ID:

dvi_27

 Coordinate:

scaffold_12928:2858493-2858550 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intron [Dvir\GJ16839-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

GCATGGATAAACACACAAAGGCAGGCCGCATTGTTGGTGTGTGTGTGTGTTTGTGTGTGTAAAGGAGTGTGTGTGTGAATGAATACTCAACCTGAGCACACACAGGCACACGCACACACATAGCCACAGCTGCCGCCAAGTTGTTTTGTGTTGGCGTT

***********************************.((((((((((((((((((((((((..(((..((.((((........)))).)).)))..))))))))))))))))))))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V053

head

 SRR060659

Argentina_testes_total

 V116

male body		 SRR060678

9x140_testes_total

 SRR060681

Argx9_testes_total

 SRR060670

9_testes_total

 SRR060655

9x160_testes_total

 SRR060672

9x160_females_carcasses_total

 M047

female body

 SRR060679

140x9_testes_total

 SRR060657

140_testes_total

 SRR060680

 9xArg_testes_total

 SRR060664

9_males_carcasses_total

 SRR060689

160x9_testes_total

 SRR060667

160_females_carcasses_total

 M061

embryo

 SRR060665

9_females_carcasses_total

 SRR060668

160x9_males_carcasses_total

 M028

head

 SRR060671

9x160_males_carcasses_total

 SRR060683

160_testes_total

 V047

embryo

 SRR060669

160x9_females_carcasses_total

 SRR060666

160_males_carcasses_total

 SRR060658

140_ovaries_total

 SRR060660

Argentina_ovaries_total

 SRR060673

9_ovaries_total

 M027

male body		 SRR060656

9x160_ovaries_total

 SRR060676

9xArg_ovaries_total

 SRR060675

140x9_ovaries_total

 SRR060674

9x140_ovaries_total

 SRR060677

Argx9_ovaries_total

 SRR060654

160x9_ovaries_total

 SRR2096056

Ovary_Min_46		 SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		 SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		 SRR2096055

Ovary_Min_43		 SRR2096059

Ovary_Min_164		 SRR2096060

Ovary_Min_193		 SRR060687

9_0-2h_embryos_total

 SRR1106730

embryo_16-30h

 SRR2096057

Ovary_Min_50		 SRR1106729

mixed whole adult body

 SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		 SRR060688

160_ovaries_total

 SRR2096014

Ovary_Strain_160_oxidized		 SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		 SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers		 SRR060685

