ID:

dvi_274

 Coordinate:

scaffold_10322:435624-435702 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-14.3 -14.3 -14.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTTTTTTTTTTTTAAATTAAACTGGTCCTTTTAAATGGTAAATTTTAAATAGTCCTATGCTTTTACAAAGTAATTTAATGAATGACAGTTATCATTTGTTGATAATACGTAAGTACAGTTGCTTTTATAAAATCCAATCATTGAGGATTCTGTAAAAGTCAACCAAAACATACTACAA
***********************************.(((...((((((((.(((.((.((((..(((...(((..(((((((((((......)))))))))))...)))))))))).))..))).)).)))))))))......************************************ 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060675
140x9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060679
140x9_testes_total
 SRR060654
160x9_ovaries_total
 SRR060689
160x9_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060683
160_testes_total
 V116
male body		 V053
head
 M027
male body		 M061
embryo
 SRR060661
160x9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060678
9x140_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTA................................................... 25 0 1 107.00 107 13 29 20 23 9 11 0 0 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATA................................................. 27 0 1 29.00 29 6 6 8 1 7 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTAT.................................................. 26 0 1 29.00 29 8 8 7 2 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTTTT.................................................... 24 0 1 12.00 12 4 0 0 5 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGC........................................................ 20 0 1 12.00 12 3 3 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TAGTCCTATGCTTTTACAAAGTAATT....................................................................................................... 26 0 1 12.00 12 0 0 0 8 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................TTAAATGGTAAATTTTAAATAGTCCTA......................................................................................................................... 27 0 1 11.00 11 0 4 4 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TAAATGGTAAATTTTAAATAGTCCTATGC...................................................................................................................... 29 0 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATAA................................................ 28 0 1 7.00 7 1 2 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTT...................................................... 22 0 1 7.00 7 2 1 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTTT..................................................... 23 0 1 7.00 7 4 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATC................................................. 27 1 1 6.00 6 4 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATACT.... 27 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATAC..... 26 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCATTTGT............................................................................... 24 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TAAATGGTAAATTTTAAATAGTCC........................................................................................................................... 24 0 1 5.00 5 3 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TTAAATGGTAAATTTTAAATAGTCC........................................................................................................................... 25 0 1 4.00 4 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TAAATGGTAAATTTTAAATAGTCCTA......................................................................................................................... 26 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TAAGTACAGTTGCTTTTATAAAATCCAA......................................... 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AATACGTAAGTACAGTTGCTTTTA................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATACTAC.. 29 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCATTTGTTG............................................................................. 26 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACA........ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCATTTGTTC............................................................................. 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCATTTGTT.............................................................................. 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AAATGGTAAATTTTAAATAGTCCTATGC...................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TAAATGGTAAATTTTAAATAGTCCTATG....................................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATA...... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AAATAGTCCTATGCTTTTACAAAGTAA......................................................................................................... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AAATGGTAAATTTTAAATAGTCCTA......................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TCATTGAGGATTCTGTAAAAGTCAAC............... 26 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TGATAATACGTAAGTACAGTTGCTT...................................................... 25 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATAAA............................................... 29 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TTAAATGGTAAATTTTAAATAGTCCT.......................................................................................................................... 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACAT....... 24 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................TAGTCCTATGCTTTTACAAAGTAATC....................................................................................................... 26 1 1 2.00 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TCATTGAGGATTCTGTAAAAGTCAACCA............. 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCATTTGTTGACC.......................................................................... 29 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AATACGTAAGTACAGTTGCTTTTATA................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GGATTCTGTAAAAGTCAACCAAAACAT....... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TAAACTGGTCCTTTTAAATGGTAAATT...................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCAATCATTGAGGATTCTGTAAAAGT................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TAAATGGTAAAGTTTAAATAGTCCTA......................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TCTGTAAAAGTCAACCAAAACATACT.... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GATTCTGTAAAAGTCAACCAAAACA........ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GGATTCTGTAAAAGTCAACCAAAAC......... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TTAAATGGTAAATTTTAAATAGTC............................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCATTTGTCA............................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTAAAGTTGCTTTTA................................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AATACGTAAGTACAGTTGCTT...................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................AACTAATACGTAAGTACAGTTGCTTTTA................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AATGAATGACAGTTATCATTTGT............................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCATT.................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCATC.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTGTAAAAGTCAACCAAAACATACTACA. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AATGAATGACAGTTATCATTTGTT.............................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ATCATTGAGGATTCTGTAAAAGTCAAC............... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATACG.... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................AATAGTCCTATGCTTTTACAAAGTAATT....................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TTTTTTTAAATTAAACTGGTCC...................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAAAGTCAACCAAAACTTATTAGAA 25 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................TTTTACAAAGTAATTTAATGAATGACAGT......................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TAAGTACAGTTGCTTTTATAAAATCCA.......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTCCGTAAAAGTCAACCAAAACATA...... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................TTACAAGTAATTTAATGAATGACAGT......................................................................................... 26 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GAGGATTCTGTAAAAGTCAACCAAAACA........ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TAAATGGTAAATTTTAAATAGTCCT.......................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CACGTAAGTACAGTTGCTTTTATA................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTAATGAATGACAGTTATCATTTGT............................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AATACGTAAGTACAGTTGCTTTTAT.................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GTAAATTTTAAATAGTCCTATGCTTT................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ATACGTAAGTACAGTTGCTTTTAT.................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CAATCATTGAGGATTCTGTAAAAGT................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AAGTAATTTAATGAATGACAGTTATC..................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATT................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTCCC................................................. 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCA.................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGAACAGTTGCTTTTAT.................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TACGTAAGTACAGTTGCTTTTATAAAA.............................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCAT................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TTAAACTGGTCCTTTTAAATGGTAAA........................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCATTTGTTGA............................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TCTGTAAAAGTCAACCAAGACATACTACA. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CAATCATTGAGGATTCTGTAAAAGTCA................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TACGTAAGTACAGTTGCTTTTA................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATCC................................................ 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AATACGTAAGTACAGTTGCTTTT.................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTGATAATACGTAAGTACAGTTGCT....................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CAATACGTAAGTACAGTTGCTTTTA................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAATGAATGACAGTTATCATTTGTC.............................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................ATTCTGTAAAAGTCAACCAAAACA........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCT....................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATACTA... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TCTGTAAAAGTCAACCAAAACATACTACA. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TCATTGAGGATTCTGTAAAAGTC.................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TAGTCCTATGCTTTTACAAAGTAATTTA..................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AAATGGTAAATTTTAAATAGTCC........................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTAATGAATGACAGTTATCATTTGTTGA............................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAA.......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GATAATACGTAAGTACAGTTGCTT...................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TAGTCCTATGCTTTTACAAAGTAATTT...................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ATCATTGAGGATTCTGTAAAAGTCAACC.............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTGATAATACGTAAGTACAGTTGCTTT..................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GTAATACGTAAGTACAGTTGCTTTTA................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TAAATGGTAAATTTTAAATCGTCCTATGC...................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CCAATCATTGAGGATTCTGTAAAAGTCG................. 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................TCCTATGCTTTTACAAAGTAATT....................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GATTCTGTAAAAGTCAACCAAAACATAC..... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TAGTCCTATGCTCTTACAAAGTAATT....................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGCTTTCCC.................................................. 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TAGTCCTATGCTTTTACAAAGTAAT........................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TTTTAAATAGTCCTATGC...................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTAATACGTAAGTACAGTTGCTTTT.................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAAGTACAGTTGGTT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TAGTCCTATGCTTTTACAAAGGAAA........................................................................................................ 25 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAATACGTAGGTACAGTTGCTTTTATC................................................. 