ID:

dvi_2778

 Coordinate:

scaffold_12822:3955534-3955684 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ14160-cds]; exon [dvir_GLEANR_14113:2]; intron [Dvir\GJ14160-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATTGTTGATGTGGCCAAGTTTACGGCTAGCCCGGGACTGAGCACAGCGGGTGAGTTACGGCAAGCACCTTGCCCCGCAGCACTTTGAGCGAATAAATTATAATTAAGCTGCGCGCAAATAATATACAAAATGTGCGGTAACAACGGCAGAAAATTAAGAACGTGCCGTTCGCATTGTACGCGACAGGGTATTAGTCCACGAGGCCAATTAAAAAGAAATTGCTCAAATGAGCTGGCGTCTGGACCTCGGA
**************************************************(((......((((((...)))))).((((((..........................))))))......((((((......((((((((...(((((((..............)))))))...)))))))).......))))))...))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V053
head
 SRR060674
9x140_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060678
9x140_testes_total
 V116
male body		 M027
male body		 SRR060663
160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 M028
head
 SRR060660
Argentina_ovaries_total
........................GGCTAGCCCGGGACTGAGCACAGC........................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................TGAGCACAGCTGGTGGTTTAC................................................................................................................................................................................................ 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TCCACAAGGCCAATTCAAAA.................................... 20 2 6 0.33 2 0 0 1 0 1 0 0 0 0 0 0 0
.ATTGTTGGTGTGGCCAAGTCC..................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TCCACAAGGCCAATTCAAAAAAA................................. 23 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................TGAACACAGCTGGTGAGTGA................................................................................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................CCGGGACTGAGGACTGCGA......................................................................................................................................................................................................... 19 3 20 0.15 3 1 0 0 0 0 0 0 2 0 0 0 0
...............................CTGGGACTGAGCACTGCG.......................................................................................................................................................................................................... 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................GCCTGGGACTGAGGACTGCG.......................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0
..................GTTTAGGGCTAGCCTCGGA...................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................GAGAGGGTAATCGTCCAC................................................... 18 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................TGAACAGAGCGGGTGGGTT.................................................................................................................................................................................................. 19 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................TGAGCACAGCGGGTGGATA.................................................................................................................................................................................................. 19 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ATACGCGACGGGGTATTG......................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................GAAAATTAAGTACGGGCCA................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................GCCGTTCGCAGTGGAAGCG.................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................CTGAACTGGCGTCTGCACC..... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TTAACAACTACACCGGTTCAAATGCCGATCGGGCCCTGACTCGTGTCGCCCACTCAATGCCGTTCGTGGAACGGGGCGTCGTGAAACTCGCTTATTTAATATTAATTCGACGCGCGTTTATTATATGTTTTACACGCCATTGTTGCCGTCTTTTAATTCTTGCACGGCAAGCGTAACATGCGCTGTCCCATAATCAGGTGCTCCGGTTAATTTTTCTTTAACGAGTTTACTCGACCGCAGACCTGGAGCCT
**************************************************(((......((((((...)))))).((((((..........................))))))......((((((......((((((((...(((((((..............)))))))...)))))))).......))))))...))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060656
9x160_ovaries_total
 SRR060657
140_testes_total
..........................................................................................................................................................................TCGTTACATGCGCAGTCCCA............................................................. 20 3 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................................................AACGAGTTTAGTCACCCGCAG........... 21 3 7 0.14 1 0 1 0 0 0
.....................................................................................................CTAATTCGACGCGCGTTCTT.................................................................................................................................. 20 3 10 0.10 1 0 0 1 0 0