9xArg_0-2h_embryos_total

 SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		 SRR060662

9x160_0-2h_embryos_total

 SRR2096013

Ovary_Strain_9_oxidized		 SRR060686

Argx9_0-2h_embryos_total

 SRR060684

140x9_0-2h_embryos_total

 SRR1106727

larvae

 SRR2096058

Ovary_Min_98
..................................................TTGTGTGTGTAAAGGAGTGT........................................................................................ 20 0 1 3543.00 3543 376 675 360 265 270 196 238 43 129 144 154 151 6 112 3 1 4 0 93 3 68 2 0 3 16 18 33 20 20 11 11 7 7 8 13 11 7 6 9 9 4 0 5 2 7 4 2 4 3 2 3 2 0 1 1 0 1
..................................................TTGTGTGTGTAAAGGAGTGTGT...................................................................................... 22 0 1 1865.00 1865 588 103 283 55 73 30 42 70 62 18 10 32 84 24 84 27 53 39 17 24 15 17 22 31 12 18 4 4 3 7 0 4 3 2 2 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTG..................................................................................... 23 0 1 1772.00 1772 251 118 229 143 96 110 51 77 39 54 62 44 66 40 75 32 52 37 8 7 33 49 23 16 14 4 4 0 5 6 6 4 2 1 2 0 0 0 0 0 1 4 0 2 0 2 0 1 0 0 0 0 1 0 0 1 0
.....................................................................................CTCAACCTGAGCACACACAGGC................................................... 22 0 1 1340.00 1340 79 0 9 143 109 23 4 146 50 62 2 58 121 15 33 92 59 102 12 114 5 7 37 18 0 0 0 1 3 7 6 3 6 1 0 0 0 2 0 0 0 3 3 1 0 0 3 0 0 0 0 0 1 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTG....................................................................................... 21 0 1 876.00 876 131 103 110 44 41 30 30 20 35 26 66 27 34 29 31 1 16 10 7 3 10 16 4 13 10 6 1 3 4 1 3 2 4 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTG......................................................................................... 19 0 1 568.00 568 15 140 36 39 51 54 36 3 7 22 72 22 2 16 3 1 0 2 11 0 9 0 1 0 5 2 6 2 2 0 2 1 1 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTC....................................................................................... 21 1 1 142.00 142 0 27 13 11 13 18 30 0 1 4 0 7 0 10 0 0 0 0 0 0 6 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTTT...................................................................................... 22 1 1 137.00 137 2 50 8 20 7 13 6 1 1 9 10 3 0 4 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACACACAGGC................................................... 21 0 1 122.00 122 2 0 1 14 12 2 0 13 17 7 0 5 15 0 4 9 2 4 0 10 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTCT...................................................................................... 22 1 1 105.00 105 1 15 11 6 13 9 18 0 1 15 0 8 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGT.......................................................................................... 18 0 1 73.00 73 5 12 2 2 3 5 8 0 6 6 4 5 1 2 2 0 1 1 1 0 2 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTT....................................................................................... 21 1 1 62.00 62 2 18 4 3 7 2 6 1 1 3 5 2 1 3 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTTC...................................................................................... 22 2 1 57.00 57 0 23 4 4 8 6 5 0 1 1 0 1 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTCC...................................................................................... 22 2 1 56.00 56 0 7 3 1 4 9 15 0 0 1 0 1 0 9 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACAGG.................................................... 21 0 1 53.00 53 7 0 4 8 8 1 3 2 6 4 0 4 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACACACAGG.................................................... 20 0 1 43.00 43 4 1 1 7 7 4 1 3 5 2 0 4 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTTTT..................................................................................... 23 2 1 31.00 31 0 11 4 2 2 3 7 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGT.................................................................................... 24 0 1 28.00 28 7 0 7 2 0 1 0 1 0 1 0 1 0 0 2 0 3 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGA...................................................................................... 22 1 1 27.00 27 7 1 9 1 0 0 2 1 1 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGC........................................................................................ 20 1 1 25.00 25 2 1 1 0 1 0 1 1 0 0 2 1 0 0 0 1 0 0 12 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGA.................................................................................... 24 1 1 22.00 22 1 0 6 1 1 0 0 3 0 0 0 0 0 1 3 1 1 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGTG................................................................................... 25 0 1 21.00 21 7 0 3 0 1 2 2 0 0 0 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGG........................................................................................ 20 1 1 21.00 21 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTT..................................................................................... 23 1 1 20.00 20 4 1 3 0 1 0 0 2 0 1 0 0 0 0 0 0 1 0 0 0 0 5 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTC..................................................................................... 23 1 1 16.00 16 0 4 0 1 2 4 3 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CGCAACCTGAGCACACACAGGC................................................... 22 1 1 16.00 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACACACAG..................................................... 19 0 1 15.00 15 3 0 0 0 2 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTAA...................................................................................... 22 2 1 15.00 15 0 2 4 0 0 1 1 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTCT........................................................................................ 20 1 1 14.00 14 0 1 0 2 4 1 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTA....................................................................................... 21 1 1 14.00 14 0 1 5 0 1 0 0 0 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTC......................................................................................... 19 1 1 14.00 14 0 2 0 3 3 1 0 0 1 0 0 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGC...................................................................................... 22 1 1 14.00 14 2 1 0 0 0 2 1 0 0 0 0 0 0 0 0 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTAT...................................................................................... 22 1 1 13.00 13 1 2 3 0 0 1 1 0 3 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTTTG..................................................................................... 23 1 1 12.00 12 2 0 0 0 0 1 0 2 0 0 1 0 2 0 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACCCACAGGC................................................... 22 1 1 11.00 11 0 0 0 0 0 0 1 5 0 0 0 0 0 0 1 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTAAACCTGAGCACACACAGGC................................................... 22 1 1 10.00 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTCAACCTGAGCACACACAGGC................................................... 22 1 1 10.00 10 0 0 0 0 0 0 0 4 0 0 0 1 0 0 0 2 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGGGT........................................................................................ 20 1 1 10.00 10 3 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACAGGT................................................... 22 1 1 10.00 10 1 1 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGTGTGTAAAGGAGTGTGTG..................................................................................... 21 1 1 10.00 10 0 3 1 0 1 1 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTCC........................................................................................ 20 2 2 9.50 19 0 0 1 0 0 8 6 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTTT........................................................................................ 20 1 1 9.00 9 0 1 0 1 0 1 0 0 0 2 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTTA...................................................................................... 22 2 1 9.00 9 0 1 1 0 0 0 0 0 2 3 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTCA...................................................................................... 22 2 1 9.00 9 0 0 0 0 6 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGTGTGTGTAAAGGAGTGT........................................................................................ 19 0 1 9.00 9 0 1 2 0 0 0 0 0 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGTAGTGT........................................................................................ 20 1 1 8.00 8 2 0 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGGTGTGTAAAGGAGTGTGT...................................................................................... 22 1 1 7.00 7 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGCGTGTGTAAAGGAGTGT........................................................................................ 20 1 1 7.00 7 2 1 0 0 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCCCACACAGGC................................................... 22 1 1 7.00 7 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGTGTGTGTAAAGGAGTGTGT...................................................................................... 21 0 1 7.00 7 1 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTA......................................................................................... 19 1 1 7.00 7 0 1 0 1 2 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGTGTGTGTAAAGGAGTGT........................................................................................ 20 1 1 7.00 7 1 2 0 0 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTTTTT.................................................................................... 24 2 1 7.00 7 0 4 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGA........................................................................................ 20 1 3 6.33 19 0 2 9 0 1 0 0 0 1 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGAGTGTG..................................................................................... 23 1 1 6.00 6 1 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGAA..................................................................................... 23 2 1 6.00 6 0 0 1 0 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTTT.................................................................................... 24 1 1 6.00 6 1 0 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACAGGCA.................................................. 23 0 1 6.00 6 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGAGTGT...................................................................................... 22 1 1 6.00 6 0 0 3 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTA..................................................................................... 23 1 1 6.00 6 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTTTGTG..................................................................................... 23 1 1 6.00 6 2 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGTAGTGTGT...................................................................................... 22 1 1 6.00 6 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTCTT..................................................................................... 23 2 1 6.00 6 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGTGTGTAAAGGAGTGT........................................................................................ 18 1 3 5.33 16 0 8 0 0 0 0 3 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTCTC..................................................................................... 23 2 1 5.00 5 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGCAAAGGAGTGTGT...................................................................................... 22 1 1 5.00 5 2 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGGGTGTAAAGGAGTGT........................................................................................ 20 1 1 5.00 5 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGCAAAGGAGTGT........................................................................................ 20 1 1 5.00 5 2 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGCGTGTAAAGGAGTGT........................................................................................ 20 1 1 5.00 5 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACAG..................................................... 20 0 1 5.00 5 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACACACAGGCT.................................................. 22 1 1 5.00 5 0 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACAGAC................................................... 22 1 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTTTGTGTAAAGGAGTGT........................................................................................ 20 1 1 5.00 5 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTCTGTGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 5.00 5 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGTGTGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 5.00 5 0 1 0 0 0 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTCC.................................................................................... 24 2 1 5.00 5 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................ATCAACCTGAGCACACACAGGC................................................... 