dvi_2783

Name	Class	Family	Strand
DMR_DV	Unknown	Unknown	-

NNNNNNNNNNNNNNNNNNNCAGTTTATTACAGGATAAAACCTTAAAATACGGTAAAAACTGAGCATTCTTAGTCAAGATTGCTAACCCTAGTTTTTTTCCTTTAGGTTTTAAAACTGGTTTTAGCTGTTTTACCGTTCCCCAATGTAGTGCGAAAAAAAGTTTTATCTCCAGCCCCGCTTTTAGCTTTGAAAAAGGACCTCTATACTGCAAGGTTTTGCTGTCTTGAGGGGCGCCTCTATACTGCAAGGTT ***********************************************************************************************************..((............((.....(((((.((.((((((...((....))....))))))))..))))))).............))*******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060676 9xArg_ovaries_total	M047 female body	SRR060674 9x140_ovaries_total	V047 embryo	SRR060683 160_testes_total	SRR060684 140x9_0-2h_embryos_total	SRR060654 160x9_ovaries_total	SRR060675 140x9_ovaries_total	SRR060680 9xArg_testes_total	SRR060681 Argx9_testes_total	SRR060686 Argx9_0-2h_embryos_total	V116 male body
...................................................................................AACCCTAGTTTTTTTCCTTTAGGTTTT.............................................................................................................................................	27	0	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................GGACAATACCTTAGAATACG........................................................................................................................................................................................................	20	3	9	0.11	1	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................AATGTAGTGCGAAAAAAAGTTTTAT.....................................................................................	25	0	20	0.10	2	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................CGTTCCCCGGTGTAGTGCGAA.................................................................................................	21	2	20	0.10	2	0	0	0	0	2	0	0	0	0	0	0	0
.................................................................................................TCCTTTAGGTTTTAAAACTGGTTT..................................................................................................................................	24	0	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................CCTTTAGGTTTTAAAACTGGTTT..................................................................................................................................	23	0	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................TTTCATTTAGGTTTTAAAACTGGTTT..................................................................................................................................	26	1	14	0.07	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GCTTTGAAAAAGGACCTCTATACT............................................	24	0	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................TAGTTTTTTTCCTTTAGGTTT..............................................................................................................................................	21	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GAAAAAGGACCTCTATACT............................................	19	0	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0
...............................................TACGGTAAAAACTGAGCATTCGTA....................................................................................................................................................................................	24	1	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................GTAGTGCGAAAAAAAGTTTTATCT...................................................................................	24	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TTTTACCGTTCCCCAATGTAGTGC....................................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................CGCTTTGAAAAAGGACCTCTATACT............................................	25	1	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................CTATACTGCAAGGTTTTGCT...............................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................GAGCTTTGAAAAAGGACCTCTATACT............................................	26	1	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12822:4013420-4013670 +	dvi_2783	NNNNNNNNNNNNNNNNNNNGTCA----AATAATGTCCTATTTT-----GGAATTTTATG-------CC-ATTTTTGACTCGTAAGAATCAGTTCTAACGATTGGGATCAAAAAAAGGAAA--------------------------------------------------------------TCCAAAATTTT---GACCA-A--------AATC------------------------------------------------------------------------------GACAAAATGGCAAGGGGTTACATCACGCTTTTTTTCAAAATAGAG----GTCGGGGCGAAAATCGAAAC--TTTTTC-------------CTGGAGATATGACGTTCC-AAA-ACG------------ACAGAACTCCCCGCGGAGATATGACGTT-------------------------CC-AA
droWil2	scf2_1100000004945:709481-709682 +		-------------------GA-A----------------------------------TTTTGTATTCGAATTTTTAAGCAGT--------------------------------------------------CAGAATCAGTAGATAGATCGGTGGTA-ACGGAATCGGATTAAGGAAAAATTTCAAAATTTAAGGGATGAAAAATCGGGGTAAC------------------------------------------------------------------------------GACATATCTCCGC---------------------------------------CATTAGAAAAACGACATATCTCCGC-------------GCGGAGATAAGTCGTTCT-GAA-ACG------------ACATAATTTCGCGCGGAGATATGTCGTT-------------------------CC---
dp5	4_group4:1063110-1063170 +		-------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCGC-------------GCGGAGATATGTCGTCTC-AAA-ACG------------TCATAACTCCGCGCGGAGATATGTCGTT-------------------------T----
droPer2	scaffold_12:677311-677479 -		-------------------CAGA-----------------------------------A-----------------------------------------T-------------------------------------------GCAA-------------------------------------------------AACA-A--------TAGCGGAAAAATGGAAACAGATAAATTATTCGAAATTT-------CAAAACA---------AATAGGGCATTAGGTG----------------------------------------------------------------GAAGCGGCATATTTCCGT-------ACGGAAGCGGAGTTATGGCGTCTC-AAAACTGACATATGCATGTACATATCTCTGCGCGAACATATGACGGT-------------------------GT-GA
droKik1	scf7180000298648:295-465 +		-------------------AT------------G-----------------------TC-----------------------------------------------------------------------------------------------------------------------------------------GCTTA-C--------AAAC------------------------------------------------------------------------------GACATAACTCCGCGCAGAGATATGACGCTTTTTTTTTTGGCGGAGATATGT-CGCA-TGAAAACGACATAACTCCGC-------------TCGGAGATATGTCGCAGG-AAA-ACG------------ACATAACTCCGCTCGGAGATATGTCGCTTTTTTTCCGGCGGAGCTATGTCGTTTT-AA
droEle1	scf7180000491271:9655-9719 -		-------------------AA-A----------------------------------AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACC-------------ACGGAGATGTCCTTCTAC--AA-GCG------------ACATATCTCCGCGCAGAGATAAGACGTT-------------------------TG-AA
droRho1	scf7180000759646:448-566 -		-------------------AT------------G-----------------------TC-----------------------------------------------------------------------------------------------------------------------------------------GTCTA-A--------AAAC------------------------------------------------------------------------------GACATATCTCCGCGGGGAGATATGACGT---------------------------T-TAAAAACGACATATCTCCGC-------------TCGAAAATATTTCGTTTT--AA-ACG------------ACATATCTCCGCGCGGAGATATGTCGTT-------------------------TG-TA
droBia1	scf7180000301475:10336-10456 -		-------------------GG-CGCGGAGTTATG-----------------------TC-----------------------------------------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------GTTTTAAAAAGACATATCTCCGC---------------------------------------TGAACAAAAAGCGACATATTTCCGC-------------GCGGAGATATGACGTTTC-AAG-ACG------------ACATATCTCCGCGCGGAGTTATGTCGCT-------------------------AT-GA
droTak1	scf7180000410739:10273-10482 -		-------------------GCGA----ACTTATGTCCTTTTTTCTGGCGAAATTATATC--------------------------------------------------------------------------------------------GCTGCTAAACGTCATAGGATCGC------------------------------------------------------------------CCGAAATTGTGTCGTTTAAAATTACTTGTGGCGAACTTATGACGTTTTAATGTGACACAAGTCCGC---------------------------------------CGCA-GAAAAACGACATAATTTCGC--------CAGCCGCGGAATTATGTCGCTGC-TAA-ACG------------ACATAAGTTCGCGCGAAATTATGACGTT-------------------------TA-AA
droYak3	v2_chrUn_002:223827-224000 +		-------------------AG-C----------------------------------GT-----------------------------------------TTCCGACCATAAAAAGTATATATATTCTTAATCAGAATCAATAGCCAAGTC-------------------------------------------------------------------------------------------------------------------------GATCTGGCCATGTCTTGAATCGACATATCTTCGG---------------------------------------CGAATTAAGGGCGACACATCTTCGTTCTTTTCTTATTGGCGGAGTTATGTCGCTTTCAAA-ACG------------ATACATCTCCGT--TAAACTA-----------------------------------AT
droEre2	scaffold_4929:23995291-23995376 -		-------------------TCGGGCGGAATCATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGC---------------------------T-TTT------------TTTTG-------------ACGGAGCTTTTTAGTTTTGTAA-ATG------------TCATATCTCCAAGCGGAGTTATAACGTT-------------------------TTCTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