.................................................................GTGGTCTGGGGCGTCGTGA....................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0
...............................GGCCCTGAAGAGTGTCGC.......................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12822:3955484-3955734 - dvi_2778 AATTGTTGATGTGGCCAAGTTTACGGCTAGCCCGGGACTGAGCACAGCGGGTGAGTTA------------------------------------------------------------------------CG--------G-CA--------------------------------------------------------------------------------------------------AGC-ACC--T--------------TG----------------------------------CCCC---------------GCAGCACTTTGAGCGAATAAATTATAATTAAGCTGCGCGCAAATAATATACAAAAT-------------------GTGCGGTAACAACGGC----------------------------AGAAAATTAAGAACGTGCCGTTCGCATTG---------------------------------------------TACGC-----GA--CAGGG--------------------------------------------------------TAT------------TAGTCCACGAG-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAATGAGCTGGCG-TCTGGAC---CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGA
droMoj3 scaffold_6540:17229547-17229864 - AATTGTTGATGTGGCCAAGTTTACGGCAAGCCCAGGACTGAGCACAGCTGGTAAGTTTG------------------------------------------------------------------------------------------AG-CG-------------------------------------------------------ACGACCTTG-------------CCC--C----AGGCGAAT-------------------------------------------------------------------CACCCGAGGTACTTTGGCTGAATAAATTATAATTAAGCTGCGC--GAA--TTATATGAAAT-ATTTTG---CTACTAATTGTGCGGTAACAACGAA----------------------------ACACAATTTGGCACGTGCCGCCCACTTT---TGCCCACATTACAG-------------------------ATGCTGCGA-----GT--C------------------------------------------------------------AGT--------CCCCCCCGCCAACAC--------------------------------------------------------------AGGCTCAAGTCTTAGCCCAGTCCATGGGCCAATTAAAAAGAAATTGCTCAAATGCAGTGGCG-CCTGGAC---TCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droGri2 scaffold_14906:1509390-1509741 - AATTGTTGATGTGGCCAAGTTTACGGCGAGCCCAGGACTGAGCACAGCGGGTAAGTTGC------------------------------------------------------------------------C--------A-----------CG-----------------------------------------------------------------TCGACCTTG---CCC--C----A-----------------------------------------------------------------AAGCGGTGGCAACCGAAGTACTTTGAGTGAATAAATTATAATTAAGCTGCGC--AAA--TTATACAAAATT-TGTTG---TTCCTAATTGAGCGGTAACAACGGA----------------------------GCAT-ATTTAGCACGTGCCGTTC------------------------------------------------------------------------------------CCTTGTTC--GTT-----------------------------------------------CCCAAAACACGACAGCACTGGATAAGGACATGGATAAGGACAAAGCCGGTAGAAGGCTGTAGGAGAGTCGAGGCTCAAGTCGTAACTCCCTCCATTGGCCAATTAAAAATGAATTGCTCAAACGCAATAGCG-TCCGGAC---TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA
droWil2 scf2_1100000004943:11694570-11694980 - AATTGTTGATGTGGCCAAGTTCACGGCGAGTCCAGGACTGAGCACAGCGGGTAAGAGTT------------------------------------------------CATTTTTTT-CGGATATATTCAACG--------A-----------CCTCGACCTTGTTGCGACTAGAGAGACTGAACGAGGAAGTAATAGGCAGAG-------------------------------------------ACC--A--------------AG----------------------------------C----------------------CCATTTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGTGG---CTACTAATTGTGCAGCAA------AACACAATGGCAACATGGAATAGAAGGGACCAT-AACTAGCACGTGTGACTCACCCA-CCCACCCACATTCCAACCCCATATATCCTCTCTATATACATATTTCCTTC-----TCC-CAGGGGCGC----------------TC--TAT-------------------------------CAAGACCGCCGC-CCCCCCAAAAT------------------------------------------------------------------------CTT--------------ACCAATTAAAAAGAAATTGCTCAAGTGCAAAGGCG-TCCGGAC---TTGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
dp5 2:6500394-6500697 - AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCAGGACTGAGCACAGCGGGTGAGTGTA---------------------------------------CT-------CATATTTTGTT----G-TT--GTTG------TTC-CAGAATGGGA-G-------------------------------------------------------GCGACCTTGTTCGATTTGG---CCCGAC----AGGC-ACC--G--------------TTT------------------------------------------------------------CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGTTGGCTGTGGCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CAGGGCCCCCCCC-CAGG----------------------C--ATC-----------------------------TGG------------CAGCCCAAGAT-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGATG-CCTGGAC---CTGG----------------------------------------------------------------------------------------------------------------------------------------ACGAA----------------CAGCA---GGTCCCAGGCCC--------AGGA
droPer2 scaffold_0:325490-325790 - AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCAGGACTGAGCACAGCGGGTGAGTGTA---------------------------------------CT-------CATATTTTGTT----G-TT--GTT---------C-CAGAATGGGA-G-------------------------------------------------------GCGACCTTGTTCGATTTGG---CCCGAC----AGGC-ACC--G--------------TTT------------------------------------------------------------CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGTTGGCTGTGGCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CAGGGCCCCCCCC-CAGG----------------------C--ATC-----------------------------TGG------------CAGCCCAAGAT-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGATG-CCTGGAC---CTGG----------------------------------------------------------------------------------------------------------------------------------------ACGAA----------------CAGCA---GGTCCCAAGCCC--------AGGA