22 1 1 5.00 5 0 0 0 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AACCTGAGCACACACAGGC................................................... 19 0 1 5.00 5 0 1 0 0 0 0 0 0 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTTTC..................................................................................... 23 2 1 4.00 4 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AACCTGAGCACACACAGGCAC................................................. 21 0 1 4.00 4 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGTGTGTGTAAAGGAGTGTGTG..................................................................................... 22 0 1 4.00 4 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTTGTGTGTGTAAAGGAGTGT........................................................................................ 21 1 1 4.00 4 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGTAGTGTGTG..................................................................................... 23 1 1 4.00 4 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGAAGTGTG....................................................................................... 21 1 1 4.00 4 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGGGTG..................................................................................... 23 1 1 4.00 4 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTATG..................................................................................... 23 1 1 4.00 4 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAGAGGAGTGT........................................................................................ 20 1 1 4.00 4 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTTTT................................................................................... 25 2 1 4.00 4 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTTA.................................................................................... 24 2 1 4.00 4 1 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACGGGC................................................... 22 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTCTGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 4.00 4 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGCGTGT........................................................................................ 20 1 1 4.00 4 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGG...................................................................................... 22 1 1 4.00 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGGGTGTGTG..................................................................................... 23 1 1 4.00 4 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TGTTTGTGTGTGTAAAGGAGTGT........................................................................................ 23 0 1 4.00 4 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGTGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAGAGGAGTGTGT...................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGC.................................................................................... 24 1 1 4.00 4 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGCGTGT...................................................................................... 22 1 1 4.00 4 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTAT........................................................................................ 20 1 1 4.00 4 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTT......................................................................................... 19 1 2 3.50 7 0 1 0 1 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGCCC.................................................................................. 26 3 2 3.50 7 0 0 1 1 0 2 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTCTGTGTAAAGGAGTGT........................................................................................ 20 1 1 3.00 3 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACGGG.................................................... 21 1 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACAGGCT.................................................. 23 1 1 3.00 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGCGTGTAAAGGAGTGTGT...................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGCGTGTGT...................................................................................... 22 1 1 3.00 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTCTG..................................................................................... 23 1 1 3.00 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATGTGTGTGTAAAGGAGTGTGT...................................................................................... 22 1 1 3.00 3 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CAACCTGAGCACACACAGGC................................................... 20 0 1 3.00 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGAAGTGT........................................................................................ 20 1 1 3.00 3 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTTTGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 3.00 3 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTCTGTAAAGGAGTGT........................................................................................ 20 1 1 3.00 3 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGGTGTGTAAAGGAGTGT........................................................................................ 20 1 2 3.00 6 5 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TGTTTGTGTGTGTAAAGGAGT.......................................................................................... 21 0 1 3.00 3 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGCGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 3.00 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGCG..................................................................................... 23 1 1 3.00 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGTCC.................................................................................. 26 2 1 3.00 3 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTTTA..................................................................................... 23 2 1 3.00 3 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACCCACAGGC................................................... 21 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTCT.................................................................................... 24 1 1 3.00 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTGAAGGAGTGT........................................................................................ 20 1 1 3.00 3 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACAGGA................................................... 22 1 1 3.00 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGTGTGTAAAGGAGTGTGT...................................................................................... 22 1 1 3.00 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCACCCTGAGCACACACAGGC................................................... 22 1 1 3.00 3 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CCCAACCTGAGCACACACAGGC................................................... 22 1 1 3.00 3 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGATTGTGT...................................................................................... 22 1 1 3.00 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTTAACCTGAGCACACACAGGC................................................... 22 1 1 3.00 3 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGGTGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGCAGTGTGT...................................................................................... 22 1 1 3.00 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGGGTGTAAAGGAGTGTGT...................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACAGCC................................................... 22 1 1 3.00 3 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGGAAAGGAGTGTGT...................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGCGT........................................................................................ 20 1 1 3.00 3 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTTAAGGAGTGT........................................................................................ 20 1 1 3.00 3 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACAGTC................................................... 22 1 1 3.00 3 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTTTGTGTGTAAAGGAGTGT........................................................................................ 20 1 1 3.00 3 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGATT.......................................................................................... 18 1 1 3.00 3 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGCGTGTGTAAAGGAGTGTGT...................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGTGTGTAAAGGAGTGTGT...................................................................................... 20 1 2 2.50 5 0 1 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTAAA..................................................................................... 23 3 2 2.50 5 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................TTGTGTGTGTAAAGGATTGTTTG..................................................................................... 23 2 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGCG....................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGTA................................................................................... 25 1 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACACACAGGT................................................... 21 1 2 2.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCCACCTGAGCACACACAGGC................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACTCACAGGC................................................... 22 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTTGTGTGTGTAAAGGAGTGTGT...................................................................................... 23 1 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAACGGAGTGTG....................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAATCTGAGCACACACAGGC................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGCAGTGT........................................................................................ 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGTGTGTAAAGGAGTGTGTG..................................................................................... 20 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGGAAAGGAGTG......................................................................................... 19 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAACGGAGTGTGT...................................................................................... 22 1 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGGTGTGGAAAGGAGTGTGT...................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TTTGTGTGTGTAAAGGAGTGT........................................................................................ 21 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AACCTGAGCACACACAGGCACA................................................ 22 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTTTGTAAAGGAGTGT........................................................................................ 20 1 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGATCACACACAGGC................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACCGGC................................................... 22 1 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGGGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTTTTC.................................................................................. 26 3 1 2.00 2 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTACAGGAGTGT........................................................................................ 20 1 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAATGT........................................................................................ 20 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTTTGT...................................................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACACACAGGCA.................................................. 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGTC................................................................................... 25 1 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGCAAAGGAGTGTG....................................................................................... 21 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGTAGTGTG....................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTCTGTG..................................................................................... 23 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCATCCTGAGCACACACAGGC................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGTAGTG......................................................................................... 19 1 1 2.00 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTGAAGGAGTGTGTG..................................................................................... 