NNNNNNNNNNNNNNNNNNNGTCA----AATAATGTCCTATTTT-----GGAATTTTATG-------CC-ATTTTTGACTCGTAAGAATCAGTTCTAACGATTGGGATCAAAAAAAGGAAA--------------------------------------------------------------TCCAAAATTTT---GACCA-A--------AATC------------------------------------------------------------------------------GACAAAATGGCAAGGGGTTACATCACGCTTTTTTTCAAAATAGAG----GTCGGGGCGAAAATCGAAAC--TTTTTC-------------CTGGAGATATGACGTTCC-AAA-ACG------------ACAGAACTCCCCGCGGAGATATGACGTT-------------------------CC-AA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................TATG-------CC-ATTTTTGACTCGTAAGAATC......................................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.17	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................C------------------------------------------------------------------------------GACAAAATGGCAAGGGGT........................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATGACGTTCC-AAA-ACG------------AC........................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................TGACTCGTAAGAATCAGTTCTAACGATT.........................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTT---GACCA-A--------AATC------------------------------------------------------------------------------GACAAAATGGCAA.............................................................................................................................................................................	26	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................G------------ACAGAACTCCCCGCGGAGATAT....................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AAATGGCAAGGGGTTACATC..................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TC------------------------------------------------------------------------------GACAAAATGGCAAGGGGTTACAT...................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CAAAATGGCAAGGGGTTACA....................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GCTTTTTTTCAAAATAGA..............................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGCGGAGATATGACGTT-------------------------CC-A.	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TTTTTTTCAAAATAGAG----GT.......................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCGCGGAGATATGACGTT-------------------------.....	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCAAAAAAAGGAAA--------------------------------------------------------------TCCAAAATTT...............................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TCGTAAGAATCAGTTCTAACGATA.........................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................AGGGGTTACATCACGCTT............................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAAAGGAAA--------------------------------------------------------------TCCAAAATTTT---G..........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AATC------------------------------------------------------------------------------GACAAAATGGCAAGGGG.........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GCTTTTTTTCAAAATAGC..............................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................TTTTTTTCAAAATAGAG----GTCG.....................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AAATGGCAAGGGGTTACATCACGCTT............................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TACATCACGCTTTTTTTCAAAATAGAG----G........................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TC------------------------------------------------------------------------------GACAAAATGGCAAGGGGTTACATC..................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCGCGGAGATATGACGTT-------------------------CC-..	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TC------------------------------------------------------------------------------GACAAAATGGCAAGGGGTT.......................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AAAATGGCAAGGGGTTACATCAC................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AAAATGGCAAGGGGTTACATC..................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AATTTT---GACCA-A--------AATC------------------------------------------------------------------------------GAC.......................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droWil2