droAna3 scaffold_13340:8642891-8643316 - AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCGGGACTGAGCACAGCGGGTGAGTGTG-TATTTCT--------------------------------------------------CGGCAA-TC-------------------GATGGGA-----------------GTGGAGTGGGTAGGAGAGGAG-------------------GTGACCTTCTTCGATTTGG---CTC--C----TGGCTACGCAGACTTCCAGCTCCCGAGTCCCGACTTCCGGCTCCTGGCTTCAGGCTCCAGGCTCC-----------------AG-G--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CATGG-----TCC-CAGGGTCGT--------CAGTTTGTCA--GTTTCCCAGTTTCCCAGTTCGGCAGCCAGGGCAGC------------CTGCCCAAGAT-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCGGGAA--ACAGGACTG----------------GAGA----------GG---TCG-------------------------CGT---------------------------------------GTCC------------------TGCGGAAGAGGA-----------ATGAAACG---GC----------------TCCGAC
droBip1 scf7180000396708:204769-205113 + AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCGGGACTGAGCACAGCGGGTGAGTGTG-TATTTCT--------------------------------------------------TGGATA-TC--GATG--------G-AAGGAGGAGG----------------------------------------------AGGAGCATCCGGTGACCTTCCTCGATTTGG--GCTC--C----AGGCTACGCAGACTTCCAGCTCCCGGTTCCCTACTCC---------------------------C-----------------AGCG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGG-----TCC-CAGGGTCGT--------CAGATTGTCA--GATACC---------------------AAGCCAGC------------CAGCCCAAGAT-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCGGGCC--GCAGGACTG----------------GAGA----------CC---TCG-------------------------------------------------------------------------------------------------------------------------------------------------TG
droKik1 scf7180000302388:1431906-1432278 + AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCGGGACTAAGCACAGCGGGTGAGTCTA-TA-----TA-------TACA--TA----------TATC-TTCTCTTTA----GTTTTT----T-TT--A----------------AGTGAG-----------------------------------------------------------CAACCTTGTTCGATTCGGCGGCTC--C----TGGCTCC--AGACTCCGAGCTCTCGGCTCCCATTTC------CCTGGTTT-----T-CCGGCTCC-----------------AGAG--CTGTGTGAATAAATTATAATTAAGATGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CTGGGCGGCGGCTGTTGCCATTTGCCAGTGTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCGTCCAGGAC---CT------CC------------TGGAC-------------------------------------------------------------------------------------------------------------GTGGACGAG----------------ACGCA---AC--------------CATCCGGC
droFic1 scf7180000454106:780827-781157 - AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGTGTTATA-----TACCCAATA--GCTATA----------TATATTGCGC-C------TTTTTT----T-TC--GACG--------G-CGGGATGAGA----------------------------------------------------------CGACCTTGTTCGATTCGG---CCC--C----GGGCATCC---------------------------------------------------GACTCC-----------------AGTG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGC-GC----------------C-----------------------------------------------------CCCAAGAT-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGTC---CTGAA---CCTGAAC-------------------------------------------------------------------------------------------------------------------------------GGA----------------ACGGAACTGAACCTAAGCCAAAGGAACCCGGA
droEle1 scf7180000491212:2075252-2075645 - AATCGTTGATGTGGCCAAGTTCACAGCAAGTCCCGGACTGAGCACAGCGGGTGAGAATGATACTTCT------------------------TTATACAATCCAC-T------TGTTTT------ATAAGACG--------ACCACGATGAGA----------------------------------------------------------CGACCTTGTTCGATTTGG---CCC--C----AGGCTACACCT----------------ACCT-ACCA---------------------GCGGCTCC-----------------AGTG--TTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGACG---CTGGCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC--------CA---------------------------------------------------------CGCCCCAAGAC-----------------------------------------------------------------------------------------GGCAATTAAAAAGGAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAA---CCAGAACCAGAATCTGAACCTGAACCTGAACCTGTTCGTGGACTTGTAGGACTTGTAGATGGACGC---------------------------------------------------CGAA---------GGACGAA----------------GAGCA---GC--------------CATCCGGC
droRho1 scf7180000779983:22821-23173 - AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCCGGACTGAGCACAGCGGGTGAGAATTATA-----TA-----------------------TATACAATCCAC-T------TTC-TT----A-TT---ATG--------G-CACGATGGGA----------------------------------------------------------CGACCTTGTTCGATTTGG---CCC--C----AGGCTACC---------------------------------------------------GGCTCC-----------------AGTG--TTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-GAGGGCTGC--------CC---CGCCC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAA---CCTGTTCGTGGACCTGGACG--------------------------------------ATGGACGTG--------------------------------------------TTCG--CAAA-------GGGGAGGAG----------------GAGCA---GC--------------CATCCGGC