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCAATCATTGAGGATTCTGTAAAAGTC.................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TGAGGATTCTGTAAAAGTCAAC............... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AAACTGGTCCTTTTAAATGGT........................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTAATGAATGACAGTTATCATTTGTT.............................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGTTGCCTTTATAAAATGCA.......................................... 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................GTACAGTTGCTTTTATCC................................................ 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GATAATACGTAGGTCCCG............................................................ 18 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................CAAAAGTCAACCAAAACTTATT.... 22 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................ATGCGTTTACAAAGAAATT....................................................................................................... 19 2 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................CTGGTCGTTTTAAATCGTT.......................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAAAAAAAAAAAAATTTAATTTGACCAGGAAAATTTACCATTTAAAATTTATCAGGATACGAAAATGTTTCATTAAATTACTTACTGTCAATAGTAAACAACTATTATGCATTCATGTCAACGAAAATATTTTAGGTTAGTAACTCCTAAGACATTTTCAGTTGGTTTTGTATGATGTT
************************************.(((...((((((((.(((.((.((((..(((...(((..(((((((((((......)))))))))))...)))))))))).))..))).)).)))))))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060675
140x9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 SRR060688
160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060654
160x9_ovaries_total
 V047
embryo
 SRR060682
9x140_0-2h_embryos_total
 M061
embryo
 SRR060667
160_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
...............TTAATTTGACCAGGAAAATTTACCATT......................................................................................................................................... 27 0 1 27.00 27 26 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GTCAATAGTAAACAACTATTATGCATT.................................................................. 27 0 1 22.00 22 10 2 5 3 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................ACGAAAATGTTTCATTAAATTACTTACT............................................................................................. 28 0 1 21.00 21 20 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGTCAATAGTAAACAACTATTATGCATT.................................................................. 28 0 1 15.00 15 3 3 0 0 6 0 1 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................ATAGTAAACAACTATTATGCATT.................................................................. 23 0 1 14.00 14 12 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................GGTTAGTAACTCCTAAGACATTTT..................... 24 0 1 12.00 12 11 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CAATAGTAAACAACTATTATGCATT.................................................................. 25 0 1 11.00 11 7 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TAATTTGACCAGGAAAATTTACCATT......................................................................................................................................... 26 0 1 10.00 10 8 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................TCAATAGTAAACAACTATTATGCATT.................................................................. 26 0 1 10.00 10 5 2 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TTAATTTGACCAGGAAAATTTACCAT.......................................................................................................................................... 26 0 1 8.00 8 2 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GTTAGTAACTCCTAAGACATTTT..................... 23 0 1 8.00 8 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AATTTGACCAGGAAAATTTACCATT......................................................................................................................................... 25 0 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AATTTGACCAGGAAAATTTACCAT.......................................................................................................................................... 24 0 1 7.00 7 3 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TAGGTTAGTAACTCCTAAGACATTTT..................... 26 0 1 6.00 6 1 1 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGGTTAGTAACTCCTAAGACATTTT..................... 25 0 1 6.00 6 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................ACGAAAATGTTTCATTAAATTACTTAC.............................................................................................. 27 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TAGGTTAGTAACTCCTAAGA........................... 20 0 1 5.00 5 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTAGGTTAGTAACTCCTAAGACATTTT..................... 27 0 1 5.00 5 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................TAATTTGACCAGGAAAATTTACCAT.......................................................................................................................................... 25 0 1 4.00 4 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TTTGACCAGGAAAATTTACCATT......................................................................................................................................... 23 0 1 4.00 4 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TAGGTTAGTAACTCCTAAGACATTT...................... 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AAATGTTTCATTAAATTACTTACT............................................................................................. 24 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................CGAAAATGTTTCATTAAATTACTTACT............................................................................................. 27 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TTGACCAGGAAAATTTACCATT......................................................................................................................................... 22 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................AATAGTAAACAACTATTATGCATT.................................................................. 24 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GTAAACAACTATTATGCATT.................................................................. 20 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CAATAGTAAACAACTATTATGCAT................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TAGGTTAGTAACTCCTAAG............................ 