-------------------GA-A----------------------------------TTTTGTATTCGAATTTTTAAGCAGT--------------------------------------------------CAGAATCAGTAGATAGATCGGTGGTA-ACGGAATCGGATTAAGGAAAAATTTCAAAATTTAAGGGATGAAAAATCGGGGTAAC------------------------------------------------------------------------------GACATATCTCCGC---------------------------------------CATTAGAAAAACGACATATCTCCGC-------------GCGGAGATAAGTCGTTCT-GAA-ACG------------ACATAATTTCGCGCGGAGATATGTCGTT-------------------------CC---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTCGCGCGGAGATATGTCG................................	23	20	0.40	8	0	1	0	5	2
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGCGCGGAGATATGTCGT...............................	22	20	0.30	6	6	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCGCGCGGAGATATGTCG................................	22	20	0.15	3	0	1	1	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................T-GAA-ACG------------ACATAATTTCGCGCGGAGA.......................................	26	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATATGTCGTT-------------------------CC---	18	12	0.08	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGCGGAGATATGTCGTT-------------------------.....	20	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCGCGGAGATATGTCGTT-------------------------C....	23	20	0.05	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTCGCGCGGAGATATG...................................	21	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................AACGACATATCTCCGC-------------GCGGAGT.........................................................................................	23	20	0.05	1	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGC-------------GCGGA...........................................................................................	22	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GAA-ACG------------ACATAATTTCGCGCGGAGA.......................................	25	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCGCGGAGATATGTCGG...............................	21	20	0.05	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACG------------ACATAATTTCGCGCGGAGATATGT..................................	27	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCGCGGAGATATGTCGTT-------------------------.....	22	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGC-------------GC..............................................................................................	19	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGCGCGGAGATATGTCG................................	21	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TAGAAAAACGACATATCTCCGC-------------GCGG............................................................................................	26	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................T-GAA-ACG------------ACATAATTTCGCGCG...........................................	22	20	0.05	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AA-ACG------------ACATAATTTCGCGCGG..........................................	21	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCGCGGAGATATGTCGT...............................	21	20	0.05	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................G------------ACATAATTTCGCGCGGAGATATGT..................................	25	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................T-GAA-ACG------------ACATAATTTCGCG.............................................	20	20	0.05	1	0	1	0	0	0

