dvi_2780

Name	Class	Family	Strand
DMR_DV	Unknown	Unknown	-

Species	Coordinate	ID	Alignment
droVir3	scaffold_12822:4011422-4011672 +	dvi_2780	CATAACTCCGCGGGGAGATTTGACGTTC-CGAAACGACATAGCTCCCCGAGGTCGGTGCGAAAATCGAAACATGTTCGATGATTTTTTTTAATATTTCGGGT-------A-----------ATAGCTTCGCGCGGAGATATGACGCTCCA-------------------------GAACAA------------CATAACTC------------------------------------------------------------------------------TGCGCGGAGATATGGCGTTCC-------------------------------------------AAAACGACATAACTCCGCGCGGAGATATGACGTTT-CAAAACGACATAACTCCCCGCGGAGATATGACCTTCAT---------------------------------------------------CACGATTTTTTT
droWil2	scf2_1100000004943:10990295-10990503 +		CATATCTCAGC------------CGTTAGAAAAACGACTTATCTCCGCG---------CGAAATTA-------------------------TTA-TTGGGGTTTATTATTATATCATCGCCGGTGATCTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-AA-AACGTAATA----TCTCCGCCGTTAAAAAAAGTCGTTTTAAAACGACTTATCTCCGCGCGAAATTATGTCGTTT-CAGAACGACATATCTCCGCGCGGAGATATGTCGTT------------------------------------------------------------------
dp5	Unknown_singleton_3316:2576-2752 +		CATATCTCCGCTCGGAGATATGACGTTT-TGAAACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGTGTTACAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGGAGATATGACGTTTT-GA-AACGACATA----TCTCCGCCGTGTCA------------CAAACGACATATCTCCGCGCGGAGCTATGACGCTT-AGAAGCGACATATCTCCGCGCAGCGAT--------------------------------------------------------------------------
droPer2	scaffold_11:782785-782976 +		CATATCTCCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGATCCACAAACGA------------CATATCTC------------------------------------------------------------------------------TGATCGAAATTATGTCGTTTT-------------------------------------------AAAGCGACATACCTCCGCGCGGAGATATGTCGTCT-CAAAACGTCATAACTCCGCGCGGAGATATGTCGTTTGTGACATGGCGGAGATATGTCGTTTCGAAACGACTTAAGTCCGCCAGAAAAT-----A-------
droKik1	scf7180000302704:11133-11323 +		TAT--CTCCGCGCGGAGTTATGTCGCTT-TAAAACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CAAACTAGAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGGAGTTATGTCGCTCT-AA-AGCGACATA----TCTCCGCCGAACTA------------GAAACGACATATCTCCGCGCGGAGCTATGTCGTTT-TAAAGTGACATAACTCCGCGCGGAGGTATGTCGTTGCT---------------------------------------------------TACGA-------
droEle1	scf7180000489519:6939-7099 -		CATAAGTCCGC------------CGTAGAAAAAACGACATAATTTCGG-----------------------------------------------------------------------------------------------------------------------TAGCCGCAGAATAAACTGCTAAGCGACATAAGTT------------------------------------------------------------------------------CGCGCGAAATTATGTCGTTTT-AA------------------------------------------AAC----TATTTGTGC-CGGACTTATGTCGTTT-TAAAGTGACCTAATTTCGCGGGGAAAAACGACATAATT---------------------------------------------------TC----------
droRho1	scf7180000759646:449-629 -		TTTATTTG---GGGGAATTCTGTCGCTT-AAAAGCGACACAGCTCCCC------------------------------------------------------------------------CATTGACTAACGCGGAGTTATGTCGTCTAA-------------------------AAACGA------------CATATCTC------------------------------------------------------------------------------CGCGGGGAGATATGACGTTTA-------------------------------------------AAAACGACATATCTCCGCTCGAAAATATTTCGTTT-TA-AACGACATATCTCCGCGCGGAGATATGTCGTTTGT---------------------------------------------------------------
droBia1	scf7180000299101:14041-14250 +		TATATCTCCGC----------------------ACGACATATCTCCGCT----CGGTACAAT----------------------------------------------------------------------------------------------------------------------------------------TTTCGAGCG----GAATTATGTCGTTTTTTTTGGCGGAGCTATATCGTTTTTAAAACGTCAT--------------ATCTCCGCGCGGAGTTATGTCGCTTTTAA-AACGACATATGTATCTCCGCTGACCAA------------AAAGCGACATATTTCCGCGCGGAGATATGACGTTT-CAAGACGACATATCTCCGCGCGGAG----------------------------------------------------------------------------
droTak1	scf7180000410441:113-319 -		TTTATTTA---GCGGAGATTTGACGTTT-AAAAACGACATATCTCCCC------------------------------------------------------------------------CGTTAATCAACGCGGAGATATGACGTTTAAAAACGACATATCTTCGCCCATTTAAGAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGGAGATGTGACGTTTA-------------------------------------------AAAACGAAATATTTTCGCGCGGAGATATGTCGTTT-TTAAACGTCATATCTCCGCGCGGAGATAAGTCGTTTGT---------------------------------------------------------------
droYak3	2L:20314096-20314258 +		TAA--TTTCG-GATGAGATATGTCGCTT-TGAA-----------------------------------------------------------------------------------------------------------------------------------------------AACGA------------CATATCTC-----------------------------------------------------------CTCCGAACTCAAAAAACTTCGGGAGGAGATATGTCGTTTT-GAAAACGACACA----ACTCATCCA-----------------------GCTTATTATCG-GCGGAGATGTGTCGTTTTTGGAGATACAT---------------------------------------------CATCTTAAAAA----------CGAC-----ACAGC----------
droEre2	scaffold_4690:18024916-18025102 -		-------------GGAAATATGTCGTTTTTGAATCGACATATCCTCGG-----------------------------------------------------------------------------------------------------------------------CGAACTAAACTCGA------------CATATCTCCGTCCTTTTC-----------------------------------------------------------------TTATTGGTGGAGTTATGTCGCTTTAAA-AACGATATA----TTTCCGTCAAACTA------------AAAACGACATATCTCCGCGCGGAACTTTGTTGTTT-TACAACGACATTATTCCGCGCAGAGATATGACGTT------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CATAACTCCGCGGGGAGATTTGACGTTC-CGAAACGACATAGCTCCCCGAGGTCGGTGCGAAAATCGAAACATGTTCGATGATTTTTTTTAATATTTCGGGT-------A-----------ATAGCTTCGCGCGGAGATATGACGCTCCA-------------------------GAACAA------------CATAACTC------------------------------------------------------------------------------TGCGCGGAGATATGGCGTTCC-------------------------------------------AAAACGACATAACTCCGCGCGGAGATATGACGTTT-CAAAACGACATAACTCCCCGCGGAGATATGACCTTCAT---------------------------------------------------CACGATTTTTTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................CGCTCCA-------------------------GAACAA------------CATAACTC------------------------------------------------------------------------------TGCGC....................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................C-CGAAACGACATAGCTCCCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACATAACTCCCCGCGGAGA...........................................................................	21	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CAA------------CATAACTC------------------------------------------------------------------------------TGCGCGGAGA...............................................................................................................................................................................................	21	14	0.29	4	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................ACATAACTCCGCGCGGAGATAT.............................................................................................................	22	20	0.25	5	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CAA------------CATAACTC------------------------------------------------------------------------------TGCGCGGAGAT..............................................................................................................................................................................................	22	13	0.23	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AACAA------------CATAACTC------------------------------------------------------------------------------TGCGCGGA.................................................................................................................................................................................................	21	14	0.21	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AACAA------------CATAACTC------------------------------------------------------------------------------TGCGCGGAG................................................................................................................................................................................................	22	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TT-CAAAACGACATAACTCCCC..................................................................................	