droBia1 scf7180000302402:6467078-6467498 + AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGCATTATA-----TATCCAATATACA--TA----------TAGATTCCAC-TTCATTTTTTGCT----G-TT--GACGGAGATGTGG-CGGAATGAGG----------------------------------------------------------CGACCTTGTTCGATGGGG---CCA--CCTACCAGCTACACCG--------------ACTTCCGACTC---------------------CCGGCTCC-----------------AGGG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CTC-CAGGGCCGC--------CGG--TGCCC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAGCAACTGAACTGCGTGAATCAGGACATGGACGTGGA---------------------------------------CGTG--------------------------------------GCCCC----G--CAAA---------GGACGAGGAGCAGAGAGTC-GCGGAGCA---GC--------------CATCCGGC
droTak1 scf7180000415711:1500159-1500531 + AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGCATTTTA-----TATACAATATACATATA----------TATATTCCAC-T------TTTATT----C-CT--GACG--------G-CGGAATGAGA----------------------------------------------------------CGACCTTGTTCGATTTGG---CCC--C----AGGCTACC--GACTACCG-------GCTACCAACTC---------------------CCGACTCC-----------------AGCG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCGGC----------------CC--GTT-----------------------------TGC------------AAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAA---CCTGAATCAGGACATGGGCGTGGA---------------------------------------CGAG--------------------------------------GCAG-------------------------AGG----------------GAGCA---GC--------------CATCCGGC
droEug1 scf7180000409490:944243-944466 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC----------------CC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAA---CCTGAATCAGGACGAGGACATGGA---------------------------------------CATG--------------------------------------GCAGCGGTAG--CAAAGGAGGATGAGGACGAG----------TAGGTGGAGC-----C--------------CATCCGGC
dm3 chr3R:17645035-17645425 - AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGGATTATA-----TACACAATACACCTATATATATATGTATACACTCCGC-T------TTTATT----T-TT--GACG--------G-CACAATGAGA----------------------------------------------------------CGACCTTGTTCGATTTGG---CCC--C----GGGCTACC--G--------------ATTCCTGACTCC-------------------------TCCAG---------------AGCG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC----------------CC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAG---CCTGAATCAGGACATGGACACGAACCCGGAC------GTGG---------------------A----------------------------------------------------TG------TGAATGTGGACGAG----------------GAGCA---GC--------------CATCCGAC
droSim2 3r:17181312-17181706 - dsi_11116 AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGGATTATA-----TACACAATACACCTATATAG--ATGTATACACTCCAC-T------TTTATT----T-TT--GACG--------G-CACAATGAGA----------------------------------------------------------CGACCTTGTTCGATTTGG---CCC--C----GGGTTACC--G--------------ATTCCTGACTCC-------------------------TCCAG---------------AGCG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC----------------CC--GTT-----------------------------AGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAG---CCTGAATCAGGACATGGACACGAACCCGGAC------GTGG---------------------A----------------------------------------------------TGTGAATGTGGATGTGGACGAG----------------GAGCA---GC--------------CATCCGGC
droSec2 scaffold_0:18017270-18017658 - AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGCATTATA-----TACACAATACACCTATATAG--ATGTATACACTCCAC-T------TTTATT----T-TT--GACG--------G-CACAATGAGA----------------------------------------------------------CGACCTTGTTCGATTTGG---TCC--C----GGGCTACC--G--------------ATTCCTGACTCC-------------------------TCAAG---------------AGCG--CTCTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTACCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC----------------CC--GTT-----------------------------AGC------------CATCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATGGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAG---CCTGAATCAGGACATGGACACGAAATTGGAC------GTGG---------------------A----------------------------------------------------TG------TGAATGTGGACGAG----------------GAGCA---GC--------------CATCCGGC
droYak3 3R:18466466-18466676 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CATGC-----CCCACAGGGCTGC--------CCCTTTGCCC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAG---CCTGAATCAGGACATGGACATGGA---------------------------------------CACG--------------------------------------G--------------------ATGTGGATGCG----------------GAGCA---GC--------------CATCCGGC
droEre2 scaffold_4820:10439978-10440404 + AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGCATTATA-----TACACAATACACCTATAT-----TGTATATACTCCAC-A------TTTATT----T-TT--GACG--------G-CACAATGAGACG-------------------------------------------------------ACGACCTTGTTCGATTTGG---CCC--C----TGGCTACC--G--------------ATGCCTGACTCC-------------------------TCCAC---------------AGCG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC--------CCGTTTGCCC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAA---CCGGAATCAGGACACGGACACGGA---------------------------------------CACGGACACGGGCACGGGCACGGACCCGAGCGTGGACGCGGA----------TG------TGGATGCCGACGAG----------------GAGCA---GC--------------CATCCGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AATTGTTGATGTGGCCAAGTTTACGGCTAGCCCGGGACTGAGCACAGCGGGTGAGTTA------------------------------------------------------------------------CG--------G-CA--------------------------------------------------------------------------------------------------AGC-ACC--T--------------TG----------------------------------CCCC---------------GCAGCACTTTGAGCGAATAAATTATAATTAAGCTGCGCGCAAATAATATACAAAAT-------------------GTGCGGTAACAACGGC----------------------------AGAAAATTAAGAACGTGCCGTTCGCATTG---------------------------------------------TACGC-----GA--CAGGG--------------------------------------------------------TAT------------TAGTCCACGAG-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAATGAGCTGGCG-TCTGGAC---CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................GGCTAGCCCGGGACTGAGCACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