dp5

-------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCGC-------------GCGGAGATATGTCGTCTC-AAA-ACG------------TCATAACTCCGCGCGGAGATATGTCGTT-------------------------T----	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................AA-ACG------------TCATAACTCCGCGCGG..........................................	21	2	97.00	194	0	136	0	0	0	0	0	58	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................AAA-ACG------------TCATAACTCCGCGCG...........................................	21	2	25.50	51	0	37	0	0	0	0	1	13	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................A-ACG------------TCATAACTCCGCGCGGA.........................................	21	2	18.50	37	0	18	0	0	0	0	0	19	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGCGCGGAGATATGTCG................................	21	2	16.50	33	0	15	0	0	0	0	0	18	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCCGCGCGGAGATATG...................................	20	2	11.00	22	0	21	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................A-ACG------------TCATAACTCCGCGCGG..........................................	20	2	10.50	21	0	17	0	0	0	0	0	4	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACG------------TCATAACTCCGCGCGGA.........................................	20	2	5.50	11	0	11	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................AAA-ACG------------TCATAACTCCGCGCC...........................................	21	2	5.50	11	0	4	0	0	0	0	0	7	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATATGTCGTCTC-AAA-ACG------------TCA.......................................................	21	2	5.50	11	0	5	0	0	0	0	0	6	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................AGATATGTCGTCTC-AAA-ACG------------TC........................................................	22	2	4.50	9	0	6	0	0	0	0	1	2	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................C-AAA-ACG------------TCATAACTCCGCGC............................................	21	2	4.00	8	0	2	0	0	0	0	0	5	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACG------------TCATAACTCCGCGCGGAG........................................	21	2	4.00	8	0	4	0	0	0	0	0	4	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AA-ACG------------TCATAACTCCGCGCGGT.........................................	22	2	3.50	7	0	4	0	0	0	0	0	3	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCCGCGCGGAGATATGT..................................	21	2	3.50	7	0	3	0	0	0	0	0	4	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................A-ACG------------TCATAACTCCGCGCGGTT........................................	22	2	3.50	7	0	5	0	0	0	0	0	2	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AA-ACG------------TCATAACTCCGCGCGC..........................................	21	2	3.50	7	0	4	0	0	0	0	0	3	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATATGTCGTCTC-AAA-ACG------------TCAT......................................................	22	2	3.50	7	0	3	0	0	0	0	0	4	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AA-ACG------------TCATAACTCCGCGCG...........................................	20	2	3.00	6	0	6	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AA-ACG------------TCATAACTCCGCGCGT..........................................	21	2	3.00	6	0	6	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................AGATATGTCGTCTC-AAA-ACG------------T.........................................................	21	2	3.00	6	0	5	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCCGCGCGGAGATATGTC.................................	22	2	2.50	5	0	4	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................AAA-ACG------------TCATAACTCCGCGCT...........................................	21	2	2.50	5	0	3	0	0	0	0	0	2	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CG------------TCATAACTCCGCGCGGAG........................................	20	2	2.50	5	0	5	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGCGCGGAGATATGTCGT...............................	22	2	2.50	5	0	5	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................A-ACG------------TCATAACTCCGCGCGGT.........................................	21	2	2.00	4	0	3	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACG------------TCATAACTCCGCGCGG..........................................	19	2	2.00	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................GATATGTCGTCTC-AAA-ACG------------TC........................................................	21	2	2.00	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CG------------TCATAACTCCGCGCGGAGA.......................................	21	2	2.00	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGTCGTT-------------------------T----	21	14	2.00	28	0	26	0	0	0	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGCGCGGAGATATGTC.................................	20	2	1.50	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CG------------TCATAACTCCGCGCGGA.........................................	19	2	1.50	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATATGTCGTCTC-AAA-ACG------------T.........................................................	19	2	1.00	2	0	0	0	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TCCGC-------------GCGGAGATATGTCGTC................................................................................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................A-ACG------------TCATAACTCCGCGCGGTTT.......................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................AGATATGTCGTCTC-AAA-ACG------------TT........................................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................C-AAA-ACG------------TCATAACTCCGCGCG...........................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................AAA-ACG------------TCATAACTCCGCGC............................................	20	2	1.00	2	0	1	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACG------------TCATAACTCCGCGCG...........................................	18	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCGCGCGGAGATATG...................................	19	2	1.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................A-ACG------------TCATAACTCCGCGCG...........................................	19	2	1.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCCGCGCGGAGATATGTCGTT-------------------------.....	25	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AA-ACG------------TCATAACTCCGCGCC...........................................	