21	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ACGACATAACTCCGCGCGGAGAT...............................................................................................................	23	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GCTTCGCGCGGAGATATGACG...............................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CATAACTC------------------------------------------------------------------------------TGCGCGGAGATAT............................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GGAGATATGACGTTT-CAAAACG..............................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACATAACTCCCCGCGGAGATAT........................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TGATTTTTTTTAATATTTCGG............................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CGCGCGGAGATATGAC..........................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GTTCC-------------------------------------------AAAACGACATAACTCCGCGCGG...................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................GT-------A-----------ATAGCTTCGCGCGGAGAT.....................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CGATGATTTTTTTTAATATTT...............................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TT-CAAAACGACATAACTCCC...................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................ACGTTT-CAAAACGACATAACTCCCCG.................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTT-CAAAACGACATAACTCCC...................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGACGT........................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCGGAGATATGGCGTTCC-------------------------------------------AAA......................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AGCTTCGCGCGGAGATATGACG...............................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................ACGACATAACTCCCCGCGGAGA...........................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................GAGATATGACGTTT-CAAAACG..............................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................CGAGGTCGGTGCGAAAATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TAACTCCCCGCGGAGATATG.......................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGACGTT.......................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AAAACGACATAACTCCCCGCGG..............................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AA------------CATAACTC------------------------------------------------------------------------------TGCGCGGAGA...............................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................A------------CATAACTC------------------------------------------------------------------------------TGCGCGGAGATA.............................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TGACGTTC-CGAAACGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACATAACTCCCCGCGGAGATA.........................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droWil2

CATATCTCAGC------------CGTTAGAAAAACGACTTATCTCCGCG---------CGAAATTA-------------------------TTA-TTGGGGTTTATTATTATATCATCGCCGGTGATCTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-AA-AACGTAATA----TCTCCGCCGTTAAAAAAAGTCGTTTTAAAACGACTTATCTCCGCGCGAAATTATGTCGTTT-CAGAACGACATATCTCCGCGCGGAGATATGTCGTT------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................TGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-AA-AACG............................................................................................................................................................................	27	20	0.75	15	0	10	0	4	1
..............................................................................................................................TCTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-AA-AA..............................................................................................................................................................................	27	19	0.32	6	1	5	0	0	0
.......................................TATCTCCGCG---------CGAAATTA-------------------------TTA-TTGGG............................................................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0
................................................................................................................................TGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-A..................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0
..........................................................................................................TATTATATCATCGCCGGTGATCTGC.............................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	1	0	0	0	0
...............................................................................................................TATCATCGCCGGTGATCTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGA...............................................................................................................................................................................................	27	19	0.05	1	1	0	0	0	0
...............................................................................................................................CTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-AA-AAC.............................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0
...............................................................................................................................CTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-A..................................................................................................................................................................................	23	19	0.05	1	0	1	0	0	0
..............................................................................................................................TCTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-A..................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
..............................................................................................................................TCTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-AA-A...............................................................................................................................................................................	26	19	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................AACGACATATCTCCGCGCGGAGT...........................................................................	23	20	0.05	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................GAACGACATATCTCCGCGCG...............................................................................	20	20	0.05	1	0	0	0	0	1
................................................................................................................................TGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-AA-AAC.............................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
................................................................................................................................TGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-AA-AA..............................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.................................................................................................................................GCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTTTC-AA-AACG............................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
