dvi_2784

Name	Class	Family	Strand
DMR_DV	Unknown	Unknown	-

Species	Coordinate	ID	Alignment
droVir3	scaffold_12822:4014037-4014287 +	dvi_2784	ATAACTCCCCGCGGA-GA---TATGACCTCCATCACGATTTTTTCAAAATCGAGGTCGGTGCG--------AAAATCGAA------------------ACATTTTCGATGATTTATTTTAATATCTCGGGTAAATAATATCTGATTTT-----------------------------A-AAAT-------------------GTTATACCTTTTTGAATGCGTACGGATCCCTAC-----------------------------------CATCAATTGGCATTCAAACA-----------------------------------------------------------------------------AATTA-----ATCATCGATGGGTTGAAAAATGTTGTTGCCAAAAAACCGATT------TGT--------------TCGTAAATTCAACCCT-T-TTCATGAT--
droWil2	scf2_1100000004936:432041-432260 +		TTTCTAACG-GCGGA-GA---TATGACG---------------------------------------------------------------TTTTGAAACGTTTTG-------------------------------------------AAACGACATATCTCCGCGCAGATCACCG-GCGATGATATGTCGTTTTACAA-CGACATATCTTTTTTTACA--ACGACATATCTCCGCCGTTAAAAATGCGACATATCTCC-G--------------------------CC------------------------------AGAAAAATGTACTGGGCGGAG-----------------------------------------------------ATATGTCGTCGGAGATATGTCGCTATGCCAT---------------------TTGTTCGCC-TT-C-TTCAAGAT--
dp5	Unknown_group_169:7430-7500 +		ATAGCTCCGCGCGGA-GA---TATGT---------------------------------------------------------------CATT------------------TGTTAAAC----------GGCGGAGATGTTTCGTTTT-----------------------------A-AAGC-------------------GATATATCTCC------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--
droPer2	scaffold_11:782764-782794 -		-----------CGGA-GA---TATGT---------------------------------------------------------------CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACCCCGT---------------------T----------------CAAAGTCG
droKik1	scf7180000299347:5997-6169 +		ATATCTCCGCGCGGA-GA---AACAGTGACGAACTTA-----------------------------------------------------ATT------------------TGTGGCAC----------AGTTGGCATGTCTGACTTT-------------------------------------------------------------------------GGCACCGTTTTTCTGC------------------------A-----TTAAATATAGCAATGTTTTCTTAAATCAAATTTTATT--AAAATA-------------------------------------------------------TATTG-----ATCAA-------------T-------TTCCAAC------TAA------TGT--------------TAATGAATCCACC-TTATAGTCCGGAC--
droFic1	scf7180000453858:776652-776808 +		ATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GAAT-------------------GTTATGCCTTTTCGAACTCGTAATGACATTTCT-----------------------------------CATCGACTGGCATTCAAATTTGAAAAATTTTATTTTTGTCCAATTTTTGCAAA------------A---------AATGAT--------------------T-----AACAA------------AAATA-------CAGT-----TTTG------CGTTATCCGAAAATAGCGACGAAAATA---------GCCGTAAC--
droEle1	scf7180000490474:18896-18954 +		GCTGGCTTTCATGGATGA---AACAACTCAGATGAAGAACTTTTCGCAGTCGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGCTAC--
droRho1	scf7180000764558:294-545 -		AAACATG-----------ACCCCCACCC----------TTATGACAAGACCCAAATCCG-GAG--------AAAATCGCA------------------ACGATTTTTCAGGTTTTTAATCAAAACCCTGAGAAATAGTGGTCGGTGTT-----------------------------G-GAAT-------------------GGCATACCTCCTTGAATTTGTTACCAAATTTCC-----------------------------------AACAAAGTGGCATTTACACAAAAAAAATATCATT--TGAACAAATTTTTCCAA------------A---------AAAGAT--------------------G-----AC------------------CC-------CACC-----CTTA------TGACAACGCCAAAATCCGAAGAAAATCACC-TCAATTTTTGGTA--
droBia1	scf7180000299101:14199-14430 +		ATATTTCCGCGCGGA-GA---TATGACG--------------TTT------------------------------------------------------------------------------------------------------CAAGACGACATATCTCCGCGCGGAGTACCA-----------------------------------------------------TCTCCGCCGATTAATTAGCAACTCATCATCCAATAGATTAAATTT---AATGTTTTTTTTAAATTAATTTC---------------ATACAGA------------AAGTTGAATAGAAAAT---------CTTAATAATTTAACGATAATATCAATCCCTTAAAAAATGCAGTTTCCCAAAAGTCTTTT------T----------------AAGTATAT-GTATTAT-T-TTTATTAA--
droTak1	scf7180000411175:7380-7593 +		ATATG--------GA-GAACTTTTGACG--------------TTTAAAAGTGACATAAGTCCTCAGATCAAAAAACCATA------------------TAATTTCTCCAGCCGAGAAATTATGTCTCTGCGAAATGACATTAGATCGC-----------------------------G-CGAA-------------------ATTATGTCGTTTAAAAA--------------------------------------------------------------------------TGAGTATACCA--TACATA-----------------------T---------ATAGGTATATATATA-------TATGT-----ATTATATGTAAGGTACTGGGCCTGGTT-----------TATT------TAT--------------TAGTA--------------AATAAGAT--
droYak3	v2_chrUn_1329:7100-7171 -		ATATGTC-GCGAGGA-CA---CATTT---------------------------------------------------------------CG-------------------------------------------------------------------------------------------------------TTACCCCCTACCAATTATC------------------------------------------------C-----------------------------------------------------------AAAAATCATTCTGGATGGAGAAAA-----------------------------------------------------------------------------------------------------------------------CGAAA--
droEre2	scaffold_4690:18025020-18025113 +		ATAACTCCACC------------------------------------------------------AATAAGAAAAGGACGGAGATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATTCAAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACCTATT--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ATAACTCCCCGCGGA-GA---TATGACCTCCATCACGATTTTTTCAAAATCGAGGTCGGTGCG--------AAAATCGAA------------------ACATTTTCGATGATTTATTTTAATATCTCGGGTAAATAATATCTGATTTT-----------------------------A-AAAT-------------------GTTATACCTTTTTGAATGCGTACGGATCCCTAC-----------------------------------CATCAATTGGCATTCAAACA-----------------------------------------------------------------------------AATTA-----ATCATCGATGGGTTGAAAAATGTTGTTGCCAAAAAACCGATT------TGT--------------TCGTAAATTCAACCCT-T-TTCATGAT--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................TTATACCTTTTTGAATGCGTACGGAT..................................................................................................................................................................................................................................................	26	20	2.80	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39	0	0	13	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TA-----ATCATCGATGGGTTGAAAAATGT.......................................................................	25	20	1.20	24	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTATACCTTTTTGAATGCGTACGG....................................................................................................................................................................................................................................................	24	20	1.05	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTATACCTTTTTGAATGCGTACGGA...................................................................................................................................................................................................................................................	25	20	1.00	20	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TA-----ATCATCGATGGGTTGAAAAATG........................................................................	24	20	0.60	12	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT------TGT--------------TCGTAAATTCAACCCT-T-TTCA......	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTATACCTTTTTGAATGCGTACGGATCCC...............................................................................................................................................................................................................................................	29	20	0.45	9	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3
......................................................................................................................................................................................................................TGAATGCGTACGGATCCCTAC-----------------------------------CAT......................................................................................................................................................................................................	24	20	0.35	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TTCAAACA-----------------------------------------------------------------------------AATTA-----ATCATCGATGGGT.................................................................................	26	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................TATACCTTTTTGAATGCGTACGG....................................................................................................................................................................................................................................................	23	20	0.35	7	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGATGGGTTGAAAAATGTTGTTGCC................................................................	26	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................T-------------------GTTATACCTTTTTGAATGCGTACG.....................................................................................................................................................................................................................................................	25	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TCATCGATGGGTTGAAAAATGTTG.....................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TTA-----ATCATCGATGGGTTGAAAAATG........................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................T-------------------GTTATACCTTTTTGAATGCGTAC......................................................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TTA-----ATCATCGATGGGTTGAAAAATGT.......................