AATTGTTGATGTGGCCAAGTTTACGGCAAGCCCAGGACTGAGCACAGCTGGTAAGTTTG------------------------------------------------------------------------------------------AG-CG-------------------------------------------------------ACGACCTTG-------------CCC--C----AGGCGAAT-------------------------------------------------------------------CACCCGAGGTACTTTGGCTGAATAAATTATAATTAAGCTGCGC--GAA--TTATATGAAAT-ATTTTG---CTACTAATTGTGCGGTAACAACGAA----------------------------ACACAATTTGGCACGTGCCGCCCACTTT---TGCCCACATTACAG-------------------------ATGCTGCGA-----GT--C------------------------------------------------------------AGT--------CCCCCCCGCCAACAC--------------------------------------------------------------AGGCTCAAGTCTTAGCCCAGTCCATGGGCCAATTAAAAAGAAATTGCTCAAATGCAGTGGCG-CCTGGAC---TCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AATTGTTGATGTGGCCAAGTTTACGGCGAGCCCAGGACTGAGCACAGCGGGTAAGTTGC------------------------------------------------------------------------C--------A-----------CG-----------------------------------------------------------------TCGACCTTG---CCC--C----A-----------------------------------------------------------------AAGCGGTGGCAACCGAAGTACTTTGAGTGAATAAATTATAATTAAGCTGCGC--AAA--TTATACAAAATT-TGTTG---TTCCTAATTGAGCGGTAACAACGGA----------------------------GCAT-ATTTAGCACGTGCCGTTC------------------------------------------------------------------------------------CCTTGTTC--GTT-----------------------------------------------CCCAAAACACGACAGCACTGGATAAGGACATGGATAAGGACAAAGCCGGTAGAAGGCTGTAGGAGAGTCGAGGCTCAAGTCGTAACTCCCTCCATTGGCCAATTAAAAATGAATTGCTCAAACGCAATAGCG-TCCGGAC---TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AATTGTTGATGTGGCCAAGTTCACGGCGAGTCCAGGACTGAGCACAGCGGGTAAGAGTT------------------------------------------------CATTTTTTT-CGGATATATTCAACG--------A-----------CCTCGACCTTGTTGCGACTAGAGAGACTGAACGAGGAAGTAATAGGCAGAG-------------------------------------------ACC--A--------------AG----------------------------------C----------------------CCATTTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGTGG---CTACTAATTGTGCAGCAA------AACACAATGGCAACATGGAATAGAAGGGACCAT-AACTAGCACGTGTGACTCACCCA-CCCACCCACATTCCAACCCCATATATCCTCTCTATATACATATTTCCTTC-----TCC-CAGGGGCGC----------------TC--TAT-------------------------------CAAGACCGCCGC-CCCCCCAAAAT------------------------------------------------------------------------CTT--------------ACCAATTAAAAAGAAATTGCTCAAGTGCAAAGGCG-TCCGGAC---TTGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................GTCCAGGACTGAGCACAGCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..............CCAAGTTCACGGCGAGTCCAGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
dp5
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCAGGACTGAGCACAGCGGGTGAGTGTA---------------------------------------CT-------CATATTTTGTT----G-TT--GTTG------TTC-CAGAATGGGA-G-------------------------------------------------------GCGACCTTGTTCGATTTGG---CCCGAC----AGGC-ACC--G--------------TTT------------------------------------------------------------CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGTTGGCTGTGGCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CAGGGCCCCCCCC-CAGG----------------------C--ATC-----------------------------TGG------------CAGCCCAAGAT-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGATG-CCTGGAC---CTGG----------------------------------------------------------------------------------------------------------------------------------------ACGAA----------------CAGCA---GGTCCCAGGCCC--------AGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................TCACAGCGAGTCCAGGACTGAGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...............CAAGTTCACAGCGAGTCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCAGGACTGAGCACAGCGGGTGAGTGTA---------------------------------------CT-------CATATTTTGTT----G-TT--GTT---------C-CAGAATGGGA-G-------------------------------------------------------GCGACCTTGTTCGATTTGG---CCCGAC----AGGC-ACC--G--------------TTT------------------------------------------------------------CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGTTGGCTGTGGCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CAGGGCCCCCCCC-CAGG----------------------C--ATC-----------------------------TGG------------CAGCCCAAGAT-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGATG-CCTGGAC---CTGG----------------------------------------------------------------------------------------------------------------------------------------ACGAA----------------CAGCA---GGTCCCAAGCCC--------AGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................CGAGTCCAGGACTGAGCACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