............................................................................................................................GATCTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGT..........................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.............................................................................................................................ATCTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGTT......................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................CGCGCGAAATTATGTCGTTT-CAGAACG..............................................................................................	27	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GCGCGAAATTATGTCGTTT-CAGAACGAC............................................................................................	28	20	0.05	1	0	1	0	0	0
............................................................................................................................GATCTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGATATGTCGT.......................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0

dp5

CATATCTCCGCTCGGAGATATGACGTTT-TGAAACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGTGTTACAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGGAGATATGACGTTTT-GA-AACGACATA----TCTCCGCCGTGTCA------------CAAACGACATATCTCCGCGCGGAGCTATGACGCTT-AGAAGCGACATATCTCCGCGCAGCGAT--------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................CAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCG...................................................................................................................................................................................................	21	18	7.89	142	0	124	0	0	0	0	4	13	1	0
.......................................................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGCGCG....................................................................................................................	21	18	7.89	142	0	124	0	0	0	0	4	13	1	0
..........................................................................................................................................................................................................................................................................................................................................A------------CAAACGACATATCTCCGCGC.....................................................................................................................	21	19	2.68	51	0	35	0	0	0	0	0	16	0	0
.............................................................................................................................................................................ACAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGC....................................................................................................................................................................................................	21	19	2.68	51	0	35	0	0	0	0	0	16	0	0
.........................................................................................................................................................................................................................................................................................................................................CA------------CAAACGACATATCTCCGCG......................................................................................................................	21	13	2.00	26	0	21	0	0	0	0	1	4	0	0
..................................................................................................................................................................................................................................................................................................................................................................TCTCCGCGCGGAGCTATGACG.........................................................................................................	21	7	0.86	6	0	6	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCG...................................................................................................................................................................................................	22	18	0.83	15	0	13	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................A------------CAAACGACATATCTCCGCGCG....................................................................................................................	22	18	0.83	15	0	13	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................A------------CAAACGACATATCTCCGCG......................................................................................................................	20	19	0.74	14	0	9	0	0	0	0	0	5	0	0
.............................................................................................................................................................................ACAAACGA------------CATATCTC------------------------------------------------------------------------------CGCG.....................................................................................................................................................................................................	20	19	0.74	14	0	9	0	0	0	0	0	5	0	0
..............................................................................................................................................................................CAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGC....................................................................................................................................................................................................	20	19	0.63	12	0	11	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGCGC.....................................................................................................................	20	19	0.63	12	0	11	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTC------------------------------------------------------------------------------CGCGCGGAGATATGACGT.......................................................................................................................................................................................	21	4	0.50	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCG...................................................................................................................................................................................................	20	18	0.50	9	0	9	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGCGCG....................................................................................................................	20	18	0.50	9	0	9	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CA------------CAAACGACATATCTCCGC.......................................................................................................................	20	13	0.38	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GTCA------------CAAACGACATATCTCCGCGCGG...................................................................................................................	26	7	0.29	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TCTCCGCGCGGAGCTATGAC..........................................................................................................	20	7	0.29	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGCG......................................................................................................................	19	19	0.26	5	0	5	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CAAACGA------------CATATCTC------------------------------------------------------------------------------CGCG.....................................................................................................................................................................................................	19	19	0.26	5	0	5	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................CGCTT-AGAAGCGACATATCTCCG...................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCGGAGATATGACGTTTT-GA-AACGACA.........................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TT-AGAAGCGACATATCTCCGC..................................................................................	21	4	0.25	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TCA------------CAAACGACATATCTCCGCGC.....................................................................................................................	