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGATGGGTTGAAAAATGTTGTTG..................................................................	24	20	0.15	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCAAAATCGAGGTCGGTGCG--------AAAA............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TA-----ATCATCGATGGGTTGAAAAAT.........................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TTTTTCAAAATCGAGGTCGGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TGAATGCGTACGGATCCCTAC-----------------------------------.........................................................................................................................................................................................................	21	20	0.15	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................ACA-----------------------------------------------------------------------------AATTA-----ATCATCGATGGGTTGAAAA...........................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTTTGAATGCGTACGGATCCCTAC-----------------------------------CA.......................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CGAGGTCGGTGCG--------AAAATCG.........................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TA-----ATCATCGATGGGTTGAAAA...........................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AAATCGAGGTCGGTGCG--------AAA.............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTTTGAATGCGTACGGATCCC...............................................................................................................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................ACA-----------------------------------------------------------------------------AATTA-----ATCATCGATGGGT.................................................................................	21	20	0.10	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................A-AAAT-------------------GTTATACCTTTTTGAATGCGTAC......................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTTGAATGCGTACGGATCCCTAC-----------------------------------CATC.....................................................................................................................................................................................................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TATACCTTTTTGAATGCGTACGGATC.................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................A-----ATCATCGATGGGTTGAAAAATGTTG.....................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................T-------------------GTTATACCTTTTTGAATGCGTACGGAT..................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................ATACCTTTTTGAATGCGTACGGATCC................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ACCTTTTTGAATGCGTACGGA...................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TCGGTGCG--------AAAATCGAA------------------ACATTT...............................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ACCTTTTTGAATGCGTACGGATCCCTA.............................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TCATCGATGGGTTGAAAAATGTTGTTG..................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TACGGATCCCTAC-----------------------------------CATCAATTGGCAT............................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TACGGATCCCTAC-----------------------------------CATCAATTGGCATT...........................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GTTATACCTTTTTGAATGCGTACGGA...................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TATACCTTTTTGAATGCGTACGGA...................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................CAAACA-----------------------------------------------------------------------------AATTA-----ATCATCGATG....................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTATACCTTTTTGAATGCGTACGGATC.................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TGAATGCGTACGGATCCCTAC-----------------------------------CATC.....................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTATACCTTTTTGAATGCGTACGGC...................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CAAAATCGAGGTCGGTGCG--------AAAATCGAA------------------.....................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGATGGGTTGAAAAATGTTGT....................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTATACCTTTTTGAATGCGTAC......................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................CATCAATTGGCATTCAAACA-----------------------------------------------------------------------------AATTA-----ATCG..........................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCAAAATCGAGGTCGGTGCG--------AAAATCG.........................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CCTTTTTGAATGCGTACGGATC.................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTTGAATGCGTACGGATCCCTAC-----------------------------------CAT......................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TGAATGCGTACGGATCCCT..............................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTTTGAATGCGTACGGATCCCTAC-----------------------------------.........................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TTTTTCAAAATCGAGGTCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGCGTACGGATCCCTAC-----------------------------------CATCAAT..................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GTACGGATCCCTAC-----------------------------------CATCAATTGGC..............................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GCATTCAAACA-----------------------------------------------------------------------------AATTA-----ATCATCGATGGGT.................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................TCATCGATGGGTTGAAAAATGTTGT....................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TCGGTGCG--------AAAATCGAA------------------ACATTTTCG............................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TCGAGGTCGGTGCG--------AAAATCGAA------------------.....................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TATACCTTTTTGAATGCGTACGGATCCC...............................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CAATTGGCATTCAAACA-----------------------------------------------------------------------------AATTA-----ATCAT.........................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................A-----ATCATCGATGGGTTGAAAAATGT.......................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AAAATCGAGGTCGGTGCG--------AAAATCGA........................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ACCTTTTTGAATGCGTACGG....................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATCAATTGGCATTCAAACA-----------------------------------------------------------------------------AA......................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TCGGGTAAATAATATCTGAT......................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................CAATTGGCATTCAAACA-----------------------------------------------------------------------------AATTA-----AT............................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGATGGGTTGAAAAATGTT......................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AAAT-------------------GTTATACCTTTTTGAATGCGTAC......................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................T-------------------GTTATACCTTTTTGAATGCGTACGGA...................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TCAATTGGCATTCAAACA-----------------------------------------------------------------------------AAT.....................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TCAATTGGCATTCAAACA-----------------------------------------------------------------------------AATTA-----ATCAT.........................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TTCAAAATCGAGGTCGGTGCG--------................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................ATTA-----ATCATCGATGGGTTGAA.............................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TTA-----ATCATCGATGGGTTGA..............................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TA-----ATCATCGATGGGTTGAAAAATGTTGT....................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TA-----ATCATCGATGGGTTGAAAAATGTTG.....................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................CGGTGCG--------AAAATCGAA------------------ACATTTTC.............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TGAATGCGTACGGATCCCTAC-----------------------------------CATCAA...................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGATGGGTTGAAAAATGTTGTT...................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TT-----------------------------A-AAAT-------------------GTTATACCTTTTTGAATGCGT........................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CCTTTTTGAATGCGTACGGATCCCTAC-----------------------------------C........................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CTTTTTGAATGCGTACGGATC.................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................TTTTTGAATGCGTACGGA...................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TAATATCTGATTTT-----------------------------A-AAAT-------------------G............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droWil2