23 1 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGATTGTGTG..................................................................................... 23 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACACACGGGC................................................... 21 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCTACCTGAGCACACACAGGC................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TGTTTGTGTGTGTAAAGGAG........................................................................................... 20 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGTGTGTAAAGGAGTGT........................................................................................ 18 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGCGTGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACACACGGG.................................................... 20 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTTTG....................................................................................... 21 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTCCC..................................................................................... 23 3 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGAA................................................................................... 25 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGCGTAAAGGAGTGTGTG..................................................................................... 23 1 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGCGTGTG..................................................................................... 23 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAATGTGT...................................................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TTAACCTGAGCACACACAGGC................................................... 21 1 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTCAAGGAGTGT........................................................................................ 20 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGAGT........................................................................................ 20 1 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGAGTGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGTGTGTGTAAAGGAGTGTGTGT.................................................................................... 23 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACCCAGGC................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGGGTGT...................................................................................... 22 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGGGTAAAGGAGTGTGTG..................................................................................... 23 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACACACGC................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGGAAAGGAGTGT........................................................................................ 20 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGAAAAGGAGTGT........................................................................................ 20 1 1 2.00 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACTTGAGCACACACAGGC................................................... 22 1 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGTGTGTAAAGGAGTGT........................................................................................ 20 1 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGCGTGTGTG..................................................................................... 23 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................GCCCTTGTGTGTGTAAAGGAGTGTGTG..................................................................................... 27 3 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAGCCTGAGCACACACAGGC................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGG.................................................................................... 24 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGGG..................................................................................... 23 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTCCC................................................................................... 25 3 2 2.00 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTATGTAAAGGAGTGTGTG..................................................................................... 23 1 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGA.......................................................................................... 18 1 2 1.50 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGCC................................................................................... 25 2 2 1.50 3 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGTGTGTGT...................................................................................... 22 1 2 1.50 3 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTTTT....................................................................................... 21 2 4 1.25 5 1 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAGGGAGTGT........................................................................................ 20 1 4 1.25 5 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGCAGTCTG....................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGTACACACAGGC................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGCG......................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGCACTGT........................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTCTTT.................................................................................... 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTATGTAAAGGAGTGTCT...................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTTC.................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTCTAAAGGAGTGTGTG..................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTCTGTGTAAAGGAGTGTGT...................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGAG....................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTATGT...................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGCAAAGGAGTGTGTGTCT.................................................................................. 26 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACACATAGG.................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGAGTGTAAAGGAGTGTGT...................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGGTTGT...................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGGTGGGTAAAGGAGTGTGT...................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTACAGGAGTGTGT...................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTCAAGGAGTGTGTG..................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACGCACAGG.................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTTTGTGTGTAAAGGAGTGTGT...................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGCGTAAAGGAGTGT........................................................................................ 20 1 2 1.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTTAAGGAGGGTGTG..................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGACT.......................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCATCCTGAGCACACACTGGC................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGAGTGTGTAAAGGAGTGTTT...................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GATCTCAACCTGAGCACACACAGGC................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTTTAAAGGAGTGTGT...................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACACACAGGCTC................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAACGTAGTGTGT...................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAGAGGAGTGTG....................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTCTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTACAGGAGTGTG....................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGTGTGTGTAAAGGAGTGTGT...................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGGGTGTGTG................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGAGTGTGTAAAGGAGTGTGTG..................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTATGTAAAGGAGTGTGT...................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTATGTGTGTAAAGGAGTGTG....................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGCGCACACACAGGC................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGTGTG................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGCGTTTGTG..................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCCCACCCAGGC................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CTTGTGTGTGTAAAGGAGTGTG....................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGAGTGTAAAGGAGTGTG....................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGAGTGTGTAAAGGAGTGT........................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACGTGAGCACACACAGGC................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCGGACCACACACAGGC................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGGGTGTAAAGGAGTGTG....................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTTTGTAAAGGAGTGTGC...................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGCGTGTAAAGTAGTGTG....................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTATGTAAAGGAGTGTG....................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGGGTAAAGGAGTGT........................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTCA.................................................................................... 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAACCTGAGCACACACA...................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATGTGTGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TGTTTGTGTGTGTAAAGGAGTC......................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGCGTGCAAAGGAGTGTGTG..................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGGGCAAAGGAGTGTGT...................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGGGTGTAAAGGAGGGTGTG..................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTATGTGTGTAAAGGAGTGT........................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGCGTGTAAAGGATTGTGTG..................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGAG......................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ACTCAACCTGAGCACACACAGGC................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGAAAAGGAGTGTGTC..................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAACGGACTGTGTG..................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTATGTGTGTAAAGGAGTGAGT...................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGTGTGTGTAAAGGAGTGTG....................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGCGTTT...................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACCCACAGGT................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATGTGTGTGTAAAGGAGTGT........................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACACATAGGC................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCCGACCTCACACAGGC................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGCGTAAAGGAGTGTG....................................................................................... 21 1 2 1.00 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTGTGTTTT................................................................................. 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGGGTGTGTAAAGGAGTGTGT...................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGAGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TGTTTGTGTGTGTAAAGGAGC.......................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGGGTGTAAAGGATTGTG....................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGGGTGTAAAGGAGTGG........................................................................................ 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGTAGTGTC....................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGCGTG..................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGCGTGTAAAGTAGTGTGT...................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GTGTGTAAAGGAGTGTGT...................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGAGT...................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAACCTGAGCACAGACAGGC................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGTGTGTAAAGGAGTGTGT...................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGTGTAG...................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGGGTGTAAAGGAGTGTGCG..................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TAGTGTGTGTAAAGGAGTGTGTG..................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGTGTGTAAAGGAGTGTGT...................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGTGTGTGTAAAGGAGGGTGTT..................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGTACCTATTTGTGTGTTTCCGTCCGGCGTAACAACCACACACACACACAAACACACACATTTCCTCACACACACACTTACTTATGAGTTGGACTCGTGTGTGTCCGTGTGCGTGTGTGTATCGGTGTCGACGGCGGTTCAACAAAACACAACCGCAA