23	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GACGCTT-AGAAGCGACATATCTCCGCGC................................................................................	28	4	0.25	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TGACGCTT-AGAAGCGACATATCTCCGC..................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGCTATGACGCTT-AGAAGC...............................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TC------------------------------------------------------------------------------CGCGCGGAGATATGACGTT......................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TT-AGAAGCGACATATCTCCGCGC................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGT..................................................................................................................................................................................................	22	18	0.22	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGCGCGT...................................................................................................................	22	18	0.22	4	0	4	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGGA.................................................................................................................................................................................................	22	14	0.21	3	0	2	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGCGCGGA..................................................................................................................	22	14	0.21	3	0	2	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TATCTCCGCGCGGAGCTATGACGCTT-.....................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TATCTCCGCGCGGAGCTATGACGCTT-A....................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TCTCCGCGCGGAGCTATGACGC........................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGCTATGACGCTT-.....................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGCTATGACGCTT-AGA..................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TACAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGG..................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTC------------------------------------------------------------------------------CGCGCGGAGATATGACG........................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TGTTACAAACGA------------CATATCTC------------------------------------------------------------------------------.........................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGCTATGACGC........................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TTACAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGG..................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..........CTCGGAGATATGACGTTT-TGAAACGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......TCCGCTCGGAGATATGACGTTT-T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
....TCTCCGCTCGGAGATATGACGTTT-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TACAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCG...................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...........TCGGAGATATGACGTTT-TGAAACGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	1	0	0
.......................................TATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGTGTTACAAACGA------------C..............................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TACAAACGA------------CATATCTC------------------------------------------------------------------------------CGCG.....................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CA------------CAAACGACATATCTCCGCGT.....................................................................................................................	22	13	0.15	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AACGACATATCTCCGCGCGGA..................................................................................................................	21	14	0.14	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACATATCTCCGCGCAGCGAT--------------------------------------------------------------------------	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TCTCCGCCGTGTCA------------CAAACGA..................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TCTCCGCCGTGTCA------------CAAACGACATATC............................................................................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................AACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGGA.................................................................................................................................................................................................	21	14	0.14	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CGACATATCTCCGCGCGGAGC................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CGACATA----TCTCCGCCGTGTCA------------CAAA.....................................................................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................TCA------------CAAACGACATATCTCCGC.......................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGTCA------------CAAACGACATATCTCC.........................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGT..................................................................................................................................................................................................	21	18	0.11	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CA------------CAAACGACATATCTCCGCGCGG...................................................................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CATATCTCCGCGCGGAGCTAT.............................................................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GACATATCTCCGCGCGGAGCT...............................................................................................................	21	9	0.11	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGCGCGT...................................................................................................................	21	18	0.11	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AAACGA------------CATATCTC------------------------------------------------------------------------------CGCGC....................................................................................................................................................................................................	19	19	0.11	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGCGC.....................................................................................................................	19	19	0.11	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACAAACGA------------CATATCTC------------------------------------------------------------------------------CGC......................................................................................................................................................................................................	19	19	0.11	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................A------------CAAACGACATATCTCCGC.......................................................................................................................	19	19	0.11	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................T-GA-AACGACATA----TCTCCGCCGTG........................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.............................TGAAACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGTG.....................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................T-GA-AACGACATA----TCTCCGCCGTGT.......................................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.............................TGAAACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGTGT....................................................................................................................................................................................................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TTTT-GA-AACGACATA----TCTCCGCCG..........................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TTTT-GA-AACGACATA----TCTCCG.............................................................................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGACGTTTT-GA-AACGACATA----TCTCCGCC...........................................................................................................................................................	28	11	0.09	1	0	0	1	0	0	0	0	0	0	0