TTTCTAACG-GCGGA-GA---TATGACG---------------------------------------------------------------TTTTGAAACGTTTTG-------------------------------------------AAACGACATATCTCCGCGCAGATCACCG-GCGATGATATGTCGTTTTACAA-CGACATATCTTTTTTTACA--ACGACATATCTCCGCCGTTAAAAATGCGACATATCTCC-G--------------------------CC------------------------------AGAAAAATGTACTGGGCGGAG-----------------------------------------------------ATATGTCGTCGGAGATATGTCGCTATGCCAT---------------------TTGTTCGCC-TT-C-TTCAAGAT--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................TATGTCGCTATGCCAT---------------------TTGTTCG..................	23	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................TATCTTTTTTTACA--ACGACATATCTCCG...........................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
........................................................................................................TG-------------------------------------------AAACGACATATCTCCGCGCAG.............................................................................................................................................................................................................................................................................................................	23	19	0.16	3	0	3	0	0	0
.................................................................................................................................................................................................................................................................................................................................GAAAAATGTACTGGGCGGAG-----------------------------------------------------ATA..........................................................................	23	20	0.15	3	0	3	0	0	0
.................................................................................................................................................................................................................................................................................................................................GAAAAATGTACTGGGCGGAG-----------------------------------------------------ATATGT.......................................................................	26	20	0.10	2	0	1	0	1	0
........................................................................................................TG-------------------------------------------AAACGACATATCTCCGCGCAGAT...........................................................................................................................................................................................................................................................................................................	25	18	0.06	1	0	0	0	1	0
......................................................................................................TTTG-------------------------------------------AAACGACATATCTCCGCGCAGG............................................................................................................................................................................................................................................................................................................	26	19	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................AAAAATGTACTGGGCGGAG-----------------------------------------------------ATATG........................................................................	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTCGGAGATATGTCGCTAT...................................................	23	20	0.05	1	0	0	1	0	0
.....................................................................................................................................................AAACGACATATCTCCGCGCA..............................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
...................................................................................................CGTTTTG-------------------------------------------AAACGACATATCTCCG..................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................AAATGTACTGGGCGGAG-----------------------------------------------------ATATG........................................................................	22	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................AAATGTACTGGGCGGAG-----------------------------------------------------ATATGTCG.....................................................................	25	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CTGGGCGGAG-----------------------------------------------------ATATGTCGTCGGAGA..............................................................	25	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................TATCTCC-G--------------------------CC------------------------------AGAAAAATGTACTGGGC......................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................TATCTCC-G--------------------------CC------------------------------AGAAAAATGTACTGGG.......................................................................................................................................	26	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CTGGGCGGAG-----------------------------------------------------ATATGTCGTCGG.................................................................	22	20	0.05	1	0	1	0	0	0
................................................................................................................................................................CTCCGCGCAGATCACCG-GC...................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................GAAAAATGTACTGGGCGGAG-----------------------------------------------------A............................................................................	21	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................TATCTCC-G--------------------------CC------------------------------AGAAAAATGTACTGG........................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................AAATGTACTGGGCGGAG-----------------------------------------------------ATATGTCT.....................................................................	25	20	0.05	1	0	0	0	1	0