************************************.((((((((((((((((((((((((..(((..((.((((........)))).)).)))..))))))))))))))))))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060657

140_testes_total

 SRR060679

140x9_testes_total

 SRR060669

160x9_females_carcasses_total

 SRR2096055

Ovary_Min_43		 SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		 SRR060663

160_0-2h_embryos_total

 M047

female body

 SRR060687

9_0-2h_embryos_total

 SRR2096059

Ovary_Min_164		 V053

head
..........................................................................CACTAACTTGTGCGTTGGA................................................................. 19 3 16 0.19 3 2 0 0 0 0 1 0 0 0 0
................................................................................................GTGTGTGTCCGTGTGCGTGTG......................................... 21 0 11 0.09 1 0 1 0 0 0 0 0 0 0 0
..........................................CACACACAAACACACACATT................................................................................................ 20 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0
................................................................................CATATGAGATGGACTGGTG........................................................... 19 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0
................................................................................................GTGTGTGTCCGTGTGCGTGT.......................................... 20 0 15 0.07 1 0 0 0 0 1 0 0 0 0 0
...................................CCACACACACACACAAACACA...................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...................................CCACACACACACACAAAC......................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
........................CGGCGGAGCAACCACAAACA.................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..................................................................................TATGAGATGGACTGGTGG.......................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droVir3 scaffold_12928:2858443-2858600 + dvi_27 confident GC---ATGGA---TAAACAC-----------------------------------------A--------------CAAAGGCA-GGCCGCA-TTGTT---GGTGT------GTGTGTG--TGTTTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGTGTGAATGAATAC------------------------TCA--AC------CTGAGCA------CACACAG--GCAC-----------------ACG-----------------------------CACACACATAGCCACAGCTG----------------CCGCCAAGTTGTTTTGTGTTGGCGTT
droMoj3 scaffold_6500:12415479-12415633 - GC---ACACA---TAC--ACA----------CAGAAACATA---------------------------------------------GCTGCA--TGTC---TGTGTGT----GTGTGTG--TGTG--TG--------TGTGT-------GTGTGTGT--------------------------GT------------AT--------------GTGTGTGTAG--ATATGA----------------------------------------CCCAACTCATTT--AGTACACACCAACTGCA----------------------------------------ACAACAACAACAACAACAACGCGA---------------------GTTTTGTCATTGCATC
droGri2 scaffold_15203:1863640-1863775 - GC---TTGGC---CAA--GCA----------CAACCACGTG---------------------------------------------TACTCA--AGTA---GGTGTGAGTGCGTGTGTGTGTGTG--TC--------TATGT-------GTGTGTGT--------------------------GC------------A----------------TGG--------GTATTAAATAACTGTAACTAAGCCGAATGCA-AAT------TGCGCCT----------------------------------------------------------------------------------------------------------------CTGTTTTTTGAGA-GTGT
droWil2 scf2_1100000004822:717305-717427 - TG---TGT-G---TGT--G---------------------------------------TATGTGTGTGTGT------------------GT---------------------GTGTGTG--------TG--------TGTGT-------GTGTGTGTGTAGACAATCAACACAGGATGTTTTTGCGCTCATTATGCGGCAGCTGTAT------------------------------------------------------------------TCACCAC--------------------------------------------------------------------------------------------------------GTGTGTGCGTGTGTGTGTG
dp5 XL_group1e:7469598-7469708 + GA---GTGTGGCAT--ACAAT-------------------------------------------------------CA----------------GG-------CGT------CTCTGGCTATATA--TC--------TGTGA----TGTTTATGTGG--------------------------AG------------AAAGTT-------------------------A------------------------GGA--CA------TTGGACA------CACACAC--ACAC-----------------ACA-----------------------------CACACACAAATACCC----------------------------------------ACCTGCC
droPer2 scaffold_2327:1923-2087 + GC---CGA-G---TAAATG--T-CATGCCAGAGGAGGAATA---------------------------------------------G-AGGA-ATGCT-------T------GTTTATGTATGTA--TC--------TAAGT-------ATCTCAAT--------------------------GT------------G----------------TGA--------GTGCTGCCCAA-----------------CACAACTATGCACTTAAATG-CA---GTCA--C--GTAC-----------------ACA-----------------------------CACACACACACACACAGAGA----------------CGTACATAT--TATTATCTTGACACA
droAna3 scaffold_12929:1258967-1259100 - GC---AAGGA---CAAACG--TACATTTCAATTTCGAAATTAAGTGGCTCACTTGCCTTGTTTGTAT--------------------TTGAA--T-----------------G--------TCTATGTGT--GTGTGTTAGT-------GTGTGTGT--------------------------GT------------GTTT------------------------------------------------------------------TTGATG----------------CAT-----------------TCGCCTATA--------------CA-------TGT----------------------------------------------ATGTGTGG-GTGT
droBip1 scf7180000393717:11479-11545 + TG---CA------T--ACACA-------------------------------------------------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACACA------CAC-----------------ACA-----------------------------CACACACACAGACACATTGAATCTA---------------------GCTATCTCGTTTTGGC
droKik1 scf7180000302586:24137-24280 - GT---TGC-T---T--------------------------------------------------------------------------------TTTC---GGCGT------GTGTGTGTGTGTG--TG--------TATCA----AGCA--TAAAA--------------------------GT------------AG--------------GTCA--------GTTC------------------------GAT--AT------TTCGCCA----CTCACA--G--ACAC-----------------ACA------CACCGCACTCTTCATAAAGCATAG--------AAGCACAGAGCTC---------------ACACAAACGCTCTTATGC-GGCAAT
droFic1 scf7180000453829:679626-679691 + CA---AAGGG---AT---T---------------------------------------TTCCCT------------------------------TGTC---AGAGT------GTGTGTGTGCGTG--TG--------TGTGT-------ATCTCAAT--------------------------GT------------AT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTG
droEle1 scf7180000491044:976018-976134 - AT---CTCTG--------------------------------------------------------------------------------------------CTGT------GTATGCT--TGTA------------TCTGTGTGATG--TGCAAAT--------------------------GA------------TACACTCACT------------------------------------------------------------------CACACACACA--AAAGCAC-----------------ACG-----------------------------CACTCACACAGTCACCGCAG----------------CATACACATGCAATTG-ATTTGTACT
droRho1 scf7180000777097:181134-181263 + TC---AGC-A---A--ACAG---------------------------------------C----------------CAAAGTTAAAG----------T---GGCTTTTGTGAGTGTGCGTTTAAA--TCGATATGTTTAAGC-------TGCTGACT--------------------------GC------------AA-----------------------TGTAAGC------------------------GAA--CT------TTTGACACAAATACACT--AGTACAC-----------------ACT-----------------------------CACACACACACACA----------------------------------------------CA
droBia1 scf7180000301141:1071-1176 + GCCCTGTGTG---TGT--G---------------------------------------TGTGTGTGTGTGT------------------GTG--TGTGTG-TGTGTGT----GTGTGTG--TGTG--TG--------TGTGT-------GTGTGT-------------------------------------------------------------------------------------------------------------------GTG----------------------------------------------------------------------T--GTGTGTGTGTGTGT----------------------GTGTGTGTGTGTGTGTGTGTG
droTak1 scf7180000415381:115398-115429 + CA---CAC-A---CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--ACAC-----------------ACA-----------------------------CACACACACACACA----------------------------------------------CA
droEug1 scf7180000408994:222457-222604 + TC---ACTGC---TGT--A---------------------------------------C------------CACT-CAAAAATA-ATCTGCATATGTG---TGCGT------GTGTGTGTGTGTG--TG--------TTCGT-------TATTTAAA--------------------------GC------------AA--------GTCTAGCAAA----ATATGCTG------------------------AAA--CT------TTGGGCC------AAAA--------T-------ACGAAGACGAGCC-----------------------------CAAAAACG------AAGCA-----------------------------CCTACC-ACACGCC
dm3 chr3L:8267125-8267282 - GC---ATGTG---CAT--A---------------------------------------TTCAGTTGTTTGCGAAGCCAAAGGCA-GGTGGCA-GTGT---------------GTGTGTG--TGTG--TG--------TG-----------TTGGAGT--------------------------------------------TTG---TGGTGTGGGCCGGAAGAAAAGA------------------------GAA--AG------CCGGAAA------TACA--------T-----------------ATA------CATTAAAACACTTACGATACACAAATACACAAGGACAC------------------------------------------AAGTG
droSim2 x:5116999-5117100 + GT---GT---------------------------------------------------------------------------------------------------------GTGTGTGTGCGTG--TG--------TAAGT-------TTGTGCAT--------------------------GC------------AAAACTGAAT------------------------------------------------------------------CCAACACACA--GATACAC-----------------ACA-----------------------------CAC--ACACACACGTCGGG----------------------TAGTCCTTAAGTGGCATCATT
droSec2 scaffold_4:1275782-1275889 - GT---GCGAG---T--------------------------------------------------------------------------------------------------GTGTGTGTGCGTG--TG--------TAAGT-------TTGTGCAT--------------------------GC------------AAAACTGAAT------------------------------------------------------------------CCAACACACA--GATACAC-----------------GCG-----------------------------CACAAACACACACGCCTGG----------------------TAGTCCTTAAGTGGCATCATT
droYak3 X:14348643-14348769 + GC---ATGCA---TAC--A---------------------------------------TACATACATACGT------------------GCA--TATCCTTTCCAC------ATATGTG--TATG--TG--------TT-----------TCTACAT--------------------------------------------CTG---C-GCGTGTGCGTGAAGCAACAA------------------------CAA--AT------TCGCACT------AACA--------C-----------------ACA-----------------------------CACACACACTCACACAGCA----------------------------------------TAG
droEre2 scaffold_4690:17455919-17456088 - GC---ATGCG---TCC--T---------------------------------------TGTGTGTATTTGT------------------GT---------------------G--------CCTAGCTGT--GTGTTTGTGT-------TTGTGTGT--------------------------GT------------GAGGCCA---GGTTGCGAGCGTTAATATGCCA------------------------CAA--GC------TCACG------CACACA--CG--TAC-----------------ACA-----------------------------CACACTCAGAGACACAGAGTGCCAGCCAAAAGGATAATGACA-CTTGGCGCGCATTTACCGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GC---ATGGA---TAAACAC-----------------------------------------A--------------CAAAGGCA-GGCCGCA-TTGTT---GGTGT------GTGTGTG--TGTTTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGTGTGAATGAATAC------------------------TCA--AC------CTGAGCA------CACACAG--GCAC-----------------ACG-----------------------------CACACACATAGCCACAGCTG----------------CCGCCAAGTTGTTTTGTGTTGGCGTTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGT..............................................................................................................................................................................................2013543.0035432093129182382015416675180206433001963433371111726514415127006812144112000000000000000002023763600027110613519903473
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGT............................................................................................................................................................................................2211865.001865417622724231012103180008453318439223024704407355183273015000002400000000000000000101758828300000002001000001
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTG...........................................................................................................................................................................................2311772.00177208393215156214118400066521675372311077744662143544496033000124000000000000000010244925122901000002000000100
....................................................................................................................................................................................................................................C------------------------TCA--AC------CTGAGCA------CACACAG--GC.................................................................................................................2211340.0013401125092143200000012159183310237231141460367614362581090500000150000000000000000013779901300020300000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTG.............................................................................................................................................................................................211876.008763735143046610103600034161331104303201231444262741010000002900000000000000000001613111000001000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTG...............................................................................................................................................................................................191568.0056821171136272514020002003215403612013922225109000101600000000000000000000153600010001100000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTC.............................................................................................................................................................................................211142.0014220100300002700000000001800000001147130600000100000000000000000000001300000000000000000