...............CAAGTTCACAGCGAGTCCAGGACTGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
...........................GAGTCCAGGACTGAGCACAGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.............................GTCCAGGACTGAGCACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droAna3
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCGGGACTGAGCACAGCGGGTGAGTGTG-TATTTCT--------------------------------------------------CGGCAA-TC-------------------GATGGGA-----------------GTGGAGTGGGTAGGAGAGGAG-------------------GTGACCTTCTTCGATTTGG---CTC--C----TGGCTACGCAGACTTCCAGCTCCCGAGTCCCGACTTCCGGCTCCTGGCTTCAGGCTCCAGGCTCC-----------------AG-G--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CATGG-----TCC-CAGGGTCGT--------CAGTTTGTCA--GTTTCCCAGTTTCCCAGTTCGGCAGCCAGGGCAGC------------CTGCCCAAGAT-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCGGGAA--ACAGGACTG----------------GAGA----------GG---TCG-------------------------CGT---------------------------------------GTCC------------------TGCGGAAGAGGA-----------ATGAAACG---GC----------------TCCGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................GTGGAGTGGGTAGGAGAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.......................CAGCGAGTCCGGGACTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCGGGACTGAGCACAGCGGGTGAGTGTG-TATTTCT--------------------------------------------------TGGATA-TC--GATG--------G-AAGGAGGAGG----------------------------------------------AGGAGCATCCGGTGACCTTCCTCGATTTGG--GCTC--C----AGGCTACGCAGACTTCCAGCTCCCGGTTCCCTACTCC---------------------------C-----------------AGCG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGG-----TCC-CAGGGTCGT--------CAGATTGTCA--GATACC---------------------AAGCCAGC------------CAGCCCAAGAT-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCGGGCC--GCAGGACTG----------------GAGA----------CC---TCG-------------------------------------------------------------------------------------------------------------------------------------------------TGSizeHit CountTotal NormTotal
No Reads
droKik1
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCGGGACTAAGCACAGCGGGTGAGTCTA-TA-----TA-------TACA--TA----------TATC-TTCTCTTTA----GTTTTT----T-TT--A----------------AGTGAG-----------------------------------------------------------CAACCTTGTTCGATTCGGCGGCTC--C----TGGCTCC--AGACTCCGAGCTCTCGGCTCCCATTTC------CCTGGTTT-----T-CCGGCTCC-----------------AGAG--CTGTGTGAATAAATTATAATTAAGATGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CTGGGCGGCGGCTGTTGCCATTTGCCAGTGTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCGTCCAGGAC---CT------CC------------TGGAC-------------------------------------------------------------------------------------------------------------GTGGACGAG----------------ACGCA---AC--------------CATCCGGCSizeHit CountTotal NormTotal
No Reads
droFic1
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGTGTTATA-----TACCCAATA--GCTATA----------TATATTGCGC-C------TTTTTT----T-TC--GACG--------G-CGGGATGAGA----------------------------------------------------------CGACCTTGTTCGATTCGG---CCC--C----GGGCATCC---------------------------------------------------GACTCC-----------------AGTG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGC-GC----------------C-----------------------------------------------------CCCAAGAT-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGTC---CTGAA---CCTGAAC-------------------------------------------------------------------------------------------------------------------------------GGA----------------ACGGAACTGAACCTAAGCCAAAGGAACCCGGASizeHit CountTotal NormTotal
No Reads
droEle1
AATCGTTGATGTGGCCAAGTTCACAGCAAGTCCCGGACTGAGCACAGCGGGTGAGAATGATACTTCT------------------------TTATACAATCCAC-T------TGTTTT------ATAAGACG--------ACCACGATGAGA----------------------------------------------------------CGACCTTGTTCGATTTGG---CCC--C----AGGCTACACCT----------------ACCT-ACCA---------------------GCGGCTCC-----------------AGTG--TTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGACG---CTGGCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC--------CA---------------------------------------------------------CGCCCCAAGAC-----------------------------------------------------------------------------------------GGCAATTAAAAAGGAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAA---CCAGAACCAGAATCTGAACCTGAACCTGAACCTGTTCGTGGACTTGTAGGACTTGTAGATGGACGC---------------------------------------------------CGAA---------GGACGAA----------------GAGCA---GC--------------CATCCGGCSizeHit CountTotal NormTotal
No Reads
droRho1
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCCGGACTGAGCACAGCGGGTGAGAATTATA-----TA-----------------------TATACAATCCAC-T------TTC-TT----A-TT---ATG--------G-CACGATGGGA----------------------------------------------------------CGACCTTGTTCGATTTGG---CCC--C----AGGCTACC---------------------------------------------------GGCTCC-----------------AGTG--TTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-GAGGGCTGC--------CC---CGCCC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAA---CCTGTTCGTGGACCTGGACG--------------------------------------ATGGACGTG--------------------------------------------TTCG--CAAA-------GGGGAGGAG----------------GAGCA---GC--------------CATCCGGCSizeHit CountTotal NormTotal