dp5

ATAGCTCCGCGCGGA-GA---TATGT---------------------------------------------------------------CATT------------------TGTTAAAC----------GGCGGAGATGTTTCGTTTT-----------------------------A-AAGC-------------------GATATATCTCC------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................TTTT-----------------------------A-AAGC-------------------GATATATCTCC------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
ATAGCTCCGCGCGGA-GA---TATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.TAGCTCCGCGCGGA-GA---TATGT---------------------------------------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.TAGCTCCGCGCGGA-GA---TATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.TAGCTCCGCGCGGA-GA---TATGT---------------------------------------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0

droPer2

-----------CGGA-GA---TATGT---------------------------------------------------------------CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACCCCGT---------------------T----------------CAAAGTCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droKik1

ATATCTCCGCGCGGA-GA---AACAGTGACGAACTTA-----------------------------------------------------ATT------------------TGTGGCAC----------AGTTGGCATGTCTGACTTT-------------------------------------------------------------------------GGCACCGTTTTTCTGC------------------------A-----TTAAATATAGCAATGTTTTCTTAAATCAAATTTTATT--AAAATA-------------------------------------------------------TATTG-----ATCAA-------------T-------TTCCAAC------TAA------TGT--------------TAATGAATCCACC-TTATAGTCCGGAC--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-GAAT-------------------GTTATGCCTTTTCGAACTCGTAATGACATTTCT-----------------------------------CATCGACTGGCATTCAAATTTGAAAAATTTTATTTTTGTCCAATTTTTGCAAA------------A---------AATGAT--------------------T-----AACAA------------AAATA-------CAGT-----TTTG------CGTTATCCGAAAATAGCGACGAAAATA---------GCCGTAAC--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCTGGCTTTCATGGATGA---AACAACTCAGATGAAGAACTTTTCGCAGTCGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGCTAC--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAACATG-----------ACCCCCACCC----------TTATGACAAGACCCAAATCCG-GAG--------AAAATCGCA------------------ACGATTTTTCAGGTTTTTAATCAAAACCCTGAGAAATAGTGGTCGGTGTT-----------------------------G-GAAT-------------------GGCATACCTCCTTGAATTTGTTACCAAATTTCC-----------------------------------AACAAAGTGGCATTTACACAAAAAAAATATCATT--TGAACAAATTTTTCCAA------------A---------AAAGAT--------------------G-----AC------------------CC-------CACC-----CTTA------TGACAACGCCAAAATCCGAAGAAAATCACC-TCAATTTTTGGTA--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATATTTCCGCGCGGA-GA---TATGACG--------------TTT------------------------------------------------------------------------------------------------------CAAGACGACATATCTCCGCGCGGAGTACCA-----------------------------------------------------TCTCCGCCGATTAATTAGCAACTCATCATCCAATAGATTAAATTT---AATGTTTTTTTTAAATTAATTTC---------------ATACAGA------------AAGTTGAATAGAAAAT---------CTTAATAATTTAACGATAATATCAATCCCTTAAAAAATGCAGTTTCCCAAAAGTCTTTT------T----------------AAGTATAT-GTATTAT-T-TTTATTAA--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATATG--------GA-GAACTTTTGACG--------------TTTAAAAGTGACATAAGTCCTCAGATCAAAAAACCATA------------------TAATTTCTCCAGCCGAGAAATTATGTCTCTGCGAAATGACATTAGATCGC-----------------------------G-CGAA-------------------ATTATGTCGTTTAAAAA--------------------------------------------------------------------------TGAGTATACCA--TACATA-----------------------T---------ATAGGTATATATATA-------TATGT-----ATTATATGTAAGGTACTGGGCCTGGTT-----------TATT------TAT--------------TAGTA--------------AATAAGAT--	Size	Hit Count	Total Norm	Total
No Reads

droYak3

ATATGTC-GCGAGGA-CA---CATTT---------------------------------------------------------------CG-------------------------------------------------------------------------------------------------------TTACCCCCTACCAATTATC------------------------------------------------C-----------------------------------------------------------AAAAATCATTCTGGATGGAGAAAA-----------------------------------------------------------------------------------------------------------------------CGAAA--