.............................................................................................................................................................................................................................................................TCA--AC------CTGAGCA------CACACAG--GC.................................................................................................................211122.001220017900000000001521442210130000014751200000200000000000000000000002100000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GT................................................................................................................................................................................................18173.007301600804112100011121150000100265302000002000000000000000000005200000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTT.............................................................................................................................................................................................21162.006201110605018000010100020100000332701000003000000000000000000002400000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTTC............................................................................................................................................................................................22157.005700100500023000000000060000000411800000004000000000000000000000400000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTCC............................................................................................................................................................................................22156.005600000150007000000000090000000111406000009000000000000000000000300000000000000000
....................................................................................................................................................................................................................................C------------------------TCA--AC------CTGAGCA------CACACAG--G..................................................................................................................21153.00530060030000000010110110200000844800000000000000000000000001017400000000000000000
.............................................................................................................................................................................................................................................................TCA--AC------CTGAGCA------CACACAG--G..................................................................................................................20143.00430150011001000000000040300100724700000001000000000000000000004100000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGT..........................................................................................................................................................................................24128.00280000000000000003021210100000211000000000000000000000000000007700000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGA............................................................................................................................................................................................22127.00270010020001000011000100100000101000000001000000000000000000007900000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGC..............................................................................................................................................................................................20125.002521201010201000000000000100000001100000000000000000000000000002100000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGA..........................................................................................................................................................................................24122.00220101000000000001030101300010100100000001000000000000000000001600000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGTG.........................................................................................................................................................................................25121.00210100020100000001000120000000000101000001000000000000000000007300000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGG..............................................................................................................................................................................................20121.002161300000001000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTT...........................................................................................................................................................................................23120.00200000000001100001100000200000010100000000000000000000000000054300000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTC...........................................................................................................................................................................................23116.00160000030104000000000040000000100201000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TCA--AC------CTGAGCA------CACACAG--...................................................................................................................19115.00150000000000000000200040000000020200000000000000000000000000013000000000000000001
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTAA............................................................................................................................................................................................22115.00150030010002000000000010000010020000000000000000000000000000000400001000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTA.............................................................................................................................................................................................21114.00140010000101000001000000000000011101000000000000000000000000000500010000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTC...............................................................................................................................................................................................19114.00140010000002000000000010000000302301000001000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGC............................................................................................................................................................................................22114.00140404010001000000000020000000000000000000000000000000000000002000000000000000000
....................................................................................................................................................................................................................................C------------------------TCA--AC------CTGAGCA------CACACAG--GT.................................................................................................................22110.00100000000001000000000000010020050000000000000000000000000000001000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTCC..............................................................................................................................................................................................2029.50192000060000000000000080001000001000000000000000000000000000000100000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTTA............................................................................................................................................................................................2219.0090020000001000010000000000000031000000000000000000000000000000100000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTCA............................................................................................................................................................................................2219.0090000000000000000000010000000010600000001000000000000000000000000000000000000000
.............................................................................................................................TGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGT..............................................................................................................................................................................................1919.0090050000001000000000000000000001000000000000000000000000000000200000000000000000
.............................................................................................................................TGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGT............................................................................................................................................................................................2117.0070060000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTA...............................................................................................................................................................................................1917.0070000000101000010000000000000110200000000000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGA..............................................................................................................................................................................................2036.33190010000102000000000000000100031100000000000000000000000000000900000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGAA...........................................................................................................................................................................................2316.0060020000000000001000100100000000000000000000000000000000000000100000000000000000
....................................................................................................................................................................................................................................C------------------------TCA--AC------CTGAGCA------CACACAG--GCA................................................................................................................2316.0060000000000000000000002100000001000000000000000000000000000101000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTA...........................................................................................................................................................................................2316.0060002000000000000000000000000200000000000000000000000000000002000000000000000000
....................................................................................................................................................................................................................................C------------------------TCA--AC------CTGAGCA------CACACAG--...................................................................................................................2015.0050000000000000000100000100000100000000000000000000000000000002000000000000000000
.............................................................................................................................................................................................................................................................TCA--AC------CTGAGCA------CACACAG--GCT................................................................................................................2215.0050010000000000010000000100000000200000000000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTCC..........................................................................................................................................................................................2415.0050000010000000000000010000000200001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................A--AC------CTGAGCA------CACACAG--GC.................................................................................................................1915.0050010000001000021000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................A--AC------CTGAGCA------CACACAG--GCAC-----------------..............................................................................................2114.0040010000000000011000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTG...........................................................................................................................................................................................2214.0040020000000000000010000000000000000000000000000000000000000000100000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTTA..........................................................................................................................................................................................2414.0040000000000000000000000100000000000000000000000000000000000001200000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGG............................................................................................................................................................................................2214.0041100000000000000000000000000000000000000000000000000000000002000000000000000000