.........................TTT-TGAAACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CG.......................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..........................TT-TGAAACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TTT-GA-AACGACATA----TCTCCGC............................................................................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
....................TGACGTTT-TGAAACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------C........................................................................................................................................................................................................................................................................................................................	28	11	0.09	1	0	0	1	0	0	0	0	0	0	0
.........................TTT-TGAAACGACATATCTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CA------------CAAACGACATATCTCCGCGCG....................................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................A-AACGACATA----TCTCCGCCGTG........................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CA------------CAAACGACATATCTCCGCGC.....................................................................................................................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................AAACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGTG.....................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGCGCGG...................................................................................................................	22	14	0.07	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................A------------CAAACGACATATCTCCGCGCGG...................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGG..................................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AACGACATATCTCCGCGCGG...................................................................................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGCGCGG...................................................................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CA------------CAAACGACATATCTCCG........................................................................................................................	19	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CA------------CAAACGACATATCTCC.........................................................................................................................	18	14	0.07	1	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................CAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGG..................................................................................................................................................................................................	22	14	0.07	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................AACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGG..................................................................................................................................................................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGG..................................................................................................................................................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ACGACATATCTCCGCGCGGAG.................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGGAG................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGCGT.....................................................................................................................	20	19	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGT....................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CATATCTCCGCGCGGA..................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................CATATCTC------------------------------------------------------------------------------CGCGCGGA.................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

CATATCTCCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGATCCACAAACGA------------CATATCTC------------------------------------------------------------------------------TGATCGAAATTATGTCGTTTT-------------------------------------------AAAGCGACATACCTCCGCGCGGAGATATGTCGTCT-CAAAACGTCATAACTCCGCGCGGAGATATGTCGTTTGTGACATGGCGGAGATATGTCGTTTCGAAACGACTTAAGTCCGCCAGAAAAT-----A-------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................TCCACAAACGA------------CATATCTC------------------------------------------------------------------------------TGATCGAAA................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0
................................................................................................................................................................................AACGA------------CATATCTC------------------------------------------------------------------------------TGATCGAAATTATGT..........................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGTGACATGGCGGAGATATG..............................................	20	1	1.00	1	0	0	0	0	0	1
...........................................TCCGC-----------------------------------------------------------------------------------------------------------------------CGATCCACAAACGA------------CATATCTC------------------------------------------------------------------------------T........................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..TATCTCCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGA......................................................................................................................................................................................................................................................................................................................	26	3	0.67	2	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGATATGTCGTTTGTGA.............................................................	26	4	0.50	2	2	0	0	0	0	0
..........................................CTCCGC-----------------------------------------------------------------------------------------------------------------------CGATCCACAAACGA------------C..............................................................................................................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0
....TCTCCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGATCC...................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
CATATCTCCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CG.......................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
...........................................TCCGC-----------------------------------------------------------------------------------------------------------------------CGATCCACAAACGA------------CATATCTC------------------------------------------------------------------------------.........................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
....TCTCCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGATC....................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0
......TCCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGATC....................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
......TCCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGATCCACA................................................................................................................................................................................................................................................................................................................	28	3	0.33	1	0	1	0	0	0	0
......TCCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGA......................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
.......................................TATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGATCCACAAACGA------------CATATC.........................................................................................................................................................................................................................................................................................	29	3	0.33	1	0	1	0	0	0	0
.......................................TATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGATCCACAAACGA------------CA.............................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
.......CCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CGATCCAC.................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGATATGTCGTTTGTGACA...........................................................	28	4	0.25	1	0	1	0	0	0	0
..TATCTCCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0
..TATCTCCG-----------------------ACGACATATCTCCGT-----------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0
......TCCG-----------------------ACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CT.......................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0
..TATCTCCG-----------------------ACGACATATCTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGTCGTTTG................................................................	22	7	0.14	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................CGCGGAGATATGTCGTTTGTG..............................................................	21	8	0.13	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATATGTCGTTTGT...............................................................	19	12	0.08	1	0	0	0	0	0	1

droKik1

TAT--CTCCGCGCGGAGTTATGTCGCTT-TAAAACGACATATCTCCGC-----------------------------------------------------------------------------------------------------------------------CAAACTAGAAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGGAGTTATGTCGCTCT-AA-AGCGACATA----TCTCCGCCGAACTA------------GAAACGACATATCTCCGCGCGGAGCTATGTCGTTT-TAAAGTGACATAACTCCGCGCGGAGGTATGTCGTTGCT---------------------------------------------------TACGA-------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CATAAGTCCGC------------CGTAGAAAAAACGACATAATTTCGG-----------------------------------------------------------------------------------------------------------------------TAGCCGCAGAATAAACTGCTAAGCGACATAAGTT------------------------------------------------------------------------------CGCGCGAAATTATGTCGTTTT-AA------------------------------------------AAC----TATTTGTGC-CGGACTTATGTCGTTT-TAAAGTGACCTAATTTCGCGGGGAAAAACGACATAATT---------------------------------------------------TC----------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTATTTG---GGGGAATTCTGTCGCTT-AAAAGCGACACAGCTCCCC------------------------------------------------------------------------CATTGACTAACGCGGAGTTATGTCGTCTAA-------------------------AAACGA------------CATATCTC------------------------------------------------------------------------------CGCGGGGAGATATGACGTTTA-------------------------------------------AAAACGACATATCTCCGCTCGAAAATATTTCGTTT-TA-AACGACATATCTCCGCGCGGAGATATGTCGTTTGT---------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TATATCTCCGC----------------------ACGACATATCTCCGCT----CGGTACAAT----------------------------------------------------------------------------------------------------------------------------------------TTTCGAGCG----GAATTATGTCGTTTTTTTTGGCGGAGCTATATCGTTTTTAAAACGTCAT--------------ATCTCCGCGCGGAGTTATGTCGCTTTTAA-AACGACATATGTATCTCCGCTGACCAA------------AAAGCGACATATTTCCGCGCGGAGATATGACGTTT-CAAGACGACATATCTCCGCGCGGAG----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTATTTA---GCGGAGATTTGACGTTT-AAAAACGACATATCTCCCC------------------------------------------------------------------------CGTTAATCAACGCGGAGATATGACGTTTAAAAACGACATATCTTCGCCCATTTAAGAACGA------------CATATCTC------------------------------------------------------------------------------CGCGCGGAGATGTGACGTTTA-------------------------------------------AAAACGAAATATTTTCGCGCGGAGATATGTCGTTT-TTAAACGTCATATCTCCGCGCGGAGATAAGTCGTTTGT---------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droYak3

TAA--TTTCG-GATGAGATATGTCGCTT-TGAA-----------------------------------------------------------------------------------------------------------------------------------------------AACGA------------CATATCTC-----------------------------------------------------------CTCCGAACTCAAAAAACTTCGGGAGGAGATATGTCGTTTT-GAAAACGACACA----ACTCATCCA-----------------------GCTTATTATCG-GCGGAGATGTGTCGTTTTTGGAGATACAT---------------------------------------------CATCTTAAAAA----------CGAC-----ACAGC----------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................................................TATTATCG-GCGGAGATGTGTC..........................................................................................................	21	4	0.50	2	0	1	0	0	0	0	1	0	0	0	0
.............................TGAA-----------------------------------------------------------------------------------------------------------------------------------------------AACGA------------CATATCTC-----------------------------------------------------------CTCCGAACT...................................................................................................................................................................................................................	26	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................AGATACAT---------------------------------------------CATCTTAAAAA----------CGAC-----A..............	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................AGATACAT---------------------------------------------CATCTTAAAAA----------CGAC-----ACAGC----------	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TCGTTTTTGGAGATACAT---------------------------------------------CATCT........................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACTCATCCA-----------------------GCTTATTATCG-GCGGAGA................................................................................................................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TACAT---------------------------------------------CATCTTAAAAA----------CGAC-----ACAGC----------	25	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TTTGGAGATACAT---------------------------------------------CATCTTAAAAA----------CGAC-----A..............	29	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CA-----------------------GCTTATTATCG-GCGGAGATGTG............................................................................................................	24	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GTCGTTTTTGGAGATACAT---------------------------------------------CATCT........................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TATTATCG-GCGGAGATGTGTCG.........................................................................................................	22	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TATCG-GCGGAGATGTGTCGTTTT.....................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TATTATCG-GCGGAGATGTGTCGTTT......................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TGTGTCGTTTTTGGAGATACAT---------------------------------------------CATC.........................................	26	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CGA------------CATATCTC-----------------------------------------------------------CTCCGAA.....................................................................................................................................................................................................................	18	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