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

ATAACTCCACC------------------------------------------------------AATAAGAAAAGGACGGAGATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATTCAAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACCTATT--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................TATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGA..............................................................................................................................................................................................................................................................................................	25	1	437.00	437	49	0	0	0	3	0	385
....................................................................................TATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATA............................................................................................................................................................................................................................................................................................	27	1	249.00	249	29	0	0	0	5	0	215
......................................................................................TGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATA............................................................................................................................................................................................................................................................................................	25	1	85.00	85	13	0	0	0	0	0	72
................................................................................................................TTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGAT.....................................................................................................................................................................................................................................................................................	24	1	76.00	76	25	0	0	0	15	0	36
....................................................................................TATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGAT.............................................................................................................................................................................................................................................................................................	26	1	76.00	76	7	0	0	0	0	0	69
...................................................................TAAGAAAAGGACGGAGATATGTCGAG------------------T.......................................................................................................................................................................................................................................................................................................................................................................	27	1	47.00	47	20	0	0	0	4	0	23
.....TCCACC------------------------------------------------------AATAAGAAAAGGACGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................	25	1	46.00	46	33	0	0	0	4	0	9
.................................................................................................................TA---------------------------GTTCG-------------------------------CCGAGGATATGTCGAT.....................................................................................................................................................................................................................................................................................	23	1	25.00	25	9	0	0	0	0	0	16
....................................................................................TATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGG...............................................................................................................................................................................................................................................................................................	24	1	25.00	25	10	0	0	0	0	0	15
......................................................................................TGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGAT.............................................................................................................................................................................................................................................................................................	24	1	24.00	24	0	0	0	0	0	0	24
.................................................................................................................TA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATT....................................................................................................................................................................................................................................................................................	24	1	23.00	23	3	0	0	0	0	0	20
.....................................................................................ATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGA..............................................................................................................................................................................................................................................................................................	24	1	18.00	18	4	0	0	0	0	0	14
................................................................................................................TTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGA......................................................................................................................................................................................................................................................................................	23	1	16.00	16	2	0	0	0	1	0	13
...............................................................................................................................................TTCG-------------------------------CCGAGGATATGTCGATTCAAAAACGA...........................................................................................................................................................................................................................................................................	30	1	16.00	16	0	0	0	0	0	0	16
..................................................................................................................................................................................................TCAAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACC......	26	1	15.00	15	15	0	0	0	0	0	0
..........................................................................................GAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGA......................................................................................................................................................................................................................................................................................	27	1	11.00	11	0	0	0	0	0	0	11
...............................................................................................................TTTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGAT.....................................................................................................................................................................................................................................................................................	25	1	11.00	11	6	0	0	0	2	1	2
..................................................................................GATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGA..............................................................................................................................................................................................................................................................................................	27	1	11.00	11	2	0	0	0	1	0	8
........ACC------------------------------------------------------AATAAGAAAAGGACGGAGATATG...............................................................................................................................................................................................................................................................................................................................................................................................	26	1	10.00	10	6	0	0	0	2	0	2
.TAACTCCACC------------------------------------------------------AATAAGAAAAGGACGGA.....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	10.00	10	10	0	0	0	0	0	0
.................................................................................................................................................................................................TTCAAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACC......	27	1	9.00	9	9	0	0	0	0	0	0
...................................................................TAAGAAAAGGACGGAGATATGTCGAG------------------TTT.....................................................................................................................................................................................................................................................................................................................................................................	29	1	9.00	9	0	0	0	0	0	0	9
..................................................................ATAAGAAAAGGACGGAGATATGTCG............................................................................................................................................................................................................................................................................................................................................................................................	25	1	9.00	9	0	0	0	0	0	0	9
....................................................................AAGAAAAGGACGGAGATATGTCGAG------------------T.......................................................................................................................................................................................................................................................................................................................................................................	26	1	9.00	9	1	0	0	0	1	0	7
...............................................................................................................................................TTCG-------------------------------CCGAGGATATGTCGATTCAAAAAC.............................................................................................................................................................................................................................................................................	28	1	9.00	9	9	0	0	0	0	0	0
......CCACC------------------------------------------------------AATAAGAAAAGGACGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................	24	1	9.00	9	9	0	0	0	0	0	0
......CCACC------------------------------------------------------AATAAGAAAAGGACGGAGATA.................................................................................................................................................................................................................................................................................................................................................................................................	26	1	8.00	8	1	0	0	0	0	0	7
....................................................................................TATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAG................................................................................................................................................................................................................................................................................................	23	1	8.00	8	0	0	0	0	0	0	8
................................................................................................................TTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATT....................................................................................................................................................................................................................................................................................	25	1	8.00	8	2	0	0	0	0	0	6
.......................................................................................GTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATA............................................................................................................................................................................................................................................................................................	24	1	8.00	8	1	0	0	0	0	0	7