.........................................................................................................................TGTTTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGT..............................................................................................................................................................................................2314.0040210000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGC..........................................................................................................................................................................................2414.0040001000000000000000000000000000100000001000000000000000000000100000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTT...............................................................................................................................................................................................1923.5070020020001100000000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGCCC........................................................................................................................................................................................2623.5070000000000000000000020000000120000000001000000000000000000000100000000000000000
....................................................................................................................................................................................................................................C------------------------TCA--AC------CTGAGCA------CACACAG--GCT................................................................................................................2313.0030000000000000000010001000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CA--AC------CTGAGCA------CACACAG--GC.................................................................................................................2013.0030011000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................TGTTTGTG--------TGTGT-------AAAGGA------------------------------------------------------GT................................................................................................................................................................................................2113.0030110000001000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGTCC........................................................................................................................................................................................2613.0030000000001000000000020000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................C------------------------TCA--AC------CTGAGCA------CACACAG--GA.................................................................................................................2213.0030010000000000001000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTAAA...........................................................................................................................................................................................2322.5050000000000000000000100000000000100001000000000000000000000000200000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGTA.........................................................................................................................................................................................2512.0020000000000000000100000000000000000000000000000000000000000000100000000000000000
.............................................................................................................................................................................................................................................................TCA--AC------CTGAGCA------CACACAG--GT.................................................................................................................2122.0040001000000000000021000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTG...........................................................................................................................................................................................2012.0020001000000000000000010000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TTTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGT..............................................................................................................................................................................................2112.0020110000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................A--AC------CTGAGCA------CACACAG--GCAC-----------------A.............................................................................................2212.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TCA--AC------CTGAGCA------CACACAG--GCA................................................................................................................2212.0020000000000000000000000001000000000010000000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGTC.........................................................................................................................................................................................2512.0020000000000000000000010000000100000000000000000000000000000000000000000000000000
.........................................................................................................................TGTTTGTG--------TGTGT-------AAAGGA------------------------------------------------------G.................................................................................................................................................................................................2012.0020000010000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................GTG--------TGTGT-------AAAGGA------------------------------------------------------GTGT..............................................................................................................................................................................................1812.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTCCC...........................................................................................................................................................................................2312.0020000020000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGAA.........................................................................................................................................................................................2512.0020000000001000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................TGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGT..........................................................................................................................................................................................2312.0020000000000000000000020000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGG..........................................................................................................................................................................................2412.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTCCC.........................................................................................................................................................................................2522.0040000000000000000000010000000000001000000000000000000000000000000000020000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GA................................................................................................................................................................................................1821.5030000000002000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGCC.........................................................................................................................................................................................2521.5030000000000000000000000000000100100000001000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTTC..........................................................................................................................................................................................2411.0010000000001000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTGTGTG.......................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGTCA..........................................................................................................................................................................................2411.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TCA--AC------CTGAGCA------CACACA......................................................................................................................1811.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TGTTTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTC...............................................................................................................................................................................................2211.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AC------------------------TCA--AC------CTGAGCA------CACACAG--GC.................................................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TGTTTGTG--------TGTGT-------AAAGGA------------------------------------------------------GC................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
................................................................................................................................G--------TGTGT-------AAAGGA------------------------------------------------------GTGTGT............................................................................................................................................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGT............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................TTGTG--------TGTGT-------AAAGGA------------------------------------------------------GTGTAG............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................TG--------TGTGT-------AAAGGA------------------------------------------------------GTGTGT............................................................................................................................................................................................1911.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
droMoj3
GC---ACACA---TAC--ACA----------CAGAAACATA---------------------------------------------GCTGCA--TGTC---TGTGTGT----GTGTGTG--TGTG--TG--------TGTGT-------GTGTGTGT--------------------------GT------------AT--------------GTGTGTGTAG--ATATGA----------------------------------------CCCAACTCATTT--AGTACACACCAACTGCA----------------------------------------ACAACAACAACAACAACAACGCGA---------------------GTTTTGTCATTGCATCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
......................................................................................................................................................TGTGTGT--------------------------GT------------AT--------------GTGTGTG.......................................................................................................................................................................................18200.051100000
droGri2
GC---TTGGC---CAA--GCA----------CAACCACGTG---------------------------------------------TACTCA--AGTA---GGTGTGAGTGCGTGTGTGTGTGTG--TC--------TATGT-------GTGTGTGT--------------------------GC------------A----------------TGG--------GTATTAAATAACTGTAACTAAGCCGAATGCA-AAT------TGCGCCT----------------------------------------------------------------------------------------------------------------CTGTTTTTTGAGA-GTGTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droWil2
TG---TGT-G---TGT--G---------------------------------------TATGTGTGTGTGT------------------GT---------------------GTGTGTG--------TG--------TGTGT-------GTGTGTGTGTAGACAATCAACACAGGATGTTTTTGCGCTCATTATGCGGCAGCTGTAT------------------------------------------------------------------TCACCAC--------------------------------------------------------------------------------------------------------GTGTGTGCGTGTGTGTGTGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...............T--G---------------------------------------TATGTGTGTGTGT------------------GT---------------------GT.................................................................................................................................................................................................................................................................................................19200.10200002