No Reads
droBia1
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGCATTATA-----TATCCAATATACA--TA----------TAGATTCCAC-TTCATTTTTTGCT----G-TT--GACGGAGATGTGG-CGGAATGAGG----------------------------------------------------------CGACCTTGTTCGATGGGG---CCA--CCTACCAGCTACACCG--------------ACTTCCGACTC---------------------CCGGCTCC-----------------AGGG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CTC-CAGGGCCGC--------CGG--TGCCC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAGCAACTGAACTGCGTGAATCAGGACATGGACGTGGA---------------------------------------CGTG--------------------------------------GCCCC----G--CAAA---------GGACGAGGAGCAGAGAGTC-GCGGAGCA---GC--------------CATCCGGCSizeHit CountTotal NormTotal
No Reads
droTak1
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGCATTTTA-----TATACAATATACATATA----------TATATTCCAC-T------TTTATT----C-CT--GACG--------G-CGGAATGAGA----------------------------------------------------------CGACCTTGTTCGATTTGG---CCC--C----AGGCTACC--GACTACCG-------GCTACCAACTC---------------------CCGACTCC-----------------AGCG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCGGC----------------CC--GTT-----------------------------TGC------------AAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAA---CCTGAATCAGGACATGGGCGTGGA---------------------------------------CGAG--------------------------------------GCAG-------------------------AGG----------------GAGCA---GC--------------CATCCGGCSizeHit CountTotal NormTotal
No Reads
droEug1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC----------------CC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAA---CCTGAATCAGGACGAGGACATGGA---------------------------------------CATG--------------------------------------GCAGCGGTAG--CAAAGGAGGATGAGGACGAG----------TAGGTGGAGC-----C--------------CATCCGGCSizeHit CountTotal NormTotal
No Reads
dm3
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGGATTATA-----TACACAATACACCTATATATATATGTATACACTCCGC-T------TTTATT----T-TT--GACG--------G-CACAATGAGA----------------------------------------------------------CGACCTTGTTCGATTTGG---CCC--C----GGGCTACC--G--------------ATTCCTGACTCC-------------------------TCCAG---------------AGCG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC----------------CC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAG---CCTGAATCAGGACATGGACACGAACCCGGAC------GTGG---------------------A----------------------------------------------------TG------TGAATGTGGACGAG----------------GAGCA---GC--------------CATCCGACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................CTGAGCACAGCGGGTGAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.ATCGTTGATGTGGCCAAGTTCACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGACGAG----------------GAGCA---GC--------------C.......2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTCACAGCGAGTCCTGGACTGAGCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGAG----------------GAGCA---GC--------------CAT.....1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTGGACTGAGCACAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
......................ACAGCGAGTCCTGGACTGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTGGCCAAGTTCACAGCGAGTCCTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCT........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................CCTGGACTGAGCACAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGC----------------CC--GTT-----------------------------TGC------------CAGC...............................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATCGTTGATGTGGCCAAGTTCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CC--G--------------ATTCCTGACTCC-------------------------TCCAG---------------AGCG--C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGCGAGTCCTGGACTGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGGACTGAGCACAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGTGGACGAG----------------GAGC............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................AGCGAGTCCTGGACTGAGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCT........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ACAGCGAGTCCTGGACTGAGCACAGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................GTCCTGGACTGAGCACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................TTCACAGCGAGTCCTGGACTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................CAGCGAGTCCTGGACTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC-CAGGGCTGC----------------CC--GTT-----------------------------TGC------------...................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GTCCTGGACTGAGCACAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ACAGCGAGTCCTGGACTGAGCACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.....................CACAGCGAGTCCTGGACTGAGCACAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGCGAGTCCTGGACTGAGCACAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...............................CCTGGACTGAGCACAGCGGGTGAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
