTAGTG----------------------------...2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATATAGATATATATATAATT...........................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCACTAAATGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------...2930.3310000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTCACTAAATGTTTA-------------------------------CAAA-ACTTTA....................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTCACTAAATGTTTA-------------------------------CAAA-ACTTTTTA..................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CTAAATGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------GA.2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................A-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-ACT.......................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TATAGATATATATATAATTAAATGCT....................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCACTAAATGTTTA-------------------------------CAAA-ACTTTTTA..................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TAAATGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------GAG2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTCACTAAATGTTTA-------------------------------CAAA-ACTTTT....................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................TTCACTAAATGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------...3030.3310000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATATAGATATATATATAATTAAA........................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------GA.2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TAGATATATATATAATTAAATGCTTGCAAT..............................................................................................................................................................................3030.3310000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCACTAAATGTTTA-------------------------------CAAA-ACTTTTTAG.................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................T----A----------------------------------------------------------------------------------------------TATATAGATATATATATAATT...........................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTTA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-ACT.......................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------GAG2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................ATTTTTA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-AC........................................2930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TATAGATATATATATAATTAAATGC.....................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TAAATGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------GT.2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAATGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------GA.2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CACTAAATGTTTA-------------------------------CAAA-ACTTTTTAGTT----------------------------GA.3030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTTA-------------------------------------TTTCACTAAATGTTTA-------------------------------CAAA-ACTTT.....................................2930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
TTC-GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCTTTCTCCTCCTTCGACATCTTTGCATGTATGTACACTCG--------TGCATACATATGTATGTATGTACAATAGTATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CAT-A--------------------------------------------------------------------------------------------------------------------------------------------TAT----ATACAT--G----------------------------------------------------------------------------------------------------TATATGTATATGTATATAATTAAGTGTTTGCAATACTCATA--------AG-T-T----AAAAAAATATAA-TTTTA-------------------------------------TTTAACTGAATAATTACA---AA-----------------------------TAT---------------------------GGTTTTTGTTGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................TAAGTGTTTGCAATACTCATA--------AG-T-..........................................................................................................................................................24100.1011000
........................................................................................................................................................................................................................................................................................TTAAGTGTTTGCAATACTCATA--------AG-T-..........................................................................................................................................................25100.1011000
........................................................................................................................................................................................................................................................................................TTAAGTGTTTGCAATACTCA.........................................................................................................................................................................20100.1011000
.................................................................................................................................................................................................................................................................................................TGCAATACTCATA--------AG-T-T----AAAAAAATA............................................................................................................................................26140.0711000
...................................................................................................................................................................................................................................................................................................CAATACTCATA--------AG-T-T----AAAAAAATA............................................................................................................................................24140.0711000
...................................................................................................................................................................................................................................................................................................CAATACTCATA--------AG-T-T----AAAAAAATATAA-........................................................................................................................................27140.0711000
...................................................................................................................................................................................................................................................................................................CAATACTCATA--------AG-T-T----AAAAAAATAT...........................................................................................................................................25140.0711000
.........................................................................................................................................................................................................................................................................................................................................TAA-TTTTA-------------------------------------TTTAACTGAATAAT................................................................................22170.0611000
.........................................................................................................................................................................................................................................................................................................................................TAA-TTTTA-------------------------------------TTTAACTGAATAATT...............................................................................23170.0611000
................................................................................................................................................................................................................................................................................................................................................TA-------------------------------------TTTAACTGAATAATTACA---AA-----------------------------TAT---------------------------GG..........27190.0511000
...........................................................................................................................................................................................................................................................................................................................................................................................ACTGAATAATTACA---AA-----------------------------TAT---------------------------GG..........21190.0511000
.................................................................................................................................................................................................................................................................................................................................................A-------------------------------------TTTAACTGAATAATTACA---AA-----------------------------TAT---------------------------GGT.........27190.0511000
................................................................................................................................................................................................................................................................................................................................................................................................ATAATTACA---AA-----------------------------TAT---------------------------GGTTTTTGT...23190.0511000
.........................................................................................................................................................................................................................................................................................................................................................................................TAACTGAATAATTACA---AA-----------------------------TAT---------------------------GC..........23200.0511000
droYak3
GTT-GCTGT-GGCAATGGAGGACGCTGGCTTTTGTAGCCG-------------AAGCGTGA-----ATTAA-------AATAAA--CTATTTAA-ATTTATT---TGCATCTGCT--------TAACTG-CGGC--CTGCA-TTGCAC--ACGCACAC--AC----ACACA------------------------------------------------------------------------------------------CACACACACACATGCGTGTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......TGT-GGCAATGGAGGACGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEre2
AT--------------------------------------------------------------------------------------------------------------------------------------------ATGTAT----ATATAT--AT----ATATA------------------------------------------------------------------------------------------TATATATATATATATATAATAACGAA--TCCAT----GGTAATTTTTTT---A-G----AAAAATA--TAT--A-------------------------------------------------------------AA-------------------------------------------------------------TTCTTTATTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 09:51 PM