........................................................................................TCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATGT.........................................................................................................................................................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	8
.....TCCACC------------------------------------------------------AATAAGAAAAGGACGGAGATA.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	7.00	7	1	0	0	0	0	1	5
............................................................................................G------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATG..........................................................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	7
...................................................................TAAGAAAAGGACGGAGATATGTCGAG------------------........................................................................................................................................................................................................................................................................................................................................................................	26	1	7.00	7	5	0	0	0	0	0	2
...........................................................................................................................................................................................TGTCGATTCAAAAACGACATATTTCC------------------------------------------------..................................................................................................................................................................................................................	26	2	6.50	13	0	0	0	0	0	0	13
.......CACC------------------------------------------------------AATAAGAAAAGGACGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................	23	1	6.00	6	3	0	0	0	0	0	3
.................................................................................................................................................CG-------------------------------CCGAGGATATGTCGATTCAAAAACGA...........................................................................................................................................................................................................................................................................	28	1	6.00	6	2	0	0	0	0	0	4
......................................................................................TGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATG..........................................................................................................................................................................................................................................................................................	27	1	6.00	6	6	0	0	0	0	0	0
.........................................................................................CGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATG..........................................................................................................................................................................................................................................................................................	24	1	6.00	6	1	0	0	0	0	0	5
.................................................................................................................................................................................................TTCAAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACCTA....	29	1	6.00	6	6	0	0	0	0	0	0
....................................................................................TATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGAA.............................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	6
.TAACTCCACC------------------------------------------------------AATAAGAAAAGGACG.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	5	0	0	0	0	0	0
.TAACTCCACC------------------------------------------------------AATAAGAAAAGGACGG......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	5.00	5	5	0	0	0	0	0	0
........ACC------------------------------------------------------AATAAGAAAAGGACGGAGATATGT..............................................................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	5	0	0	0	0	0	0
................................................................................................................TTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATTC...................................................................................................................................................................................................................................................................................	26	1	5.00	5	1	0	0	0	4	0	0
...............................................................................................................................................TTCG-------------------------------CCGAGGATATGTCGATTCAAA................................................................................................................................................................................................................................................................................	25	1	5.00	5	5	0	0	0	0	0	0
.................................................................................................................TA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATTC...................................................................................................................................................................................................................................................................................	25	1	5.00	5	4	0	0	0	1	0	0
................................................................................................................TTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATTCAA.................................................................................................................................................................................................................................................................................	28	1	4.00	4	1	0	0	0	0	0	3
................................................................................................................TTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATTCA..................................................................................................................................................................................................................................................................................	27	1	4.00	4	2	0	0	0	1	0	1
......................................................................................TGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGA..............................................................................................................................................................................................................................................................................................	23	1	4.00	4	1	0	0	0	0	0	3
.......CACC------------------------------------------------------AATAAGAAAAGGACGGAGATATG...............................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	4	0	0	0	0	0	0
...................................................................TAAGAAAAGGACGGAGATATGTCGAG------------------TT......................................................................................................................................................................................................................................................................................................................................................................	28	1	4.00	4	3	0	0	0	1	0	0
..................................................................................GATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGG...............................................................................................................................................................................................................................................................................................	26	1	4.00	4	4	0	0	0	0	0	0
..................................................................................................................................................................................................TCAAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACCTA....	28	1	4.00	4	4	0	0	0	0	0	0
........ACC------------------------------------------------------AATAAGAAAAGGACGGAGATAT................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0	0
.........................................................................................CGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATGT.........................................................................................................................................................................................................................................................................................	25	1	3.00	3	1	0	0	0	0	0	2
.................................................................................................................TA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATTCA..................................................................................................................................................................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0	0
.............................................................................ACGGAGATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CC...................................................................................................................................................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0	0
...............................................................................................................TTTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGA......................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	3
.........................................................................AAGGACGGAGATATGTCGAG------------------TTTA---------------------------GT.......................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0	0
.................................................................................................................TA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATTCAA.................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	3
...............................................................................GGAGATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CC...................................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0	0
........................................................................AAAGGACGGAGATATGTCGAG------------------TTTA---------------------------G........................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0	0
......................................................................................TGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAG................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2
..................................................................................................................................................................................................TCAAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACCT.....	27	1	2.00	2	2	0	0	0	0	0	0
......................................................................................TGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATAT...........................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2
.........................................................................AAGGACGGAGATATGTCGAG------------------TTTA---------------------------GTT......................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0	0
........................................................................AAAGGACGGAGATATGTCGAG------------------TTTA---------------------------GT.......................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0	0
.....TCCACC------------------------------------------------------AATAAGAAAAGGACGGAG....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0
.........CC------------------------------------------------------AATAAGAAAAGGACGGAGATATG...............................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0
.......................................................................................GTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGG...............................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0
..........C------------------------------------------------------AATAAGAAAAGGACGGAGATATGTCGA...........................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0	0
.......CACC------------------------------------------------------AATAAGAAAAGGACGGAGATA.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0
................................................................................................................................................TCG-------------------------------CCGAGGATATGTCGATTCAAAAACG............................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0	0