......................ACAGCGAGTCCTGGACTGAGCACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................GTCCTGGACTGAGCACAGCGGGTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAAT.........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TCCTGGACTGAGCACAGCGGGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATCGTTGATGTGGCCAAGTTCACAGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CACAGCGAGTCCTGGACTGAGCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................TCCTGGACTGAGCACAGCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CACAGCGAGTCCTGGACTGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGGATTATA-----TACACAATACACCTATATAG--ATGTATACACTCCAC-T------TTTATT----T-TT--GACG--------G-CACAATGAGA----------------------------------------------------------CGACCTTGTTCGATTTGG---CCC--C----GGGTTACC--G--------------ATTCCTGACTCC-------------------------TCCAG---------------AGCG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC----------------CC--GTT-----------------------------AGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAG---CCTGAATCAGGACATGGACACGAACCCGGAC------GTGG---------------------A----------------------------------------------------TGTGAATGTGGATGTGGACGAG----------------GAGCA---GC--------------CATCCGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................AGTTCACAGCGAGTCCTGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
.............................GTCCTGGACTGAGCACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
.....................CACAGCGAGTCCTGGACTGAGCACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
........................AGCGAGTCCTGGACTGAGCACAGCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.......................CAGCGAGTCCTGGACTGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...............CAAGTTCACAGCGAGTCCTGGACTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
..................GTTCACAGCGAGTCCTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
droSec2
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGCATTATA-----TACACAATACACCTATATAG--ATGTATACACTCCAC-T------TTTATT----T-TT--GACG--------G-CACAATGAGA----------------------------------------------------------CGACCTTGTTCGATTTGG---TCC--C----GGGCTACC--G--------------ATTCCTGACTCC-------------------------TCAAG---------------AGCG--CTCTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTACCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC----------------CC--GTT-----------------------------AGC------------CATCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATGGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAG---CCTGAATCAGGACATGGACACGAAATTGGAC------GTGG---------------------A----------------------------------------------------TG------TGAATGTGGACGAG----------------GAGCA---GC--------------CATCCGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................GTTCACAGCGAGTCCTGGACTGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCAAGGGCG-CCAGGA.....................................................................................................................................................................................................1911.0010001
droYak3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CATGC-----CCCACAGGGCTGC--------CCCTTTGCCC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAG---CCTGAATCAGGACATGGACATGGA---------------------------------------CACG--------------------------------------G--------------------ATGTGGATGCG----------------GAGCA---GC--------------CATCCGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AATCGTTGATGTGGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGGTGAGCATTATA-----TACACAATACACCTATAT-----TGTATATACTCCAC-A------TTTATT----T-TT--GACG--------G-CACAATGAGACG-------------------------------------------------------ACGACCTTGTTCGATTTGG---CCC--C----TGGCTACC--G--------------ATGCCTGACTCC-------------------------TCCAC---------------AGCG--CTGTGTGAATAAATTATAATTAAGCTGCTC---AA--TTATTCAAAATTATGCCG---CTGCCA------------------------------------------------CAC-GT------------------GTAG---------------------------------------------CACGC-----CCC-CAGGGCTGC--------CCGTTTGCCC--GTT-----------------------------TGC------------CAGCCCAAGAC-----------------------------------------------------------------------------------------GCCAATTAAAAAGAAATTGCTCAAGTGCAAGGGCG-CCAGGAC---CTGAA---CCGGAATCAGGACACGGACACGGA---------------------------------------CACGGACACGGGCACGGGCACGGACCCGAGCGTGGACGCGGA----------TG------TGGATGCCGACGAG----------------GAGCA---GC--------------CATCCGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................GTCCTGGACTGAGCACAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCTCAAGTGCAAGGGCG-C..........................................................................................................................................................................................................2211.0010001000

Generated: 05/16/2015 at 09:22 PM