19 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TTTAGGTTAGTAACTCCTAAGACATT....................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGACCAGGAAAATTTACCATT......................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TAGGTTAGTAACTCCTAAGACATT....................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GGTTAGTAACTCCTAAGACATTTTC.................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TTTAATTTGACCAGGAAAATTTACCATT......................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CCAATAGTAAACAACTATTATGCATT.................................................................. 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AAAATTTACCATTTAAAATTTATCAGGAT......................................................................................................................... 29 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................AAATTTGACCAGGAAAATTTACCATT......................................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTAGGTTAGTAACTCCTAAGACATT....................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CTAATTTGACCAGGAAAATTTACCAT.......................................................................................................................................... 26 1 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATAGTAAACAACTATTATGCAT................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................ATTTTGACCAGGAAAATTTACCAT.......................................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCAGGAAAATTTACCATT......................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TTTGACCAGGAAAATTTACCATTTAAA..................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGTCAATAGTCAACAACTATTATGCATT.................................................................. 28 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................TTTGACCAGGAAAATTTACCAT.......................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................TAATTTGACCAGGAAAATTTACCA........................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGGTTAGTAACTCCTAAGACATTT...................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GTCAATAGTAAACAACTATTATGCAT................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTAGTAACTCCTAAGACATTTTCAG.................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAGTAAACAACTATTATGCATT.................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CAATAGTAAACAACTATTATGCA.................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATAGTAAACAACTATTATGCATTC................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ACGAAAATATTTTAGGTTAGTAACTCC................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCAATAGTAAACAACTATTATGCAT................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATAGTAAACAACTATTATGCATTCA................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAAAATATTTTAGGTTAGTAACT.................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AAAAATTTGACCAGGAAAATTTACCATT......................................................................................................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGACCAGGAAAATTTACCAT.......................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGGTTAGTAACTCCTAAGACATT....................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AAGACATTTTCAGTTGGTTTT.......... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............CTTTAATTTGACCAGGAAAATTTACCATT......................................................................................................................................... 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CCAAGACACTTTTAGTTGGTTTT.......... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................AAAATGTTTCATTAAATTACTTAC.............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CTAGGTTAGTAACTCCTAAGACATTTTC.................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGTAAACAACTATTATGCATTCATGTCA........................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TAATTTGACCTGGAAAATTG............................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................GAGTAACTCCTAAGACATTTTCAGTT................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TTAATTTGACCTGGAAAAT................................................................................................................................................. 19 1 2 1.00 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0
..........................................................ACGAAAATGTTTCATTAAATTACT................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TTTAATTTGACCAGGAAAATTTACCAT.......................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............CTTAATTTGACCAGGAAAATTTACCATT......................................................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AATTTGACCAGGAAAATTTACCA........................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TAATAGTAAACAACTATTATGCATT.................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GACAAGGAAAATTTACCATT......................................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TTAATTTGACCAGGAAAATTT............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TAAGACATTTTCAGTTGGTT............ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CAGGTTAGTAACTCCTAAGACATTTTC.................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TTTTAGGTTAGTAACTCCTAAGACATT....................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGGTTAGTAACTCCTAAGACATTTTC.................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GACCAGGAAAATTTACCAT.......................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AATAGGTTAGTAACTCCTAAGACATTTT..................... 28 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCAATAGTAAACAACTATT......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............CTTAATTTGACCAGGAAAATTTACCAT.......................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CATGTCAACGAAAATATTTTAGGTT......................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................TCATGTCAACGAAAATATTTTAGGT.......................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................ATTTGACCAGGAAAATTTACCATT......................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................AAATTTGACCAGGAAAATTTACCAT.......................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGTCAATAGTAAACAGCTATTATGCAT................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GTACGAAAATGTTTCATTAAATTACTTAC.............................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............ATTTAATTTGACCAGGAAAATTTACCAT.......................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................AATTTATCAGGATACGAAAAT................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................TAGTAACTCCTAAGACATTTTCAGTT................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TAGGTTAGTAACTCCTAAGACAT........................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTACCATTTAAAATTTATCAGGATAC....................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................CGGAAATGTTTCATTAAATTACTTACT............................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TTGACCAGGAAAATTTACCATTT........................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ATCAATAGTAAACAACTATTATGCATT.................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GGTTGGTAACTCCTAAGACATTTTC.................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CAACGAAAATATTTTAGGTTAGTAACT.................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TTTAGGTTAGTAACTCCTAAGACAT........................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTAGGTTAGTAACTCCTAAGACATTT...................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGTAAACAACTATTATGCATT.................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TTAATTTGACCAGGAAAATT................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TATGCATTCATGTCAACGAAAATA.................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GCTAGTAAACAACTATTATGCATT.................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TACGAAAATGTTCCATTAAATTACTTACT............................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CTGTCAATAGTAAACAACTATTATGCATT.................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TTAATTTGACCAGGAAAAT................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CTAATTTGACCAGGAAAATTTACCATT......................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GTTAGTAACTCCTAAGACATTTTC.................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TTAATTTGACCAGGAAAATTTACCATTAA....................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TAGTAACTCCTAAGACATTTT..................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CTAAAATTTATCAGGATACGAAAATG................................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TTTATCAGGATACGAAAATGTTTC............................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................ACGAAAATGTTTCATTAAATTACTTA............................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CCTATTTTAGGTTAGTAACT.................................. 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TCCTAAGGCATGTACAGTT................ 19 3 20 0.20 4 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 1
.................AATTTGACCTGGAAAATTGC.............................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
AGAAAAAAAAAAAATTTACTTTG............................................................................................................................................................ 23 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_10322:435574-435752 - dvi_274 TTTTTTTTTTTTTTAAATTAAACTGGTCCTTTTAAATGGTAAATTTTAAATAGTCCTATGCTTTTACAAAGTAATTTAATGAATGACAGTTATCATTTGTTGATAATACGTAAGTACAGTTGCTTTTATAAAATCCAATCATTGAGGATTCTGTAAAAGTCAACCAAAACATACTACAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTTTTTTTTTTTTAAATTAAACTGGTCCTTTTAAATGGTAAATTTTAAATAGTCCTATGCTTTTACAAAGTAATTTAATGAATGACAGTTATCATTTGTTGATAATACGTAAGTACAGTTGCTTTTATAAAATCCAATCATTGAGGATTCTGTAAAAGTCAACCAAAACATACTACAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTA...................................................251107.0010700130110000000000000000000029001900012000023000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATA.................................................27129.0029006000000000000000000000060007000080001000000000000000000000010
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTAT..................................................26129.0029008000000000000000000000080003000170002000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCTTTT....................................................24112.0012004010000000010000000000000001000000005000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGC........................................................20112.0012003000000000000000000000030000000040002000000000000000000000000
..................................................TAGTCCTATGCTTTTACAAAGTAATT.......................................................................................................26112.0012000010000000020000000000000000000000008100000000000000000000000
...............................TTAAATGGTAAATTTTAAATAGTCCTA.........................................................................................................................27111.0011000000000000000000000000040003000040000000000000000000000000000
................................TAAATGGTAAATTTTAAATAGTCCTATGC......................................................................................................................2919.009009000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATAA................................................2817.007001000000000000000000000020002000020000000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCTT......................................................2217.007002020000000000000000000010000000000002000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCTTT.....................................................2317.007004000000000000000000000000000000000003000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATC.................................................2716.006004000000000000000000000000001000000001000000000000000000000000
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATACT....2715.005005000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATAC.....2615.005004000000000000000000000010000000000000000000000000000000000000
............................................................................TAATGAATGACAGTTATCATTTGT...............................................................................2415.005004000000000000000000000010000000000000000000000000000000000000
................................TAAATGGTAAATTTTAAATAGTCC...........................................................................................................................2415.005003000000000000000000000010001000000000000000000000000000000000
...............................TTAAATGGTAAATTTTAAATAGTCC...........................................................................................................................2514.004000000000000000000000000020001000010000000000000000000000000000
................................TAAATGGTAAATTTTAAATAGTCCTA.........................................................................................................................2614.004002000000000000000000000020000000000000000000000000000000000000
..............................................................................................................TAAGTACAGTTGCTTTTATAAAATCCAA.........................................2813.003003000000000000000000000000000000000000000000000000000000000000
........................................................................................................AATACGTAAGTACAGTTGCTTTTA...................................................2413.003003000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATACTAC..2913.003003000000000000000000000000000000000000000000000000000000000000
............................................................................TAATGAATGACAGTTATCATTTGTTG.............................................................................2613.003001000000000000000000000000000000020000000000000000000000000000
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACA........2312.002002000000000000000000000000000000000000000000000000000000000000
............................................................................TAATGAATGACAGTTATCATTTGTTC.............................................................................2612.002002000000000000000000000000000000000000000000000000000000000000
............................................................................TAATGAATGACAGTTATCATTTGTT..............................................................................2512.002001000000000000000000000000000000010000000000000000000000000000
.................................AAATGGTAAATTTTAAATAGTCCTATGC......................................................................................................................2812.002002000000000000000000000000000000000000000000000000000000000000
................................TAAATGGTAAATTTTAAATAGTCCTATG.......................................................................................................................2812.002001000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATA......2512.002002000000000000000000000000000000000000000000000000000000000000
...............................................AAATAGTCCTATGCTTTTACAAAGTAA.........................................................................................................2712.002001000000000000000000000000000000010000000000000000000000000000
.................................AAATGGTAAATTTTAAATAGTCCTA.........................................................................................................................2512.002002000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TCATTGAGGATTCTGTAAAAGTCAAC...............2612.002000000000000000000000000010000000000001000000000000000000000000
....................................................................................................TGATAATACGTAAGTACAGTTGCTT......................................................2512.002001000000000000000000000100000000000000000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATAAA...............................................2912.002001010000000000000000000000000000000000000000000000000000000000
...............................TTAAATGGTAAATTTTAAATAGTCCT..........................................................................................................................2612.002000000000000000000000000010000000010000000000000000000000000000
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACAT.......2412.002001000000000000000000000000000000000000000000000000000000000100
..................................................TAGTCCTATGCTTTTACAAAGTAATC.......................................................................................................2612.002000000000000000000000000000000000100000100000000000000000000000
..........................................................................................................................................TCATTGAGGATTCTGTAAAAGTCAACCA.............2812.002002000000000000000000000000000000000000000000000000000000000000
............................................................................TAATGAATGACAGTTATCATTTGTTGACC..........................................................................2912.002002000000000000000000000000000000000000000000000000000000000000
........................................................................................................AATACGTAAGTACAGTTGCTTTTATA.................................................2612.002002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GGATTCTGTAAAAGTCAACCAAAACAT.......2711.001001000000000000000000000000000000000000000000000000000000000000
..................TAAACTGGTCCTTTTAAATGGTAAATT......................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................TCCAATCATTGAGGATTCTGTAAAAGT...................2711.001000000000000000000000000000000000000000100000000000000000000000
.....................................................................................................................................................TCTGTAAAAGTCAACCAAAACATACT....2611.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GATTCTGTAAAAGTCAACCAAAACA........2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GGATTCTGTAAAAGTCAACCAAAAC.........2511.001001000000000000000000000000000000000000000000000000000000000000
...............................TTAAATGGTAAATTTTAAATAGTC............................................................................................................................2411.001000000000000000000000000010000000000000000000000000000000000000
............................................................................TAATGAATGACAGTTATCATTTGTCA.............................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................AATACGTAAGTACAGTTGCTT......................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................AATGAATGACAGTTATCATTTGT...............................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................TAATGAATGACAGTTATCATT..................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................TAATGAATGACAGTTATCATC..................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CTGTAAAAGTCAACCAAAACATACTACA.2811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................AATGAATGACAGTTATCATTTGTT..............................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................ATCATTGAGGATTCTGTAAAAGTCAAC...............2711.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATACG....2711.001001000000000000000000000000000000000000000000000000000000000000
................................................AATAGTCCTATGCTTTTACAAAGTAATT.......................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.......TTTTTTTAAATTAAACTGGTCC......................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................TTTTACAAAGTAATTTAATGAATGACAGT.........................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TAAGTACAGTTGCTTTTATAAAATCCA..........................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................GAGGATTCTGTAAAAGTCAACCAAAACA........2811.001001000000000000000000000000000000000000000000000000000000000000
................................TAAATGGTAAATTTTAAATAGTCCT..........................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................TTAATGAATGACAGTTATCATTTGT...............................................................................2511.001000000000000000000000000000000000000000100000000000000000000000
........................................................................................................AATACGTAAGTACAGTTGCTTTTAT..................................................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................GTAAATTTTAAATAGTCCTATGCTTT...................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATACGTAAGTACAGTTGCTTTTAT..................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................CAATCATTGAGGATTCTGTAAAAGT...................2511.001001000000000000000000000000000000000000000000000000000000000000
....................................................................AAGTAATTTAATGAATGACAGTTATC.....................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATT.................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTCCC.................................................2711.001001000000000000000000000000000000000000000000000000000000000000
............................................................................TAATGAATGACAGTTATCA....................................................................................1911.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................TACGTAAGTACAGTTGCTTTTATAAAA..............................................2711.001000000000000000000000000000000000010000000000000000000000000000
............................................................................TAATGAATGACAGTTATCAT...................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.................TTAAACTGGTCCTTTTAAATGGTAAA........................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
............................................................................TAATGAATGACAGTTATCATTTGTTGA............................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................CAATCATTGAGGATTCTGTAAAAGTCA.................2711.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TACGTAAGTACAGTTGCTTTTA...................................................2211.001000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCTTTTATCC................................................2811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................AATACGTAAGTACAGTTGCTTTT....................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTGATAATACGTAAGTACAGTTGCT.......................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................TAATGAATGACAGTTATCATTTGTC..............................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................ATTCTGTAAAAGTCAACCAAAACA........2411.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCT.......................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAACATACTA...2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TCTGTAAAAGTCAACCAAAACATACTACA.2911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TCATTGAGGATTCTGTAAAAGTC..................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................TAGTCCTATGCTTTTACAAAGTAATTTA.....................................................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
.................................AAATGGTAAATTTTAAATAGTCC...........................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................TTAATGAATGACAGTTATCATTTGTTGA............................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TTCTGTAAAAGTCAACCAAAA..........2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................GATAATACGTAAGTACAGTTGCTT......................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................TAGTCCTATGCTTTTACAAAGTAATTT......................................................................................................2711.001000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................ATCATTGAGGATTCTGTAAAAGTCAACC..............2811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTGATAATACGTAAGTACAGTTGCTTT.....................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................CCAATCATTGAGGATTCTGTAAAAGTCG.................2811.001100000000000000000000000000000000000000000000000000000000000000
.....................................................TCCTATGCTTTTACAAAGTAATT.......................................................................................................2311.001000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................GATTCTGTAAAAGTCAACCAAAACATAC.....2811.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TAATACGTAAGTACAGTTGCTTTCCC..................................................2611.001000000000000000000000000000000000000001000000000000000000000000
..................................................TAGTCCTATGCTTTTACAAAGTAAT........................................................................................................2511.001000000000000000000000000000000000000001000000000000000000000000
...........................................TTTTAAATAGTCCTATGC......................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TCCAATCATTGAGGATTCTGTAAAAGTC..................2811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TGAGGATTCTGTAAAAGTCAAC...............2211.001000010000000000000000000000000000000000000000000000000000000000
...................AAACTGGTCCTTTTAAATGGT...........................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
...........................................................................TTAATGAATGACAGTTATCATTTGTT..............................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GTACAGTTGCTTTTATCC................................................1890.111001000000000000000000000000000000000000000000000000000000000000

Generated: 05/15/2015 at 04:34 PM