dp5
GA---GTGTGGCAT--ACAAT-------------------------------------------------------CA----------------GG-------CGT------CTCTGGCTATATA--TC--------TGTGA----TGTTTATGTGG--------------------------AG------------AAAGTT-------------------------A------------------------GGA--CA------TTGGACA------CACACAC--ACAC-----------------ACA-----------------------------CACACACAAATACCC----------------------------------------ACCTGCCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droPer2
GC---CGA-G---TAAATG--T-CATGCCAGAGGAGGAATA---------------------------------------------G-AGGA-ATGCT-------T------GTTTATGTATGTA--TC--------TAAGT-------ATCTCAAT--------------------------GT------------G----------------TGA--------GTGCTGCCCAA-----------------CACAACTATGCACTTAAATG-CA---GTCA--C--GTAC-----------------ACA-----------------------------CACACACACACACACAGAGA----------------CGTACATAT--TATTATCTTGACACASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droAna3
GC---AAGGA---CAAACG--TACATTTCAATTTCGAAATTAAGTGGCTCACTTGCCTTGTTTGTAT--------------------TTGAA--T-----------------G--------TCTATGTGT--GTGTGTTAGT-------GTGTGTGT--------------------------GT------------GTTT------------------------------------------------------------------TTGATG----------------CAT-----------------TCGCCTATA--------------CA-------TGT----------------------------------------------ATGTGTGG-GTGTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................................T--GTGTGTTAGT-------GTGTGTG.......................................................................................................................................................................................................................................................18200.051100000
droBip1
TG---CA------T--ACACA-------------------------------------------------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACACA------CAC-----------------ACA-----------------------------CACACACACAGACACATTGAATCTA---------------------GCTATCTCGTTTTGGCSizeHit CountTotal NormTotal
No Reads
droKik1
GT---TGC-T---T--------------------------------------------------------------------------------TTTC---GGCGT------GTGTGTGTGTGTG--TG--------TATCA----AGCA--TAAAA--------------------------GT------------AG--------------GTCA--------GTTC------------------------GAT--AT------TTCGCCA----CTCACA--G--ACAC-----------------ACA------CACCGCACTCTTCATAAAGCATAG--------AAGCACAGAGCTC---------------ACACAAACGCTCTTATGC-GGCAATSizeHit CountTotal NormTotal
No Reads
droFic1
CA---AAGGG---AT---T---------------------------------------TTCCCT------------------------------TGTC---AGAGT------GTGTGTGTGCGTG--TG--------TGTGT-------ATCTCAAT--------------------------GT------------AT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGSizeHit CountTotal NormTotal
No Reads
droEle1
AT---CTCTG--------------------------------------------------------------------------------------------CTGT------GTATGCT--TGTA------------TCTGTGTGATG--TGCAAAT--------------------------GA------------TACACTCACT------------------------------------------------------------------CACACACACA--AAAGCAC-----------------ACG-----------------------------CACTCACACAGTCACCGCAG----------------CATACACATGCAATTG-ATTTGTACTSizeHit CountTotal NormTotal
No Reads
droRho1
TC---AGC-A---A--ACAG---------------------------------------C----------------CAAAGTTAAAG----------T---GGCTTTTGTGAGTGTGCGTTTAAA--TCGATATGTTTAAGC-------TGCTGACT--------------------------GC------------AA-----------------------TGTAAGC------------------------GAA--CT------TTTGACACAAATACACT--AGTACAC-----------------ACT-----------------------------CACACACACACACA----------------------------------------------CASizeHit CountTotal NormTotal
No Reads
droBia1
GCCCTGTGTG---TGT--G---------------------------------------TGTGTGTGTGTGT------------------GTG--TGTGTG-TGTGTGT----GTGTGTG--TGTG--TG--------TGTGT-------GTGTGT-------------------------------------------------------------------------------------------------------------------GTG----------------------------------------------------------------------T--GTGTGTGTGTGTGT----------------------GTGTGTGTGTGTGTGTGTGTGSizeHit CountTotal NormTotal
No Reads
droTak1
CA---CAC-A---CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--ACAC-----------------ACA-----------------------------CACACACACACACA----------------------------------------------CASizeHit CountTotal NormTotal
No Reads
droEug1
TC---ACTGC---TGT--A---------------------------------------C------------CACT-CAAAAATA-ATCTGCATATGTG---TGCGT------GTGTGTGTGTGTG--TG--------TTCGT-------TATTTAAA--------------------------GC------------AA--------GTCTAGCAAA----ATATGCTG------------------------AAA--CT------TTGGGCC------AAAA--------T-------ACGAAGACGAGCC-----------------------------CAAAAACG------AAGCA-----------------------------CCTACC-ACACGCCSizeHit CountTotal NormTotal
No Reads
dm3
GC---ATGTG---CAT--A---------------------------------------TTCAGTTGTTTGCGAAGCCAAAGGCA-GGTGGCA-GTGT---------------GTGTGTG--TGTG--TG--------TG-----------TTGGAGT--------------------------------------------TTG---TGGTGTGGGCCGGAAGAAAAGA------------------------GAA--AG------CCGGAAA------TACA--------T-----------------ATA------CATTAAAACACTTACGATACACAAATACACAAGGACAC------------------------------------------AAGTGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...............T--A---------------------------------------TTCAGTTGTTTGCGAAGCCAAAGG.................................................................................................................................................................................................................................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
....................................................................TGCGAAGCCAAAGGCA-GGTGGCA-GT....................................................................................................................................................................................................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
...........................................................TCAGTTGTTTGCGAAGCCAAAGGCA-GG............................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...............................................................................................................................................................................................................TGGTGTGGGCCGGAAGAAAAGA------------------------GAA--.................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................TTGTTTGCGAAGCCAAAGGCA-GG............................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................TACGATACACAAATACACAAGGACA................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................G---TGGTGTGGGCCGGAAGA...................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................TTGTTTGCGAAGCCAAAGGCA-GGTGG.........................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................TTCAGTTGTTTGCGAAGCCAAAGGCA-..............................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................TGTTTGCGAAGCCAAAGGCA-GGTGG.........................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................CAAAGGCA-GGTGGCA-GTGT---------------GTGT...............................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............T--A---------------------------------------TTCAGTTGTTTGCGAAGCCAAAGGCA-..............................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................TTGCGAAGCCAAAGGCA-GGTGGCA-......................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................TTGTTTGCGAAGCCAAAGGCA-GGTGGC........................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................TGTTTGCGAAGCCAAAGGCA-GGTGGCA-G.....................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................TTGCGAAGCCAAAGGCA-GGTGGCA-GT....................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................TGGCA-GTGT---------------GTGTGTG--TGT.......................................................................................................................................................................................................................................................................................19120.253000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000020000000000000000000000000
..............................................................................................TGT---------------GTGTGTG--TGTG--TG--------TG-----------TTGGA........................................................................................................................................................................................................................................................2370.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................................................................................................................GTGTGTG--TGTG--TG--------TG-----------TTGG.........................................................................................................................................................................................................................................................19200.102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000
..............................................................................AAGGCA-GGTGGCA-GTGA---------------T..................................................................................................................................................................................................................................................................................................18130.081000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GTGTG--TGTG--TG--------TG-----------TTGGA........................................................................................................................................................................................................................................................18160.061000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................T---------------GTGTGTG--TGTG--TG--------TG-----------TTG..........................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................TGTGTG--TGTG--TG--------TG-----------TTGGAGA--------------------------------------------..........................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GT---GT---------------------------------------------------------------------------------------------------------GTGTGTGTGCGTG--TG--------TAAGT-------TTGTGCAT--------------------------GC------------AAAACTGAAT------------------------------------------------------------------CCAACACACA--GATACAC-----------------ACA-----------------------------CAC--ACACACACGTCGGG----------------------TAGTCCTTAAGTGGCATCATTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.T---GT---------------------------------------------------------------------------------------------------------GTGTGTGTGCGTG--T...................................................................................................................................................................................................................................................................................17200.15300000000003000000
.T---GT---------------------------------------------------------------------------------------------------------GTGTGTGTGCGTG--TG--------T.........................................................................................................................................................................................................................................................................19200.10200000000002000000
droSec2
GT---GCGAG---T--------------------------------------------------------------------------------------------------GTGTGTGTGCGTG--TG--------TAAGT-------TTGTGCAT--------------------------GC------------AAAACTGAAT------------------------------------------------------------------CCAACACACA--GATACAC-----------------GCG-----------------------------CACAAACACACACGCCTGG----------------------TAGTCCTTAAGTGGCATCATTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
GC---ATGCA---TAC--A---------------------------------------TACATACATACGT------------------GCA--TATCCTTTCCAC------ATATGTG--TATG--TG--------TT-----------TCTACAT--------------------------------------------CTG---C-GCGTGTGCGTGAAGCAACAA------------------------CAA--AT------TCGCACT------AACA--------C-----------------ACA-----------------------------CACACACACTCACACAGCA----------------------------------------TAGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
No Reads
droEre2
GC---ATGCG---TCC--T---------------------------------------TGTGTGTATTTGT------------------GT---------------------G--------CCTAGCTGT--GTGTTTGTGT-------TTGTGTGT--------------------------GT------------GAGGCCA---GGTTGCGAGCGTTAATATGCCA------------------------CAA--GC------TCACG------CACACA--CG--TAC-----------------ACA-----------------------------CACACTCAGAGACACAGAGTGCCAGCCAAAAGGATAATGACA-CTTGGCGCGCATTTACCGTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads

Generated: 10/20/2015 at 10:26 PM