-------------GGAAATATGTCGTTTTTGAATCGACATATCCTCGG-----------------------------------------------------------------------------------------------------------------------CGAACTAAACTCGA------------CATATCTCCGTCCTTTTC-----------------------------------------------------------------TTATTGGTGGAGTTATGTCGCTTTAAA-AACGATATA----TTTCCGTCAAACTA------------AAAACGACATATCTCCGCGCGGAACTTTGTTGTTT-TACAACGACATTATTCCGCGCAGAGATATGACGTT------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................TAAACTCGA------------CATATCTCCGTCCTT................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0

dvi_2780

scaffold_12822:4011472-4011622 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATAACTCCGCGGGGAGATTTGACGTTCCGAAACGACATAGCTCCCCGAGGTCGGTGCGAAAATCGAAACATGTTCGATGATTTTTTTTAATATTTCGGGTAATAGCTTCGCGCGGAGATATGACGCTCCAGAACAACATAACTCTGCGCGGAGATATGGCGTTCCAAAACGACATAACTCCGCGCGGAGATATGACGTTTCAAAACGACATAACTCCCCGCGGAGATATGACCTTCATCACGATTTTTTT **************************************************************************************************************************..................((((((((((((.((((.((((....)))).)))).))))))))))))....*******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060672 9x160_females_carcasses_total	SRR060676 9xArg_ovaries_total	M028 head	SRR060682 9x140_0-2h_embryos_total	M047 female body	SRR060656 9x160_ovaries_total	SRR060675 140x9_ovaries_total	SRR060667 160_females_carcasses_total	M027 male body	GSM1528803 follicle cells	SRR060677 Argx9_ovaries_total	SRR060678 9x140_testes_total	SRR060679 140x9_testes_total	SRR060684 140x9_0-2h_embryos_total	SRR060654 160x9_ovaries_total	SRR060688 160_ovaries_total	SRR060674 9x140_ovaries_total	SRR060657 140_testes_total	SRR060665 9_females_carcasses_total	SRR060668 160x9_males_carcasses_total	SRR060671 9x160_males_carcasses_total	SRR060683 160_testes_total	SRR060689 160x9_testes_total	SRR1106730 embryo_16-30h	V116 male body
............................................................................................................................CGCTCCAGAACAACATAACTCTGCGC.....................................................................................................	26	0	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CCGAAACGACATAGCTCCCCG...........................................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGACATAACTCCCCGCGGAGA........................	21	0	20	0.40	8	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................CAACATAACTCTGCGCGGAGA................................................................................................	21	0	14	0.29	4	0	1	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................ACATAACTCCGCGCGGAGATAT.........................................................	22	0	20	0.25	5	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CCGGGACGACATAGCTCCCCG...........................................................................................................................................................................................................	21	2	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................CAACATAACTCTGCGCGGAGAT...............................................................................................	22	0	13	0.23	3	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AACAACATAACTCTGCGCGGA..................................................................................................	21	0	14	0.21	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AACAACATAACTCTGCGCGGAG.................................................................................................	22	0	13	0.15	2	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTCAAAACGACATAACTCCCC...............................	21	0	20	0.15	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTCCGGAACGACATAGCTCCC.............................................................................................................................................................................................................	21	1	7	0.14	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ACGACATAACTCCGCGCGGAGAT...........................................................	23	0	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GCTTCGCGCGGAGATATGACG.............................................................................................................................	21	0	20	0.10	2	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CATAACTCTGCGCGGAGATAT.............................................................................................	21	0	20	0.10	2	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GGAGATATGACGTTTCAAAACG...........................................	22	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ACATAACTCCCCGCGGAGATAT.....................	22	0	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTTCAAAACGACGTAACTCCCCGCGGAGATA......................	31	1	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................CAACATAACTCTGCTCGGAGA................................................................................................	21	1	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................TGATTTTTTTTAATATTTCGG........................................................................................................................................................	21	0	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................GTATTTCGGTTGATAGCTTCG............................................................................................................................................	21	3	17	0.06	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AGCAACATAACTCTGCGCGGA..................................................................................................	21	1	18	0.06	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CGCGCGGAGATATGAC......................................................	16	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................GTTCCAAAACGACATAACTCCGCGCGG...............................................................	27	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GTAATAGCTTCGCGCGGAGAT...................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................CGATGATTTTTTTTAATATTT...........................................................................................................................................................	21	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTCAAAACGACATAACTCCC................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................ACGTTTCAAAACGACATAACTCCCCG..............................	26	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTTCAAAACGACATAACTCCC................................	21	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CCGCGCGGAGATATGACGT....................................................	19	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTTCCCCGAGGGCGGTGCGA...............................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................GCGGAGATATGGCGTTCCAAA..................................................................................	21	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................AGCTTCGCGCGGAGATATGACG.............................................................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................ACGACATAACTCCCCGCGGAGA........................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................GAGATATGACGTTTCAAAACG...........................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................................CGAGGTCGGTGCGAAAATCG.........................................................................................................................................................................................	20	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TAACTCCCCGCGGAGATATG....................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................CCGCGCGGAGATATGACGTT...................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................................AAAACGACATAACTCCCCGCGG...........................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................AACATAACTCTGCGCGGAGA................................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ACATAACTCTGCGCGGAGATA..............................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TGACGTTCCGAAACGACAT....................................................................................................................................................................................................................	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................AACCTGGTCGATGATTTT......................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ACATAACTCCCCGCGGAGATA......................	21	0	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