20	2	1.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................G------------TCATAACTCCGCGCGGAG........................................	19	2	1.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................A-ACG------------TCATAACTCCGCGCGGTA........................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGATATGTCGTT-------------------------.....	21	14	1.00	14	0	12	0	0	0	0	1	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTCTC-AAA-ACG------------TCATAACT..................................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCGCGCGGAGATATGTC.................................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................C-------------GCGGAGATATGTCGTCTC-AAA-ACG------------..........................................................	25	2	1.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................A-ACG------------TCATAACTCCGCGCGT..........................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGCGCGGAGATATGTCGTT-------------------------.....	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CG------------TCATAACTCCGCGCGG..........................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCGC-------------GCGGAGATATGTCGTCT...............................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................GATATGTCGTCTC-AAA-ACG------------T.........................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................G------------TCATAACTCCGCGCGGAGA.......................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................C-------------GCGGAGATATGTCGTCTC-AAA-ACG------------TC........................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATATGTCGTCTC-AAA-ACG------------..........................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TCGTCTC-AAA-ACG------------TCATAACTCCGCGC............................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCCGCGCGGAGATATGTCGTT-------------------------T----	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TC-AAA-ACG------------TCATAACTCCGCGCGG..........................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATATGTCGTCTC-AAA-ACG------------TC........................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................CGC-------------GCGGAGATATGTCGTCTC-AAA-AC.......................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TCCGC-------------GCGGAGATATGTCGTCT...............................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................AAA-ACG------------TCATAACTCCGCGCGT..........................................	22	2	0.50	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................A-ACG------------TCATAACTCCGCGCGGTC........................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCCGCGCGGAGATATGC..................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TCCGC-------------GCGGAGATATGTCGTCTC-AA...........................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCCGCGCGGAGATATGTT.................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................C-------------GCGGAGATATGTCGTCTC-AAA-ACG------------TCA.......................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACG------------TCATAACTCCGCGCGGT.........................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CTCCGC-------------GCGGAGATATGTCGT.................................................................................	21	16	0.50	8	0	7	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................A-ACG------------TCATAACTCCGCGCGGAC........................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTCTC-AAA-ACG------------TCATA.....................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTCCGCGCGGAGATATG...................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAACTCCGCGCGGAGATAT....................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................A-ACG------------TCATAACTCCGCGCGGAG........................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACG------------TCATAACTCCGCGCGGAGA.......................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGCGCGGAGATATGTCGT...............................	21	16	0.50	8	0	7	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TCCGC-------------GCGGAGATATGTCGTCTC-AAA-AC.......................................................................	28	2	0.50	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCCGCGCGGAGATATGTCT................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGCGCGGAGATATGTCG................................	20	16	0.31	5	0	5	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CTCCGC-------------GCGGAGATATGTCG..................................................................................	20	16	0.31	5	0	5	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGCGCGGAGATATGTCGTT-------------------------.....	22	14	0.29	4	0	3	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGATATGTCGTT-------------------------T----	22	14	0.14	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGTCGTT-------------------------.....	20	14	0.14	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCCGCGCGGAGATATGA..................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGCGGAGATATGTCGTT-------------------------T----	20	18	0.11	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGGAGATATGTCGTT-------------------------T----	19	19	0.11	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGCGCGGAGATATGTCGTA-------------------------.....	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CCGC-------------GCGGAGATATGTCGT.................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGTCG................................	18	16	0.06	1	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CCGC-------------GCGGAGATATGTCG..................................................................................	18	16	0.06	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGTCGT...............................	19	16	0.06	1	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................CTCCGC-------------GCGGAGATATGTCGTA................................................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGAGATATGTCGTT-------------------------T----	18	19	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