....................................................................................TATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGC..............................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2
...............................................................................GGAGATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGA.................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0	0
....................................................................................TATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATAT...........................................................................................................................................................................................................................................................................................	28	1	2.00	2	1	0	0	0	1	0	0
......................................................................................TGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGG...............................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0
.......................................................................................GTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATG..........................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0	0
............................................................................GACGGAGATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CC...................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0	0
....................................................................................................................................................................................................AAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACCTA....	26	1	1.00	1	0	0	0	0	0	0	1
....................................................................................TATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATT............................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...................................................................................ATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATA............................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
...................................................................................ATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGA..............................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................TTCG-------------------------------CCGAGGATATGTCGAT.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................CG-------------------------------CCGAGGATATGTCGATTCAAAAAC.............................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................ACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACCTAT...	23	1	1.00	1	1	0	0	0	0	0	0
.....................................................................AGAAAAGGACGGAGATATGTCGAG------------------T.......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................GAGGATATGTCGATTCAAAAACGACA.........................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................TCG-------------------------------CCGAGGATATGTCGATTCAAAAA..............................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
......................................................................................TGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATGT.........................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................ATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGG...............................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.................................................................AATAAGAAAAGGACGGAGATATGTCG............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................TTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATTCAAA................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
................................................................................GAGATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGG...............................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................TCGATTCAAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------A.....................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...................................................................TAAGAAAAGGACGGAGATATGTCGAG------------------A.......................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.........CC------------------------------------------------------AATAAGAAAAGGACGGAGATAT................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...................................................................TAAGAAAAGGACGGAGAA..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................AACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACCTAT...	24	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................TA---------------------------GTTCG-------------------------------CCGAGGATATGTCGA......................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
................................................................................GAGATATGTCGAG------------------TT......................................................................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	1
..................................................................................................................A---------------------------GTTCG-------------------------------CCGAGGATATGTCGAT.....................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
........................................................................................TCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGA......................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1
.......................................................................................GTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATGTC........................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................TCG-------------------------------CCGAGGATATGTCGATTCAAAAACGA...........................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................TTCG-------------------------------CCGAGGATATGTCGATT....................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
....................................................................................TATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGT...............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1
.TAACTCCACC------------------------------------------------------AATAAGAAAAGGACGGAG....................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.....TCCACC------------------------------------------------------AATAAGAAAAGGACGGAGATAT................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................TTCAAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACCT.....	28	1	1.00	1	1	0	0	0	0	0	0
.................................................................................AGATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAG................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..............................................................................CGGAGATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------C....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
........ACC------------------------------------------------------AATAAGAAAAGGACGGAGATATGTC.............................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................TTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGAA.....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1
...ACTCCACC------------------------------------------------------AATAAGAAAAGGACGGA.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.....TCCACC------------------------------------------------------AATAAGAAAAGGACGG......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................AACGACATATTTCC------------------------------------------------G-----------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------AACCTATT--	25	1	1.00	1	1	0	0	0	0	0	0
ATAACTCCACC------------------------------------------------------AATAAGAAAAGGACG.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................GATTCAAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------A.....................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................CGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGA......................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.........................................................................AAGGACGGAGATATGTCGAG------------------TTTA---------------------------G........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................TCG-------------------------------CCGAGGATATGTCGATTCA..................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..........C------------------------------------------------------AATAAGAAAAGGACGGAGATATGTCG............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....TCCACC------------------------------------------------------AATAAGAAAAGGACG.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...................................................................TAAGAAAAGGACGGAGATATGTCGA...........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.TAACTCCACC------------------------------------------------------AATAAGAAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................TTCG-------------------------------CCGAGGATATGTCGATTCAAAAA..............................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................AG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGAT.....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.............................................................................ACGGAGATATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGA.................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
..AACTCCACC------------------------------------------------------AATAAGAAAAGGACG.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................TTA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATG....................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.........CC------------------------------------------------------AATAAGAAAAGGACGGAGATATGTC.............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1
................................................................................................................................................TCG-------------------------------CCGAGGATATGTCGATTCAAA................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...................................................................TAAGAAAAGGACGGAGATATGTC.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................TTTA---------------------------GTTCG-------------------------------CCGAGGATA............................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................TCG-------------------------------CCGAGGATATGTCGATTCAAAA...............................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................TTCG-------------------------------CCGAGGATATGTCGATTCAA.................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................TCG-------------------------------CCGAGGATATGTCGATTCAA.................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1
................................................................................................................................................TCG-------------------------------CCGAGGATATGTCGAT.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................TA---------------------------GTTCG-------------------------------CCGAGGATATGTCGATTCAAA................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
....................................................................................TATGTCGAG------------------TTTA---------------------------GTTCG-------------------------------CCGAGGT..............................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..........C------------------------------------------------------AATAAGAAAAGGACGGAGATATGT..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
........ACC------------------------------------------------------AATAAGAAAAGGACGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................GAGGATATGTCGATTCAAAAACGACAT........................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................TGTCGATTCAAAAACGACATATTTCC------------------------------------------------G-----------------------------------------------------------......................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1
.........................................................................................................................................................................................TATGTCGATTCAAAAACGACATATT.....................................................................................................................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0	0