GTATTGAGGCGCCCCTCTAAACTGCAAGGCTTTGCTGTATCGAGGGGCTCCAGCCACGCTTTTAGCTTTGTACAAGCTACTAAAAAAAATTATAAAGCCCATTATCGAAGCGCGCCTCTATACTGCGAGGTCTTGTTGTATTGAGACGCGCCTCTATACCGCAAGGTTTTGCTGTATTGAGGCGCGCCTCTATACTGCAAAGTTTTGCTGTATTGAGGGGCGCCTCTATACTGGAAGTAGTGCTAAAAAAA *******************************************************..................((((((((((((.((((.((((....)))).)))).))))))))))))....**************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	V053 head	SRR060679 140x9_testes_total	SRR060669 160x9_females_carcasses_total	SRR060681 Argx9_testes_total	SRR060676 9xArg_ovaries_total	SRR060677 Argx9_ovaries_total	SRR060673 9_ovaries_total	SRR060675 140x9_ovaries_total	SRR060689 160x9_testes_total	SRR060688 160_ovaries_total	SRR060654 160x9_ovaries_total	SRR060665 9_females_carcasses_total	SRR060657 140_testes_total	M028 head	SRR060656 9x160_ovaries_total	SRR060662 9x160_0-2h_embryos_total
..........................................................................................................................................................................GCTGTATTGAGGCGCGCCTCT............................................................	21	0	20	1.15	23	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TCGGAGCGCGCCTCTATACTGCGAG..........................................................................................................................	25	1	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................AGCGCGACTCTATACTGCGA...........................................................................................................................	20	1	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CGACCCTTTTAGCGTTGTACAA................................................................................................................................................................................	22	3	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTGAGGCGCCCCTCTAAACTG...................................................................................................................................................................................................................................	21	0	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................TATCGAAGCGCGCCTCTATACT...............................................................................................................................	22	0	20	0.30	6	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................................GCTGTATTGAGGGGCGCCTCTAT......................	23	0	20	0.30	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GTTGTATTGAGACGCGCCTCT................................................................................................	21	0	14	0.29	4	0	0	0	0	0	1	0	0	1	0	2	0	0	0	0	0	0
....................................................................................................................................................................................GGCGCGCCTCTATACTGCAA...................................................	20	0	20	0.25	5	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TATTGAGGGGCGCCTCTATAC....................	21	0	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0
..........................................................................................................GGAGCGCGCCTCTATACTGCG............................................................................................................................	21	1	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TCGGAGCGCGCCTCTATACT...............................................................................................................................	20	1	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATTGAGGGGCGCCTCTATAC....................	20	0	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.....................................................................................................................................TGTTGTATTGAGACGCGCCTCTA...............................................................................................	23	0	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TGTTGTATTGAGACGCGCCTC.................................................................................................	21	0	13	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................TTGTTGTATTGAGACGCGCC...................................................................................................	20	0	14	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................TGTTGTATTGAGACGCGCCT..................................................................................................	20	0	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................GAGCGCGCCTCTATACTGCGAG..........................................................................................................................	22	1	19	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTTTGCTGTATTGAGGCGCGCC...............................................................	22	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GGTATTGAGACGCGCCTCTATAC............................................................................................	23	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................CGCGCCTCTATACTGCGAGGT........................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ATTGAGACGCGCCTCTATA.............................................................................................	19	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TATTGAGGGGCGCCTCTATACT...................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................ATCGAAGCGCGCCTCTATACT...............................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GGCGCCTCTATGCTGGAAGTA............	21	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TACCGCAAGGTTTTGCTGTAT..........................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................TTATCCAAGCGCGCCTCTAT..................................................................................................................................	20	1	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................CCTTGTACTAGCTACTAAAT......................................................................................................................................................................	20	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CTCTATACCGCAAGGTTTTGC...............................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................ACTGCAAGGCTTTGCTGTATC..................................................................................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......GGCGCCCCTCTGAACTGCAAG...............................................................................................................................................................................................................................	21	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

-31.1	-31.1