-------------------CAGA-----------------------------------A-----------------------------------------T-------------------------------------------GCAA-------------------------------------------------AACA-A--------TAGCGGAAAAATGGAAACAGATAAATTATTCGAAATTT-------CAAAACA---------AATAGGGCATTAGGTG----------------------------------------------------------------GAAGCGGCATATTTCCGT-------ACGGAAGCGGAGTTATGGCGTCTC-AAAACTGACATATGCATGTACATATCTCTGCGCGAACATATGACGGT-------------------------GT-GA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droKik1

-------------------AT------------G-----------------------TC-----------------------------------------------------------------------------------------------------------------------------------------GCTTA-C--------AAAC------------------------------------------------------------------------------GACATAACTCCGCGCAGAGATATGACGCTTTTTTTTTTGGCGGAGATATGT-CGCA-TGAAAACGACATAACTCCGC-------------TCGGAGATATGTCGCAGG-AAA-ACG------------ACATAACTCCGCTCGGAGATATGTCGCTTTTTTTCCGGCGGAGCTATGTCGTTTT-AA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-------------------AA-A----------------------------------AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACC-------------ACGGAGATGTCCTTCTAC--AA-GCG------------ACATATCTCCGCGCAGAGATAAGACGTT-------------------------TG-AA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-------------------AT------------G-----------------------TC-----------------------------------------------------------------------------------------------------------------------------------------GTCTA-A--------AAAC------------------------------------------------------------------------------GACATATCTCCGCGGGGAGATATGACGT---------------------------T-TAAAAACGACATATCTCCGC-------------TCGAAAATATTTCGTTTT--AA-ACG------------ACATATCTCCGCGCGGAGATATGTCGTT-------------------------TG-TA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-------------------GG-CGCGGAGTTATG-----------------------TC-----------------------------------------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------GTTTTAAAAAGACATATCTCCGC---------------------------------------TGAACAAAAAGCGACATATTTCCGC-------------GCGGAGATATGACGTTTC-AAG-ACG------------ACATATCTCCGCGCGGAGTTATGTCGCT-------------------------AT-GA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-------------------GCGA----ACTTATGTCCTTTTTTCTGGCGAAATTATATC--------------------------------------------------------------------------------------------GCTGCTAAACGTCATAGGATCGC------------------------------------------------------------------CCGAAATTGTGTCGTTTAAAATTACTTGTGGCGAACTTATGACGTTTTAATGTGACACAAGTCCGC---------------------------------------CGCA-GAAAAACGACATAATTTCGC--------CAGCCGCGGAATTATGTCGCTGC-TAA-ACG------------ACATAAGTTCGCGCGAAATTATGACGTT-------------------------TA-AA	Size	Hit Count	Total Norm	Total
No Reads

droYak3

-------------------AG-C----------------------------------GT-----------------------------------------TTCCGACCATAAAAAGTATATATATTCTTAATCAGAATCAATAGCCAAGTC-------------------------------------------------------------------------------------------------------------------------GATCTGGCCATGTCTTGAATCGACATATCTTCGG---------------------------------------CGAATTAAGGGCGACACATCTTCGTTCTTTTCTTATTGGCGGAGTTATGTCGCTTTCAAA-ACG------------ATACATCTCCGT--TAAACTA-----------------------------------AT

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

-------------------TCGGGCGGAATCATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGC---------------------------T-TTT------------TTTTG-------------ACGGAGCTTTTTAGTTTTGTAA-ATG------------TCATATCTCCAAGCGGAGTTATAACGTT-------------------------TTCTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_2783

scaffold_12822:4013470-4013620 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads