ID:

dvi_271

 Coordinate:

scaffold_13049:8788981-8789049 +

 Confidence:

confident

 Class:

Mirtron

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.9 -10.8 -10.8

Flybase annnotation

utr3 [utr3_minus_4442]

No Repeatable elements found

Sense Strand Reads

GCGCTTTGGATCCTTTGGGTAATCGATCAAGTAACTTAAATATTAACTAGGTAAAATAATTGAAATCAAATTAACATGAAGCTGAAATTTGCTAATTTGATTCTTTTATTCCATTGCAGTTTATATGTGTAATTATTTGTATTTAAGCGTAATATGCACATAATACACA

**************************************************(((((((((..(((.((((((((.((.............)).)))))))))))..)))))...))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060676

9xArg_ovaries_total

 SRR2096013

Ovary_Strain_9_oxidized		 SRR060677

Argx9_ovaries_total

 SRR060678

9x140_testes_total

 SRR060681

Argx9_testes_total

 M047

female body

 SRR060674

9x140_ovaries_total

 SRR060675

140x9_ovaries_total

 SRR060686

Argx9_0-2h_embryos_total

 SRR2096014

Ovary_Strain_160_oxidized		 SRR060679

140x9_testes_total

 SRR060684

140x9_0-2h_embryos_total

 M061

embryo

 SRR2096055

Ovary_Min_43		 SRR2096059

Ovary_Min_164		 SRR060667

160_females_carcasses_total

 SRR060680

 9xArg_testes_total

 SRR2096056

Ovary_Min_46		 SRR060654

160x9_ovaries_total

 SRR060656

9x160_ovaries_total

 SRR2096057

Ovary_Min_50		 SRR060688

160_ovaries_total

 M028

head

 SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		 SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		 GSM1528803

follicle cells		 SRR060658

140_ovaries_total

 SRR060672

9x160_females_carcasses_total

 SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		 SRR2096058

Ovary_Min_98		 SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		 SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers		 V047

embryo

 M027

male body		 SRR060663

160_0-2h_embryos_total

 SRR060670

9_testes_total

 SRR060673

9_ovaries_total

 SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		 SRR2096060

Ovary_Min_193		 SRR060655

9x160_testes_total

 SRR060666

160_males_carcasses_total

 SRR060668

160x9_males_carcasses_total

 SRR060671

9x160_males_carcasses_total

 SRR060683

160_testes_total

 SRR060685

9xArg_0-2h_embryos_total

 SRR060689

160x9_testes_total

 SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		 SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		 V116

male body		 SRR060664

9_males_carcasses_total

 V053

head
..................................................GTAAAATAATTGAAATCAAATT................................................................................................. 22 0 1 66.00 66 6 0 3 6 9 12 4 0 1 1 2 2 4 0 0 5 5 0 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCAG.................................................. 25 0 1 62.00 62 7 0 3 3 2 4 1 1 2 1 2 0 0 11 4 0 0 5 0 1 3 0 0 3 2 0 0 0 0 0 1 2 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0
..................................................GTAAAATAATTGAAATCAAATTAA............................................................................................... 24 0 1 42.00 42 8 0 4 2 3 0 5 4 7 0 5 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAATTGAAATCAAATTA................................................................................................ 23 0 1 38.00 38 2 0 1 8 4 7 1 2 0 2 1 2 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........TCCTTTGGGTAATCGATCAAGTAACT..................................................................................................................................... 26 0 1 29.00 29 3 2 1 4 3 0 1 2 1 0 1 0 0 0 2 0 1 0 1 0 0 0 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAATTGAAATCAAATTAAA.............................................................................................. 25 1 1 19.00 19 4 1 4 0 0 0 1 2 2 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCAA.................................................. 25 1 1 15.00 15 2 0 1 0 0 0 0 1 5 0 0 2 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCA................................................... 24 0 1 15.00 15 1 0 3 0 1 0 0 0 0 2 1 0 1 1 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAATTGAAATCAAAT.................................................................................................. 21 0 1 13.00 13 1 0 1 1 4 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTG..................................................... 22 0 1 12.00 12 1 0 0 3 3 0 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TAATCGATCAAGTAACTTAAATATTAAC.......................................................................................................................... 28 0 1 12.00 12 0 10 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTTGATTCTTTTATTCCATTGCAG.................................................. 24 0 1 10.00 10 0 0 0 1 0 0 1 0 0 0 1 0 0 0 3 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................TTTGATTCTTTTATTCCATTGCAGT................................................. 25 0 1 10.00 10 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 1 0 1 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TGGGTAATCGATCAAGTAACTTAAATA............................................................................................................................... 27 0 1 10.00 10 4 0 2 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TTTGGATCCTTTGGGTAATCGATCAAG.......................................................................................................................................... 27 0 1 9.00 9 2 2 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TCCTTTGGGTAATCGATCAAGTAAC...................................................................................................................................... 25 0 1 8.00 8 2 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TGTAATTATTTGTATTTAAGCGTAATA............... 27 0 1 8.00 8 0 3 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATT...................................................... 21 0 1 7.00 7 0 0 0 3 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CTAATTTGATTCTTTTATTCCA........................................................ 22 0 1 7.00 7 0 0 1 0 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TGGGTAATCGATCAAGTAACTTAAATAT.............................................................................................................................. 28 0 1 6.00 6 2 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........ATCCTTTGGGTAATCGATCAATTAACT..................................................................................................................................... 27 1 1 6.00 6 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAATTGAAATCAAATTAAAA............................................................................................. 26 1 1 5.00 5 2 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGC.................................................... 23 0 1 5.00 5 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TGGATCCTTTGGGTAATCGATCAAGT......................................................................................................................................... 26 0 1 4.00 4 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCAGT................................................. 26 0 1 4.00 4 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGAAAATAATTGAAATCAAATTA................................................................................................ 23 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAATTGAAATCAA.................................................................................................... 19 0 1 4.00 4 0 0 0 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AATCGATCAAGTAACTTAAAT................................................................................................................................ 21 0 1 4.00 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TGTATTTAAGCGTAATATGCACATAA...... 26 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TAGTTTATATGTGTAATTATTTGTATT.......................... 27 1 1 3.00 3 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........ATCCTTTGGGTAATCGATCAAGTAAC...................................................................................................................................... 26 0 1 3.00 3 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ACATGAAGCTGAAATTTGCTA........................................................................... 21 0 1 3.00 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAATTTGATTCTTTTATTCCAT....................................................... 22 0 1 3.00 3 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTATTTGTATTTAAGCGTAATATGCACA......... 28 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TAACATGAAGCTGAAATTTGCTAATT........................................................................ 26 0 1 3.00 3 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TCAAGTAACTTAAATATTAACTAGTTTA................................................................................................................... 28 2 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TATTTGTATTTAAGCGTAATATGCACA......... 27 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCCC.................................................. 25 2 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TTGTGTAATCGATCAAGTAACTTAAATA............................................................................................................................... 28 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAATTGAAATCAAA................................................................................................... 20 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ATTTAAGCGTAATATGCACATAATACA.. 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTGTATTTAAGCGTAATATGCACATA....... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TGGGTAATCGATCAATTAACT..................................................................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAATTTGATTCTTTTATTCCA........................................................ 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAATTGAAATCAAATTT................................................................................................ 23 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTGTATTTAAGCGTAATATGCACATAA...... 28 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAAATAATTGAAATCAAATT................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TGGATCCTTTGGGTAATCGATCAAGTAAC...................................................................................................................................... 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTCTTTTATTCCATTGCAGTTTATATG.......................................... 27 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TGGATCCTTTGGGTAATCGATCAAG.......................................................................................................................................... 25 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TCCTTTGGGTAATCGATCAAGTAACTT.................................................................................................................................... 27 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAATTTGATTCTTTTATTCCATT...................................................... 23 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TATGTGTAATTATTTGTATTTAAGCGT................... 27 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TTGGGTAATCGATCAAGTAACTTAAATA............................................................................................................................... 28 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GCTTTGGATCCTTTGGGTAATCGAT.............................................................................................................................................. 25 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TAATCGATCAAGTAACTTAAATAT.............................................................................................................................. 24 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCAT....................................................... 20 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TTGGATCCTTTGGGTAATCGATCAAGT......................................................................................................................................... 27 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................AAATTAACATGAAGCTGAAATTTGC............................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTAACATGAAGCTGAAATTTGCTAATT........................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTTCA................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTTGATTCTTTTATTCCATTGCAGA................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATTTGTATTTAAGCGTAATATG............. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGAAA.................................................. 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TGGGTAATCGATCAATTAACTTAAATAT.............................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATCCCATTGC.................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CTTTGATTCTTTTATTCCATTGCAGTAAA.............................................. 29 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TATCCCATGGCAGTTTATATGTGTAA..................................... 26 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCAGTAAA.............................................. 29 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAAGCGTAATATGCACATA....... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TCCATTGCAGTTTATATGTGTAATTAT................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTCTTATTCCATTGCAGT................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAAATAATTGAAATCAAATT................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AATTATTTGTATTTAAGCGTAATAT.............. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGATTCTTTTATCCCATTGCAGTTC............................................... 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ACTTGATTCTTTTATTCCATTGCAG.................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGAAAATAATTGAAATCAAATT................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TGGGTAATCGATCAAGTAAC...................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TTAAATATTAACTAGGTAAAATAAT............................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TCAAGTAACTTAAATATTAACTAGTTT.................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATGATTGAAATCAAATTAA............................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........ATCCTTTGGGTAATCGATCAAGTAACT..................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCAGA................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CTAATTTGATTCTTTTATTCCAT....................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAATAGAAATCAAATTAA............................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TTATATGTGTAATTATTTGT............................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTTCAG.................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TTGGGTAATCGATCAAGT......................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTAAGCGTAATATGCACATAATACA.. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TCCTCTGGGTAATAGATCAAGTAACT..................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................TAGTTTATATTTGTAATTATTTGTATT.......................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAATTGAAATCAAATTAAC.............................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCTGTAATTATTTGTATTTAAGCGTAATA............... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTGTATTTAAGAGTAATATGCACATAA...... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATCCCATTGCAA.................................................. 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAAATAATTGGAATCAAATTA................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TATTTGTATTTAAGCGTAATATGCA........... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TTTGGATCCTTTGGGTCATC................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TTTGGGTAATCGATCAAGTAACTTA................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTTTTTTATTCCATT...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGTGTAATTATTTGTATTTAAGCGTAA................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GTAATTATTTGTATTTAAGCGTAATATG............. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTTAAATAATTGAAATCAAATT................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTTGATTCTTTTATTCCATTGC.................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCCG.................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CTTTGATTCTTTTATTCCATTGCAG.................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................TTATATGTGTAATTATTTGTATTTAAGC..................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TTGGATCCTTTGGGTAATCGATCAAG.......................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AATCGATCAAGTAACTTAA.................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAATTTGATTCTTTTATTCCATTGCAGT................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTAAGCGTAATATGCACATAATACAC. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TCCTTTGGGTAATCGATCAAG.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TATGTGTAATTATTTGTATTTAAGCGTA.................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TACTTTATATGTGTAATTATTTGTA............................ 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........CCTTTGGGTAATCGATCAAGTAACT..................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAAGCGTAATATGCACATAA...... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGCTAATTTGATTCTTTTATTCCATTGC.................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAAATAATTGAAATCAAATTAA............................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCATT................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TTCGATCCTTTGGGTAATCGATCAAG.......................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CCCATTGCAGTTTATATGTGTAATTAA................................. 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCAGTA................................................ 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAGTTGAAATCAAATTAAA.............................................................................................. 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTCTATTCCATTGCA................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TAGCTTATATGTGTAATTATTTGTATT.......................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TAATCGATCAAGTAACTTAAATATTAACT......................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAATTGAAATCAGATTAA............................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTTATATCTGTAATTATTTGTATTTAAG...................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TATATGTGTAATTATTTGTATTTAAGCGT................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GTAATTATTTGTATTTAAGC..................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GGGTAATCGATCAAGTAACTTAAATAT.............................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCT................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................TTCTTTTATCCCATTGCAGTTTATATG.......................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTTGATTCTTTTATTCCATTGCAAA................................................. 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAATTTGATTCTTTTATTCC......................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATCCCATTG..................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGAAAATAATTGAAATCAAAT.................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TTTGGATCCTTTGGGTAAT.................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TAATCGATCAAGTAACTTAAATATTA............................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TATGTGTAATTATTTGTATTTAAGCGTAA................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GCGCTTTGGATCCTTTGGGTAATCGA............................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTAACATGAAGCTGAAATTTGCTA........................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TCGATCAAGTAACTTAAATATTAACT......................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCCA.................................................. 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTTGATTCTTTTATTCCATTGCA................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TGGATCCTTTGGGTAATCGATCAAGTA........................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TGTATTTAAGCGTAATATTCACATAA...... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TCCTTTGGGTAATCGATCAATTAACT..................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAATTATTTGTATTTAAGCGTAATAT.............. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTTGATTCTTTTATTCCATTGCAGTAAA.............................................. 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CTTTGATTCTTTTATTCCATTG..................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTAAGCGTAATATGCACATAATACA.. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTGATTCTTTTATTCCATTGCAGTCC............................................... 28 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AATTATTTGTATTTAAGCGTAATATG............. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAATAATTGAAATCAAATTAAAAA............................................................................................ 27 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TAAATATTAACTAGCTAAA.................................................................................................................. 19 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................TGGATCTAAGCGTATTATGC............ 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................TAATTTGAATCTTTTATT........................................................... 18 1 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CGGGTCATCGATCATGTAA....................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................GGGTAATCGATGATGTAGC...................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............AGGGTAATCGATCAGGTG........................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGCGAAACCTAGGAAACCCATTAGCTAGTTCATTGAATTTATAATTGATCCATTTTATTAACTTTAGTTTAATTGTACTTCGACTTTAAACGATTAAACTAAGAAAATAAGGTAACGTCAAATATACACATTAATAAACATAAATTCGCATTATACGTGTATTATGTGT

**************************************************(((((((((..(((.((((((((.((.............)).)))))))))))..)))))...))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR2096013

Ovary_Strain_9_oxidized		 SRR060687

9_0-2h_embryos_total

 SRR060686

Argx9_0-2h_embryos_total

 SRR1106728

larvae
......................................................................................................................CAAATATACTTATTAATGAACAT............................ 23 3 1 1.00 1 1 0 0 0
.....................................................................................................................TCAAATATACTTATTAATGAACAT............................ 24 3 1 1.00 1 1 0 0 0
...........GGAAACCATTTAGCTGGTTC.......................................................................................................................................... 20 3 9 0.11 1 0 1 0 0
..........................................................................................................TTAAGGTAACATCAAATA............................................. 18 2 20 0.05 1 0 0 0 1
.....................TAGCTAGTTTACTGGATTTA................................................................................................................................ 20 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droVir3 scaffold_13049:8788931-8789100 + dvi_271 confident GCG--CT-----TTGGA--TCC---TTTGGGTAATCG---------AT-C-AAGTAA---CTTAAATATTAACTAGGTAAAATAAT-TGAAATC-AA-ATTAA--------------CATGAAGCTGAAATTTGCTAATTTGA---TTCTTT--T-ATTC--CATTGCAGTTTATATGTGTAATTATTTGTAT---TTAAGCGTAATATGCACATAATACACA-C
droMoj3 scaffold_6680:6551704-6551870 - GTG--CT-----TCGGA--TTC---TTTGA---TTGG---------TTGACATCTAA---AATATTTACTAGGTAAGTTTGA-----ATA---T-TA-ATTAAAGTATACTCA--AAAC------AGTT----GCTAATCACGTGTTTC--T----CTTCTTCATTGCAGTTTAAATATCTAATTGGTAATGC---TTAGACGTAGAATGCACATTAATACACAC
droGri2 scaffold_15110:4541349-4541513 + GCG--CC-----TTTGGGAGTC--CTTTGGGTTTCTG---------TCTT-AAATTT---TTTAAATACTAGGTAAATATTA-----AAACT-TGAA-TCGAT---ATT-ATT--TAAT------GTAC----GCTAACTTATTGCTTC--T--C-TGTC--TATTGCAGTTTAAATATGTAGTTGGTAATACTACTT-------AGCCATTAATAATA-CACAA
dp5 XR_group8:4405623-4405760 + ACA--TA-----TTCGA--TTG---ATTGGCGATTCATAAATATAAATCT-AAATAT---TTCATACCTTAGGTAAGTTGTT-----TAATTAT-GGACTTGA-------GCT--GGAG------CAAA----ACTAATTCTGGGACTC-----T-CTTC--TCTTGCAGTTTTTAATTCACA--------ACA------------------------------A
droPer2 scaffold_29:640048-640185 + ACA--TA-----TTCGA--TTG---ATTGGCGATTCATAAACATAAATCT-AAATAT---TTTATACCTTAGGTAAGTTGTT-----TAATTAT-GGACTTGA-------GCT--GGAG------CAAA----ACTAATTCTGGGACTC-----T-CTTC--TCTTGCAGTTTTTAATTCACA--------AAA------------------------------A
droAna3 scaffold_13337:11793798-11793934 - ACTTAAA-----CTGGG--GTA---TGTTGCGTTTTA---------TTTT-ACATAAAAAAATATACATTAGGTAAGTTGTA-----CGAAAAA-TTATATTT-------TTT-AAAAG------TAAA----ACTAATTGAA--------A--T-CTTC--AATTTCAGCTTGTAAAAATCC--------ATTA---------TGATT-------------T-C
droBip1 scf7180000396589:2186188-2186332 + ACTTAAC-----TTGGG--GTA---TGTTGCGTTTTA---------TTTT-ACACAAA-ATATATACTTTAGGTAAGTTCTT-----CGAAAAC-CCTTATTT-------CTTTAAAAC------ACAA----ACTTATGGAT--------T--T-CTTC--TCTTTCAGCTTTTAAGAATCC--------ATTA---------TGATTT--CATCGA---AC-A
droKik1 scf7180000302383:196159-196296 - TCG--CTTATTTTTGGG--GTA---TGTGGCTATTAT---------TTTA--AC------ATCATACATTTGGTAAGTTTGT---TTAAACA-A-TAAATTAA-------ATT--ATAT------AGAG----ACTAATTTAT--------T--TATCTT--CTTTACAGATTTTACATCTA-------------------------ATGCACATTAAATCAC--
droFic1 scf7180000453052:409196-409339 + TTG--CG-----TTGGG--GTA---TGTGGCGTTTGA---------TTTT-ACTTTA---ACCTTACATTAGGTAAGTTGTT-----TATTGAA-AATAGCAT-------AAT--ATGT------TTTA----ACTAATTAAA---CT---GT-T-TTTT--CCTTACAGTCTGTACGTCTGC--------ATT-----------AACTGCACATTT-ATCAC-C
droEle1 scf7180000491249:1024820-1024960 - AC----G-----TTGGG--GTA---TGTGGCGTATAA---------TTTA-AAATAA---ATCATACATTAGGTAAGTTGTT-----ATATTATAAA-TCAGA---A---ATA--TAAA------TGAA----ACTTATACCA---CTC--T--C-TTTC--TCTTACAGTTTGTACATCTAT--------ACT-----------AATTGCACATTTAATC----
droRho1 scf7180000780101:100056-100201 + CTTT-CG-----TTGGG--GTA---TGTGGCGTTTAA---------TTTT-AATTAA---ATCATTCATTGGGTAAGTTTCA-----TATTAAA-TAAACCGA-------TTT--AAAG------TAAA----ACTAATTTAAA--AT---G--T-TTTC--TTTTACAGTTAGTACATCTAT--------ACT-----------AAATGCACATTAAATCAC-C
droBia1 scf7180000300910:922109-922256 - AT----G-----TTGGG--GTA---TGTGGCGCATAA---------TTTA-AAACAA---ATCATACATTAGGTAAGTTGAT-----CATCAAA-ACTCCCGC-------ATT--AAAT------TAAA----ACTAATTCAAAC------GTTC-TTTC--TCTTACAGTCTGTACATCTAT--------ACCAA-------CTAATTGCACATTAAATCAC-C
droTak1 scf7180000415111:300071-300223 + TTA--CG-----TTGGG--GTA---TGTGGCGCTTAA---------TTTAAAAATAA---ATCATACATTAGGTAAGTAGTT-----GATTAAA-ACCCTCGC-------ATT--AAAT------TGAA----ACTAATTAAAATCTTC--T--C-TTTC--CCTTACAGTTTGTACATCTCT--------ACTAA-------CTAATTGCACATTAAATCAC-C
droEug1 scf7180000409184:860737-860876 - CTTT-CG-----TTGCG--GTA---TGTGGCGTTTAT---------TTTA-AAATTA---AACATGCATTAGGTAAGTTTAA-----AAAGATG-AAACATGC-------TTT--ATGT------CGAT----ACTAATTAA--------------TTTC--TCTTACAGTTTGTACGTCTAC--------ATT-----------AATTTCACATTGAATCAC-C
dm3 chr3L:826851-826993 - AC----G-----TTGGG--GTATGTTGTGGCGCTTAA---------TTCT-AACTAA---ATTATACACTAGGTAAGTGATT-----AAACAAA-CAGTGCGC-------TTT--GAAT------TGAA----ACTAATTCAC--------A--A-TTTC--CTTTGCAGATCGTACATCTAT--------ACT-----------AACTGCACATTAAATCAC-C
droSec2 scaffold_2:854697-854843 - CTTT-CG-----TTGGG--GTA---TGTGCCGCTTAA---------TTCT-AACTAA---ATTATACACTAGGTAAGTGATT-----AAACAAA-CAGTGCGC-------TTT--GAAT------TGAG----ACTAATTCAC--------G--T-TTTC--CTTTGCAGATCGTACATCTAT--------ACTAA-------CTAACTGCACATTAAATCAC-C
droYak3 3L:822540-822682 - TCA--CG-----TTGGG--GTA---TGTGGCGCTTAA---------TTTT-AACTAA---ATTATACATTAGGTGAGTTTCT---TAAAACA-A-GAGTACAT-------TTT--AAAT------GGTA----GCTAACTTGC--------G--T-TTTC--CTTTGCAGATCGTACATCTAT--------ACT-----------AACTGCACATTGAATCAC-C
droEre2 scaffold_4784:842419-842557 - GCA--CG-----TTGGG--GTA---TGTGGCGCTTAG---------TTGT--ACTAA---ATTATACATTAGGTGAGTTGTT-----AGACAAA-GG-TACAC--------TT--AAAT------TGAA----GCTAACTTGC--------G--T-TTTC--CTTTGCAGATCGTACATCTAT--------ACT-----------AACTGCACATTAAATCAC-C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCG--CT-----TTGGA--TCC---TTTGGGTAATCG---------AT-C-AAGTAA---CTTAAATATTAACTAGGTAAAATAAT-TGAAATC-AA-ATTAA--------------CATGAAGCTGAAATTTGCTAATTTGA---TTCTTT--T-ATTC--CATTGCAGTTTATATGTGTAATTATTTGTAT---TTAAGCGTAATATGCACATAATACACA-CSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................GTAAAATAAT-TGAAATC-AA-ATT............................................................................................................................22166.006614124000000000000050000104063625900201000000000000000000000000000100000000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTGCAG.......................................................25162.006200400110000001000000000011733202000020010000000000000000000000001003115304010122
............................................................................GTAAAATAAT-TGAAATC-AA-ATTAA--------------............................................................................................................24142.00420001000000000000000000005484250300307000000000000000000000000000000000000000000
............................................................................GTAAAATAAT-TGAAATC-AA-ATTA...........................................................................................................................23138.00380072000000000000000000001221812401200000000000000000000000010000200002000000000
...................TCC---TTTGGGTAATCG---------AT-C-AAGTAA---CT...................................................................................................................................................................26129.00290000100000000000000000001231411300001000000000000000000000000002032100002000010
............................................................................GTAAAATAAT-TGAAATC-AA-ATTAA--------------A...........................................................................................................25119.00190000000000000000000000001244000000502000000000000000000000000001000000000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTGCAA.......................................................25115.00150000000000000100000000000121000000205010000000000000000000000000000100000010000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTGCA........................................................24115.00150001000000000100000000000013012100000000000000000000000000000020200010000000000
............................................................................GTAAAATAAT-TGAAATC-AA-AT.............................................................................................................................21113.00130000000000000000110000101111101400000000000000000000000000000000000000000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTG..........................................................22112.00120000000000000000000000001010320300100000000000000000000000000000100000000000000
...............................TAATCG---------AT-C-AAGTAA---CTTAAATATTAAC........................................................................................................................................................28112.001200000000000000000000000020000000000000000000000000000000000000010000000000000000
..........................................................................................................................................TTTGA---TTCTTT--T-ATTC--CATTGCAG.......................................................24110.00100100000000000000000000001000110000000000000000000000000000000100000000103000010
..........................................................................................................................................TTTGA---TTCTTT--T-ATTC--CATTGCAGT......................................................25110.00100000001020000000000000000000000000000020000000000000000000000000000011003000000
...........................TGGGTAATCG---------AT-C-AAGTAA---CTTAAATA.............................................................................................................................................................27110.00100000000000000000000000010342000000000000000000000000000000000000000000000000000
......T-----TTGGA--TCC---TTTGGGTAATCG---------AT-C-AAG...........................................................................................................................................................................2719.0090000101000000000000000001121000000000000000000000000000000000002000000000000000
...................TCC---TTTGGGTAATCG---------AT-C-AAGTAA---C....................................................................................................................................................................2518.0080010000000000000000020000020100100000000000000000000000000000001000000000000000
..................................................................................................................................................................................TGTAATTATTTGTAT---TTAAGCGTAATA.................2718.0080000100000000000000000001102000000000000000000000000000000000003000000000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATT...........................................................2117.0070000000000000000000000000000320200000000000000000000000000000000000000000000000
......................................................................................................................................CTAATTTGA---TTCTTT--T-ATTC--CA.............................................................2217.0070000000000000000010000000001000000000000000000000000000000000000400000000000010
...........................TGGGTAATCG---------AT-C-AAGTAA---CTTAAATAT............................................................................................................................................................2816.0060000000000000000000000001121000000000000000000000000000000000001000000000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTGC.........................................................2315.0050000000000000000010000000000100100000020000000000000000000000000000000000000000
.............TGGA--TCC---TTTGGGTAATCG---------AT-C-AAGT..........................................................................................................................................................................2614.0040000100000000000000000000000000000000000000000000000000000000000300000000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTGCAGT......................................................2614.0040000000000000000000000000100000000000000000000000000000000000000000000300000000
............................................................................GTAAAATAAT-TGAAATC-AA-...............................................................................................................................1914.0040000000000000000000000000000210000001000000000000000000000000000000000000000000
................................AATCG---------AT-C-AAGTAA---CTTAAAT..............................................................................................................................................................2114.0040010000000000000000000000000000000000000000000000000000000000000000000030000000
............................................................................................................................................................................................TGTAT---TTAAGCGTAATATGCACATAA........2613.0030000000000000000000000000003000000000000000000000000000000000000000000000000000
................A--TCC---TTTGGGTAATCG---------AT-C-AAGTAA---C....................................................................................................................................................................2613.0030000000000000000000000000000000000100000000000000000000000000000200000000000000
......................................................................................................A--------------CATGAAGCTGAAATTTGCTA........................................................................................2113.0030000001000000000000000000002000000000000000000000000000000000000000000000000000
.......................................................................................................................................TAATTTGA---TTCTTT--T-ATTC--CAT............................................................2213.0030000000000000000010000000000000100100000000000000000000000000000000000000000000
.......................................................................................................................................................................................TTATTTGTAT---TTAAGCGTAATATGCACA...........2813.0030000000000000000000000000021000000000000000000000000000000000000000000000000000
....................................................................................................TAA--------------CATGAAGCTGAAATTTGCTAATT.....................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000001200000000000000
........................................................................................................................................................................................TATTTGTAT---TTAAGCGTAATATGCACA...........2712.0020000100000000000000000000001000000000000000000000000000000000000000000000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTGCCC.......................................................2512.0022000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................GTAAAATAAT-TGAAATC-AA-A..............................................................................................................................2012.0020000000000000000000000000000010100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................AT---TTAAGCGTAATATGCACATAATACA....2712.0020000000000000000000000000010000000000000000000000000000000000001000000000000000
..........................................................................................................................................................................................TTTGTAT---TTAAGCGTAATATGCACATA.........2712.0020000000000000000000000000000000000000000000000000000000000000002000000000000000
.......................................................................................................................................TAATTTGA---TTCTTT--T-ATTC--CA.............................................................2112.0020000000000000000001000000010000000000000000000000000000000000000000000000000000
............................................................................GTAAAATAAT-TGAAATC-AA-ATTT...........................................................................................................................2312.0020000000000000000000000000000200000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TTTGTAT---TTAAGCGTAATATGCACATAA........2812.0020000000000000000000000000110000000000000000000000000000000000000000000000000000
.............................................................................TAAAATAAT-TGAAATC-AA-ATT............................................................................................................................2112.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGGA--TCC---TTTGGGTAATCG---------AT-C-AAGTAA---C....................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000002000000000000000
..................................................................................................................................................TTCTTT--T-ATTC--CATTGCAGTTTATATG...............................................2712.0020000000000000000000000000001000000000000000000000000000000000000000010000000000
.............TGGA--TCC---TTTGGGTAATCG---------AT-C-AAG...........................................................................................................................................................................2512.0020000000000000000000000001010000000000000000000000000000000000000000000000000000
...................TCC---TTTGGGTAATCG---------AT-C-AAGTAA---CTT..................................................................................................................................................................2712.0020010000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................TAATTTGA---TTCTTT--T-ATTC--CATT...........................................................2312.0020000000000000000010000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TATGTGTAATTATTTGTAT---TTAAGCGT.....................2712.0020000000000000000000000001000000000000000000000000000000000000001000000000000000
..........................TTGGGTAATCG---------AT-C-AAGTAA---CTTAAATA.............................................................................................................................................................2812.0020000000000000000000000000011000000000000000000000000000000000000000000000000000
..G--CT-----TTGGA--TCC---TTTGGGTAATCG---------AT-................................................................................................................................................................................2512.0020000001000000000000000000000000000000000000000000000000000000010000000000000000
...............................TAATCG---------AT-C-AAGTAA---CTTAAATAT............................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000200000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CAT............................................................2012.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
............TTGGA--TCC---TTTGGGTAATCG---------AT-C-AAGT..........................................................................................................................................................................2712.0020000000000000000000000000010000000000000000000000000000000000000100000000000000
...............................................................................................AA-ATTAA--------------CATGAAGCTGAAATTTGC..........................................................................................2511.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
...................................................................................................TTAA--------------CATGAAGCTGAAATTTGCTAATT.....................................................................................2711.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................................................................................................................................TTTGA---TTCTTT--T-ATTC--CATTGCAGA......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000100000000000000
.........................................................................................................................................................................................ATTTGTAT---TTAAGCGTAATATG...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................TAAGCGTAATATGCACATA.........1911.0010000100000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TC--CATTGCAGTTTATATGTGTAATTAT......................................2711.0010000000000000000000000001000000000000000000000000000000000000000000000000000000
..............................................................................AAAATAAT-TGAAATC-AA-ATT............................................................................................................................2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AATTATTTGTAT---TTAAGCGTAATAT................2511.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
...........................TGGGTAATCG---------AT-C-AAGTAA---C....................................................................................................................................................................2011.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................TTAAATATTAACTAGGTAAAATAAT-..........................................................................................................................................2511.0010000000000000000000000001000000000000000000000000000000000000000000000000000000
................A--TCC---TTTGGGTAATCG---------AT-C-AAGTAA---CT...................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTGCAGA......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................CTAATTTGA---TTCTTT--T-ATTC--CAT............................................................2311.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TTATATGTGTAATTATTTGT..................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TTGGGTAATCG---------AT-C-AAGT..........................................................................................................................................................................1811.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................T---TTAAGCGTAATATGCACATAATACA....2611.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
............................................................................GTAAAATAAT-TGAAATC-AA-ATTAA--------------C...........................................................................................................2511.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TATTTGTAT---TTAAGCGTAATATGCA.............2511.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................TTTGGGTAATCG---------AT-C-AAGTAA---CTTA.................................................................................................................................................................2511.0010000000000000000000000010000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TGTGTAATTATTTGTAT---TTAAGCGTAA...................2711.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................GTAATTATTTGTAT---TTAAGCGTAATATG...............2811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................................TTTGA---TTCTTT--T-ATTC--CATTGC.........................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TTATATGTGTAATTATTTGTAT---TTAAGC.......................2811.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
............TTGGA--TCC---TTTGGGTAATCG---------AT-C-AAG...........................................................................................................................................................................2611.0010000100000000000000000000000000000000000000000000000000000000000000000000000000
................................AATCG---------AT-C-AAGTAA---CTTAA................................................................................................................................................................1911.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................TAATTTGA---TTCTTT--T-ATTC--CATTGCAGT......................................................2811.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................T---TTAAGCGTAATATGCACATAATACAC...2711.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
...................TCC---TTTGGGTAATCG---------AT-C-AAG...........................................................................................................................................................................2111.0010000100000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TATGTGTAATTATTTGTAT---TTAAGCGTA....................2811.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
....................CC---TTTGGGTAATCG---------AT-C-AAGTAA---CT...................................................................................................................................................................2511.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TAAGCGTAATATGCACATAA........2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TGCTAATTTGA---TTCTTT--T-ATTC--CATTGC.........................................................2811.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
.............................................................................TAAAATAAT-TGAAATC-AA-ATTAA--------------............................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000100000000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTGCAGTA.....................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
...............................TAATCG---------AT-C-AAGTAA---CTTAAATATTAACT.......................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................TATATGTGTAATTATTTGTAT---TTAAGCGT.....................2911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................GTAATTATTTGTAT---TTAAGC.......................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................GGGTAATCG---------AT-C-AAGTAA---CTTAAATAT............................................................................................................................................................2711.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTGCT........................................................2411.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TTTGA---TTCTTT--T-ATTC--CATTGCAAA......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................................................................................................TAATTTGA---TTCTTT--T-ATTC--C..............................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......T-----TTGGA--TCC---TTTGGGTAAT..............................................................................................................................................................................................1911.0010000000000000000000000001000000000000000000000000000000000000000000000000000000
...............................TAATCG---------AT-C-AAGTAA---CTTAAATATTA..........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
..............................................................................................................................................................................TATGTGTAATTATTTGTAT---TTAAGCGTAA...................2911.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
GCG--CT-----TTGGA--TCC---TTTGGGTAATCG---------A..................................................................................................................................................................................2611.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................TTAA--------------CATGAAGCTGAAATTTGCTA........................................................................................2411.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
..................................TCG---------AT-C-AAGTAA---CTTAAATATTAACT.......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTGCCA.......................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................................TTTGA---TTCTTT--T-ATTC--CATTGCA........................................................2311.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
.............TGGA--TCC---TTTGGGTAATCG---------AT-C-AAGTA.........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
....................................................................................................................................................................................TAATTATTTGTAT---TTAAGCGTAATAT................2611.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
....................................................................................................................................................................................................TTAAGCGTAATATGCACATAATACA....2511.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
.........................................................................................................................................ATTTGA---TTCTTT--T-ATTC--CATTGCAGTCC....................................................2811.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AATTATTTGTAT---TTAAGCGTAATATG...............2611.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
droMoj3
GTG--CT-----TCGGA--TTC---TTTGA---TTGG---------TTGACATCTAA---AATATTTACTAGGTAAGTTTGA-----ATA---T-TA-ATTAAAGTATACTCA--AAAC------AGTT----GCTAATCACGTGTTTC--T----CTTCTTCATTGCAGTTTAAATATCTAATTGGTAATGC---TTAGACGTAGAATGCACATTAATACACACSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...............................................................................................................................................................................ATATCTAATTGGTAATGC---TTA..........................2111.001100000
............................GA---TTGG---------TTGACATCTAA---AAT..................................................................................................................................................................2011.001100000
......T-----TCGGA--TTC---TTTGA---TTGG---------TTGACATCTA.........................................................................................................................................................................2811.001100000
...................TTC---TTTGA---TTGG---------TTGACAT............................................................................................................................................................................1911.001000010
.....................C---TTTGA---TTGG---------TTGACATCTAA---A....................................................................................................................................................................2211.001100000
........................................................................................................................................AATCACGTGTTTC--T----CTTCTTCATTG..........................................................2511.001010000
..........................TTGA---TTGG---------TTGACATCTAG---.....................................................................................................................................................................1911.001000100
droGri2
GCG--CC-----TTTGGGAGTC--CTTTGGGTTTCTG---------TCTT-AAATTT---TTTAAATACTAGGTAAATATTA-----AAACT-TGAA-TCGAT---ATT-ATT--TAAT------GTAC----GCTAACTTATTGCTTC--T--C-TGTC--TATTGCAGTTTAAATATGTAGTTGGTAATACTACTT-------AGCCATTAATAATA-CACAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
dp5
ACA--TA-----TTCGA--TTG---ATTGGCGATTCATAAATATAAATCT-AAATAT---TTCATACCTTAGGTAAGTTGTT-----TAATTAT-GGACTTGA-------GCT--GGAG------CAAA----ACTAATTCTGGGACTC-----T-CTTC--TCTTGCAGTTTTTAATTCACA--------ACA------------------------------ASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..........................................................................................................................................TTCTGGGACTC-----T-CTTC--TCTTGCAG.......................................................2414.0040000000400
.............................................................................................................................................TGGGACTC-----T-CTTC--TCTTGCAG.......................................................2111.0010000000001
.........................................................................................................................................ATTCTGGGACTC-----T-CTTC--TCTTGCAG.......................................................2511.0010010000000
.......................................................................................................................................TAATTCTGGGACTC-----T-CTTC--TCTTG..........................................................2411.0010100000000
droPer2
ACA--TA-----TTCGA--TTG---ATTGGCGATTCATAAACATAAATCT-AAATAT---TTTATACCTTAGGTAAGTTGTT-----TAATTAT-GGACTTGA-------GCT--GGAG------CAAA----ACTAATTCTGGGACTC-----T-CTTC--TCTTGCAGTTTTTAATTCACA--------AAA------------------------------ASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
......A-----TTCGA--TTG---ATTGGCGATT..............................................................................................................................................................................................1918.008800000
..A--TA-----TTCGA--TTG---ATTGGCG.................................................................................................................................................................................................1813.003300000
..A--TA-----TTCGA--TTG---ATTGGCGATTCAT...........................................................................................................................................................................................2411.001100000
..A--TA-----TTCGA--TTG---ATTGGCGATTCATAAAC.......................................................................................................................................................................................2811.001100000
..A--TA-----TTCGA--TTG---ATTGGCGATT..............................................................................................................................................................................................2111.001100000
.................................................................................T-----TAATTAT-GGACTTGA-------GCT--GG............................................................................................................2111.001100000
.................................................................................T-----TAATTAT-GGACTTGA-------GCT--GGA...........................................................................................................2211.001100000
............TTCGA--TTG---ATTGGCGATT..............................................................................................................................................................................................1811.001100000
droAna3
ACTTAAA-----CTGGG--GTA---TGTTGCGTTTTA---------TTTT-ACATAAAAAAATATACATTAGGTAAGTTGTA-----CGAAAAA-TTATATTT-------TTT-AAAAG------TAAA----ACTAATTGAA--------A--T-CTTC--AATTTCAGCTTGTAAAAATCC--------ATTA---------TGATT-------------T-CSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...................GTA---TGTTGCGTTTTA---------TTT................................................................................................................................................................................1811.001010000
.....AA-----CTGGG--GTA---TGTTGCGTTT..............................................................................................................................................................................................2011.001100000
droBip1
ACTTAAC-----TTGGG--GTA---TGTTGCGTTTTA---------TTTT-ACACAAA-ATATATACTTTAGGTAAGTTCTT-----CGAAAAC-CCTTATTT-------CTTTAAAAC------ACAA----ACTTATGGAT--------T--T-CTTC--TCTTTCAGCTTTTAAGAATCC--------ATTA---------TGATTT--CATCGA---AC-ASizeHit CountTotal NormTotal
No Reads
droKik1
TCG--CTTATTTTTGGG--GTA---TGTGGCTATTAT---------TTTA--AC------ATCATACATTTGGTAAGTTTGT---TTAAACA-A-TAAATTAA-------ATT--ATAT------AGAG----ACTAATTTAT--------T--TATCTT--CTTTACAGATTTTACATCTA-------------------------ATGCACATTAAATCAC--SizeHit CountTotal NormTotal
No Reads
droFic1
TTG--CG-----TTGGG--GTA---TGTGGCGTTTGA---------TTTT-ACTTTA---ACCTTACATTAGGTAAGTTGTT-----TATTGAA-AATAGCAT-------AAT--ATGT------TTTA----ACTAATTAAA---CT---GT-T-TTTT--CCTTACAGTCTGTACGTCTGC--------ATT-----------AACTGCACATTT-ATCAC-CSizeHit CountTotal NormTotal
No Reads
droEle1
AC----G-----TTGGG--GTA---TGTGGCGTATAA---------TTTA-AAATAA---ATCATACATTAGGTAAGTTGTT-----ATATTATAAA-TCAGA---A---ATA--TAAA------TGAA----ACTTATACCA---CTC--T--C-TTTC--TCTTACAGTTTGTACATCTAT--------ACT-----------AATTGCACATTTAATC----SizeHit CountTotal NormTotal
No Reads
droRho1
CTTT-CG-----TTGGG--GTA---TGTGGCGTTTAA---------TTTT-AATTAA---ATCATTCATTGGGTAAGTTTCA-----TATTAAA-TAAACCGA-------TTT--AAAG------TAAA----ACTAATTTAAA--AT---G--T-TTTC--TTTTACAGTTAGTACATCTAT--------ACT-----------AAATGCACATTAAATCAC-CSizeHit CountTotal NormTotal
No Reads
droBia1
AT----G-----TTGGG--GTA---TGTGGCGCATAA---------TTTA-AAACAA---ATCATACATTAGGTAAGTTGAT-----CATCAAA-ACTCCCGC-------ATT--AAAT------TAAA----ACTAATTCAAAC------GTTC-TTTC--TCTTACAGTCTGTACATCTAT--------ACCAA-------CTAATTGCACATTAAATCAC-CSizeHit CountTotal NormTotal
No Reads
droTak1
TTA--CG-----TTGGG--GTA---TGTGGCGCTTAA---------TTTAAAAATAA---ATCATACATTAGGTAAGTAGTT-----GATTAAA-ACCCTCGC-------ATT--AAAT------TGAA----ACTAATTAAAATCTTC--T--C-TTTC--CCTTACAGTTTGTACATCTCT--------ACTAA-------CTAATTGCACATTAAATCAC-CSizeHit CountTotal NormTotal
No Reads
droEug1
CTTT-CG-----TTGCG--GTA---TGTGGCGTTTAT---------TTTA-AAATTA---AACATGCATTAGGTAAGTTTAA-----AAAGATG-AAACATGC-------TTT--ATGT------CGAT----ACTAATTAA--------------TTTC--TCTTACAGTTTGTACGTCTAC--------ATT-----------AATTTCACATTGAATCAC-CSizeHit CountTotal NormTotal
No Reads
dm3
AC----G-----TTGGG--GTATGTTGTGGCGCTTAA---------TTCT-AACTAA---ATTATACACTAGGTAAGTGATT-----AAACAAA-CAGTGCGC-------TTT--GAAT------TGAA----ACTAATTCAC--------A--A-TTTC--CTTTGCAGATCGTACATCTAT--------ACT-----------AACTGCACATTAAATCAC-CSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
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.....................................................................................................................................................................................AT--------ACT-----------AACTGCACATTAA.......1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATGTTGTGGCGCTTAA---------TTCT-AACTAA---A....................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCGCTTAA---------TTCT-AACTAA---ATT..................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............GGG--GTATGTTGTGGCGCTTAA---------TTCT-..............................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTGGG--GTATGTTGTGGCGCTTAA---------TA.................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GG--GTATGTTGTGGCGCTT..............................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TTAA---------TTCT-AACTAA---ATTATACACTAGG........................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TGTTGTGGCGCTTAA---------TTCT-AACTAA---AA...................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTTGTGGCGCTTAA---------TTCT-AACT..........................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................G--GTATGTTGTGGCGCTTAA---------TT.................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGTGGCGCTTAA---------TTCT-AACTAA---ATTT.................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................T-AACTAA---ATTATACACTAGA........................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCGTACATCTAT--------ACT-----------AACTGCAA............2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTGGG--GTATGTTGTGGCGCTTAA---------TTCT-..............................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CGTACATCTAT--------ACT-----------AACTGC..............2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................TTGTGGCGCTTAA---------TTCT-AACTAA---AA...................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GTGGCGCTTAA---------TTCT-AACTAA---.....................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................GTTGTGGCGCTTAA---------TTCT-AACTAA---A....................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CGTACATCTAT--------ACT-----------AACTGCACA...........2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TATGTTGTGGCGCTTAA---------TTCT-AAT...........................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGTGGCGCTTAA---------TTCT-AACT..........................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AT--------ACT-----------AACTGCACATTAAATCAC-A2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AC----G-----TTGGG--GTATGTTGTGGCGCTT..............................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.C----G-----TTGGG--GTATGTTGTGGCGCTTAA---------...................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......G-----TTGGG--GTATGTTGTGGCGCTT..............................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GGG--GTATGTTGTGGCGCTTAA---------TTCT-A.............................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................TTCT-AACTAA---ATTATACACTAGA........................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......G-----TTGGG--GTATGTTGTGGCGCTTAA---------TTC................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCGTACATCTAT--------ACT-----------AACTGCA.............2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GTGGCGCTTAA---------TTCT-AACTA.........................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TTAA---------TTCT-AACTAA---ATTA.................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GGG--GTATGTTGTGGCGCTTA.............................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................AGATCGTACATCTAT--------ACT-----------AACTGCACA...........2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TTCT-AACTAA---ATTATAC..............................................................................................................................................................1721.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
.............TGGG--GTATGTTGTGGCGCTTAA---------TTCT-AAC...........................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AT--------ACT-----------AACTGCACATTAAATC....2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.C----G-----TTGGG--GTATGTTGTGGCGCTT..............................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............TTGGG--GTATGTTGTGGCGCTTAA---------...................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTGTGGCGCTTAA---------TTCT-AACTAA---T....................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.C----G-----TTGGG--GTATGTTGTGGCGA................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TACATCTAT--------ACT-----------AACTGCACAC..........2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................CGCTTAA---------TTCT-AACTAA---ATTATACAC............................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGGCGCTTAA---------TTCT-AACTAA---AT...................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
............TTGGG--GTATGTTGTGGCGCTTAA---------T..................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................GTAAGTGATT-----AAACAAA-CAGTGCGC-------...................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................TTGTGGCGCTTAA---------TTCT-AACTAA---ATTG.................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TTC--CTTTGCAGATCGTACAT..............................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.C----G-----TTGGG--GTATGTTGTGGCGCT...............................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
....................................................................................................................................................................................TAT--------ACT-----------AACTGCACATTAAA......2011.001000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGGCGCTTAA---------TTCT-AACTAA---ATT..................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............TTGGG--GTATGTTGTGGCGCTTA.............................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................TCTAT--------ACT-----------AACTGCACATTAAA......2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TGAA----ACTAATTCAC--------A--A-TTTC--CTTTG..........................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TACATCTAT--------ACT-----------AACTGCACATTA........2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TGAA----ACTAATTCAC--------A--A-TTTC--CTTTGCAGATC....................................................3111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TTCAC--------A--A-TTTC--CTTTGCAG.......................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGGG--GTATGTTGTGGCGC................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................GTATGTTGTGGCGCTTA.............................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................ACTGCACATTAAATCAC-C1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCGTACATCTAT--------ACT-----------AACTGCACATTA........2711.001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AT--------ACT-----------AACTGCACATTAAATCAC-C2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................AAA-CAGTGCGC-------TTT--GAAT------TGA.................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GAA----ACTAATTCAC--------A--A-TTTC--CTTTGCA........................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TAA---------TTCT-AACTAA---ATTATACACTACA........................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCGTACATCTAT--------ACT-----------AACTGCACATTAA.......2811.001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TAT--------ACT-----------AACTGCACATTAA.......1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................CATCTAT--------ACT-----------AACTGCACATTAAATCAC-.2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTTAA---------TTCT-AACTAA---ATTATA...............................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TACATCTAT--------ACT-----------AACTGCACATTAAAA.....2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTGTGGCGCTTAA---------TTCT-AACTAA---ATT..................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGGG--GTATGTTGTGGCGCTTAA---------TT.................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AA---------TTCT-AACTAA---ATTATACACTAGA........................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSec2
CTTT-CG-----TTGGG--GTA---TGTGCCGCTTAA---------TTCT-AACTAA---ATTATACACTAGGTAAGTGATT-----AAACAAA-CAGTGCGC-------TTT--GAAT------TGAG----ACTAATTCAC--------G--T-TTTC--CTTTGCAGATCGTACATCTAT--------ACTAA-------CTAACTGCACATTAAATCAC-CSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................................................................................TCGTACATCTAT--------ACTAA-------CTAACTGCACA...........2811.0011000
..TT-CG-----TTGGG--GTA---TGTGCCGCTTAA---------TT.................................................................................................................................................................................2611.0010010
......G-----TTGGG--GTA---TGTGCCGCTTAA---------TTCT-..............................................................................................................................................................................2511.0010010
droYak3
TCA--CG-----TTGGG--GTA---TGTGGCGCTTAA---------TTTT-AACTAA---ATTATACATTAGGTGAGTTTCT---TAAAACA-A-GAGTACAT-------TTT--AAAT------GGTA----GCTAACTTGC--------G--T-TTTC--CTTTGCAGATCGTACATCTAT--------ACT-----------AACTGCACATTGAATCAC-CSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..A--CG-----TTGGG--GTA---TGTGGCGCTT..............................................................................................................................................................................................2111.00100100000000
...................................................................ATTAGGTGAGTTTCT---TAAAACA-A-GAGTAC............................................................................................................................2911.00100000010000
.....................................................................................................................................................................................AT--------ACT-----------AACTGCACATTGAATCAC-C2411.00100100000000
.CA--CG-----TTGGG--GTA---TGTGGCGCTT..............................................................................................................................................................................................2211.00100100000000
..................................................................................................................................................................................TCTAT--------ACT-----------AACTGCACATTGAATCAC-C2711.00100100000000
......G-----TTGGG--GTA---TGTGGCGCTT..............................................................................................................................................................................................1911.00100100000000
...............................................................................................................TT--AAAT------GGTA----GCTAACTTGC--------G--T-T....................................................................2311.00100000010000
droEre2
GCA--CG-----TTGGG--GTA---TGTGGCGCTTAG---------TTGT--ACTAA---ATTATACATTAGGTGAGTTGTT-----AGACAAA-GG-TACAC--------TT--AAAT------TGAA----GCTAACTTGC--------G--T-TTTC--CTTTGCAGATCGTACATCTAT--------ACT-----------AACTGCACATTAAATCAC-CSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................A---TGTGGCGCTTAG---------TTGT--AC...........................................................................................................................................................................1911.0010100000
........................................................................GTGAGTTGTT-----AGACAAA-GG-...............................................................................................................................1911.0010000010
..............GGG--GTA---TGTGGCGCTTAG---------TTGT--ACTA.........................................................................................................................................................................2611.0010000100
.....................................................................................................................................................................................AT--------ACT-----------AACTGCACATTAAATCAC-C2411.0010100000
...................GTA---TGTGGCGCTTAG---------TTGT--ACTAA---ATT..................................................................................................................................................................2711.0010000010
..................................................................................................................................................................................TCTAT--------ACT-----------AACTGCACATTAAATCAC-C2711.0010000001

Generated: 10/20/2015 at 07:17 PM