dvi_2784

scaffold_12822:4014087-4014237 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

TATTGAGGGGCGCCTCTATACTGGAGGTAGTGCTAAAAAAGTTTTAGCTCCAGCCACGCTTTTAGCTTTGTAAAAGCTACTAAATAAAATTATAGAGCCCATTTATTATAGACTAAAATTTTACAATATGGAAAAACTTACGCATGCCTAGGGATGGTAGTTAACCGTAAGTTTGTTTAATTAGTAGCTACCCAACTTTTTACAACAACGGTTTTTTGGCTAAACAAGCATTTAAGTTGGGAAAAGTACTA *******************************************************.........(((((((((.....(((.......))).....)))))))))....................**************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060658 140_ovaries_total	V053 head	SRR060676 9xArg_ovaries_total	SRR060686 Argx9_0-2h_embryos_total	M047 female body	SRR060675 140x9_ovaries_total	SRR060665 9_females_carcasses_total	SRR060679 140x9_testes_total	SRR060684 140x9_0-2h_embryos_total	V047 embryo	SRR060655 9x160_testes_total	SRR060659 Argentina_testes_total	SRR060660 Argentina_ovaries_total	SRR060677 Argx9_ovaries_total	SRR060688 160_ovaries_total	GSM1528803 follicle cells	SRR060656 9x160_ovaries_total	SRR060678 9x140_testes_total	SRR060681 Argx9_testes_total
....................CTGGAGGTAGTGCTAAAAAAGTTTTAG............................................................................................................................................................................................................	27	0	4	0.50	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................TAGACTAAAATTTTACAATATGGAAA.....................................................................................................................	26	0	20	0.25	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................CGTTGTAATAGCTACTAAAT......................................................................................................................................................................	20	2	12	0.25	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CATGCCTAGGGATGGTAGTTAACC.....................................................................................	24	0	20	0.20	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................GTAAGTTTGTTTAATTAGTAGCT..............................................................	23	0	20	0.15	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................ACAAGCAGTTACCTTGGGAA........	20	3	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..TTGAGGGGCGCCTCTATACTGGCGC................................................................................................................................................................................................................................	25	2	10	0.10	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................CTAGGGATGGTAGTTAACCGTA..................................................................................	22	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
....................................................................................................................AATTTTACAATATGGAAA.....................................................................................................................	18	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.................................................................CCTTGTAATAGCTACTAAAT......................................................................................................................................................................	20	2	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CGCATGCCTAGGGATGGT.............................................................................................	18	0	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TACGCATGCCTAGGGATGGTAGTT.........................................................................................	24	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................ACACGCATTGATGTTGGGA.........	19	3	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................CCTTGTTATAGCTACTAAAT......................................................................................................................................................................	20	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TAGAGCCCATTTATTATAGACTAAAAT....................................................................................................................................	27	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCTACCCAACTTTTTACAACA............................................	21	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................CTAGGGATGGTAGTTAACCGTAAGTTT.............................................................................	27	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................CTAGGGATGGTAGTTAACCGTAAG................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................TAGCTTTGTAAAAGCTACTAA........................................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................TTATAGAGCCCATTTATTATAGACT.........................................................................................................................................	25	0	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GGTAGTGCTAAAAAAGTTTTAGCTCCA.......................................................................................................................................................................................................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................TTTGTTTAATTAGTAGCTACCCAACTT.....................................................	27	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CATGCCTAGGGATGGTAGTT.........................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................CCTTGTACTAGCTACTAAAT......................................................................................................................................................................	20	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................ATTATAGAGCCCATTTATTATAGACT.........................................................................................................................................	26	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
TATTGAGGGGCGCCTCTATACT.....................................................................................................................................................................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CCTAGGGATGGTAGTTAACC.....................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CATGCCTAGGGATGGTAGT..........................................................................................	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................CCGTAAGTTTGTTTAATTAGTAGCT..............................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................ATAGACTAAAATTTTACAATATGGAAA.....................................................................................................................	27	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ACGCATGCCTAGGGATGGTAGTTAAC......................................................................................	26	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TAACCGTAAGTTTGTTTAATTAGTAGCT..............................................................	28	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................AGGGATGGTAGTTAACCGT...................................................................................	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................TAGGCTAAAATTTTACAATATGGAAA.....................................................................................................................	26	1	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ATGGAAAAACTTACGCATGCCTAGGGAT................................................................................................	28	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TGCCTAGGGATGGTAGTTAAC......................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................GCTTTTAGCTTTGTAAAAGCTACTA.........................................................................................................................................................................	25	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CGCATGCCTAGGGATGGTAGTT.........................................................................................	22	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GTAGACTAAAATTTTACAATGTGGAAA.....................................................................................................................	27	2	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GTTGACTAAAATTTTACAATATGGAAA.....................................................................................................................	27	2	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GGGATGGTAGTTAACCGTAAGT...............................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................TATAGAGCCCATTTATTATAGACTA........................................................................................................................................	25	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TTACGCATGCCTAGGGATGGTAGT..........................................................................................	24	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

-10.5	-10.1	-10.1